@sjcrh/proteinpaint-client 2.226.0 → 2.227.1

package/dist/imagePlot-3B3BXI6I.js

@@ -1,152 +0,0 @@
-import {
-  PlotBase,
-  controlsInit
-} from "./chunk-DPWSIN62.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KZ54E2FU.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-DOC3HBOV.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import {
-  dofetch3
-} from "./chunk-6V7ITU5F.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-KUOXZIH4.js";
-import "./chunk-T2W4JHWJ.js";
-import "./chunk-2N345NXD.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// plots/imagePlot.ts
-var ImagePlot = class _ImagePlot extends PlotBase {
-  static {
-    this.type = "imagePlot";
-  }
-  constructor(opts, api) {
-    super(opts, api);
-    this.type = _ImagePlot.type;
-    if (this.opts?.header) {
-      if (this.opts?.headerText)
-        this.opts.header.append("span").style("padding-right", "5px").text(this.opts.headerText);
-      this.opts.header.append("span").text("IMAGE PLOT").style("font-size", "0.7em").style("opacity", 0.6);
-    }
-  }
-  getState(appState) {
-    const config = appState.plots.find((p) => p.id === this.id);
-    if (!config) {
-      throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
-    }
-    return {
-      config,
-      termfilter: appState.termfilter,
-      vocab: appState.vocab
-    };
-  }
-  async init(appState) {
-    const config = this.getState(appState).config;
-    const holder = this.opts.holder.append("div").attr("data-testid", "sjpp-imagePlot-holder");
-    this.dom = {
-      holder,
-      controlsHolder: holder.append("div").attr("data-testid", "sjpp-imagePlot-controlsDiv").style("display", "inline-block"),
-      imageHolder: holder.append("div").attr("data-testid", "sjpp-imagePlot-imagesDiv").style("display", "inline-block")
-    };
-    const sampleId = config.sample?.sampleId || config.sample?.sID;
-    let images;
-    if (config?.imgDir) {
-      const img = await dofetch3(
-        `img?file=${config.imgDir.folder}${config.imgDir.folder.endsWith("/") ? "" : "/"}${sampleId}/${config.imgDir.fileName}`
-      );
-      if (!img || img?.error) throw new Error(img?.error || "Error fetching image");
-      images = [img];
-    } else {
-      const result = await this.vocabApi.getSampleImages(sampleId);
-      if (result.error) throw new Error(result.error);
-      images = result.images;
-    }
-    for (const img of images) {
-      this.dom.imageHolder.append("img").style("padding", "10px").attr("src", img.src).attr("width", config.settings.imagePlot.width).attr("height", config.settings.imagePlot.height);
-    }
-  }
-  async setControls() {
-    this.components = {
-      controls: await controlsInit({
-        app: this.app,
-        id: this.id,
-        holder: this.dom.controlsHolder,
-        inputs: [
-          {
-            label: "Image width",
-            type: "number",
-            chartType: this.type,
-            settingsKey: "width"
-          },
-          {
-            label: "Image height",
-            type: "number",
-            chartType: this.type,
-            settingsKey: "height"
-          }
-        ]
-      })
-    };
-  }
-  async main() {
-  }
-};
-async function getPlotConfig(opts) {
-  const settings = getDefaultImagePlotSettings();
-  if (opts.settings) copyMerge(settings, opts.settings);
-  const config = {
-    settings: {
-      controls: {
-        isOpen: false
-      },
-      imagePlot: settings
-    }
-  };
-  return copyMerge(config, opts);
-}
-function getDefaultImagePlotSettings() {
-  return {
-    width: 500,
-    height: 500
-  };
-}
-var imagePlotInit = getCompInit(ImagePlot);
-var componentInit = imagePlotInit;
-async function renderImagePlot(state, holder, sample) {
-  const opts = {
-    holder,
-    state: {
-      vocab: state.vocab,
-      plots: [
-        {
-          chartType: "imagePlot",
-          sample
-        }
-      ]
-    }
-  };
-  const plot = await import("./plot.app-I23IAZ3Z.js");
-  await plot.appInit(opts);
-}
-export {
-  componentInit,
-  getDefaultImagePlotSettings,
-  getPlotConfig,
-  imagePlotInit,
-  renderImagePlot
-};
-//# sourceMappingURL=imagePlot-3B3BXI6I.js.map

package/dist/importPlot-JDVH7Q2Z.js

@@ -1,8 +0,0 @@
-import {
-  importPlot
-} from "./chunk-KZ54E2FU.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  importPlot
-};
-//# sourceMappingURL=importPlot-JDVH7Q2Z.js.map

package/dist/isoformExpression-UFHY5LB2.js

@@ -1,31 +0,0 @@
-import {
-  SearchHandler,
-  filterIsoforms
-} from "./chunk-AAQDXVQT.js";
-import "./chunk-DPWSIN62.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KZ54E2FU.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-DOC3HBOV.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-6V7ITU5F.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-KUOXZIH4.js";
-import "./chunk-T2W4JHWJ.js";
-import "./chunk-2N345NXD.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  SearchHandler,
-  filterIsoforms
-};
-//# sourceMappingURL=isoformExpression-UFHY5LB2.js.map

package/dist/isoformExpression.unit.spec-U6GDCNQR.js

@@ -1,233 +0,0 @@
-import {
-  SearchHandler,
-  filterIsoforms
-} from "./chunk-AAQDXVQT.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-DPWSIN62.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KZ54E2FU.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-DOC3HBOV.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-6V7ITU5F.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-KUOXZIH4.js";
-import "./chunk-T2W4JHWJ.js";
-import {
-  ISOFORM_EXPRESSION
-} from "./chunk-2N345NXD.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/isoformExpression.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function mockGm(isoform) {
-  return { isoform, chr: "chr1", start: 0, stop: 100, exon: [[0, 100]] };
-}
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/isoformExpression -***-");
-  test.end();
-});
-(0, import_tape.default)("selectIsoform() should call callback with configured unit from termdbConfig", (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  handler.app = {
-    vocabApi: {
-      termdbConfig: {
-        queries: {
-          isoformExpression: { unit: "TPM" }
-        }
-      }
-    }
-  };
-  handler.selectIsoform("ENST00000269305", "TP53");
-  test.equal(selected?.isoform, "ENST00000269305", "Should pass selected isoform");
-  test.equal(selected?.gene, "TP53", "Should pass gene");
-  test.equal(selected?.name, "ENST00000269305 TPM", "Should include configured unit in term name");
-  test.equal(selected?.type, ISOFORM_EXPRESSION, "Should set type to isoformExpression");
-  test.end();
-});
-(0, import_tape.default)("selectIsoform() should use default unit when not configured", (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  handler.app = {
-    vocabApi: {
-      termdbConfig: {
-        queries: {}
-      }
-    }
-  };
-  handler.selectIsoform("ENST00000269305", "TP53");
-  test.equal(selected?.isoform, "ENST00000269305", "Should pass selected isoform");
-  test.equal(selected?.name, "ENST00000269305 TPM", "Should use default unit TPM");
-  test.equal(selected?.type, ISOFORM_EXPRESSION, "Should set type to isoformExpression");
-  test.end();
-});
-(0, import_tape.default)("selectCollection() should create a custom termCollection from multiple isoforms", (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  handler.app = {
-    vocabApi: {
-      termdbConfig: {
-        queries: {
-          isoformExpression: { unit: "TPM" }
-        }
-      }
-    }
-  };
-  handler.selectCollection([mockGm("ENST00000256078"), mockGm("ENST00000311936")], "KRAS");
-  test.equal(selected?.type, "termCollection", "Should set type to termCollection");
-  test.equal(selected?.isCustom, true, "Should set isCustom flag");
-  test.equal(selected?.memberType, "numeric", "Should set memberType to numeric");
-  test.equal(selected?.name, "KRAS Isoforms (TPM)", "Should include gene and unit in name");
-  test.equal(selected?.isleaf, true, "Should set isleaf");
-  test.ok(selected?.propsByTermId.ENST00000256078.color, "Should assign the first isoform a color");
-  test.ok(selected?.propsByTermId.ENST00000311936.color, "Should assign the second isoform a color");
-  test.notEqual(
-    selected?.propsByTermId.ENST00000256078.color,
-    selected?.propsByTermId.ENST00000311936.color,
-    "Should assign distinct member colors"
-  );
-  test.equal(selected?.termlst?.length, 2, "Should have 2 member terms");
-  const mt = selected.termlst[0];
-  test.equal(mt.id, "ENST00000256078", "Member term id should be the isoform ID");
-  test.equal(mt.name, "ENST00000256078", "Member term name should be the isoform ID");
-  test.equal(mt.type, "isoformExpression", "Member term type should be isoformExpression");
-  test.equal(mt.isoform, "ENST00000256078", "Member term should carry isoform field");
-  test.end();
-});
-(0, import_tape.default)("selectCollection() should use default unit when not configured", (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  handler.app = {
-    vocabApi: {
-      termdbConfig: {
-        queries: {}
-      }
-    }
-  };
-  handler.selectCollection([mockGm("ENST00000256078"), mockGm("ENST00000311936")], "KRAS");
-  test.equal(selected?.name, "KRAS Isoforms (TPM)", "Should use default unit TPM");
-  test.end();
-});
-(0, import_tape.default)("selectCollection() renders fraction choices when requested", (test) => {
-  const handler = new SearchHandler();
-  const holder = select_default("body").append("div");
-  let selected;
-  handler.callback = (term) => {
-    selected = term;
-  };
-  handler.app = {
-    vocabApi: { termdbConfig: { queries: { isoformExpression: { unit: "TPM" } } } }
-  };
-  handler.termCollectionSelectionMode = "fraction";
-  handler.dom = { errDiv: holder.append("div"), isoformDiv: holder.append("div") };
-  handler.selectCollection([mockGm("ENST00000256078"), mockGm("ENST00000311936")], "KRAS");
-  test.ok(holder.text().includes("Denominator"), "renders denominator choices");
-  holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node().click();
-  test.equal(selected?.type, "TermCollectionTWFraction", "returns a fraction wrapper");
-  test.deepEqual(
-    selected?.q.denominators,
-    ["ENST00000256078", "ENST00000311936"],
-    "defaults every isoform as a denominator"
-  );
-  test.deepEqual(selected?.q.numerators, ["ENST00000256078"], "defaults only the first isoform as numerator");
-  test.equal(selected?.term.termlst.length, 2, "retains every isoform on the collection term");
-  holder.remove();
-  test.end();
-});
-(0, import_tape.default)("showIsoforms multi-select: single isoform calls selectIsoform, multiple calls selectCollection", (test) => {
-  const handler = new SearchHandler();
-  const calls = [];
-  handler.app = {
-    vocabApi: {
-      termdbConfig: {
-        queries: {
-          isoformExpression: { unit: "TPM" }
-        }
-      }
-    }
-  };
-  handler.selectIsoform = (isoform, gene) => {
-    calls.push({ method: "selectIsoform", args: { isoform, gene } });
-  };
-  handler.selectCollection = (gms, gene) => {
-    calls.push({ method: "selectCollection", args: { gms, gene } });
-  };
-  const onMultiSelect1 = (selected) => {
-    if (selected.length === 1) handler.selectIsoform(selected[0].isoform, "TP53");
-    else handler.selectCollection(selected, "TP53");
-  };
-  onMultiSelect1([mockGm("ENST00000269305")]);
-  test.equal(calls.length, 1, "Should have one call");
-  test.equal(calls[0].method, "selectIsoform", "Single isoform should call selectIsoform");
-  const onMultiSelect2 = (selected) => {
-    if (selected.length === 1) handler.selectIsoform(selected[0].isoform, "KRAS");
-    else handler.selectCollection(selected, "KRAS");
-  };
-  onMultiSelect2([mockGm("ENST00000256078"), mockGm("ENST00000311936")]);
-  test.equal(calls.length, 2, "Should have two calls total");
-  test.equal(calls[1].method, "selectCollection", "Multiple isoforms should call selectCollection");
-  test.equal(calls[1].args.gms.length, 2, "Should pass both gene models");
-  test.end();
-});
-(0, import_tape.default)("filterIsoforms() should return only ENST isoforms present in availableItems", (test) => {
-  const gmlst = [mockGm("ENST00000269305"), mockGm("ENST00000413465"), mockGm("NM_000546"), mockGm("ENST00000359597")];
-  const availableItems = ["ENST00000269305", "ENST00000359597"];
-  const result = filterIsoforms(gmlst, availableItems);
-  test.equal(result.length, 2, "Should return 2 matching isoforms");
-  test.equal(result[0].isoform, "ENST00000269305", "First match correct");
-  test.equal(result[1].isoform, "ENST00000359597", "Second match correct");
-  test.end();
-});
-(0, import_tape.default)("filterIsoforms() should exclude non-ENST isoforms even if in availableItems", (test) => {
-  const gmlst = [mockGm("NM_000546"), mockGm("NR_176326"), mockGm("ENST00000269305")];
-  const availableItems = ["NM_000546", "ENST00000269305"];
-  const result = filterIsoforms(gmlst, availableItems);
-  test.equal(result.length, 1, "Should only return ENST isoform");
-  test.equal(result[0].isoform, "ENST00000269305", "Should be the ENST match");
-  test.end();
-});
-(0, import_tape.default)("filterIsoforms() should return all ENST isoforms when availableItems is empty", (test) => {
-  const gmlst = [mockGm("ENST00000269305"), mockGm("ENST00000413465"), mockGm("NM_000546")];
-  const result = filterIsoforms(gmlst, []);
-  test.equal(result.length, 2, "Should return all ENST isoforms when no filter");
-  test.equal(result[0].isoform, "ENST00000269305", "First ENST correct");
-  test.equal(result[1].isoform, "ENST00000413465", "Second ENST correct");
-  test.end();
-});
-(0, import_tape.default)("filterIsoforms() should return empty array when no ENST isoforms match", (test) => {
-  const gmlst = [mockGm("ENST00000269305"), mockGm("ENST00000413465")];
-  const availableItems = ["ENST00000999999"];
-  const result = filterIsoforms(gmlst, availableItems);
-  test.equal(result.length, 0, "Should return empty when no matches");
-  test.end();
-});
-//# sourceMappingURL=isoformExpression.unit.spec-U6GDCNQR.js.map

package/dist/junction-W2STW5WW.js

@@ -1,32 +0,0 @@
-import {
-  SearchHandler,
-  getJunctionCustomTerms
-} from "./chunk-SJHWZZ4M.js";
-import "./chunk-FIWVGOSE.js";
-import "./chunk-DPWSIN62.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KZ54E2FU.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-DOC3HBOV.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-6V7ITU5F.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-KUOXZIH4.js";
-import "./chunk-T2W4JHWJ.js";
-import "./chunk-2N345NXD.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  SearchHandler,
-  getJunctionCustomTerms
-};
-//# sourceMappingURL=junction-W2STW5WW.js.map

package/dist/junction.unit.spec-R4DIBFLB.js

@@ -1,178 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-SJHWZZ4M.js";
-import {
-  makeJunctionCustomTerm
-} from "./chunk-FIWVGOSE.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-DPWSIN62.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KZ54E2FU.js";
-import "./chunk-CNFTQSNE.js";
-import "./chunk-DOC3HBOV.js";
-import "./chunk-TVJOSRCH.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-6V7ITU5F.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-KUOXZIH4.js";
-import "./chunk-T2W4JHWJ.js";
-import "./chunk-2N345NXD.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-PWYMHUXY.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/junction.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function makeJunction(id) {
-  return {
-    type: "junction",
-    id,
-    name: `Name ${id}`,
-    chr: "chr1",
-    start: 100,
-    stop: 200,
-    strand: "+",
-    info: {}
-  };
-}
-function getOpts(holder, dslabel, customTerms = [], callback = (_term) => {
-}, termCollectionSelectionMode) {
-  const state = { customTerms };
-  return {
-    holder,
-    callback,
-    termCollectionSelectionMode,
-    genomeObj: { name: "hg38" },
-    app: {
-      vocabApi: {
-        vocab: { dslabel },
-        state,
-        async deleteCustomTermById(id) {
-          const index = state.customTerms.findIndex((term) => term.id === id);
-          if (index !== -1) state.customTerms.splice(index, 1);
-        }
-      }
-    }
-  };
-}
-(0, import_tape.default)("\n", (test) => {
-  test.comment("-***- termdb/handlers/junction -***-");
-  test.end();
-});
-(0, import_tape.default)("init() shows the empty-state message", async (test) => {
-  const holder = select_default("body").append("div");
-  const handler = new SearchHandler();
-  await handler.init(getOpts(holder, "junction-handler-empty"));
-  test.ok(holder.text().includes("Junctions selected from genome browser"), "shows the empty-state instructions");
-  holder.remove();
-  test.end();
-});
-(0, import_tape.default)("ungrouped junctions render as selectable pills and can be deleted", async (test) => {
-  const holder = select_default("body").append("div");
-  const handler = new SearchHandler();
-  let selected;
-  const dslabel = "junction-handler-ungrouped";
-  const customTerms = [makeJunctionCustomTerm([makeJunction("junction-1")])];
-  await handler.init(
-    getOpts(holder, dslabel, customTerms, (term) => {
-      selected = term;
-    })
-  );
-  const pill = holder.select(".ts_pill");
-  test.equal(pill.text(), "Name junction-1", "renders the junction name in a pill");
-  pill.node().click();
-  test.equal(selected?.id, "junction-1", "selects the individual junction");
-  holder.select('[data-testid="sjpp-junction-delete"]').node().click();
-  await new Promise((resolve) => setTimeout(resolve, 0));
-  test.equal(holder.selectAll(".ts_pill").size(), 0, "removes the deleted junction pill");
-  test.ok(holder.text().includes("Junctions selected from genome browser"), "restores the empty state");
-  holder.remove();
-  test.end();
-});
-(0, import_tape.default)("event junctions render as one pill that selects and deletes the term collection", async (test) => {
-  const holder = select_default("body").append("div");
-  const handler = new SearchHandler();
-  let selected;
-  const dslabel = "junction-handler-event";
-  const customTerms = [makeJunctionCustomTerm([makeJunction("junction-1"), makeJunction("junction-2")], "Event A")];
-  await handler.init(
-    getOpts(holder, dslabel, customTerms, (term) => {
-      selected = term;
-    })
-  );
-  const pills = holder.selectAll(".ts_pill");
-  test.equal(pills.size(), 1, "renders one pill for the event and no member junction pills");
-  test.equal(pills.text(), "Event A", "uses the event label as the pill text");
-  test.ok(holder.text().includes("junction-1"), "lists the first junction ID");
-  test.ok(holder.text().includes("junction-2"), "lists the second junction ID");
-  pills.node().click();
-  test.equal(selected?.type, "termCollection", "selects a term collection");
-  test.equal(selected?.memberType, "numeric", "creates a numeric collection");
-  test.equal(selected?.name, "Event A", "uses the event label as the collection name");
-  test.deepEqual(selected?.termIds, ["junction-1", "junction-2"], "includes all event junction IDs");
-  test.ok(selected?.propsByTermId["junction-1"].color, "assigns the first junction a color");
-  test.ok(selected?.propsByTermId["junction-2"].color, "assigns the second junction a color");
-  test.notEqual(
-    selected?.propsByTermId["junction-1"].color,
-    selected?.propsByTermId["junction-2"].color,
-    "assigns distinct member colors"
-  );
-  holder.select('[data-testid="sjpp-junction-delete"]').node().click();
-  await new Promise((resolve) => setTimeout(resolve, 0));
-  test.equal(holder.selectAll(".ts_pill").size(), 0, "removes the complete event choice");
-  holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init() only shows state-backed junction custom terms", async (test) => {
-  const holder = select_default("body").append("div");
-  const handler = new SearchHandler();
-  const customTerms = [
-    makeJunctionCustomTerm([makeJunction("active-junction")]),
-    { id: "other-custom-term", name: "Other", tw: { term: { type: "float", id: "other", name: "Other" } } }
-  ];
-  await handler.init(getOpts(holder, "active", customTerms));
-  test.equal(holder.selectAll(".ts_pill").size(), 1, "renders only one matching junction term");
-  test.equal(holder.select(".ts_pill").text(), "Name active-junction", "renders the state-backed junction");
-  holder.remove();
-  test.end();
-});
-(0, import_tape.default)("event junction renders fraction choices when requested", async (test) => {
-  const holder = select_default("body").append("div");
-  const handler = new SearchHandler();
-  let selected;
-  const customTerms = [makeJunctionCustomTerm([makeJunction("junction-1"), makeJunction("junction-2")], "Event A")];
-  await handler.init(
-    getOpts(
-      holder,
-      "junction-handler-fraction",
-      customTerms,
-      (term) => {
-        selected = term;
-      },
-      "fraction"
-    )
-  );
-  holder.select(".ts_pill").node().click();
-  test.ok(holder.text().includes("Denominator"), "renders denominator choices for the event collection");
-  holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node().click();
-  test.equal(selected?.type, "TermCollectionTWFraction", "returns a fraction wrapper");
-  test.deepEqual(selected?.q.denominators, ["junction-1", "junction-2"], "defaults both junctions as denominators");
-  test.deepEqual(selected?.q.numerators, ["junction-1"], "defaults only the first junction as numerator");
-  test.equal(selected?.term.termlst.length, 2, "retains both junction members");
-  holder.remove();
-  test.end();
-});
-//# sourceMappingURL=junction.unit.spec-R4DIBFLB.js.map

package/dist/junction.unit.spec-R4DIBFLB.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../termdb/handlers/test/junction.unit.spec.ts"],
-  "sourcesContent": ["import tape from 'tape'\nimport * as d3s from 'd3-selection'\nimport type { JunctionTerm } from '#types'\nimport { SearchHandler } from '../junction.ts'\nimport { makeJunctionCustomTerm } from '../junction.customTerm.ts'\n\nfunction makeJunction(id: string): JunctionTerm {\n\treturn {\n\t\ttype: 'junction',\n\t\tid,\n\t\tname: `Name ${id}`,\n\t\tchr: 'chr1',\n\t\tstart: 100,\n\t\tstop: 200,\n\t\tstrand: '+',\n\t\tinfo: {}\n\t} as JunctionTerm\n}\n\nfunction getOpts(\n\tholder,\n\tdslabel: string,\n\tcustomTerms: any[] = [],\n\tcallback = (_term: any) => {},\n\ttermCollectionSelectionMode?: 'fraction'\n) {\n\tconst state = { customTerms }\n\treturn {\n\t\tholder,\n\t\tcallback,\n\t\ttermCollectionSelectionMode,\n\t\tgenomeObj: { name: 'hg38' },\n\t\tapp: {\n\t\t\tvocabApi: {\n\t\t\t\tvocab: { dslabel },\n\t\t\t\tstate,\n\t\t\t\tasync deleteCustomTermById(id: string) {\n\t\t\t\t\tconst index = state.customTerms.findIndex(term => term.id === id)\n\t\t\t\t\tif (index !== -1) state.customTerms.splice(index, 1)\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n}\n\ntape('\\n', test => {\n\ttest.comment('-***- termdb/handlers/junction -***-')\n\ttest.end()\n})\n\ntape('init() shows the empty-state message', async test => {\n\tconst holder = d3s.select('body').append('div')\n\tconst handler = new SearchHandler()\n\tawait handler.init(getOpts(holder, 'junction-handler-empty'))\n\n\ttest.ok(holder.text().includes('Junctions selected from genome browser'), 'shows the empty-state instructions')\n\n\tholder.remove()\n\ttest.end()\n})\n\ntape('ungrouped junctions render as selectable pills and can be deleted', async test => {\n\tconst holder = d3s.select('body').append('div')\n\tconst handler = new SearchHandler()\n\tlet selected: any\n\tconst dslabel = 'junction-handler-ungrouped'\n\tconst customTerms = [makeJunctionCustomTerm([makeJunction('junction-1')])]\n\tawait handler.init(\n\t\tgetOpts(holder, dslabel, customTerms, term => {\n\t\t\tselected = term\n\t\t})\n\t)\n\n\tconst pill = holder.select('.ts_pill')\n\ttest.equal(pill.text(), 'Name junction-1', 'renders the junction name in a pill')\n\t;(pill.node() as HTMLElement).click()\n\ttest.equal(selected?.id, 'junction-1', 'selects the individual junction')\n\t;(holder.select('[data-testid=\"sjpp-junction-delete\"]').node() as HTMLButtonElement).click()\n\tawait new Promise(resolve => setTimeout(resolve, 0))\n\ttest.equal(holder.selectAll('.ts_pill').size(), 0, 'removes the deleted junction pill')\n\ttest.ok(holder.text().includes('Junctions selected from genome browser'), 'restores the empty state')\n\n\tholder.remove()\n\ttest.end()\n})\n\ntape('event junctions render as one pill that selects and deletes the term collection', async test => {\n\tconst holder = d3s.select('body').append('div')\n\tconst handler = new SearchHandler()\n\tlet selected: any\n\tconst dslabel = 'junction-handler-event'\n\tconst customTerms = [makeJunctionCustomTerm([makeJunction('junction-1'), makeJunction('junction-2')], 'Event A')]\n\tawait handler.init(\n\t\tgetOpts(holder, dslabel, customTerms, term => {\n\t\t\tselected = term\n\t\t})\n\t)\n\n\tconst pills = holder.selectAll('.ts_pill')\n\ttest.equal(pills.size(), 1, 'renders one pill for the event and no member junction pills')\n\ttest.equal(pills.text(), 'Event A', 'uses the event label as the pill text')\n\ttest.ok(holder.text().includes('junction-1'), 'lists the first junction ID')\n\ttest.ok(holder.text().includes('junction-2'), 'lists the second junction ID')\n\t;(pills.node() as HTMLElement).click()\n\ttest.equal(selected?.type, 'termCollection', 'selects a term collection')\n\ttest.equal(selected?.memberType, 'numeric', 'creates a numeric collection')\n\ttest.equal(selected?.name, 'Event A', 'uses the event label as the collection name')\n\ttest.deepEqual(selected?.termIds, ['junction-1', 'junction-2'], 'includes all event junction IDs')\n\ttest.ok(selected?.propsByTermId['junction-1'].color, 'assigns the first junction a color')\n\ttest.ok(selected?.propsByTermId['junction-2'].color, 'assigns the second junction a color')\n\ttest.notEqual(\n\t\tselected?.propsByTermId['junction-1'].color,\n\t\tselected?.propsByTermId['junction-2'].color,\n\t\t'assigns distinct member colors'\n\t)\n\t;(holder.select('[data-testid=\"sjpp-junction-delete\"]').node() as HTMLButtonElement).click()\n\tawait new Promise(resolve => setTimeout(resolve, 0))\n\ttest.equal(holder.selectAll('.ts_pill').size(), 0, 'removes the complete event choice')\n\n\tholder.remove()\n\ttest.end()\n})\n\ntape('init() only shows state-backed junction custom terms', async test => {\n\tconst holder = d3s.select('body').append('div')\n\tconst handler = new SearchHandler()\n\tconst customTerms = [\n\t\tmakeJunctionCustomTerm([makeJunction('active-junction')]),\n\t\t{ id: 'other-custom-term', name: 'Other', tw: { term: { type: 'float', id: 'other', name: 'Other' } } }\n\t]\n\n\tawait handler.init(getOpts(holder, 'active', customTerms))\n\n\ttest.equal(holder.selectAll('.ts_pill').size(), 1, 'renders only one matching junction term')\n\ttest.equal(holder.select('.ts_pill').text(), 'Name active-junction', 'renders the state-backed junction')\n\n\tholder.remove()\n\ttest.end()\n})\n\ntape('event junction renders fraction choices when requested', async test => {\n\tconst holder = d3s.select('body').append('div')\n\tconst handler = new SearchHandler()\n\tlet selected: any\n\tconst customTerms = [makeJunctionCustomTerm([makeJunction('junction-1'), makeJunction('junction-2')], 'Event A')]\n\tawait handler.init(\n\t\tgetOpts(\n\t\t\tholder,\n\t\t\t'junction-handler-fraction',\n\t\t\tcustomTerms,\n\t\t\tterm => {\n\t\t\t\tselected = term\n\t\t\t},\n\t\t\t'fraction'\n\t\t)\n\t)\n\t;(holder.select('.ts_pill').node() as HTMLElement).click()\n\ttest.ok(holder.text().includes('Denominator'), 'renders denominator choices for the event collection')\n\t;(holder.select('[data-testid=\"sjpp-term-collection-fraction-select\"]').node() as HTMLButtonElement).click()\n\ttest.equal(selected?.type, 'TermCollectionTWFraction', 'returns a fraction wrapper')\n\ttest.deepEqual(selected?.q.denominators, ['junction-1', 'junction-2'], 'defaults both junctions as denominators')\n\ttest.deepEqual(selected?.q.numerators, ['junction-1'], 'defaults only the first junction as numerator')\n\ttest.equal(selected?.term.termlst.length, 2, 'retains both junction members')\n\n\tholder.remove()\n\ttest.end()\n})\n"],
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