@sjcrh/proteinpaint-client 2.204.0 → 2.206.0

package/dist/block.tk.pgv-JOIQVWL2.js

@@ -0,0 +1,938 @@
+import {
+  bigwigconfigpanel,
+  bigwigfromtemplate
+} from "./chunk-Z4SM3FBK.js";
+import {
+  legend_newrow
+} from "./chunk-SDVE5ECI.js";
+import "./chunk-V2OJLJSK.js";
+import "./chunk-X63NSV33.js";
+import {
+  axisstyle,
+  bwSetting,
+  category2legend,
+  font,
+  make_table_2col,
+  tkt
+} from "./chunk-Q5SK3U2T.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-KV4W2ACA.js";
+import "./chunk-54KC7DAB.js";
+import "./chunk-N7DVQTPC.js";
+import {
+  Menu
+} from "./chunk-ELJX3QIQ.js";
+import "./chunk-EEB5VE2A.js";
+import "./chunk-6RRZRISL.js";
+import "./chunk-2KM4PRQM.js";
+import {
+  dofetch3
+} from "./chunk-RPDVFM7E.js";
+import "./chunk-M4XXKTH2.js";
+import "./chunk-5ILEFNXJ.js";
+import "./chunk-IZUYLFOX.js";
+import "./chunk-WINIL2KN.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-7X6NF7NI.js";
+import "./chunk-W5J3LTYS.js";
+import {
+  axisLeft,
+  axisTop,
+  category10_default
+} from "./chunk-Z2ZITHT4.js";
+import {
+  format,
+  linear,
+  ordinal
+} from "./chunk-4OLM3KSB.js";
+import "./chunk-FXQXCOII.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// src/block.tk.pgv.js
+var genevaluexspace = 13;
+var defaultbarcolor = "#668CFF";
+var defaultbarwidth = 150;
+var gvtkheaderyoff = -2;
+function makeTk(tk, block) {
+  const template = tk._template;
+  delete tk._template;
+  if (!template.tracks) throw ".tracks[] missing from " + tk.name + " track";
+  if (template.tracks.length == 0) throw ".tracks[] length 0 from " + tk.name + " track";
+  tk.tracks = [];
+  const nameset = /* @__PURE__ */ new Set();
+  for (const t0 of template.tracks) {
+    const t = {};
+    for (const k in t0) {
+      t[k] = t0[k];
+    }
+    if (!t.name) throw "no name for member track of " + tk.name + ": " + JSON.stringify(t);
+    if (nameset.has(t.name)) throw "duplicating member track name: " + t.name;
+    nameset.add(t.name);
+    if (!t.type) throw "no type for member track of " + tk.name + ": " + JSON.stringify(t);
+    if (!t.file && !t.url) throw 'neither file or url given for member "' + t.name + '" of ' + tk.name;
+    if (t.type == "bedj") {
+    } else if (t.type == "bigwig") {
+      bigwigfromtemplate(t, t0);
+    } else {
+      throw "invalid type of member track of " + tk.name + ": " + t.type;
+    }
+    t.toppad = t.toppad == void 0 ? 4 : t.toppad;
+    t.bottompad = t.bottompad == void 0 ? 4 : t.bottompad;
+    t.y = 0;
+    tk.tracks.push(t);
+  }
+  tk.geneset = /* @__PURE__ */ new Set();
+  if (template.genevaluetrack) {
+    if (!template.genevaluetrack.file && template.genevaluetrack.url) throw "no .file or .url for genevaluetrack";
+    tk.genevaluetrack = {
+      file: template.genevaluetrack.file,
+      url: template.genevaluetrack.url
+    };
+  }
+  if (template.genevaluetklst) {
+    if (!Array.isArray(template.genevaluetklst)) throw ".genevaluetklst should be an array";
+    if (template.genevaluetklst.length == 0) throw "zero length of .genevaluetklst";
+    tk.genevaluetklst = [];
+    for (const gvtk of template.genevaluetklst) {
+      if (!gvtk.name) throw "name missing for one genevalue track";
+      if (!gvtk.file && !gvtk.url) throw "no file or url for genevalue track " + gvtk.name;
+      const t = {};
+      for (const k in gvtk) t[k] = gvtk[k];
+      tk.genevaluetklst.push(t);
+    }
+  }
+  if (template.bigwigsetting) {
+    tk.bigwigsetting = {};
+    if (template.bigwigsetting.scale) {
+      if (template.bigwigsetting.scale.max) {
+        if (!Number.isFinite(template.bigwigsetting.scale.max)) throw "invalid max value in bigwigsetting.scale";
+        if (!Number.isFinite(template.bigwigsetting.scale.min))
+          throw "invalid or missing min value in bigwigsetting.scale";
+        if (template.bigwigsetting.scale.max <= template.bigwigsetting.scale.min)
+          throw "max <= min in bigwigsetting.scale";
+        tk.bigwigsetting.scale = { min: template.bigwigsetting.scale.min, max: template.bigwigsetting.scale.max };
+      }
+    }
+    for (const t of tk.tracks) {
+      if (t.type != "bigwig") continue;
+      if (tk.bigwigsetting.scale) {
+        if (tk.bigwigsetting.scale.max != void 0) {
+          delete t.scale.auto;
+          t.scale = {
+            min: tk.bigwigsetting.scale.min,
+            max: tk.bigwigsetting.scale.max
+          };
+        } else if (tk.bigwigsetting.scale.percentile) {
+          delete t.scale.auto;
+          t.scale.percentile = tk.bigwigsetting.scale.percentile;
+        }
+      }
+      if (tk.bigwigsetting.pcolor) t.pcolor = tk.bigwigsetting.pcolor;
+      if (tk.bigwigsetting.ncolor) t.ncolor = tk.bigwigsetting.ncolor;
+      if (tk.bigwigsetting.pcolor2) t.pcolor = tk.bigwigsetting.pcolor2;
+      if (tk.bigwigsetting.ncolor2) t.ncolor = tk.bigwigsetting.ncolor2;
+    }
+  }
+  if (tk.genevaluetrack) {
+    const gvtk = tk.genevaluetrack;
+    delete tk.genevaluetrack;
+    gvtk.name = tk.genevaluetype;
+    delete tk.genevaluetype;
+    if (tk.genevaluematchname) {
+      gvtk.matchname = tk.genevaluematchname;
+      delete tk.genevaluematchname;
+    }
+    if (tk.genebarcolor) {
+      gvtk.barcolor = tk.genebarcolor;
+      delete tk.genebarcolor;
+    }
+    if (tk.genebarwidth) {
+      gvtk.barwidth = tk.genebarwidth;
+      delete tk.genebarwidth;
+    }
+    if (!tk.genevaluetklst) {
+      tk.genevaluetklst = [];
+    }
+    tk.genevaluetklst.push(gvtk);
+  }
+  if (tk.genevaluetklst) {
+    for (const gvtk of tk.genevaluetklst) {
+      gvtk.axisg = tk.gright.append("g");
+      gvtk.label = tk.gright.append("text").attr("font-size", tk.axisfontsize + 2).attr("font-family", font).attr("class", "sja_clbtext").on("click", () => {
+        gvtklabelclick(gvtk, tk, block);
+      });
+      if (!gvtk.barcolor) gvtk.barcolor = defaultbarcolor;
+      if (!gvtk.barwidth) gvtk.barwidth = defaultbarwidth;
+    }
+    tk.toppad = tk.genevaluetklst.length == 1 ? 20 : 40;
+    if (tk.genevaluetklst.length == 1) {
+      tk.genevaluetklst[0].label.attr("text-anchor", "end").attr("x", -block.rpad).attr("y", gvtkheaderyoff);
+    } else {
+      for (const gvtk of tk.genevaluetklst) {
+        gvtk.label.attr("y", tk.axisfontsize + 2 - tk.toppad).attr("text-anchor", "middle");
+      }
+    }
+    tk.sample2gvtk2gene = /* @__PURE__ */ new Map();
+    tk.genelsttip = new Menu({ padding: "5px" });
+    setrightwidth(tk, block);
+    tk.config_handle = block.maketklefthandle(tk, -block.labelfontsize + gvtkheaderyoff).text("CONFIG").attr("fill", "#858585").attr("x", 5).attr("text-anchor", "begin");
+    tk.changegenelabel = tk.gright.append("text").attr("text-anchor", "end").attr("font-size", tk.axisfontsize).attr("font-family", font).attr("x", -block.rpad).attr("y", gvtkheaderyoff).attr("class", "sja_clbtext").on("click", () => {
+      listgenes(tk.changegenelabel, tk, block);
+    });
+    if (tk.genevaluematchname) {
+      for (const gvtk of tk.genevaluetklst) {
+        if (!gvtk.matchname) gvtk.matchname = tk.genevaluematchname;
+      }
+      delete tk.genevaluematchname;
+    }
+  } else {
+    tk.toppad = 20;
+    tk.config_handle = block.maketkconfighandle(tk).attr("y", -5);
+  }
+  tk.config_handle.on("click", () => {
+    configPanel(tk, block);
+  });
+  const collectleftlabw = [tk.tklabel.attr("y", -10).node().getBBox().width];
+  if (block.legend && block.legend.holder) {
+    let willshowlegend = false;
+    if (tk.legendimg && tk.legendimg.file) {
+      willshowlegend = true;
+    } else if (tk.categories) {
+      willshowlegend = true;
+    } else if (tk.genevaluetklst) {
+      willshowlegend = tk.genevaluetklst.find((i) => i.multivaluekey);
+    }
+    if (willshowlegend) {
+      const [tr, td] = legend_newrow(block, tk.name);
+      tk.tr_legend = tr;
+      tk.td_legend = td;
+      tk.legendtip = new Menu({ padding: "" });
+    }
+    if (tk.legendimg && tk.legendimg.file) {
+      block.make_legend_img(tk.legendimg, tk.td_legend);
+    } else if (tk.categories) {
+      category2legend(tk.categories, tk.td_legend);
+    }
+    if (tk.genevaluetklst) {
+      for (const gvtk of tk.genevaluetklst) {
+        if (gvtk.multivaluekey) {
+          gvtk.legend = {
+            div: tk.td_legend.append("div"),
+            gene2hiddenkeys: /* @__PURE__ */ new Map()
+            // gene-specific setting
+          };
+          gvtk.legend.label_genespecific = gvtk.legend.div.append("div").style("display", "inline-block").style("margin", "5px 10px 10px 0px").style("color", "#858585").style("vertical-align", "top");
+          gvtk.legend.contentdiv = gvtk.legend.div.append("div").style("display", "inline-block").style("margin", "0px 10px 10px 0px").style("vertical-align", "top").style("width", "800px");
+        }
+      }
+    }
+  }
+  for (const t of tk.tracks) {
+    t.g = tk.glider.append("g").attr("transform", "translate(0,0)");
+    t.errg = t.g.append("g");
+    t.immobileg = t.g.append("g").attr("transform", "translate(0,0)");
+    t.tktip = tk.tktip;
+    t.tklabel = t.immobileg.append("text").attr("font-size", tk.axisfontsize).attr("font-family", font).attr("text-anchor", "end").attr("dominant-baseline", "central").attr("x", block.tkleftlabel_xshift).attr("y", 0).text(t.name).on("mousedown", (event) => {
+      event.stopPropagation();
+      event.preventDefault();
+      movetrack(t, tk, event.clientY);
+    });
+    if (t.list_description) {
+      t.tklabel.on("mouseover", (event) => {
+        t.tktip.clear().show(event.clientX, event.clientY);
+        make_table_2col(t.tktip.d, t.list_description).style("margin", "");
+      }).on("mouseout", () => t.tktip.hide());
+    }
+    collectleftlabw.push(t.tklabel.node().getBBox().width);
+    if (tk.genevaluetklst) {
+      t.genevg = t.immobileg.append("g");
+      t.gvtkattr = /* @__PURE__ */ new Map();
+      for (const gvtk of tk.genevaluetklst) {
+        const obj = {};
+        obj.gvtk_g_xshift = t.genevg.append("g");
+        obj.hline = obj.gvtk_g_xshift.append("line").attr("stroke", "#ccc").attr("stroke-dasharray", "2,3").attr("shape-rendering", "crispEdges");
+        obj.gvtk_g = obj.gvtk_g_xshift.append("g");
+        if (gvtk.multivaluekey) {
+        } else {
+          obj.bar = obj.gvtk_g.append("rect").attr("width", 1);
+        }
+        t.gvtkattr.set(gvtk.name, obj);
+      }
+    }
+    if (t.type == tkt.bedj) {
+      t.img = t.g.append("image");
+    } else if (t.type == tkt.bigwig) {
+      t.img = t.g.append("image");
+      t.leftaxis = t.immobileg.append("g");
+    }
+  }
+  tk.leftLabelMaxwidth = Math.max(...collectleftlabw);
+  block.setllabel();
+}
+async function loadTk(tk, block) {
+  if (tk.uninitiated) {
+    makeTk(tk, block);
+    delete tk.uninitiated;
+  }
+  block.tkcloakon(tk);
+  const tasks = [];
+  for (const t of tk.tracks) {
+    t.height = 20;
+    t.errg.selectAll("*").remove();
+    if (t.type == tkt.bedj) {
+      const arg = block.tkarg_bedj(t);
+      if (tk.categories) {
+        arg.categories = tk.categories;
+      }
+      const task = dofetch3("tkbedj", { method: "POST", body: JSON.stringify(arg) }).then((data) => {
+        if (data.error) throw data.error;
+        t.height = t.toppad + data.height + t.bottompad;
+        t.img.attr("width", block.width).attr("height", data.height).attr("xlink:href", data.src);
+        if (block.pannedpx != void 0) {
+          t.img.attr("x", block.pannedpx * -1);
+        }
+        block.bedj_tooltip(t, data);
+      }).catch((e) => tkerror(t, e.message || e));
+      tasks.push(task);
+    } else if (t.type == tkt.bigwig) {
+      const arg = block.tkarg_q(t);
+      const task = dofetch3("tkbigwig", {
+        method: "POST",
+        body: JSON.stringify(arg)
+      }).then((data) => {
+        if (data.error) throw data.error;
+        t.height = t.toppad + t.barheight + t.bottompad;
+        t.img.attr("width", block.width).attr("height", t.barheight).attr("xlink:href", data.src);
+        if (block.pannedpx != void 0) {
+          t.img.attr("x", block.pannedpx * -1);
+        }
+        if (data.minv != void 0) {
+          t.scale.min = data.minv;
+        }
+        if (data.maxv != void 0) {
+          t.scale.max = data.maxv;
+        }
+        t.leftaxis.selectAll("*").remove();
+        if (data.nodata) {
+        } else {
+          const scale = linear().domain([t.scale.min, t.scale.max]).range([t.barheight, 0]);
+          axisstyle({
+            axis: t.leftaxis.call(axisLeft().scale(scale).tickValues([t.scale.min, t.scale.max])),
+            color: "black",
+            showline: true
+          });
+        }
+      }).catch((e) => tkerror(t, e.message || e));
+      tasks.push(task);
+    }
+  }
+  if (tk.genevaluetklst) {
+    tk.sample2gvtk2gene.clear();
+    tk.geneset.clear();
+    for (const gvtk of tk.genevaluetklst) {
+      const arg = block.tkarg_bedj(gvtk);
+      arg.getdata = 1;
+      const task = dofetch3("tkbedj", { method: "POST", body: JSON.stringify(arg) }).then((data) => {
+        if (data.error) throw data.error;
+        if (data.items && data.items.length > 0) {
+          for (const i of data.items) {
+            if (!i.gene || !i.sample) continue;
+            tk.geneset.add(i.gene);
+            if (!tk.sample2gvtk2gene.has(i.sample)) {
+              tk.sample2gvtk2gene.set(i.sample, /* @__PURE__ */ new Map());
+            }
+            if (!tk.sample2gvtk2gene.get(i.sample).has(gvtk.name)) {
+              tk.sample2gvtk2gene.get(i.sample).set(gvtk.name, /* @__PURE__ */ new Map());
+            }
+            if (gvtk.multivaluekey) {
+              if (!tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).has(i.gene)) {
+                tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).set(i.gene, []);
+              }
+              tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).get(i.gene).push({
+                name: i[gvtk.multivaluekey],
+                value: i.value
+              });
+            } else {
+              tk.sample2gvtk2gene.get(i.sample).get(gvtk.name).set(i.gene, i.value);
+            }
+          }
+        }
+      });
+      tasks.push(task);
+    }
+  }
+  try {
+    await Promise.all(tasks);
+    render_tk(tk, block);
+    block.tkcloakoff(tk, {});
+  } catch (e) {
+    if (e.stack) console.log(e.stack);
+    block.tkcloakoff(tk, { error: e.message || e });
+  }
+  for (const t of tk.tracks) {
+    t.immobileg.attr("transform", "translate(0,0)");
+  }
+  block.block_setheight();
+}
+function render_tk(tk, block) {
+  tk.height_main = 0;
+  for (const t of tk.tracks) {
+    t.y = tk.height_main;
+    t.g.transition().attr("transform", "translate(0," + t.y + ")");
+    if (t.type == tkt.bedj) {
+      t.img.attr("x", 0);
+      t.tklabel.attr("y", (t.height - t.toppad - t.bottompad) / 2);
+    } else if (t.type == tkt.bigwig) {
+      t.img.attr("x", 0);
+      t.tklabel.attr("y", t.barheight / 2);
+    }
+    tk.height_main += t.height;
+  }
+  tk.height_main += tk.toppad + tk.bottompad;
+  if (tk.genevaluetklst) {
+    if (tk.geneset.size > 0) {
+      const showgene = [...tk.geneset][0];
+      showgeneplot(tk, block, showgene);
+    } else {
+      for (const gvtk of tk.genevaluetklst) {
+        gvtk.label.text("");
+      }
+      for (const t of tk.tracks) {
+        for (const v of t.gvtkattr.values()) {
+          v.hline.transition().attr("x2", 0);
+          if (v.bar) {
+            v.bar.transition().attr("width", 0);
+          } else {
+            v.gvtk_g.selectAll("*").remove();
+          }
+        }
+      }
+      for (const gvtk of tk.genevaluetklst) {
+        gvtk.axisg.selectAll("*").remove();
+      }
+    }
+  }
+}
+function showgeneplot(tk, block, gene) {
+  tk.__usegene = gene;
+  let xoff = 0;
+  for (const gvtk of tk.genevaluetklst) {
+    let minv = 0;
+    let maxv = 0;
+    const samplekey = gvtk.matchname || "name";
+    let colorvend;
+    if (gvtk.multivaluekey) {
+      gvtk.runtimekey2color_genespecific = /* @__PURE__ */ new Map();
+      colorvend = ordinal(category10_default);
+    }
+    for (const t of tk.tracks) {
+      t.gvtkattr.get(gvtk.name).value = void 0;
+      const samplename = t[samplekey];
+      if (!tk.sample2gvtk2gene.has(samplename)) {
+        continue;
+      }
+      if (!tk.sample2gvtk2gene.get(samplename).has(gvtk.name)) {
+        continue;
+      }
+      const genev = tk.sample2gvtk2gene.get(samplename).get(gvtk.name).get(gene);
+      if (genev == void 0) continue;
+      t.gvtkattr.get(gvtk.name).value = genev;
+      if (gvtk.multivaluekey) {
+        for (const v of genev) {
+          if (!v.name) {
+            continue;
+          }
+          if (!gvtk.runtimekey2color_genespecific.has(v.name)) {
+            gvtk.runtimekey2color_genespecific.set(v.name, colorvend(v.name));
+          }
+          maxv = Math.max(maxv, v.value);
+        }
+      } else {
+        maxv = Math.max(maxv, genev);
+      }
+    }
+    for (const t of tk.tracks) {
+      t.genevg.attr("transform", "translate(" + (block.width + block.rpad) + ",0)");
+      const obj = t.gvtkattr.get(gvtk.name);
+      const glyph_midy = (t.height - t.toppad - t.bottompad) / 2;
+      obj.gvtk_g_xshift.transition().attr("transform", "translate(" + xoff + ",0)");
+      obj.hline.transition().attr("y1", glyph_midy).attr("y2", glyph_midy).attr("x2", obj.value == void 0 ? 0 : gvtk.barwidth);
+      if (gvtk.multivaluekey) {
+        obj.gvtk_g.selectAll("*").remove();
+        if (obj.value) {
+          const radius = Math.min(8, glyph_midy);
+          let showlst = obj.value;
+          if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene)) {
+            showlst = obj.value.filter((i) => !gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(i.name));
+          }
+          obj.dotg = obj.gvtk_g.selectAll().data(showlst).enter().append("g").attr("transform", (d) => "translate(" + gvtk.barwidth * d.value / maxv + "," + glyph_midy + ")");
+          obj.dotg.append("circle").attr("r", radius).attr("fill", (d) => gvtk.runtimekey2color_genespecific.get(d.name)).attr("fill-opacity", 0.2).attr("stroke", (d) => gvtk.runtimekey2color_genespecific.get(d.name)).on("mouseover", (event, d) => {
+            const valuekeyname = d.name;
+            for (const t2 of tk.tracks) {
+              const obj2 = t2.gvtkattr.get(gvtk.name);
+              if (!obj2.dotg) continue;
+              obj2.dotg.filter((d2) => d2.name == valuekeyname).select("circle").attr("fill-opacity", 1);
+            }
+            const p = event.target.getBoundingClientRect();
+            tk.tktip.clear().show(p.left, p.top);
+            const lst = [
+              { k: "sample", v: t.name },
+              { k: gvtk.multivaluekey, v: d.name },
+              { k: "value", v: d.value }
+            ];
+            setTimeout(make_table_2col(tk.tktip.d, lst), 500);
+          }).on("mouseout", (event, d) => {
+            const valuekeyname = d.name;
+            for (const t2 of tk.tracks) {
+              const obj2 = t2.gvtkattr.get(gvtk.name);
+              if (!obj2.dotg) continue;
+              obj2.dotg.filter((d2) => d2.name == valuekeyname).select("circle").attr("fill-opacity", 0.2);
+            }
+            tk.tktip.hide();
+          });
+        }
+      } else {
+        if (!Number.isFinite(obj.value) || obj.value == 0) {
+          obj.bar.transition().attr("width", 0);
+        } else {
+          obj.bar.attr("fill", gvtk.barcolor).attr("height", t.height - t.toppad - t.bottompad).transition().attr("width", Math.max(1, gvtk.barwidth * obj.value / maxv));
+        }
+      }
+    }
+    if (tk.genevaluetklst.length > 1) {
+      gvtk.label.transition().attr("x", xoff + gvtk.barwidth / 2);
+    }
+    gvtk.label.text(gene + " " + gvtk.name);
+    {
+      const axis = axisTop().ticks(3).scale(linear().domain([minv, maxv]).range([0, gvtk.barwidth]));
+      if (gvtk.axistickformat) {
+        axis.tickFormat(format(gvtk.axistickformat));
+      }
+      axisstyle({
+        axis: gvtk.axisg.transition().attr("transform", "translate(" + xoff + "," + gvtkheaderyoff + ")").call(axis),
+        color: "black",
+        showline: true
+      });
+    }
+    xoff += gvtk.barwidth + genevaluexspace;
+  }
+  if (tk.geneset.size == 1) {
+    tk.changegenelabel.text("");
+  } else {
+    tk.changegenelabel.text("CHANGE GENE");
+    if (tk.genevaluetklst.length == 1) {
+      const w = tk.genevaluetklst[0].label.node().getBBox().width;
+      tk.changegenelabel.attr("x", -block.rpad - w - 10);
+    }
+  }
+  showlegend_gvtk(tk, block);
+}
+function showlegend_gvtk(tk, block) {
+  if (!tk.genevaluetklst || !tk.tr_legend) return;
+  for (const gvtk of tk.genevaluetklst) {
+    if (gvtk.runtimekey2color_genespecific) {
+      gvtk.legend.label_genespecific.text(tk.__usegene + " " + gvtk.name + " " + gvtk.multivaluekey);
+      gvtk.legend.contentdiv.selectAll("*").remove();
+      const lst = [];
+      for (const [name, color] of gvtk.runtimekey2color_genespecific.entries()) {
+        lst.push({ name, color });
+      }
+      if (gvtk.sitekeytrickysort) {
+        lst.sort((a, b) => Number.parseInt(a.name.substr(1)) - Number.parseInt(b.name.substr(1)));
+      }
+      for (const { name, color } of lst) {
+        const cell = gvtk.legend.contentdiv.append("div").style("display", "inline-block").attr("class", "sja_clb").on("click", () => {
+          tk.legendtip.clear().showunder(cell.node());
+          if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene) && gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(name)) {
+            tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show").on("click", () => {
+              tk.legendtip.hide();
+              gvtk.legend.gene2hiddenkeys.get(tk.__usegene).delete(name);
+              showgeneplot(tk, block, tk.__usegene);
+            });
+          } else {
+            tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Hide").on("click", () => {
+              tk.legendtip.hide();
+              if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene))
+                gvtk.legend.gene2hiddenkeys.set(tk.__usegene, /* @__PURE__ */ new Set());
+              gvtk.legend.gene2hiddenkeys.get(tk.__usegene).add(name);
+              showgeneplot(tk, block, tk.__usegene);
+            });
+          }
+          tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show only").on("click", () => {
+            tk.legendtip.hide();
+            if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene))
+              gvtk.legend.gene2hiddenkeys.set(tk.__usegene, /* @__PURE__ */ new Set());
+            gvtk.legend.gene2hiddenkeys.get(tk.__usegene).clear();
+            for (const name2 of gvtk.runtimekey2color_genespecific.keys()) {
+              if (name2 != name) gvtk.legend.gene2hiddenkeys.get(tk.__usegene).add(name2);
+            }
+            showgeneplot(tk, block, tk.__usegene);
+          });
+          tk.legendtip.d.append("div").attr("class", "sja_menuoption").text("Show all").on("click", () => {
+            tk.legendtip.hide();
+            if (!gvtk.legend.gene2hiddenkeys.has(tk.__usegene)) return;
+            gvtk.legend.gene2hiddenkeys.get(tk.__usegene).clear();
+            showgeneplot(tk, block, tk.__usegene);
+          });
+        });
+        if (gvtk.legend.gene2hiddenkeys.has(tk.__usegene) && gvtk.legend.gene2hiddenkeys.get(tk.__usegene).has(name)) {
+          cell.append("span").style("color", "#858585").style("text-decoration", "line-through").text(name);
+        } else {
+          cell.append("span").attr("class", "sja_mcdot").style("background-color", color).style("margin-left", "3px").html("&nbsp;&nbsp;");
+          cell.append("span").text(name);
+        }
+      }
+    }
+  }
+}
+function listgenes(label, tk, block) {
+  tk.tkconfigtip.clear().showunder(label.node());
+  const name = Math.random().toString();
+  for (const gene of tk.geneset) {
+    const row = tk.tkconfigtip.d.append("div").style("padding-bottom", "3px");
+    const id = Math.random().toString();
+    const radio = row.append("input").attr("type", "radio").attr("id", id).attr("name", name).on("change", () => {
+      showgeneplot(tk, block, gene);
+    });
+    if (gene == tk.__usegene) {
+      radio.attr("checked", 1);
+    }
+    row.append("label").attr("for", id).html("&nbsp;" + gene);
+  }
+}
+function movetrack(t, tk, y0) {
+  const body = select_default(document.body);
+  body.on("mousemove", (event) => {
+    const dy = event.clientY - y0;
+    t.g.attr("transform", "translate(0," + (t.y + dy) + ")");
+    let tkidx = 0;
+    for (let i = 0; i < tk.tracks.length; i++) {
+      if (tk.tracks[i].name == t.name) {
+        tkidx = i;
+        break;
+      }
+    }
+    if (dy < 0 && tkidx > 0) {
+      let t2idx = tkidx - 1, t2 = tk.tracks[t2idx];
+      while (t2.hidden) {
+        t2idx--;
+        if (t2idx < 0) {
+          return;
+        }
+        t2 = tk.tracks[t2idx];
+      }
+      if (!t2) {
+        return;
+      }
+      if (-dy >= t2.height) {
+        tk.tracks[t2idx] = t;
+        tk.tracks[tkidx] = t2;
+        t.y = t2.y;
+        t2.y += t.height;
+        t2.g.transition().attr("transform", "translate(0," + t2.y + ")");
+        y0 = event.clientY;
+      }
+    } else if (dy > 0 && tkidx < tk.tracks.length - 1) {
+      let t2idx = tkidx + 1, t2 = tk.tracks[t2idx];
+      while (t2.hidden) {
+        t2idx++;
+        if (t2idx >= tk.tracks.length) {
+          return;
+        }
+        t2 = tk.tracks[t2idx];
+      }
+      if (!t2) {
+        return;
+      }
+      if (dy >= t2.height) {
+        tk.tracks[t2idx] = t;
+        tk.tracks[tkidx] = t2;
+        t2.y = t.y;
+        t.y += t2.height;
+        t2.g.transition().attr("transform", "translate(0," + t2.y + ")");
+        y0 = event.clientY;
+      }
+    }
+  });
+  body.on("mouseup", () => {
+    t.g.transition().attr("transform", "translate(0," + t.y + ")");
+    body.on("mousemove", null).on("mouseup", null);
+  });
+}
+function configPanel(tk, block) {
+  tk.tkconfigtip.clear().showunder(tk.config_handle.node());
+  const d = tk.tkconfigtip.d;
+  {
+    const hasbw = tk.tracks.find((t) => t.type == tkt.bigwig);
+    if (hasbw) {
+      d.append("div").append("div").style("margin-bottom", "15px").style("display", "inline-block").attr("class", "sja_menuoption").text("Common settings for all bigWig member tracks").on("click", () => {
+        configPanel_bwcommon(tk, block);
+      });
+    }
+  }
+  configPanel_uniformheight(d, tk, block);
+  configPanel_tkheights(d, tk, block);
+  d.append("div").style("margin-top", "5px").style("color", "#858585").text("To reorder member tracks, drag on track name on the left of track display.");
+}
+function setrightwidth(tk, block) {
+  tk.rightheadw_tk = 30;
+  if (tk.genevaluetklst) {
+    for (const t of tk.genevaluetklst) {
+      tk.rightheadw_tk += t.barwidth;
+    }
+    tk.rightheadw_tk += genevaluexspace * (tk.genevaluetklst.length - 1);
+  }
+  block.rightheadw = 0;
+  for (const t of block.tklst) {
+    block.rightheadw = Math.max(block.rightheadw, t.rightheadw_tk);
+  }
+  block.blocksetw();
+}
+function configPanel_bwcommon(tk, block) {
+  tk.tkconfigtip.clear();
+  const mock = {
+    scale: { auto: 1 },
+    normalize: { disable: 1 }
+  };
+  if (tk.bigwigsetting) {
+    for (const k in tk.bigwigsetting) {
+      mock[k] = tk.bigwigsetting[k];
+    }
+    if (tk.bigwigsetting.scale) {
+      delete mock.scale.auto;
+      for (const k in tk.bigwigsetting.scale) mock.scale[k] = tk.bigwigsetting.scale[k];
+    }
+  }
+  {
+    const t1 = tk.tracks.find((t) => t.type == tkt.bigwig);
+    if (!mock.pcolor) mock.pcolor = t1.pcolor;
+    if (!mock.pcolor2) mock.pcolor2 = t1.pcolor2;
+    if (!mock.ncolor) mock.ncolor = t1.ncolor;
+    if (!mock.ncolor2) mock.ncolor2 = t1.ncolor2;
+    if (!mock.barheight) mock.barheight = t1.barheight;
+  }
+  bigwigconfigpanel(mock, block, tk.tkconfigtip.d, (code) => {
+    if (!tk.bigwigsetting) tk.bigwigsetting = {};
+    if (!tk.bigwigsetting.scale) tk.bigwigsetting.scale = {};
+    switch (code) {
+      case bwSetting.height:
+        tk.bigwigsetting.barheight = mock.barheight;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.barheight = mock.barheight;
+        });
+        break;
+      case bwSetting.pcolor:
+        tk.bigwigsetting.pcolor = mock.pcolor;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.pcolor = mock.pcolor;
+        });
+        break;
+      case bwSetting.ncolor:
+        tk.bigwigsetting.ncolor = mock.ncolor;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.ncolor = mock.ncolor;
+        });
+        break;
+      case bwSetting.pcolor2:
+        tk.bigwigsetting.pcolor2 = mock.pcolor2;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.pcolor2 = mock.pcolor2;
+        });
+        break;
+      case bwSetting.ncolor2:
+        tk.bigwigsetting.ncolor2 = mock.ncolor2;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.ncolor2 = mock.ncolor2;
+        });
+        break;
+      case bwSetting.autoscale:
+        tk.bigwigsetting.scale.auto = 1;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.scale.auto = 1;
+        });
+        break;
+      case bwSetting.fixedscale:
+        delete tk.bigwigsetting.scale.auto;
+        tk.bigwigsetting.scale.min = mock.scale.min;
+        tk.bigwigsetting.scale.max = mock.scale.max;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) {
+            delete t.scale.auto;
+            t.scale.min = mock.scale.min;
+            t.scale.max = mock.scale.max;
+          }
+        });
+        break;
+      case bwSetting.percentilescale:
+        delete tk.bigwigsetting.scale.auto;
+        tk.bigwigsetting.scale.percentile = mock.scale.percentile;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) {
+            delete t.scale.auto;
+            t.scale.percentile = mock.scale.percentile;
+          }
+        });
+        break;
+      case bwSetting.nodotplot:
+        delete tk.bigwigsetting.dotplotfactor;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) delete t.dotplotfactor;
+        });
+        break;
+      case bwSetting.usedotplot:
+        tk.bigwigsetting.dotplotfactor = mock.dotplotfactor;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.dotplotfactor = mock.dotplotfactor;
+        });
+        break;
+      case bwSetting.usedividefactor:
+        delete tk.bigwigsetting.normalize.disable;
+        tk.bigwigsetting.normalize.dividefactor = mock.normalize.dividefactor;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) {
+            delete t.normalize.disable;
+            t.normalize.dividefactor = mock.normalize.dividefactor;
+          }
+        });
+        break;
+      case bwSetting.nodividefactor:
+        tk.bigwigsetting.normalize.disable = 1;
+        tk.tracks.forEach((t) => {
+          if (t.type == tkt.bigwig) t.normalize.disable = 1;
+        });
+        break;
+    }
+    loadTk(tk, block);
+  });
+}
+function configPanel_uniformheight(d, tk, block) {
+  const row = d.append("div").style("margin-bottom", "10px");
+  row.append("span").style("color", "#858585").html("Set uniform height to all member tracks&nbsp;");
+  let maxheight = 0;
+  for (const t of tk.tracks) {
+    switch (t.type) {
+      case tkt.bigwig:
+        maxheight = Math.max(maxheight, t.barheight);
+        break;
+      case tkt.bedj:
+        maxheight = Math.max(maxheight, t.stackheight);
+        break;
+    }
+  }
+  row.append("input").attr("type", "number").property("value", maxheight).attr("min", 5).style("width", "80px").on("keyup", (event) => {
+    if (event.code != "Enter") return;
+    const v = Number.parseInt(event.target.value);
+    for (const t of tk.tracks) {
+      switch (t.type) {
+        case tkt.bigwig:
+          t.barheight = v;
+          break;
+        case tkt.bedj:
+          t.stackheight = v;
+          break;
+      }
+    }
+    block.tk_load(tk);
+  });
+}
+function configPanel_tkheights(d, tk, block) {
+  d.append("div").style("margin-bottom", "5px").style("color", "#858585").text("Set height for each track:");
+  let scrollholder = d;
+  if (tk.tracks.length > 8) {
+    scrollholder = d.append("div").style("display", "inline-block").style("height", "200px").style("resize", "vertical").style("overflow-y", "scroll");
+  }
+  const table = scrollholder.append("table").style("margin-left", "20px");
+  for (const t of tk.tracks) {
+    const tr = table.append("tr");
+    tr.append("td").text(t.name).style("vertical-align", "top");
+    const td = tr.append("td");
+    let v;
+    switch (t.type) {
+      case tkt.bigwig:
+        v = t.barheight;
+        break;
+      case tkt.bedj:
+        v = t.stackheight;
+        break;
+    }
+    td.append("input").attr("type", "number").property("value", v).attr("min", 5).style("width", "80px").on("keyup", (event) => {
+      if (event.code != "Enter") return;
+      const v2 = Number.parseInt(event.target.value);
+      switch (t.type) {
+        case tkt.bigwig:
+          t.barheight = v2;
+          break;
+        case tkt.bedj:
+          t.stackheight = v2;
+          break;
+      }
+      block.tk_load(tk);
+    });
+  }
+}
+function gvtklabelclick(gvtk, tk, block) {
+  tk.tkconfigtip.clear().showunder(gvtk.label.node());
+  {
+    const row = tk.tkconfigtip.d.append("div").style("margin-bottom", "10px").style("color", "#858585");
+    row.append("span").text(gvtk.name);
+    row.append("span").html("&nbsp;CONFIG").style("font-size", ".7em");
+  }
+  const table = tk.tkconfigtip.d.append("table");
+  {
+    const tr = table.append("tr");
+    tr.append("td").text("Max bar width");
+    tr.append("td").append("input").attr("type", "number").property("value", gvtk.barwidth).attr("min", 50).style("width", "50px").on("keyup", (event) => {
+      if (event.code != "Enter" && event.code != "NumpadEnter") return;
+      const w = Number.parseInt(event.target.value);
+      if (Number.isNaN(w) || w < 50) return;
+      gvtk.barwidth = w;
+      setrightwidth(tk, block);
+      showgeneplot(tk, block, tk.__usegene);
+    });
+  }
+  if (!gvtk.multivaluekey) {
+    const tr = table.append("tr");
+    tr.append("td").text("Bar color");
+    tr.append("td").append("input").attr("type", "color").property("value", gvtk.barcolor).on("change", (event) => {
+      gvtk.barcolor = event.target.value;
+      if (gvtk.multivaluekey) {
+      } else {
+        for (const t of tk.tracks) {
+          t.gvtkattr.get(gvtk.name).bar.attr("fill", gvtk.barcolor);
+        }
+      }
+    });
+    table.append("tr").append("td").attr("colspan", 2).append("button").text("Sort samples").on("click", () => {
+      tk.tracks.sort((a, b) => {
+        const va = a.gvtkattr.get(gvtk.name).value;
+        const vb = b.gvtkattr.get(gvtk.name).value;
+        if (vb == void 0) {
+          if (va == void 0) return 0;
+          return -1;
+        }
+        if (va == void 0) return 1;
+        return vb - va;
+      });
+      const currentgene = tk.__usegene;
+      render_tk(tk, block);
+      showgeneplot(tk, block, currentgene);
+      tk.tkconfigtip.hide();
+    });
+  }
+  if (gvtk.multivaluekey) {
+  }
+}
+function tkerror(t, msg) {
+  t.errg.append("text").text(msg).attr("font-size", 12).attr("y", 14);
+}
+export {
+  loadTk
+};
+//# sourceMappingURL=block.tk.pgv-JOIQVWL2.js.map