@swarmdo/cli 1.4.8

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  1. package/.claude/agents/analysis/analyze-code-quality.md +179 -0
  2. package/.claude/agents/analysis/code-analyzer.md +210 -0
  3. package/.claude/agents/analysis/code-review/analyze-code-quality.md +179 -0
  4. package/.claude/agents/architecture/arch-system-design.md +157 -0
  5. package/.claude/agents/architecture/system-design/arch-system-design.md +155 -0
  6. package/.claude/agents/browser/browser-agent.yaml +182 -0
  7. package/.claude/agents/consensus/byzantine-coordinator.md +63 -0
  8. package/.claude/agents/consensus/crdt-synchronizer.md +997 -0
  9. package/.claude/agents/consensus/gossip-coordinator.md +63 -0
  10. package/.claude/agents/consensus/performance-benchmarker.md +851 -0
  11. package/.claude/agents/consensus/quorum-manager.md +823 -0
  12. package/.claude/agents/consensus/raft-manager.md +63 -0
  13. package/.claude/agents/consensus/security-manager.md +622 -0
  14. package/.claude/agents/core/planner.md +375 -0
  15. package/.claude/agents/custom/test-long-runner.md +44 -0
  16. package/.claude/agents/data/data-ml-model.md +445 -0
  17. package/.claude/agents/data/ml/data-ml-model.md +193 -0
  18. package/.claude/agents/development/backend/dev-backend-api.md +142 -0
  19. package/.claude/agents/development/dev-backend-api.md +345 -0
  20. package/.claude/agents/devops/ci-cd/ops-cicd-github.md +164 -0
  21. package/.claude/agents/devops/ops-cicd-github.md +165 -0
  22. package/.claude/agents/documentation/api-docs/docs-api-openapi.md +174 -0
  23. package/.claude/agents/documentation/docs-api-openapi.md +355 -0
  24. package/.claude/agents/github/code-review-swarm.md +377 -0
  25. package/.claude/agents/github/github-modes.md +173 -0
  26. package/.claude/agents/github/issue-tracker.md +576 -0
  27. package/.claude/agents/github/multi-repo-swarm.md +553 -0
  28. package/.claude/agents/github/pr-manager.md +438 -0
  29. package/.claude/agents/github/project-board-sync.md +509 -0
  30. package/.claude/agents/github/release-manager.md +605 -0
  31. package/.claude/agents/github/release-swarm.md +583 -0
  32. package/.claude/agents/github/repo-architect.md +398 -0
  33. package/.claude/agents/github/swarm-issue.md +573 -0
  34. package/.claude/agents/github/swarm-pr.md +428 -0
  35. package/.claude/agents/github/sync-coordinator.md +452 -0
  36. package/.claude/agents/github/workflow-automation.md +903 -0
  37. package/.claude/agents/goal/agent.md +803 -0
  38. package/.claude/agents/optimization/benchmark-suite.md +665 -0
  39. package/.claude/agents/optimization/load-balancer.md +431 -0
  40. package/.claude/agents/optimization/performance-monitor.md +672 -0
  41. package/.claude/agents/optimization/resource-allocator.md +674 -0
  42. package/.claude/agents/optimization/topology-optimizer.md +808 -0
  43. package/.claude/agents/payments/agentic-payments.md +126 -0
  44. package/.claude/agents/sona/sona-learning-optimizer.md +74 -0
  45. package/.claude/agents/sparc/architecture.md +699 -0
  46. package/.claude/agents/sparc/pseudocode.md +520 -0
  47. package/.claude/agents/sparc/refinement.md +802 -0
  48. package/.claude/agents/sparc/specification.md +478 -0
  49. package/.claude/agents/specialized/mobile/spec-mobile-react-native.md +225 -0
  50. package/.claude/agents/specialized/spec-mobile-react-native.md +227 -0
  51. package/.claude/agents/sublinear/consensus-coordinator.md +333 -0
  52. package/.claude/agents/sublinear/matrix-optimizer.md +180 -0
  53. package/.claude/agents/sublinear/pagerank-analyzer.md +295 -0
  54. package/.claude/agents/sublinear/performance-optimizer.md +363 -0
  55. package/.claude/agents/sublinear/trading-predictor.md +242 -0
  56. package/.claude/agents/swarm/adaptive-coordinator.md +1127 -0
  57. package/.claude/agents/swarm/hierarchical-coordinator.md +710 -0
  58. package/.claude/agents/swarm/mesh-coordinator.md +963 -0
  59. package/.claude/agents/templates/automation-smart-agent.md +205 -0
  60. package/.claude/agents/templates/base-template-generator.md +289 -0
  61. package/.claude/agents/templates/coordinator-swarm-init.md +90 -0
  62. package/.claude/agents/templates/github-pr-manager.md +177 -0
  63. package/.claude/agents/templates/implementer-sparc-coder.md +259 -0
  64. package/.claude/agents/templates/memory-coordinator.md +187 -0
  65. package/.claude/agents/templates/orchestrator-task.md +139 -0
  66. package/.claude/agents/templates/performance-analyzer.md +199 -0
  67. package/.claude/agents/templates/sparc-coordinator.md +514 -0
  68. package/.claude/agents/testing/production-validator.md +395 -0
  69. package/.claude/agents/testing/tdd-london-swarm.md +244 -0
  70. package/.claude/agents/tmp.json +0 -0
  71. package/.claude/agents/v3/aidefence-guardian.md +282 -0
  72. package/.claude/agents/v3/claims-authorizer.md +208 -0
  73. package/.claude/agents/v3/collective-intelligence-coordinator.md +993 -0
  74. package/.claude/agents/v3/ddd-domain-expert.md +220 -0
  75. package/.claude/agents/v3/injection-analyst.md +236 -0
  76. package/.claude/agents/v3/performance-engineer.md +1233 -0
  77. package/.claude/agents/v3/pii-detector.md +151 -0
  78. package/.claude/agents/v3/reasoningbank-learner.md +213 -0
  79. package/.claude/agents/v3/security-architect-aidefence.md +410 -0
  80. package/.claude/agents/v3/security-architect.md +867 -0
  81. package/.claude/agents/v3/swarm-memory-manager.md +157 -0
  82. package/.claude/agents/v3/v3-integration-architect.md +205 -0
  83. package/.claude/commands/sDo/agents/README.md +50 -0
  84. package/.claude/commands/sDo/agents/agent-capabilities.md +140 -0
  85. package/.claude/commands/sDo/agents/agent-coordination.md +28 -0
  86. package/.claude/commands/sDo/agents/agent-spawning.md +28 -0
  87. package/.claude/commands/sDo/agents/agent-types.md +216 -0
  88. package/.claude/commands/sDo/agents/health.md +139 -0
  89. package/.claude/commands/sDo/agents/list.md +100 -0
  90. package/.claude/commands/sDo/agents/logs.md +130 -0
  91. package/.claude/commands/sDo/agents/metrics.md +122 -0
  92. package/.claude/commands/sDo/agents/pool.md +127 -0
  93. package/.claude/commands/sDo/agents/spawn.md +140 -0
  94. package/.claude/commands/sDo/agents/status.md +115 -0
  95. package/.claude/commands/sDo/agents/stop.md +102 -0
  96. package/.claude/commands/sDo/analysis/COMMAND_COMPLIANCE_REPORT.md +54 -0
  97. package/.claude/commands/sDo/analysis/README.md +9 -0
  98. package/.claude/commands/sDo/analysis/bottleneck-detect.md +162 -0
  99. package/.claude/commands/sDo/analysis/performance-bottlenecks.md +59 -0
  100. package/.claude/commands/sDo/analysis/performance-report.md +25 -0
  101. package/.claude/commands/sDo/analysis/token-efficiency.md +45 -0
  102. package/.claude/commands/sDo/analysis/token-usage.md +25 -0
  103. package/.claude/commands/sDo/automation/README.md +9 -0
  104. package/.claude/commands/sDo/automation/auto-agent.md +122 -0
  105. package/.claude/commands/sDo/automation/self-healing.md +106 -0
  106. package/.claude/commands/sDo/automation/session-memory.md +90 -0
  107. package/.claude/commands/sDo/automation/smart-agents.md +73 -0
  108. package/.claude/commands/sDo/automation/smart-spawn.md +25 -0
  109. package/.claude/commands/sDo/automation/workflow-select.md +25 -0
  110. package/.claude/commands/sDo/coordination/README.md +9 -0
  111. package/.claude/commands/sDo/coordination/agent-spawn.md +25 -0
  112. package/.claude/commands/sDo/coordination/init.md +44 -0
  113. package/.claude/commands/sDo/coordination/orchestrate.md +43 -0
  114. package/.claude/commands/sDo/coordination/spawn.md +45 -0
  115. package/.claude/commands/sDo/coordination/swarm-init.md +85 -0
  116. package/.claude/commands/sDo/coordination/task-orchestrate.md +25 -0
  117. package/.claude/commands/sDo/github/README.md +11 -0
  118. package/.claude/commands/sDo/github/code-review-swarm.md +514 -0
  119. package/.claude/commands/sDo/github/code-review.md +25 -0
  120. package/.claude/commands/sDo/github/github-modes.md +147 -0
  121. package/.claude/commands/sDo/github/github-swarm.md +121 -0
  122. package/.claude/commands/sDo/github/issue-tracker.md +292 -0
  123. package/.claude/commands/sDo/github/issue-triage.md +25 -0
  124. package/.claude/commands/sDo/github/multi-repo-swarm.md +519 -0
  125. package/.claude/commands/sDo/github/pr-enhance.md +26 -0
  126. package/.claude/commands/sDo/github/pr-manager.md +170 -0
  127. package/.claude/commands/sDo/github/project-board-sync.md +471 -0
  128. package/.claude/commands/sDo/github/release-manager.md +340 -0
  129. package/.claude/commands/sDo/github/release-swarm.md +544 -0
  130. package/.claude/commands/sDo/github/repo-analyze.md +25 -0
  131. package/.claude/commands/sDo/github/repo-architect.md +367 -0
  132. package/.claude/commands/sDo/github/swarm-issue.md +485 -0
  133. package/.claude/commands/sDo/github/swarm-pr.md +288 -0
  134. package/.claude/commands/sDo/github/sync-coordinator.md +303 -0
  135. package/.claude/commands/sDo/github/workflow-automation.md +442 -0
  136. package/.claude/commands/sDo/hive-mind/README.md +17 -0
  137. package/.claude/commands/sDo/hive-mind/hive-mind-consensus.md +8 -0
  138. package/.claude/commands/sDo/hive-mind/hive-mind-init.md +18 -0
  139. package/.claude/commands/sDo/hive-mind/hive-mind-memory.md +8 -0
  140. package/.claude/commands/sDo/hive-mind/hive-mind-metrics.md +8 -0
  141. package/.claude/commands/sDo/hive-mind/hive-mind-resume.md +8 -0
  142. package/.claude/commands/sDo/hive-mind/hive-mind-sessions.md +8 -0
  143. package/.claude/commands/sDo/hive-mind/hive-mind-spawn.md +21 -0
  144. package/.claude/commands/sDo/hive-mind/hive-mind-status.md +8 -0
  145. package/.claude/commands/sDo/hive-mind/hive-mind-stop.md +8 -0
  146. package/.claude/commands/sDo/hive-mind/hive-mind-wizard.md +8 -0
  147. package/.claude/commands/sDo/hive-mind/hive-mind.md +27 -0
  148. package/.claude/commands/sDo/hooks/README.md +11 -0
  149. package/.claude/commands/sDo/hooks/overview.md +58 -0
  150. package/.claude/commands/sDo/hooks/post-edit.md +117 -0
  151. package/.claude/commands/sDo/hooks/post-task.md +112 -0
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  154. package/.claude/commands/sDo/hooks/session-end.md +118 -0
  155. package/.claude/commands/sDo/hooks/setup.md +103 -0
  156. package/.claude/commands/sDo/memory/README.md +9 -0
  157. package/.claude/commands/sDo/memory/memory-persist.md +25 -0
  158. package/.claude/commands/sDo/memory/memory-search.md +25 -0
  159. package/.claude/commands/sDo/memory/memory-usage.md +25 -0
  160. package/.claude/commands/sDo/memory/neural.md +47 -0
  161. package/.claude/commands/sDo/monitoring/README.md +9 -0
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  189. package/.claude/commands/sDo/sparc/devops.md +109 -0
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package/dist/src/memory/memory-initializer.d.ts ADDED
@@ -0,0 +1,472 @@
1
+ /**
2
+ * V3 Memory Initializer
3
+ * Properly initializes the memory database with sql.js (WASM SQLite)
4
+ * Includes pattern tables, vector embeddings, migration state tracking
5
+ *
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+ * ADR-053: Routes through ControllerRegistry → AgentDB v3 when available,
7
+ * falls back to raw sql.js for backwards compatibility.
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+ *
9
+ * @module v3/cli/memory-initializer
10
+ */
11
+ export declare function getMemoryRoot(): string;
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+ /** For tests + the `memory configure` flow that mutates the config at runtime. */
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+ export declare function _resetMemoryRootCache(): void;
14
+ /**
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+ * #2105: Resolve the full path to the SQLite memory database.
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+ * Precedence (highest to lowest):
17
+ * 1. cliFlag - explicit --path flag passed by a subcommand
18
+ * 2. SWARMDO_DB_PATH - full file-path override (new in #2105)
19
+ * 3. getMemoryRoot()/memory.db - directory from SWARMDO_MEMORY_PATH /
20
+ * config / default cwd/.swarm
21
+ */
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+ export declare function resolveDbPath(cliFlag?: string): string;
23
+ /**
24
+ * Enhanced schema with pattern confidence, temporal decay, versioning
25
+ * Vector embeddings enabled for semantic search
26
+ */
27
+ export declare const MEMORY_SCHEMA_V3 = "\n-- Swarmdo V3 Memory Database\n-- Version: 3.0.0\n-- Features: Pattern learning, vector embeddings, temporal decay, migration tracking\n\nPRAGMA journal_mode = WAL;\nPRAGMA synchronous = NORMAL;\nPRAGMA foreign_keys = ON;\n\n-- ============================================\n-- CORE MEMORY TABLES\n-- ============================================\n\n-- Memory entries (main storage)\nCREATE TABLE IF NOT EXISTS memory_entries (\n id TEXT PRIMARY KEY,\n key TEXT NOT NULL,\n namespace TEXT DEFAULT 'default',\n content TEXT NOT NULL,\n type TEXT DEFAULT 'semantic' CHECK(type IN ('semantic', 'episodic', 'procedural', 'working', 'pattern')),\n\n -- Vector embedding for semantic search (stored as JSON array)\n embedding TEXT,\n embedding_model TEXT DEFAULT 'local',\n embedding_dimensions INTEGER,\n\n -- Metadata\n tags TEXT, -- JSON array\n metadata TEXT, -- JSON object\n owner_id TEXT,\n\n -- Timestamps\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n expires_at INTEGER,\n last_accessed_at INTEGER,\n\n -- Access tracking for hot/cold detection\n access_count INTEGER DEFAULT 0,\n\n -- Status\n status TEXT DEFAULT 'active' CHECK(status IN ('active', 'archived', 'deleted')),\n\n UNIQUE(namespace, key)\n);\n\n-- Indexes for memory entries\nCREATE INDEX IF NOT EXISTS idx_memory_namespace ON memory_entries(namespace);\nCREATE INDEX IF NOT EXISTS idx_memory_key ON memory_entries(key);\nCREATE INDEX IF NOT EXISTS idx_memory_type ON memory_entries(type);\nCREATE INDEX IF NOT EXISTS idx_memory_status ON memory_entries(status);\nCREATE INDEX IF NOT EXISTS idx_memory_created ON memory_entries(created_at);\nCREATE INDEX IF NOT EXISTS idx_memory_accessed ON memory_entries(last_accessed_at);\nCREATE INDEX IF NOT EXISTS idx_memory_owner ON memory_entries(owner_id);\n\n-- ============================================\n-- PATTERN LEARNING TABLES\n-- ============================================\n\n-- Learned patterns with confidence scoring and versioning\nCREATE TABLE IF NOT EXISTS patterns (\n id TEXT PRIMARY KEY,\n\n -- Pattern identification\n name TEXT NOT NULL,\n pattern_type TEXT NOT NULL CHECK(pattern_type IN (\n 'task-routing', 'error-recovery', 'optimization', 'learning',\n 'coordination', 'prediction', 'code-pattern', 'workflow'\n )),\n\n -- Pattern definition\n condition TEXT NOT NULL, -- Regex or semantic match\n action TEXT NOT NULL, -- What to do when pattern matches\n description TEXT,\n\n -- Confidence scoring (0.0 - 1.0)\n confidence REAL DEFAULT 0.5,\n success_count INTEGER DEFAULT 0,\n failure_count INTEGER DEFAULT 0,\n\n -- Temporal decay\n decay_rate REAL DEFAULT 0.01, -- How fast confidence decays\n half_life_days INTEGER DEFAULT 30, -- Days until confidence halves without use\n\n -- Vector embedding for semantic pattern matching\n embedding TEXT,\n embedding_dimensions INTEGER,\n\n -- Versioning\n version INTEGER DEFAULT 1,\n parent_id TEXT REFERENCES patterns(id),\n\n -- Metadata\n tags TEXT, -- JSON array\n metadata TEXT, -- JSON object\n source TEXT, -- Where the pattern was learned from\n\n -- Timestamps\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n last_matched_at INTEGER,\n last_success_at INTEGER,\n last_failure_at INTEGER,\n\n -- Status\n status TEXT DEFAULT 'active' CHECK(status IN ('active', 'archived', 'deprecated', 'experimental'))\n);\n\n-- Indexes for patterns\nCREATE INDEX IF NOT EXISTS idx_patterns_type ON patterns(pattern_type);\nCREATE INDEX IF NOT EXISTS idx_patterns_confidence ON patterns(confidence DESC);\nCREATE INDEX IF NOT EXISTS idx_patterns_status ON patterns(status);\nCREATE INDEX IF NOT EXISTS idx_patterns_last_matched ON patterns(last_matched_at);\n\n-- Pattern evolution history (for versioning)\nCREATE TABLE IF NOT EXISTS pattern_history (\n id INTEGER PRIMARY KEY AUTOINCREMENT,\n pattern_id TEXT NOT NULL REFERENCES patterns(id),\n version INTEGER NOT NULL,\n\n -- Snapshot of pattern state\n confidence REAL,\n success_count INTEGER,\n failure_count INTEGER,\n condition TEXT,\n action TEXT,\n\n -- What changed\n change_type TEXT CHECK(change_type IN ('created', 'updated', 'success', 'failure', 'decay', 'merged', 'split')),\n change_reason TEXT,\n\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000)\n);\n\nCREATE INDEX IF NOT EXISTS idx_pattern_history_pattern ON pattern_history(pattern_id);\n\n-- ============================================\n-- LEARNING & TRAJECTORY TABLES\n-- ============================================\n\n-- Learning trajectories (SONA integration)\nCREATE TABLE IF NOT EXISTS trajectories (\n id TEXT PRIMARY KEY,\n session_id TEXT,\n\n -- Trajectory state\n status TEXT DEFAULT 'active' CHECK(status IN ('active', 'completed', 'failed', 'abandoned')),\n verdict TEXT CHECK(verdict IN ('success', 'failure', 'partial', NULL)),\n\n -- Context\n task TEXT,\n context TEXT, -- JSON object\n\n -- Metrics\n total_steps INTEGER DEFAULT 0,\n total_reward REAL DEFAULT 0,\n\n -- Timestamps\n started_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n ended_at INTEGER,\n\n -- Reference to extracted pattern (if any)\n extracted_pattern_id TEXT REFERENCES patterns(id)\n);\n\n-- Trajectory steps\nCREATE TABLE IF NOT EXISTS trajectory_steps (\n id INTEGER PRIMARY KEY AUTOINCREMENT,\n trajectory_id TEXT NOT NULL REFERENCES trajectories(id),\n step_number INTEGER NOT NULL,\n\n -- Step data\n action TEXT NOT NULL,\n observation TEXT,\n reward REAL DEFAULT 0,\n\n -- Metadata\n metadata TEXT, -- JSON object\n\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000)\n);\n\nCREATE INDEX IF NOT EXISTS idx_steps_trajectory ON trajectory_steps(trajectory_id);\n\n-- ============================================\n-- MIGRATION STATE TRACKING\n-- ============================================\n\n-- Migration state (for resume capability)\nCREATE TABLE IF NOT EXISTS migration_state (\n id TEXT PRIMARY KEY,\n migration_type TEXT NOT NULL, -- 'v2-to-v3', 'pattern', 'memory', etc.\n\n -- Progress tracking\n status TEXT DEFAULT 'pending' CHECK(status IN ('pending', 'in_progress', 'completed', 'failed', 'rolled_back')),\n total_items INTEGER DEFAULT 0,\n processed_items INTEGER DEFAULT 0,\n failed_items INTEGER DEFAULT 0,\n skipped_items INTEGER DEFAULT 0,\n\n -- Current position (for resume)\n current_batch INTEGER DEFAULT 0,\n last_processed_id TEXT,\n\n -- Source/destination info\n source_path TEXT,\n source_type TEXT,\n destination_path TEXT,\n\n -- Backup info\n backup_path TEXT,\n backup_created_at INTEGER,\n\n -- Error tracking\n last_error TEXT,\n errors TEXT, -- JSON array of errors\n\n -- Timestamps\n started_at INTEGER,\n completed_at INTEGER,\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000)\n);\n\n-- ============================================\n-- SESSION MANAGEMENT\n-- ============================================\n\n-- Sessions for context persistence\nCREATE TABLE IF NOT EXISTS sessions (\n id TEXT PRIMARY KEY,\n\n -- Session state\n state TEXT NOT NULL, -- JSON object with full session state\n status TEXT DEFAULT 'active' CHECK(status IN ('active', 'paused', 'completed', 'expired')),\n\n -- Context\n project_path TEXT,\n branch TEXT,\n\n -- Metrics\n tasks_completed INTEGER DEFAULT 0,\n patterns_learned INTEGER DEFAULT 0,\n\n -- Timestamps\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n expires_at INTEGER\n);\n\n-- ============================================\n-- VECTOR INDEX METADATA (for HNSW)\n-- ============================================\n\n-- Track HNSW index state\nCREATE TABLE IF NOT EXISTS vector_indexes (\n id TEXT PRIMARY KEY,\n name TEXT NOT NULL UNIQUE,\n\n -- Index configuration\n dimensions INTEGER NOT NULL,\n metric TEXT DEFAULT 'cosine' CHECK(metric IN ('cosine', 'euclidean', 'dot')),\n\n -- HNSW parameters\n hnsw_m INTEGER DEFAULT 16,\n hnsw_ef_construction INTEGER DEFAULT 200,\n hnsw_ef_search INTEGER DEFAULT 100,\n\n -- Quantization\n quantization_type TEXT CHECK(quantization_type IN ('none', 'scalar', 'product')),\n quantization_bits INTEGER DEFAULT 8,\n\n -- Statistics\n total_vectors INTEGER DEFAULT 0,\n last_rebuild_at INTEGER,\n\n created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000),\n updated_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now') * 1000)\n);\n\n-- ============================================\n-- GRAPH EDGES (ADR-130 Phase 1)\n-- Unified knowledge graph backend \u2014 sql.js canonical store\n-- ============================================\n\n-- Unified graph edges table (ADR-130)\n-- Node IDs use domain-prefixed format: {domain}:{uuid}\n-- where domain in (mem, agent, task, entity, span, pattern)\nCREATE TABLE IF NOT EXISTS graph_edges (\n id TEXT PRIMARY KEY, -- edge-{uuid}\n source_id TEXT NOT NULL, -- domain-prefixed node ID\n target_id TEXT NOT NULL, -- domain-prefixed node ID\n relation TEXT NOT NULL, -- e.g. \"caused\", \"depends-on\", \"imports\"\n weight REAL DEFAULT 1.0,\n -- Temporal / reliability semantics (ADR-130 \u00A7\"graph that forgets\" property)\n confidence REAL DEFAULT 1.0, -- [0,1]; updated by JUDGE step\n decay_rate REAL DEFAULT 0.0, -- per-day exponential decay applied at read time\n last_reinforced TEXT, -- ISO-8601; set when CONSOLIDATE re-touches edge\n witness_id TEXT, -- FK to verification/witness-fixes.json (ADR-103)\n -- Embedding storage: \"inline:{base64}\" | \"vector_indexes:{id}\" | NULL\n embedding_ref TEXT,\n metadata TEXT, -- JSON blob for plugin-specific fields\n created_at TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_graph_edges_source ON graph_edges (source_id);\nCREATE INDEX IF NOT EXISTS idx_graph_edges_target ON graph_edges (target_id);\nCREATE INDEX IF NOT EXISTS idx_graph_edges_relation ON graph_edges (relation);\nCREATE INDEX IF NOT EXISTS idx_graph_edges_reinforced ON graph_edges (last_reinforced);\n\n-- ============================================\n-- SYSTEM METADATA\n-- ============================================\n\nCREATE TABLE IF NOT EXISTS metadata (\n key TEXT PRIMARY KEY,\n value TEXT NOT NULL,\n updated_at INTEGER DEFAULT (strftime('%s', 'now') * 1000)\n);\n";
28
+ interface HNSWEntry {
29
+ id: string;
30
+ key: string;
31
+ namespace: string;
32
+ content: string;
33
+ }
34
+ interface HNSWIndex {
35
+ db: any;
36
+ entries: Map<string, HNSWEntry>;
37
+ dimensions: number;
38
+ initialized: boolean;
39
+ }
40
+ /**
41
+ * Get or create the HNSW index singleton
42
+ * Lazily initializes from SQLite data on first use
43
+ */
44
+ export declare function getHNSWIndex(options?: {
45
+ dbPath?: string;
46
+ dimensions?: number;
47
+ forceRebuild?: boolean;
48
+ }): Promise<HNSWIndex | null>;
49
+ /**
50
+ * Add entry to HNSW index (with automatic persistence)
51
+ */
52
+ export declare function addToHNSWIndex(id: string, embedding: number[], entry: HNSWEntry): Promise<boolean>;
53
+ /**
54
+ * Search HNSW index (150x faster than brute-force)
55
+ * Returns results sorted by similarity (highest first)
56
+ */
57
+ export declare function searchHNSWIndex(queryEmbedding: number[], options?: {
58
+ k?: number;
59
+ namespace?: string;
60
+ }): Promise<Array<{
61
+ id: string;
62
+ key: string;
63
+ content: string;
64
+ score: number;
65
+ namespace: string;
66
+ }> | null>;
67
+ /**
68
+ * Get HNSW index status
69
+ */
70
+ export declare function getHNSWStatus(): {
71
+ available: boolean;
72
+ initialized: boolean;
73
+ entryCount: number;
74
+ dimensions: number;
75
+ };
76
+ /**
77
+ * Clear the HNSW index (for rebuilding)
78
+ */
79
+ export declare function clearHNSWIndex(): void;
80
+ /**
81
+ * Invalidate the in-memory HNSW cache so the next search rebuilds from DB.
82
+ * Call this after deleting entries that had embeddings to prevent ghost
83
+ * vectors from appearing in search results.
84
+ */
85
+ export declare function rebuildSearchIndex(): void;
86
+ /**
87
+ * Quantize a Float32 embedding to Int8 (4x memory reduction)
88
+ * Uses symmetric quantization with scale factor stored per-vector
89
+ *
90
+ * @param embedding - Float32 embedding array
91
+ * @returns Quantized Int8 array with scale factor
92
+ */
93
+ export declare function quantizeInt8(embedding: number[] | Float32Array): {
94
+ quantized: Int8Array;
95
+ scale: number;
96
+ zeroPoint: number;
97
+ };
98
+ /**
99
+ * Dequantize Int8 back to Float32
100
+ *
101
+ * @param quantized - Int8 quantized array
102
+ * @param scale - Scale factor from quantization
103
+ * @param zeroPoint - Zero point (usually 0 for symmetric)
104
+ * @returns Float32Array
105
+ */
106
+ export declare function dequantizeInt8(quantized: Int8Array, scale: number, zeroPoint?: number): Float32Array;
107
+ /**
108
+ * Compute cosine similarity between quantized vectors
109
+ * Faster than dequantizing first
110
+ */
111
+ export declare function quantizedCosineSim(a: Int8Array, aScale: number, b: Int8Array, bScale: number): number;
112
+ /**
113
+ * Get quantization statistics for an embedding
114
+ */
115
+ export declare function getQuantizationStats(embedding: number[] | Float32Array): {
116
+ originalBytes: number;
117
+ quantizedBytes: number;
118
+ compressionRatio: number;
119
+ };
120
+ /**
121
+ * Batch cosine similarity - compute query against multiple vectors
122
+ * Optimized for V8 JIT with typed arrays
123
+ * ~50μs per 1000 vectors (384-dim)
124
+ */
125
+ export declare function batchCosineSim(query: Float32Array | number[], vectors: (Float32Array | number[])[]): Float32Array;
126
+ /**
127
+ * Softmax normalization for attention scores
128
+ * Numerically stable implementation
129
+ */
130
+ export declare function softmaxAttention(scores: Float32Array, temperature?: number): Float32Array;
131
+ /**
132
+ * Top-K selection with partial sort (O(n + k log k))
133
+ * More efficient than full sort for small k
134
+ */
135
+ export declare function topKIndices(scores: Float32Array, k: number): number[];
136
+ /**
137
+ * Flash Attention-style search
138
+ * Combines batch similarity, softmax, and top-k in one pass
139
+ * Returns indices and attention weights
140
+ */
141
+ export declare function flashAttentionSearch(query: Float32Array | number[], vectors: (Float32Array | number[])[], options?: {
142
+ k?: number;
143
+ temperature?: number;
144
+ threshold?: number;
145
+ }): {
146
+ indices: number[];
147
+ scores: Float32Array;
148
+ weights: Float32Array;
149
+ };
150
+ /**
151
+ * Initial metadata to insert after schema creation
152
+ */
153
+ export declare function getInitialMetadata(backend: string): string;
154
+ /**
155
+ * Memory initialization result
156
+ */
157
+ export interface MemoryInitResult {
158
+ success: boolean;
159
+ /**
160
+ * #1791.6 — set when an existing database was found and `force` was not
161
+ * passed. The call is treated as a successful no-op rather than an error.
162
+ */
163
+ alreadyExists?: boolean;
164
+ backend: string;
165
+ dbPath: string;
166
+ schemaVersion: string;
167
+ tablesCreated: string[];
168
+ indexesCreated: string[];
169
+ features: {
170
+ vectorEmbeddings: boolean;
171
+ patternLearning: boolean;
172
+ temporalDecay: boolean;
173
+ hnswIndexing: boolean;
174
+ migrationTracking: boolean;
175
+ };
176
+ /** ADR-053: Controllers activated via ControllerRegistry */
177
+ controllers?: {
178
+ activated: string[];
179
+ failed: string[];
180
+ initTimeMs: number;
181
+ };
182
+ error?: string;
183
+ }
184
+ /**
185
+ * Ensure memory_entries table has all required columns
186
+ * Adds missing columns for older databases (e.g., 'content' column)
187
+ */
188
+ export declare function ensureSchemaColumns(dbPath: string): Promise<{
189
+ success: boolean;
190
+ columnsAdded: string[];
191
+ error?: string;
192
+ }>;
193
+ /**
194
+ * Check for legacy database installations and migrate if needed
195
+ */
196
+ export declare function checkAndMigrateLegacy(options: {
197
+ dbPath: string;
198
+ verbose?: boolean;
199
+ }): Promise<{
200
+ needsMigration: boolean;
201
+ legacyVersion?: string;
202
+ legacyEntries?: number;
203
+ migrated?: boolean;
204
+ migratedCount?: number;
205
+ }>;
206
+ /**
207
+ * Initialize the memory database properly using sql.js
208
+ */
209
+ export declare function initializeMemoryDatabase(options: {
210
+ backend?: string;
211
+ dbPath?: string;
212
+ force?: boolean;
213
+ verbose?: boolean;
214
+ migrate?: boolean;
215
+ }): Promise<MemoryInitResult>;
216
+ /**
217
+ * Check if memory database is properly initialized
218
+ */
219
+ export declare function checkMemoryInitialization(dbPath?: string): Promise<{
220
+ initialized: boolean;
221
+ version?: string;
222
+ backend?: string;
223
+ features?: {
224
+ vectorEmbeddings: boolean;
225
+ patternLearning: boolean;
226
+ temporalDecay: boolean;
227
+ };
228
+ tables?: string[];
229
+ }>;
230
+ /**
231
+ * Apply temporal decay to patterns
232
+ * Reduces confidence of patterns that haven't been used recently
233
+ */
234
+ export declare function applyTemporalDecay(dbPath?: string): Promise<{
235
+ success: boolean;
236
+ patternsDecayed: number;
237
+ error?: string;
238
+ }>;
239
+ /**
240
+ * Lazy load ONNX embedding model
241
+ * Only loads when first embedding is requested
242
+ */
243
+ export declare function loadEmbeddingModel(options?: {
244
+ modelPath?: string;
245
+ verbose?: boolean;
246
+ /**
247
+ * Bypass the AgentDB bridge tier and load a genuinely LOCAL model.
248
+ * The bridge tier caches `{ loaded: true, model: null }` ("bridge handles
249
+ * embedding") — correct for generateEmbedding(), but it poisons the
250
+ * bridge-free generateLocalEmbedding() path (#2312), which sees a loaded
251
+ * state with no local model and silently falls to hash ('mock').
252
+ */
253
+ skipBridge?: boolean;
254
+ }): Promise<{
255
+ success: boolean;
256
+ dimensions: number;
257
+ modelName: string;
258
+ loadTime?: number;
259
+ error?: string;
260
+ }>;
261
+ /**
262
+ * Generate real embedding for text
263
+ * Uses ONNX model if available, falls back to deterministic hash
264
+ *
265
+ * AUDIT #3: the `backend` field is the authoritative signal for whether the
266
+ * returned vector carries real ONNX semantics ('onnx') or the deterministic
267
+ * hash fallback ('mock'). The hash fallback produces inverted/meaningless
268
+ * semantics, so operators MUST be able to tell the two apart even when the
269
+ * `model` string reports a real model name (e.g. the AgentDB bridge always
270
+ * labels its output 'Xenova/all-MiniLM-L6-v2' regardless of whether AgentDB's
271
+ * own embedder is real or stubbed). Set `backend` truthfully by the path that
272
+ * actually produced the vector. Do NOT change the embedding math.
273
+ */
274
+ export declare function generateEmbedding(text: string): Promise<{
275
+ embedding: number[];
276
+ dimensions: number;
277
+ model: string;
278
+ backend: 'onnx' | 'mock';
279
+ }>;
280
+ /**
281
+ * Generate an embedding using ONLY the local model chain (transformers.js /
282
+ * swarmvector ONNX / hash fallback) — never the AgentDB bridge.
283
+ *
284
+ * #2312: this MUST stay bridge-free. `memory-bridge.ts` rescues a degraded
285
+ * agentdb embedder by delegating to this module; if that delegation went
286
+ * through `generateEmbedding` (bridge-first), the call would re-enter the
287
+ * patched `agentdb.embedder.embed` and recurse unboundedly:
288
+ *
289
+ * generateEmbedding → bridgeGenerateEmbedding → embedder.embed (patched)
290
+ * → generateEmbedding → … (heap OOM at ~4 GB on CI, no stack overflow
291
+ * because the cycle is async/microtask-driven)
292
+ *
293
+ * Keeping the local chain as its own export breaks that cycle structurally.
294
+ */
295
+ export declare function generateLocalEmbedding(text: string): Promise<{
296
+ embedding: number[];
297
+ dimensions: number;
298
+ model: string;
299
+ backend: 'onnx' | 'mock';
300
+ }>;
301
+ /**
302
+ * Generate embeddings for multiple texts
303
+ * Uses parallel execution for API-based providers (2-4x faster)
304
+ * Note: Local ONNX inference is CPU-bound, so parallelism has limited benefit
305
+ *
306
+ * @param texts - Array of texts to embed
307
+ * @param options - Batch options
308
+ * @returns Array of embedding results with timing info
309
+ */
310
+ export declare function generateBatchEmbeddings(texts: string[], options?: {
311
+ concurrency?: number;
312
+ onProgress?: (completed: number, total: number) => void;
313
+ }): Promise<{
314
+ results: Array<{
315
+ text: string;
316
+ embedding: number[];
317
+ dimensions: number;
318
+ model: string;
319
+ }>;
320
+ totalTime: number;
321
+ avgTime: number;
322
+ }>;
323
+ /**
324
+ * Verify memory initialization works correctly
325
+ * Tests: write, read, search, patterns
326
+ */
327
+ export declare function verifyMemoryInit(dbPath: string, options?: {
328
+ verbose?: boolean;
329
+ }): Promise<{
330
+ success: boolean;
331
+ tests: {
332
+ name: string;
333
+ passed: boolean;
334
+ details?: string;
335
+ duration?: number;
336
+ }[];
337
+ summary: {
338
+ passed: number;
339
+ failed: number;
340
+ total: number;
341
+ };
342
+ }>;
343
+ /**
344
+ * Store an entry directly using sql.js
345
+ * This bypasses MCP and writes directly to the database
346
+ */
347
+ export declare function storeEntry(options: {
348
+ key: string;
349
+ value: string;
350
+ namespace?: string;
351
+ generateEmbeddingFlag?: boolean;
352
+ tags?: string[];
353
+ ttl?: number;
354
+ dbPath?: string;
355
+ upsert?: boolean;
356
+ }): Promise<{
357
+ success: boolean;
358
+ id: string;
359
+ embedding?: {
360
+ dimensions: number;
361
+ model: string;
362
+ };
363
+ error?: string;
364
+ }>;
365
+ /**
366
+ * Search entries using sql.js with vector similarity
367
+ * Uses HNSW index for 150x faster search when available
368
+ */
369
+ export declare function searchEntries(options: {
370
+ query: string;
371
+ namespace?: string;
372
+ limit?: number;
373
+ threshold?: number;
374
+ dbPath?: string;
375
+ }): Promise<{
376
+ success: boolean;
377
+ results: {
378
+ id: string;
379
+ key: string;
380
+ content: string;
381
+ score: number;
382
+ namespace: string;
383
+ }[];
384
+ searchTime: number;
385
+ error?: string;
386
+ }>;
387
+ /**
388
+ * List all entries from the memory database
389
+ */
390
+ export declare function listEntries(options: {
391
+ namespace?: string;
392
+ limit?: number;
393
+ offset?: number;
394
+ dbPath?: string;
395
+ /** #2073: When true, include the entry's full `content` string in each result. */
396
+ includeContent?: boolean;
397
+ }): Promise<{
398
+ success: boolean;
399
+ entries: {
400
+ id: string;
401
+ key: string;
402
+ namespace: string;
403
+ size: number;
404
+ accessCount: number;
405
+ createdAt: string;
406
+ updatedAt: string;
407
+ hasEmbedding: boolean;
408
+ /** #2073: Present when `includeContent: true` was requested. */
409
+ content?: string;
410
+ }[];
411
+ total: number;
412
+ error?: string;
413
+ }>;
414
+ /**
415
+ * Get a specific entry from the memory database
416
+ */
417
+ export declare function getEntry(options: {
418
+ key: string;
419
+ namespace?: string;
420
+ dbPath?: string;
421
+ }): Promise<{
422
+ success: boolean;
423
+ found: boolean;
424
+ entry?: {
425
+ id: string;
426
+ key: string;
427
+ namespace: string;
428
+ content: string;
429
+ accessCount: number;
430
+ createdAt: string;
431
+ updatedAt: string;
432
+ hasEmbedding: boolean;
433
+ tags: string[];
434
+ };
435
+ error?: string;
436
+ }>;
437
+ /**
438
+ * Delete a memory entry by key and namespace
439
+ * Issue #980: Properly supports namespaced entries
440
+ */
441
+ export declare function deleteEntry(options: {
442
+ key: string;
443
+ namespace?: string;
444
+ dbPath?: string;
445
+ }): Promise<{
446
+ success: boolean;
447
+ deleted: boolean;
448
+ key: string;
449
+ namespace: string;
450
+ remainingEntries: number;
451
+ error?: string;
452
+ }>;
453
+ declare const _default: {
454
+ initializeMemoryDatabase: typeof initializeMemoryDatabase;
455
+ checkMemoryInitialization: typeof checkMemoryInitialization;
456
+ checkAndMigrateLegacy: typeof checkAndMigrateLegacy;
457
+ ensureSchemaColumns: typeof ensureSchemaColumns;
458
+ applyTemporalDecay: typeof applyTemporalDecay;
459
+ loadEmbeddingModel: typeof loadEmbeddingModel;
460
+ generateEmbedding: typeof generateEmbedding;
461
+ verifyMemoryInit: typeof verifyMemoryInit;
462
+ storeEntry: typeof storeEntry;
463
+ searchEntries: typeof searchEntries;
464
+ listEntries: typeof listEntries;
465
+ getEntry: typeof getEntry;
466
+ deleteEntry: typeof deleteEntry;
467
+ rebuildSearchIndex: typeof rebuildSearchIndex;
468
+ MEMORY_SCHEMA_V3: string;
469
+ getInitialMetadata: typeof getInitialMetadata;
470
+ };
471
+ export default _default;
472
+ //# sourceMappingURL=memory-initializer.d.ts.map