@smake/eigen 1.1.0 → 1.1.1

package/eigen/Eigen/SparseCore

@@ -17,22 +17,24 @@
 #include <cstdlib>
 #include <cstring>
 #include <algorithm>
+#include <numeric>
 
-/** 
-  * \defgroup SparseCore_Module SparseCore module
-  *
-  * This module provides a sparse matrix representation, and basic associated matrix manipulations
-  * and operations.
-  *
-  * See the \ref TutorialSparse "Sparse tutorial"
-  *
-  * \code
-  * #include <Eigen/SparseCore>
-  * \endcode
-  *
-  * This module depends on: Core.
-  */
+/**
+ * \defgroup SparseCore_Module SparseCore module
+ *
+ * This module provides a sparse matrix representation, and basic associated matrix manipulations
+ * and operations.
+ *
+ * See the \ref TutorialSparse "Sparse tutorial"
+ *
+ * \code
+ * #include <Eigen/SparseCore>
+ * \endcode
+ *
+ * This module depends on: Core.
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SparseCore/SparseUtil.h"
 #include "src/SparseCore/SparseMatrixBase.h"
 #include "src/SparseCore/SparseAssign.h"
@@ -41,7 +43,6 @@
 #include "src/SparseCore/SparseCompressedBase.h"
 #include "src/SparseCore/SparseMatrix.h"
 #include "src/SparseCore/SparseMap.h"
-#include "src/SparseCore/MappedSparseMatrix.h"
 #include "src/SparseCore/SparseVector.h"
 #include "src/SparseCore/SparseRef.h"
 #include "src/SparseCore/SparseCwiseUnaryOp.h"
@@ -62,8 +63,8 @@
 #include "src/SparseCore/SparsePermutation.h"
 #include "src/SparseCore/SparseFuzzy.h"
 #include "src/SparseCore/SparseSolverBase.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SPARSECORE_MODULE_H
-
+#endif  // EIGEN_SPARSECORE_MODULE_H

package/eigen/Eigen/SparseLU

@@ -13,20 +13,19 @@
 
 #include "SparseCore"
 
-/** 
-  * \defgroup SparseLU_Module SparseLU module
-  * This module defines a supernodal factorization of general sparse matrices.
-  * The code is fully optimized for supernode-panel updates with specialized kernels.
-  * Please, see the documentation of the SparseLU class for more details.
-  */
+/**
+ * \defgroup SparseLU_Module SparseLU module
+ * This module defines a supernodal factorization of general sparse matrices.
+ * The code is fully optimized for supernode-panel updates with specialized kernels.
+ * Please, see the documentation of the SparseLU class for more details.
+ */
 
 // Ordering interface
 #include "OrderingMethods"
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-#include "src/SparseLU/SparseLU_gemm_kernel.h"
-
+// IWYU pragma: begin_exports
 #include "src/SparseLU/SparseLU_Structs.h"
 #include "src/SparseLU/SparseLU_SupernodalMatrix.h"
 #include "src/SparseLU/SparseLUImpl.h"
@@ -44,7 +43,8 @@
 #include "src/SparseLU/SparseLU_pruneL.h"
 #include "src/SparseLU/SparseLU_Utils.h"
 #include "src/SparseLU/SparseLU.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SPARSELU_MODULE_H
+#endif  // EIGEN_SPARSELU_MODULE_H

package/eigen/Eigen/SparseQR

@@ -13,23 +13,25 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** \defgroup SparseQR_Module SparseQR module
-  * \brief Provides QR decomposition for sparse matrices
-  * 
-  * This module provides a simplicial version of the left-looking Sparse QR decomposition. 
-  * The columns of the input matrix should be reordered to limit the fill-in during the 
-  * decomposition. Built-in methods (COLAMD, AMD) or external  methods (METIS) can be used to this end.
-  * See the \link OrderingMethods_Module OrderingMethods\endlink module for the list 
-  * of built-in and external ordering methods.
-  * 
-  * \code
-  * #include <Eigen/SparseQR>
-  * \endcode
-  * 
-  * 
-  */
+ * \brief Provides QR decomposition for sparse matrices
+ *
+ * This module provides a simplicial version of the left-looking Sparse QR decomposition.
+ * The columns of the input matrix should be reordered to limit the fill-in during the
+ * decomposition. Built-in methods (COLAMD, AMD) or external  methods (METIS) can be used to this end.
+ * See the \link OrderingMethods_Module OrderingMethods\endlink module for the list
+ * of built-in and external ordering methods.
+ *
+ * \code
+ * #include <Eigen/SparseQR>
+ * \endcode
+ *
+ *
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SparseCore/SparseColEtree.h"
 #include "src/SparseQR/SparseQR.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 

package/eigen/Eigen/StdDeque

@@ -14,14 +14,17 @@
 #include "Core"
 #include <deque>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_DEQUE_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdDeque.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDDEQUE_MODULE_H
+#endif  // EIGEN_STDDEQUE_MODULE_H

package/eigen/Eigen/StdList

@@ -13,14 +13,17 @@
 #include "Core"
 #include <list>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_LIST_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdList.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDLIST_MODULE_H
+#endif  // EIGEN_STDLIST_MODULE_H

package/eigen/Eigen/StdVector

@@ -14,14 +14,17 @@
 #include "Core"
 #include <vector>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_VECTOR_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdVector.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDVECTOR_MODULE_H
+#endif  // EIGEN_STDVECTOR_MODULE_H

package/eigen/Eigen/SuperLUSupport

@@ -26,39 +26,45 @@ typedef int int_t;
 // If EMPTY was already defined then we don't undef it.
 
 #if defined(EIGEN_EMPTY_WAS_ALREADY_DEFINED)
-# undef EIGEN_EMPTY_WAS_ALREADY_DEFINED
+#undef EIGEN_EMPTY_WAS_ALREADY_DEFINED
 #elif defined(EMPTY)
-# undef EMPTY
+#undef EMPTY
 #endif
 
 #define SUPERLU_EMPTY (-1)
 
-namespace Eigen { struct SluMatrix; }
+namespace Eigen {
+struct SluMatrix;
+}
 
 /** \ingroup Support_modules
-  * \defgroup SuperLUSupport_Module SuperLUSupport module
-  *
-  * This module provides an interface to the <a href="http://crd-legacy.lbl.gov/~xiaoye/SuperLU/">SuperLU</a> library.
-  * It provides the following factorization class:
-  * - class SuperLU: a supernodal sequential LU factorization.
-  * - class SuperILU: a supernodal sequential incomplete LU factorization (to be used as a preconditioner for iterative methods).
-  *
-  * \warning This wrapper requires at least versions 4.0 of SuperLU. The 3.x versions are not supported.
-  *
-  * \warning When including this module, you have to use SUPERLU_EMPTY instead of EMPTY which is no longer defined because it is too polluting.
-  *
-  * \code
-  * #include <Eigen/SuperLUSupport>
-  * \endcode
-  *
-  * In order to use this module, the superlu headers must be accessible from the include paths, and your binary must be linked to the superlu library and its dependencies.
-  * The dependencies depend on how superlu has been compiled.
-  * For a cmake based project, you can use our FindSuperLU.cmake module to help you in this task.
-  *
-  */
+ * \defgroup SuperLUSupport_Module SuperLUSupport module
+ *
+ * This module provides an interface to the <a href="http://crd-legacy.lbl.gov/~xiaoye/SuperLU/">SuperLU</a> library.
+ * It provides the following factorization class:
+ * - class SuperLU: a supernodal sequential LU factorization.
+ * - class SuperILU: a supernodal sequential incomplete LU factorization (to be used as a preconditioner for iterative
+ * methods).
+ *
+ * \warning This wrapper requires at least versions 4.0 of SuperLU. The 3.x versions are not supported.
+ *
+ * \warning When including this module, you have to use SUPERLU_EMPTY instead of EMPTY which is no longer defined
+ * because it is too polluting.
+ *
+ * \code
+ * #include <Eigen/SuperLUSupport>
+ * \endcode
+ *
+ * In order to use this module, the superlu headers must be accessible from the include paths, and your binary must be
+ * linked to the superlu library and its dependencies. The dependencies depend on how superlu has been compiled. For a
+ * cmake based project, you can use our FindSuperLU.cmake module to help you in this task.
+ *
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SuperLUSupport/SuperLUSupport.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SUPERLUSUPPORT_MODULE_H
+#endif  // EIGEN_SUPERLUSUPPORT_MODULE_H

package/eigen/Eigen/ThreadPool

@@ -0,0 +1,80 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_THREADPOOL_MODULE_H
+#define EIGEN_THREADPOOL_MODULE_H
+
+#include "Core"
+
+#include "src/Core/util/DisableStupidWarnings.h"
+
+/** \defgroup ThreadPool_Module ThreadPool Module
+ *
+ * This module provides 2 threadpool implementations
+ *  - a simple reference implementation
+ *  - a faster non blocking implementation
+ *
+ * \code
+ * #include <Eigen/ThreadPool>
+ * \endcode
+ */
+
+#include <cstddef>
+#include <cstring>
+#include <time.h>
+
+#include <vector>
+#include <atomic>
+#include <condition_variable>
+#include <deque>
+#include <mutex>
+#include <thread>
+#include <functional>
+#include <memory>
+#include <utility>
+
+// There are non-parenthesized calls to "max" in the  <unordered_map> header,
+// which trigger a check in test/main.h causing compilation to fail.
+// We work around the check here by removing the check for max in
+// the case where we have to emulate thread_local.
+#ifdef max
+#undef max
+#endif
+#include <unordered_map>
+
+#include "src/Core/util/Meta.h"
+#include "src/Core/util/MaxSizeVector.h"
+
+#ifndef EIGEN_MUTEX
+#define EIGEN_MUTEX std::mutex
+#endif
+#ifndef EIGEN_MUTEX_LOCK
+#define EIGEN_MUTEX_LOCK std::unique_lock<std::mutex>
+#endif
+#ifndef EIGEN_CONDVAR
+#define EIGEN_CONDVAR std::condition_variable
+#endif
+
+// IWYU pragma: begin_exports
+#include "src/ThreadPool/ThreadLocal.h"
+#include "src/ThreadPool/ThreadYield.h"
+#include "src/ThreadPool/ThreadCancel.h"
+#include "src/ThreadPool/EventCount.h"
+#include "src/ThreadPool/RunQueue.h"
+#include "src/ThreadPool/ThreadPoolInterface.h"
+#include "src/ThreadPool/ThreadEnvironment.h"
+#include "src/ThreadPool/Barrier.h"
+#include "src/ThreadPool/NonBlockingThreadPool.h"
+#include "src/ThreadPool/CoreThreadPoolDevice.h"
+#include "src/ThreadPool/ForkJoin.h"
+// IWYU pragma: end_exports
+
+#include "src/Core/util/ReenableStupidWarnings.h"
+
+#endif  // EIGEN_CXX11_THREADPOOL_MODULE_H

package/eigen/Eigen/UmfPackSupport

@@ -17,24 +17,26 @@ extern "C" {
 }
 
 /** \ingroup Support_modules
-  * \defgroup UmfPackSupport_Module UmfPackSupport module
-  *
-  * This module provides an interface to the UmfPack library which is part of the <a href="http://www.suitesparse.com">suitesparse</a> package.
-  * It provides the following factorization class:
-  * - class UmfPackLU: a multifrontal sequential LU factorization.
-  *
-  * \code
-  * #include <Eigen/UmfPackSupport>
-  * \endcode
-  *
-  * In order to use this module, the umfpack headers must be accessible from the include paths, and your binary must be linked to the umfpack library and its dependencies.
-  * The dependencies depend on how umfpack has been compiled.
-  * For a cmake based project, you can use our FindUmfPack.cmake module to help you in this task.
-  *
-  */
-
+ * \defgroup UmfPackSupport_Module UmfPackSupport module
+ *
+ * This module provides an interface to the UmfPack library which is part of the <a
+ * href="http://www.suitesparse.com">suitesparse</a> package. It provides the following factorization class:
+ * - class UmfPackLU: a multifrontal sequential LU factorization.
+ *
+ * \code
+ * #include <Eigen/UmfPackSupport>
+ * \endcode
+ *
+ * In order to use this module, the umfpack headers must be accessible from the include paths, and your binary must be
+ * linked to the umfpack library and its dependencies. The dependencies depend on how umfpack has been compiled. For a
+ * cmake based project, you can use our FindUmfPack.cmake module to help you in this task.
+ *
+ */
+
+// IWYU pragma: begin_exports
 #include "src/UmfPackSupport/UmfPackSupport.h"
+// IWYU pragma: endexports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_UMFPACKSUPPORT_MODULE_H
+#endif  // EIGEN_UMFPACKSUPPORT_MODULE_H

package/eigen/Eigen/Version

@@ -0,0 +1,14 @@
+#ifndef EIGEN_VERSION_H
+#define EIGEN_VERSION_H
+
+// The "WORLD" version will forever remain "3" for the "Eigen3" library.
+#define EIGEN_WORLD_VERSION 3
+// As of Eigen3 5.0.0, we have moved to Semantic Versioning (semver.org).
+#define EIGEN_MAJOR_VERSION 5
+#define EIGEN_MINOR_VERSION 0
+#define EIGEN_PATCH_VERSION 1
+#define EIGEN_PRERELEASE_VERSION ""
+#define EIGEN_BUILD_VERSION ""
+#define EIGEN_VERSION_STRING "5.0.1"
+
+#endif  // EIGEN_VERSION_H