@sjcrh/proteinpaint-client 2.226.0 → 2.227.1

package/dist/chunk-NGBI4FST.js

@@ -1,195 +0,0 @@
-import {
-  sample_match_termvaluesetting
-} from "./chunk-DOC3HBOV.js";
-import {
-  isDictionaryType
-} from "./chunk-T2W4JHWJ.js";
-import {
-  __export
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/matrix.data.js
-var matrix_data_exports = {};
-__export(matrix_data_exports, {
-  applyLegendValueFilter: () => applyLegendValueFilter,
-  getMatrixRequestOpts: () => getMatrixRequestOpts,
-  mayRequireToken: () => mayRequireToken,
-  setData: () => setData
-});
-function mayRequireToken(tokenMessage = "") {
-  const message = tokenMessage || this.state.tokenVerificationMessage;
-  if (!message && this.state.hasVerifiedToken) {
-    this.dom.errdiv.style("display", "none").html();
-    this.dom.controls.style("display", this.opts.controls ? "inline-block" : "");
-    this.dom.svg.style("display", "");
-    return false;
-  } else {
-    this.dom.errdiv.style("display", "").html(message || "Requires login");
-    this.dom.controls.style("display", "none");
-    this.dom.svg.style("display", "none");
-    return true;
-  }
-}
-function getMatrixRequestOpts(state, config) {
-  const terms = [];
-  const termgroups = this.chartType == "hierCluster" ? config.termgroups.filter((grp) => grp.type != "hierCluster") : config.termgroups;
-  for (const grp of termgroups) {
-    terms.push(...getNormalizedTwLstCopy(grp.lst));
-  }
-  if (config.divideBy) terms.push(normalizeTwForRequest(structuredClone(config.divideBy)));
-  const opts = {
-    terms,
-    filter: state.filter,
-    filter0: state.filter0,
-    maxGenes: state.config.settings.matrix.maxGenes,
-    /*********** quick fix
-    when the flag is true, set artificially large number to ensure all genes are sent in one query
-    this avoids changing getAnnotatedSampleData()
-    additional non-matrix app that calls getAnnotatedSampleData will NEED THE SAME FIX
-    */
-    termsPerRequest: this.app.vocabApi.termdbConfig.queries?.snvindel?.byisoform?.processTwsInOneQuery ? 1e3 : 1
-  };
-  if (this.chartType != "hierCluster" && config.settings.matrix.mapChildren2Root) opts.mapChildren2Root = true;
-  if (this.chartType == "hierCluster") {
-    opts.isHierCluster = 1;
-  }
-  return opts;
-}
-function getNormalizedTwLstCopy(twlst) {
-  const lst = [];
-  for (const tw of twlst) {
-    if (tw.type && tw.constructor.name != "Object") lst.push(tw);
-    else lst.push(normalizeTwForRequest(tw));
-  }
-  lst.forEach(normalizeTwForRequest);
-  lst.sort(sortTwLst);
-  return lst;
-}
-function normalizeTwForRequest(_tw) {
-  const tw = structuredClone(_tw);
-  if (!tw?.term) return;
-  delete tw.term.category2samplecount;
-  if (isDictionaryType(tw.term.type) && tw.term.type !== "samplelst") delete tw.term.values;
-  return tw;
-}
-function sortTwLst(twa, twb) {
-  const a = twa?.$id || twa.term?.id || twa?.term?.name;
-  const b = twb?.$id || twb.term?.id || twb?.term?.name;
-  return a < b ? -1 : 1;
-}
-async function setData(_data) {
-  const opts = this.currRequestOpts?.matrix || this.getMatrixRequestOpts(this.state, this.config);
-  this.numTerms = opts.terms.length;
-  opts.loadingDiv = this.chartType != "hierCluster" && this.dom.loadingDiv;
-  opts.signal = this.api.getAbortSignal();
-  const data = await this.app.vocabApi.getAnnotatedSampleData(opts, _data);
-  this.data = data;
-  this.origData = structuredClone(this.data);
-  this.sampleIdMap = {};
-  for (const d of this.data.lst) {
-    this.sampleIdMap[d.sample] = d._ref_.label;
-  }
-}
-function applyLegendValueFilter() {
-  const self = this;
-  if (!self.config.legendValueFilter.lst.length && !self.config.legendGrpFilter.lst.length) return;
-  for (const grpFilter of self.config.legendGrpFilter.lst) {
-    if (grpFilter.dt) {
-      const filteredOutCats = /* @__PURE__ */ new Set();
-      for (const oneSampleData of self.origData.lst) {
-        for (const annoForOneTerm of Object.values(oneSampleData)) {
-          if (annoForOneTerm.values) {
-            const newValues = [];
-            for (const v of annoForOneTerm.values) {
-              if (!(grpFilter.dt.includes(v.dt) && (!grpFilter.origin || v.origin == grpFilter.origin))) {
-                newValues.push(v);
-              } else {
-                filteredOutCats.add(v.class);
-              }
-            }
-            annoForOneTerm.values = newValues;
-          }
-        }
-      }
-      grpFilter.filteredOutCats = [...filteredOutCats];
-      for (const oneSampleData of Object.values(self.origData.samples)) {
-        for (const annoForOneTerm of Object.values(oneSampleData)) {
-          if (annoForOneTerm.values)
-            annoForOneTerm.values = annoForOneTerm.values.filter(
-              (v) => !(grpFilter.dt.includes(v.dt) && (!grpFilter.origin || v.origin == grpFilter.origin))
-            );
-        }
-      }
-    }
-  }
-  const geneVariant$ids = Object.values(self.data.refs.byTermId).filter((v) => v.term?.type == "geneVariant").map((v) => v.$id);
-  const data = { samples: {}, lst: [], refs: self.data.refs };
-  const onlyHardFilter = structuredClone(self.config.legendValueFilter);
-  onlyHardFilter.lst = onlyHardFilter.lst.filter(
-    (l) => !l.tvs.legendFilterType || l.tvs.legendFilterType !== "geneVariant_soft"
-  );
-  for (const row of self.origData.lst) {
-    const include = sample_match_termvaluesetting(row, onlyHardFilter, geneVariant$ids);
-    if (include || self.chartType == "hierCluster") {
-      data.samples[row.sample] = row;
-      data.lst.push(row);
-    }
-  }
-  for (const valFilter of self.config.legendValueFilter.lst) {
-    if (valFilter.tvs.legendFilterType !== "geneVariant_soft") continue;
-    const tvsV = valFilter.tvs.values[0];
-    const filteredOutCats = /* @__PURE__ */ new Set();
-    for (const oneSampleData of data.lst) {
-      for (const annoForOneTerm of Object.values(oneSampleData)) {
-        if (annoForOneTerm.values) {
-          const newValues = [];
-          for (const v of annoForOneTerm.values) {
-            if (!(v.dt == tvsV.dt && (!tvsV.origin || v.origin == tvsV.origin) && tvsV.mclasslst.includes(v.class))) {
-              newValues.push(v);
-            } else {
-              filteredOutCats.add(v.class);
-            }
-          }
-          annoForOneTerm.values = newValues;
-        }
-      }
-    }
-    valFilter.filteredOutCats = [...filteredOutCats];
-    for (const oneSampleData of Object.values(data.samples)) {
-      for (const annoForOneTerm of Object.values(oneSampleData)) {
-        if (annoForOneTerm.values)
-          annoForOneTerm.values = annoForOneTerm.values.filter(
-            (v) => !(v.dt == tvsV.dt && (!tvsV.origin || v.origin == tvsV.origin) && tvsV.mclasslst.includes(v.class))
-          );
-      }
-    }
-  }
-  if (self.chartType !== "hierCluster" && geneVariant$ids.length && self.app.vocabApi.termdbConfig?.matrix?.removeEmptySamples)
-    remove_empty_sample(data, geneVariant$ids);
-  self.data = data;
-}
-function remove_empty_sample(data) {
-  for (const oneSampleData of data.lst) {
-    let removeSample = true;
-    for (const [key, annoForOneTerm] of Object.entries(oneSampleData)) {
-      if (!annoForOneTerm.values) continue;
-      const annoType = data.refs.byTermId[key].term.type;
-      if (annoType != "geneVariant") continue;
-      if (annoForOneTerm.values.length) removeSample = false;
-    }
-    if (removeSample) {
-      data.lst = data.lst.filter((dl) => dl.sample !== oneSampleData.sample);
-      delete data.samples[parseInt(oneSampleData.sample)];
-    }
-  }
-  return data;
-}
-
-export {
-  mayRequireToken,
-  getMatrixRequestOpts,
-  setData,
-  applyLegendValueFilter,
-  matrix_data_exports
-};
-//# sourceMappingURL=chunk-NGBI4FST.js.map

package/dist/chunk-OKM4ACTA.js

@@ -1,170 +0,0 @@
-import {
-  getEmptyCell,
-  maySetEmptyCell,
-  setCellProps
-} from "./chunk-FV2GLMSI.js";
-import {
-  TermTypeGroups
-} from "./chunk-2N345NXD.js";
-import {
-  __export
-} from "./chunk-HS5PO5ZQ.js";
-
-// plots/matrix/matrix.serieses.js
-var matrix_serieses_exports = {};
-__export(matrix_serieses_exports, {
-  getSerieses: () => getSerieses
-});
-function getSerieses(data) {
-  const s = this.settings.matrix;
-  const serieses = [];
-  const { colw, dx, dy, xMin, xMax } = this.dimensions;
-  const dvt = this.config.divideBy || {};
-  const divideByTermId = "id" in dvt ? dvt.id : dvt.name;
-  const legendGroups = {};
-  this.colorScaleByTermId = {};
-  for (const t of this.termOrder) {
-    const $id = t.tw.$id;
-    const termid = "id" in t.tw.term ? t.tw.term.id : t.tw.term.name;
-    const isDivideByTerm = termid === divideByTermId;
-    const emptyGridCells = [];
-    const cellht = t.grp.type == "hierCluster" ? s.clusterRowh : dy;
-    const htAdjust = t.grp.type == "hierCluster" ? 0 : t.totalHtAdjustments;
-    const y = s.transpose ? 0 : t.totalIndex * cellht + t.visibleGrpIndex * s.rowgspace + htAdjust;
-    const twSpecificSettings = this.config.settings.matrix.twSpecificSettings;
-    const hoverY0 = (twSpecificSettings[$id]?.contBarGap || 0) + y;
-    const series = {
-      t,
-      tw: t.tw,
-      cells: [],
-      y,
-      hoverY0,
-      hoverY1: hoverY0 + (twSpecificSettings[$id]?.contBarH || cellht)
-    };
-    for (const so of this.unfilteredSampleOrder) {
-      const { totalIndex, grpIndex, row } = so;
-      series.x = !s.transpose ? 0 : t.totalIndex * dx + t.visibleGrpIndex * s.colgspace;
-      const anno = row[$id];
-      const cellTemplate = {
-        s: so,
-        sample: row.sample,
-        tw: t.tw,
-        term: t.tw.term,
-        termid,
-        $id,
-        totalIndex,
-        grpIndex,
-        row,
-        t,
-        seriesY: y
-      };
-      if (!anno) {
-        if (!so.grp.isExcluded && (s.useCanvas || so.grp)) {
-          const cell = getEmptyCell(cellTemplate, s, this.dimensions);
-          series.cells.push(cell);
-        }
-        continue;
-      }
-      const key = anno.key;
-      const values = anno.filteredValues || anno.values || [anno.value];
-      const numRects = s.cellEncoding == "oncoprint" ? 1 : values.length;
-      const height = !s.transpose ? s.rowh / numRects : colw;
-      const width = !s.transpose ? colw : colw / values.length;
-      const siblingCells = [];
-      if (!anno || !anno.renderedValues?.length) {
-        if (!so.grp.isExcluded && (s.useCanvas || so.grp)) {
-          const cell = getEmptyCell(cellTemplate, s, this.dimensions);
-          series.cells.push(cell);
-        }
-        continue;
-      }
-      for (const [i, value] of values.entries()) {
-        const cell = Object.assign({ key, siblingCells }, cellTemplate);
-        cell.valueIndex = i;
-        let legend;
-        if (typeof t.tw.setCellProps == "function") {
-          legend = t.tw.setCellProps(cell, anno, value, s, t, this, width, height, dx, dy, i);
-        } else {
-          const cellProps = t.grp.type == "hierCluster" ? setCellProps["hierCluster"] : t.tw.term.type == "samplelst" ? setCellProps["categorical"] : setCellProps[t.tw.term.type];
-          legend = cellProps(cell, t.tw, anno, value, s, t, this, width, height, dx, dy, i);
-        }
-        if (!s.useCanvas && (cell.x + cell.width < xMin || cell.x - cell.width > xMax)) continue;
-        if (legend) {
-          for (const l of [legendGroups, so.grp.legendGroups]) {
-            if (!l) continue;
-            if (!l[legend.group]) {
-              l[legend.group] = {
-                ref: legend.ref,
-                values: {},
-                order: legend.order,
-                $id,
-                origin: legend.entry.origin
-              };
-              if (legend.entry.dt) l[legend.group].dt = [legend.entry.dt];
-            }
-            const lg = l[legend.group];
-            if (lg.dt && !lg.dt.includes(legend.entry.dt)) lg.dt.push(legend.entry.dt);
-            const legendK = legend.entry.origin ? legend.entry.origin + legend.value : legend.value;
-            if (!lg.values[legendK]) {
-              lg.values[legendK] = JSON.parse(JSON.stringify(legend.entry));
-              if (legend.entry.scale) lg.values[legendK].scale = legend.entry.scale;
-            }
-            if (!lg.values[legendK].samples) lg.values[legendK].samples = /* @__PURE__ */ new Set();
-            if (t.tw.term.name === TermTypeGroups.MUTATION_SIGNATURE) {
-              if (value?.value > 0) lg.values[legendK].samples.add(row.sample);
-            } else lg.values[legendK].samples.add(row.sample);
-            if (isDivideByTerm) {
-              lg.values[legend.value].isExcluded = so.grp.isExcluded;
-            }
-          }
-        }
-        if (!so.grp.isExcluded) {
-          if (anno.renderedValues.includes(value)) series.cells.push(cell);
-          siblingCells.push(cell);
-        }
-      }
-      if (s.showGrid == "rect" && !so.grp.isExcluded) {
-        const cell = t.grp.type == "hierCluster" ? getEmptyCell(cellTemplate, s, this.dimensions) : maySetEmptyCell[t.tw.term.type]?.(siblingCells, cellTemplate, s, this.dimensions, this);
-        if (cell) emptyGridCells.push(cell);
-      }
-    }
-    if (emptyGridCells.length) series.cells.unshift(...emptyGridCells);
-    if (series.cells.length) serieses.push(series);
-  }
-  addAllHiddenLegendGroups(legendGroups, this);
-  this.legendData = this.getLegendData(legendGroups, data.refs, this);
-  for (const grp of this.sampleGroups) {
-    grp.legendData = this.getLegendData(grp.legendGroups, data.refs, this);
-  }
-  return serieses;
-}
-function addAllHiddenLegendGroups(legendGroups, self) {
-  for (const valueFilter of self.config.legendValueFilter.lst) {
-    if (valueFilter.tvs.term.type == "categorical" && !legendGroups[valueFilter.tvs.term.$id]) {
-      legendGroups[valueFilter.tvs.term.$id] = {
-        ref: {},
-        values: {},
-        $id: valueFilter.tvs.term.$id
-      };
-    } else if (valueFilter.tvs.term.type == "geneVariant" && !legendGroups[valueFilter.legendGrpName]) {
-      legendGroups[valueFilter.legendGrpName] = {
-        ref: {},
-        values: {},
-        dt: [valueFilter.tvs.values[0].dt],
-        origin: valueFilter.tvs.values[0].origin
-      };
-    } else if ((valueFilter.tvs.term.type == "integer" || valueFilter.tvs.term.type == "float") && !legendGroups[valueFilter.tvs.term.$id]) {
-      legendGroups[valueFilter.tvs.term.$id] = {
-        ref: {},
-        values: {},
-        $id: valueFilter.tvs.term.$id
-      };
-    }
-  }
-}
-
-export {
-  getSerieses,
-  matrix_serieses_exports
-};
-//# sourceMappingURL=chunk-OKM4ACTA.js.map

package/dist/chunk-OUDHHMZU.js

@@ -1,159 +0,0 @@
-import {
-  NumericDensity
-} from "./chunk-LYDN734A.js";
-import {
-  HandlerBase,
-  Tabs
-} from "./chunk-DPWSIN62.js";
-
-// termsetting/handlers/NumericHandler.ts
-var NumericHandler = class extends HandlerBase {
-  constructor(opts) {
-    super(opts);
-    this.tabs = [];
-    this.handlerByMode = {};
-    this.dom = {};
-    this.opts = opts;
-    this.termsetting = opts.termsetting;
-    this.tw = opts.termsetting.tw;
-    this.tabs = this.setTabData();
-    this.density = new NumericDensity(opts);
-  }
-  getPillStatus() {
-    this.tw = this.termsetting.tw;
-    const status = this.tw.getStatus(this.termsetting.usecase, this.termsetting.data);
-    if (this.tw.term.type == "geneExpression" && this.tw.term.sampleTypeLabel)
-      status.text += ` (${this.tw.term.sampleTypeLabel})`;
-    return status;
-  }
-  setTabData() {
-    const self = this.termsetting;
-    const tabs = [];
-    const callback = async (event, tabData) => {
-      if (event) event.stopPropagation();
-      try {
-        await this.setEditHandler(tabData);
-        await this.editHandler.showEditMenu(tabData.contentHolder);
-      } catch (e) {
-        this.dom.errdiv.style("display", "").text(e);
-      }
-    };
-    const numTabs = self.opts.numericEditMenuVersion.length;
-    if (self.opts.numericEditMenuVersion.includes("continuous")) {
-      tabs.push({
-        mode: "continuous",
-        label: self.term.type == "survival" ? "Time to Event" : "Continuous",
-        callback,
-        active: this.tw.q.mode === "continuous" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("discrete")) {
-      tabs.push({
-        mode: "discrete",
-        label: self.term.type == "survival" ? "Exit code" : "Discrete",
-        callback,
-        active: this.tw.q.mode === "discrete" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("spline")) {
-      tabs.push({
-        mode: "spline",
-        label: "Cubic spline",
-        callback,
-        active: this.tw.q.mode === "spline" || numTabs === 1
-      });
-    }
-    if (self.opts.numericEditMenuVersion.includes("binary")) {
-      tabs.push({
-        mode: "binary",
-        label: "Binary",
-        callback,
-        active: this.tw.q.mode === "binary" || numTabs === 1
-      });
-    }
-    return tabs;
-  }
-  async setEditHandler(tabData) {
-    if (!this.handlerByMode[tabData.mode]) {
-      switch (tabData.mode) {
-        case "continuous": {
-          const { NumContEditor } = await import("./NumContEditor-YLBJW64K.js");
-          this.handlerByMode.continuous = new NumContEditor(this.opts, this);
-          break;
-        }
-        case "discrete": {
-          const { NumDiscreteEditor } = await import("./NumDiscreteEditor-FJIBZTBP.js");
-          this.handlerByMode.discrete = new NumDiscreteEditor(this.opts, this);
-          break;
-        }
-        case "binary": {
-          const { NumBinaryEditor } = await import("./NumBinaryEditor-FNVYUK2J.js");
-          this.handlerByMode.binary = new NumBinaryEditor(this.opts, this);
-          break;
-        }
-        case "spline": {
-          const { NumSplineEditor } = await import("./NumSplineEditor-TVMVAN7I.js");
-          this.handlerByMode.spline = new NumSplineEditor(this.opts, this);
-          break;
-        }
-        default:
-          throw `unexpected numeric tabData.mode='${tabData.mode}'`;
-          break;
-      }
-    }
-    this.editHandler = this.handlerByMode[tabData.mode];
-  }
-  async showEditMenu(div) {
-    try {
-      this.showLoading(div);
-      this.dom.errdiv = div.append("div").attr("class", "sja_errorbar").style("display", "none");
-      this.tw = this.termsetting.tw;
-      const self = this.tw;
-      for (const t of this.tabs) {
-        t.active = this.tabs.length === 1 || self.q.mode == t.mode || t.mode == "continuous" && !self.q.mode;
-      }
-      this.density_data = await this.density.setData();
-      await this.setEditHandler(this.tabs.find((t) => t.active));
-      this.dom.editDiv = div.append("div").attr("data-testid", "sjpp-num-ts-edit-div");
-      this.dom.btnDiv = div.append("div").style("margin", "0px 0px 5px 5px");
-      this.renderButtons(this.dom.btnDiv);
-      if (this.tabs.length > 1) {
-        this.dom.topBar = this.dom.editDiv.append("div").attr("data-testid", "sja-ts-numeric-edit-top-bar").style("padding", "10px");
-        this.dom.topBar.append("span").html("Use as ");
-        new Tabs({
-          holder: this.dom.topBar.append("div").style("display", "inline-block"),
-          contentHolder: this.dom.editDiv.append("div"),
-          noTopContentStyle: true,
-          tabs: this.tabs
-        }).main();
-      } else {
-        await this.editHandler.showEditMenu(this.dom.editDiv);
-      }
-      this.dom.loadingDiv.style("display", "none");
-    } catch (e) {
-      this.hideLoading();
-      this.dom.errdiv.style("display", "").text(typeof e == "object" ? e.message || e.error || e : e);
-    }
-  }
-  renderButtons(btnDiv) {
-    btnDiv.append("button").style("margin", "5px").attr("data-testId", "sjpp_numeric_edit_apply").html("Apply").on("click", () => {
-      this.termsetting.q = this.editHandler.getEditedQ();
-      this.termsetting.dom.tip.hide();
-      this.termsetting.api.runCallback();
-    });
-    btnDiv.append("button").style("margin", "5px").attr("data-testId", "sjpp_numeric_edit_reset").html("Reset").on("click", () => {
-      this.editHandler.undoEdits();
-    });
-  }
-  destroy() {
-    for (const s of Object.values(this.dom)) {
-      if (typeof s.remove == "function") s.remove();
-    }
-    this.density.destroy();
-  }
-};
-
-export {
-  NumericHandler
-};
-//# sourceMappingURL=chunk-OUDHHMZU.js.map

package/dist/chunk-OUDHHMZU.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../termsetting/handlers/NumericHandler.ts"],
-  "sourcesContent": ["import { HandlerBase } from '../HandlerBase.ts'\nimport type { Handler } from '../index.ts'\nimport type { NumRegularBin, NumCustomBins, NumCont, NumSpline } from '#tw'\nimport { Tabs } from '#dom'\nimport { NumericDensity } from './NumericDensity.ts'\nimport type { NumContEditor } from './NumContEditor'\nimport type { NumDiscreteEditor } from './NumDiscreteEditor'\nimport type { NumBinaryEditor } from './NumBinaryEditor'\nimport type { NumSplineEditor } from './NumSplineEditor'\n\ntype NumericTabCallback = (event: PointerEvent, tab: TabData) => void\n\ntype TabData = {\n\tmode: 'continuous' | 'discrete' | 'binary' | 'spline'\n\tlabel: string\n\tcallback: NumericTabCallback\n\tcontentHolder?: any //\n\tactive?: boolean\n}\n\n/*\n\tNumericHandler \n\t- NumericDensity\n\t- NumericDiscrete\n\t\t - NumRegularBinEditor\n\t\t - NumCustomBinEditor\n*/\n\ntype EditHandler = NumContEditor | NumDiscreteEditor | NumBinaryEditor | NumSplineEditor\n\nexport class NumericHandler extends HandlerBase implements Handler {\n\topts: any // TODO\n\ttw: NumRegularBin | NumCustomBins | NumCont | NumSpline\n\ttabs: TabData[] = []\n\thandlerByMode: {\n\t\t[twType: string]: EditHandler\n\t} = {}\n\teditHandler!: EditHandler\n\ttoggleBtns!: Tabs\n\n\tdom: {\n\t\t[name: string]: any\n\t} = {}\n\n\tdensity: NumericDensity\n\tdensity_data!: any\n\n\tconstructor(opts) {\n\t\tsuper(opts)\n\t\tthis.opts = opts\n\t\tthis.termsetting = opts.termsetting\n\t\tthis.tw = opts.termsetting.tw\n\t\tthis.tabs = this.setTabData()\n\t\tthis.density = new NumericDensity(opts)\n\t}\n\n\tgetPillStatus() {\n\t\tthis.tw = this.termsetting.tw as NumRegularBin | NumCustomBins | NumCont | NumSpline // TODO: do not force type\n\t\tconst status = this.tw.getStatus(this.termsetting.usecase, this.termsetting.data)\n\t\tif (this.tw.term.type == 'geneExpression' && this.tw.term.sampleTypeLabel)\n\t\t\tstatus.text += ` (${this.tw.term.sampleTypeLabel})`\n\t\treturn status\n\t}\n\n\tsetTabData() {\n\t\tconst self = this.termsetting\n\t\tconst tabs: TabData[] = []\n\t\tconst callback = async (event, tabData) => {\n\t\t\tif (event) event.stopPropagation()\n\t\t\ttry {\n\t\t\t\tawait this.setEditHandler(tabData)\n\t\t\t\t//this.dom.editDiv.selectAll('*').remove()\n\t\t\t\tawait this.editHandler.showEditMenu(tabData.contentHolder) //this.dom.editDiv)\n\t\t\t} catch (e) {\n\t\t\t\tthis.dom.errdiv.style('display', '').text(e)\n\t\t\t}\n\t\t}\n\n\t\tconst numTabs = self.opts.numericEditMenuVersion.length\n\t\tif (self.opts.numericEditMenuVersion.includes('continuous')) {\n\t\t\ttabs.push({\n\t\t\t\tmode: 'continuous',\n\t\t\t\tlabel: self.term.type == 'survival' ? 'Time to Event' : 'Continuous',\n\t\t\t\tcallback,\n\t\t\t\tactive: this.tw.q.mode === 'continuous' || numTabs === 1\n\t\t\t})\n\t\t}\n\n\t\tif (self.opts.numericEditMenuVersion.includes('discrete')) {\n\t\t\ttabs.push({\n\t\t\t\tmode: 'discrete',\n\t\t\t\tlabel: self.term.type == 'survival' ? 'Exit code' : 'Discrete',\n\t\t\t\tcallback,\n\t\t\t\tactive: this.tw.q.mode === 'discrete' || numTabs === 1\n\t\t\t})\n\t\t}\n\n\t\tif (self.opts.numericEditMenuVersion.includes('spline')) {\n\t\t\ttabs.push({\n\t\t\t\tmode: 'spline',\n\t\t\t\tlabel: 'Cubic spline',\n\t\t\t\tcallback,\n\t\t\t\tactive: this.tw.q.mode === 'spline' || numTabs === 1\n\t\t\t})\n\t\t}\n\n\t\tif (self.opts.numericEditMenuVersion.includes('binary')) {\n\t\t\ttabs.push({\n\t\t\t\tmode: 'binary',\n\t\t\t\tlabel: 'Binary',\n\t\t\t\tcallback,\n\t\t\t\tactive: this.tw.q.mode === 'binary' || numTabs === 1\n\t\t\t})\n\t\t}\n\n\t\treturn tabs\n\t}\n\n\tasync setEditHandler(tabData) {\n\t\tif (!this.handlerByMode[tabData.mode]) {\n\t\t\tswitch (tabData.mode) {\n\t\t\t\tcase 'continuous': {\n\t\t\t\t\tconst { NumContEditor } = await import('./NumContEditor.ts')\n\t\t\t\t\tthis.handlerByMode.continuous = new NumContEditor(this.opts, this)\n\t\t\t\t\tbreak\n\t\t\t\t}\n\t\t\t\tcase 'discrete': {\n\t\t\t\t\tconst { NumDiscreteEditor } = await import('./NumDiscreteEditor.ts')\n\t\t\t\t\tthis.handlerByMode.discrete = new NumDiscreteEditor(this.opts, this)\n\t\t\t\t\tbreak\n\t\t\t\t}\n\t\t\t\tcase 'binary': {\n\t\t\t\t\tconst { NumBinaryEditor } = await import('./NumBinaryEditor.ts')\n\t\t\t\t\tthis.handlerByMode.binary = new NumBinaryEditor(this.opts, this)\n\t\t\t\t\tbreak\n\t\t\t\t}\n\t\t\t\tcase 'spline': {\n\t\t\t\t\tconst { NumSplineEditor } = await import('./NumSplineEditor.ts')\n\t\t\t\t\tthis.handlerByMode.spline = new NumSplineEditor(this.opts, this)\n\t\t\t\t\tbreak\n\t\t\t\t}\n\t\t\t\tdefault:\n\t\t\t\t\tthrow `unexpected numeric tabData.mode='${tabData.mode}'`\n\t\t\t\t\tbreak\n\t\t\t}\n\t\t}\n\t\tthis.editHandler = this.handlerByMode[tabData.mode]\n\t}\n\n\tasync showEditMenu(div) {\n\t\ttry {\n\t\t\tthis.showLoading(div)\n\t\t\tthis.dom.errdiv = div.append('div').attr('class', 'sja_errorbar').style('display', 'none')\n\t\t\tthis.tw = this.termsetting.tw as NumRegularBin | NumCustomBins | NumCont | NumSpline // TODO: do not force type\n\n\t\t\tconst self = this.tw\n\t\t\tfor (const t of this.tabs) {\n\t\t\t\tt.active = this.tabs.length === 1 || self.q.mode == t.mode || (t.mode == 'continuous' && !self.q.mode)\n\t\t\t}\n\n\t\t\tthis.density_data = await this.density.setData()\n\t\t\tawait this.setEditHandler(this.tabs.find(t => t.active))\n\t\t\tthis.dom.editDiv = div.append('div').attr('data-testid', 'sjpp-num-ts-edit-div')\n\t\t\tthis.dom.btnDiv = div.append('div').style('margin', '0px 0px 5px 5px')\n\t\t\tthis.renderButtons(this.dom.btnDiv)\n\n\t\t\tif (this.tabs.length > 1) {\n\t\t\t\tthis.dom.topBar = this.dom.editDiv\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.attr('data-testid', 'sja-ts-numeric-edit-top-bar')\n\t\t\t\t\t.style('padding', '10px')\n\t\t\t\tthis.dom.topBar.append('span').html('Use as ')\n\t\t\t\tnew Tabs({\n\t\t\t\t\tholder: this.dom.topBar.append('div').style('display', 'inline-block'),\n\t\t\t\t\tcontentHolder: this.dom.editDiv.append('div'),\n\t\t\t\t\tnoTopContentStyle: true,\n\t\t\t\t\ttabs: this.tabs\n\t\t\t\t}).main()\n\t\t\t} else {\n\t\t\t\tawait this.editHandler.showEditMenu(this.dom.editDiv)\n\t\t\t}\n\n\t\t\tthis.dom.loadingDiv.style('display', 'none')\n\t\t} catch (e: any) {\n\t\t\tthis.hideLoading()\n\t\t\tthis.dom.errdiv.style('display', '').text(typeof e == 'object' ? e.message || e.error || e : e)\n\t\t}\n\t}\n\n\trenderButtons(btnDiv) {\n\t\tbtnDiv\n\t\t\t.append('button')\n\t\t\t.style('margin', '5px')\n\t\t\t.attr('data-testId', 'sjpp_numeric_edit_apply')\n\t\t\t.html('Apply')\n\t\t\t.on('click', () => {\n\t\t\t\tthis.termsetting.q = this.editHandler.getEditedQ()\n\t\t\t\tthis.termsetting.dom.tip.hide()\n\t\t\t\tthis.termsetting.api.runCallback()\n\t\t\t})\n\n\t\tbtnDiv\n\t\t\t.append('button')\n\t\t\t.style('margin', '5px')\n\t\t\t.attr('data-testId', 'sjpp_numeric_edit_reset')\n\t\t\t.html('Reset')\n\t\t\t.on('click', () => {\n\t\t\t\tthis.editHandler.undoEdits()\n\t\t\t})\n\t}\n\n\tdestroy() {\n\t\tfor (const s of Object.values(this.dom)) {\n\t\t\tif (typeof s.remove == 'function') s.remove()\n\t\t}\n\t\tthis.density.destroy()\n\t}\n}\n"],
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