@sjcrh/proteinpaint-client 2.204.0 → 2.206.0

package/dist/chunk-VVDFRJVN.js

@@ -1,306 +0,0 @@
-// plots/brainRegions.svg.ts
-var cachedBrainAssets = {};
-async function loadBrainAssets(svgUrl, regionCodes) {
-  if (cachedBrainAssets[svgUrl]) return cachedBrainAssets[svgUrl];
-  const res = await fetch(svgUrl);
-  if (!res.ok) throw new Error(`failed to load ${svgUrl}: ${res.status}`);
-  const text = await res.text();
-  const doc = new DOMParser().parseFromString(text, "image/svg+xml");
-  const svgEl = doc.documentElement;
-  let viewBoxW = 0;
-  let viewBoxH = 0;
-  const vb = svgEl.getAttribute("viewBox");
-  if (vb) {
-    const parts = vb.trim().split(/\s+/).map(Number);
-    if (parts.length === 4 && Number.isFinite(parts[2]) && Number.isFinite(parts[3])) {
-      viewBoxW = parts[2];
-      viewBoxH = parts[3];
-    }
-  }
-  if (!viewBoxW || !viewBoxH) {
-    viewBoxW = Number(svgEl.getAttribute("width")) || 0;
-    viewBoxH = Number(svgEl.getAttribute("height")) || 0;
-  }
-  if (!viewBoxW || !viewBoxH) throw new Error(`could not determine viewBox dimensions from ${svgUrl}`);
-  const paths = {};
-  for (const code of regionCodes) {
-    const el = doc.getElementById(code);
-    const d = el?.getAttribute("d");
-    if (d) paths[code] = { d, transform: el?.getAttribute("transform") ?? null };
-  }
-  const assets = { paths, viewBoxW, viewBoxH };
-  cachedBrainAssets[svgUrl] = assets;
-  return assets;
-}
-function visualCenter(pathEl, gridN = 24, boundarySamples = 160) {
-  const bbox = pathEl.getBBox();
-  const svgRoot = pathEl.ownerSVGElement;
-  if (!svgRoot) {
-    return { x: bbox.x + bbox.width / 2, y: bbox.y + bbox.height / 2 };
-  }
-  const probe = svgRoot.createSVGPoint();
-  const len = pathEl.getTotalLength();
-  const bx = new Array(boundarySamples);
-  const by = new Array(boundarySamples);
-  for (let i = 0; i < boundarySamples; i++) {
-    const p = pathEl.getPointAtLength(i / boundarySamples * len);
-    bx[i] = p.x;
-    by[i] = p.y;
-  }
-  let bestX = bbox.x + bbox.width / 2;
-  let bestY = bbox.y + bbox.height / 2;
-  let bestMinSq = -Infinity;
-  for (let i = 0; i < gridN; i++) {
-    for (let j = 0; j < gridN; j++) {
-      const x = bbox.x + (i + 0.5) / gridN * bbox.width;
-      const y = bbox.y + (j + 0.5) / gridN * bbox.height;
-      probe.x = x;
-      probe.y = y;
-      if (!pathEl.isPointInFill(probe)) continue;
-      let minSq = Infinity;
-      for (let k = 0; k < boundarySamples; k++) {
-        const dx = bx[k] - x;
-        const dy = by[k] - y;
-        const d = dx * dx + dy * dy;
-        if (d < minSq) minSq = d;
-      }
-      if (minSq > bestMinSq) {
-        bestMinSq = minSq;
-        bestX = x;
-        bestY = y;
-      }
-    }
-  }
-  return { x: bestX, y: bestY };
-}
-function isPointInRegion(outerX, outerY, r) {
-  const svg = r.pathEl.ownerSVGElement;
-  if (!svg) return false;
-  const pt = svg.createSVGPoint();
-  pt.x = outerX;
-  pt.y = outerY;
-  const local = r.matrix ? pt.matrixTransform(r.matrix.inverse()) : pt;
-  return r.pathEl.isPointInFill(local);
-}
-function findInlineLabelSpot(r, labelW, labelH, others, gridN = 36) {
-  const localBBox = r.pathEl.getBBox();
-  const svg = r.pathEl.ownerSVGElement;
-  if (!svg) return null;
-  const corners = [
-    { x: localBBox.x, y: localBBox.y },
-    { x: localBBox.x + localBBox.width, y: localBBox.y },
-    { x: localBBox.x, y: localBBox.y + localBBox.height },
-    { x: localBBox.x + localBBox.width, y: localBBox.y + localBBox.height }
-  ];
-  const outerCorners = corners.map((c) => {
-    if (!r.matrix) return c;
-    const p = svg.createSVGPoint();
-    p.x = c.x;
-    p.y = c.y;
-    return p.matrixTransform(r.matrix);
-  });
-  const xs = outerCorners.map((c) => c.x);
-  const ys = outerCorners.map((c) => c.y);
-  const minX = Math.min(...xs);
-  const maxX = Math.max(...xs);
-  const minY = Math.min(...ys);
-  const maxY = Math.max(...ys);
-  let bestX = 0;
-  let bestY = 0;
-  let bestConflicts = Infinity;
-  let bestDistSq = Infinity;
-  let found = false;
-  for (let i = 0; i < gridN; i++) {
-    for (let j = 0; j < gridN; j++) {
-      const x = minX + (i + 0.5) / gridN * (maxX - minX);
-      const y = minY + (j + 0.5) / gridN * (maxY - minY);
-      if (!isPointInRegion(x, y, r)) continue;
-      const probes = [
-        [x, y],
-        [x - labelW / 2, y - labelH / 2],
-        [x + labelW / 2, y - labelH / 2],
-        [x - labelW / 2, y + labelH / 2],
-        [x + labelW / 2, y + labelH / 2]
-      ];
-      let conflicts = 0;
-      for (const [px, py] of probes) {
-        for (const o of others) {
-          if (isPointInRegion(px, py, o)) {
-            conflicts++;
-            break;
-          }
-        }
-      }
-      const dx = x - r.vx;
-      const dy = y - r.vy;
-      const distSq = dx * dx + dy * dy;
-      const better = conflicts < bestConflicts || conflicts === bestConflicts && distSq < bestDistSq;
-      if (better) {
-        bestX = x;
-        bestY = y;
-        bestConflicts = conflicts;
-        bestDistSq = distSq;
-        found = true;
-      }
-    }
-  }
-  return found ? { x: bestX, y: bestY, conflicts: bestConflicts } : null;
-}
-function findClearOffset(vx, vy, offset, labelW, labelH, others, viewBoxCx, viewBoxCy) {
-  const baseAngle = Math.atan2(vy - viewBoxCy, vx - viewBoxCx);
-  const angleDeltasDeg = [0, 30, -30, 60, -60, 90, -90, 120, -120, 150, -150, 180];
-  for (const delta of angleDeltasDeg) {
-    const angle = baseAngle + delta * Math.PI / 180;
-    const dx2 = Math.cos(angle);
-    const dy2 = Math.sin(angle);
-    const lx = vx + dx2 * offset;
-    const ly = vy + dy2 * offset;
-    const probePts = [
-      [lx, ly],
-      [lx - labelW / 2, ly - labelH / 2],
-      [lx + labelW / 2, ly - labelH / 2],
-      [lx - labelW / 2, ly + labelH / 2],
-      [lx + labelW / 2, ly + labelH / 2]
-    ];
-    let overlap = false;
-    for (const other of others) {
-      const svgRoot = other.pathEl.ownerSVGElement;
-      if (!svgRoot) continue;
-      const inv = other.matrix ? other.matrix.inverse() : null;
-      const pt = svgRoot.createSVGPoint();
-      for (const [x, y] of probePts) {
-        pt.x = x;
-        pt.y = y;
-        const localPt = inv ? pt.matrixTransform(inv) : pt;
-        if (other.pathEl.isPointInFill(localPt)) {
-          overlap = true;
-          break;
-        }
-      }
-      if (overlap) break;
-    }
-    if (!overlap) return { x: lx, y: ly, dx: dx2, dy: dy2 };
-  }
-  const dx = Math.cos(baseAngle);
-  const dy = Math.sin(baseAngle);
-  return { x: vx + dx * offset, y: vy + dy * offset, dx, dy };
-}
-var DIMMED_FILL = "#dcdcdc";
-var DIMMED_OPACITY = 0.35;
-function renderBrainSvg(opts) {
-  const {
-    holder,
-    width,
-    templateUrl,
-    assets,
-    regions,
-    fillByRegion,
-    tooltipByRegion,
-    title,
-    tip,
-    onRegionClick,
-    isRegionDimmed
-  } = opts;
-  const { paths: regionPaths, viewBoxW, viewBoxH } = assets;
-  const renderH = Math.round(width * viewBoxH / viewBoxW);
-  const col = holder.append("div");
-  if (title) {
-    col.append("div").style("text-align", "center").style("font-weight", "bold").style("font-size", "16px").style("margin-bottom", "8px").text(title);
-  }
-  const svg = col.append("svg").attr("width", width).attr("height", renderH).attr("viewBox", `0 0 ${viewBoxW} ${viewBoxH}`);
-  svg.append("image").attr("href", templateUrl).attr("x", 0).attr("y", 0).attr("width", viewBoxW).attr("height", viewBoxH).style("filter", "grayscale(1) brightness(1.05)").style("opacity", 0.55);
-  const overlayGroup = svg.append("g");
-  const rendered = [];
-  for (const [code, label] of Object.entries(regions)) {
-    const geom = regionPaths[code];
-    if (!geom) continue;
-    const dimmed = isRegionDimmed?.(code) === true;
-    const fillColor = dimmed ? DIMMED_FILL : fillByRegion(code);
-    const tooltipText = tooltipByRegion(code, label);
-    const displayLabel = label && label.includes("/") ? label : code;
-    const outerG = overlayGroup.append("g").style("cursor", "pointer");
-    const innerG = outerG.append("g");
-    if (geom.transform) innerG.attr("transform", geom.transform);
-    const baseStrokePx = 3;
-    let strokeWidth = baseStrokePx;
-    if (geom.transform) {
-      const m = innerG.node().transform.baseVal.consolidate()?.matrix;
-      if (m) {
-        const scale = (Math.abs(m.a) + Math.abs(m.d)) / 2;
-        if (scale > 0) strokeWidth = baseStrokePx / scale;
-      }
-    }
-    const pathSel = innerG.append("path").attr("d", geom.d).attr("fill", fillColor).attr("stroke", "#333").attr("stroke-width", strokeWidth).attr("opacity", dimmed ? DIMMED_OPACITY : 0.75);
-    const pathEl = pathSel.node();
-    const { x: localX, y: localY } = visualCenter(pathEl);
-    const localBBox = pathEl.getBBox();
-    const innerEl = innerG.node();
-    const matrix = innerEl.transform.baseVal.consolidate()?.matrix ?? null;
-    const ownerSvg = pathEl.ownerSVGElement;
-    const localPt = ownerSvg.createSVGPoint();
-    localPt.x = localX;
-    localPt.y = localY;
-    const outerPt = matrix ? localPt.matrixTransform(matrix) : { x: localX, y: localY };
-    const bboxW = localBBox.width * (matrix ? Math.abs(matrix.a) : 1);
-    const bboxH = localBBox.height * (matrix ? Math.abs(matrix.d) : 1);
-    rendered.push({
-      code,
-      displayLabel,
-      fillColor,
-      d: geom.d,
-      dimmed,
-      outerG,
-      innerG,
-      pathSel,
-      pathEl,
-      matrix,
-      vx: outerPt.x,
-      vy: outerPt.y,
-      bboxW,
-      bboxH
-    });
-    outerG.on("mouseover", (event) => {
-      tip.clear().show(event.clientX, event.clientY);
-      const lines = tooltipText.split("\n");
-      const tipDiv = tip.d.append("div").style("padding", "8px").style("font-size", "13px");
-      tipDiv.append("div").style("font-weight", "bold").style("margin-bottom", "4px").text(lines[0]);
-      for (let i = 1; i < lines.length; i++) {
-        tipDiv.append("div").text(lines[i]);
-      }
-    }).on("mouseout", () => {
-      tip.hide();
-    });
-    if (onRegionClick) {
-      outerG.on("click", (event) => onRegionClick(code, event));
-    }
-  }
-  const fontSize = 46;
-  for (const r of rendered) {
-    const labelW = r.displayLabel.length * fontSize * 0.62;
-    const labelH = fontSize;
-    const labelHalfDiag = Math.hypot(labelW / 2, labelH / 2);
-    const others = rendered.filter((rr) => rr !== r);
-    const regionRoomy = r.bboxW * r.bboxH > labelW * labelH * 1.5;
-    const inlinePoint = regionRoomy ? findInlineLabelSpot(r, labelW, labelH, others) : null;
-    const fitsInside = !!inlinePoint;
-    let labelX = inlinePoint ? inlinePoint.x : r.vx;
-    let labelY = inlinePoint ? inlinePoint.y : r.vy;
-    if (!fitsInside) {
-      if (!r.dimmed) r.pathSel.attr("opacity", 1);
-      r.innerG.insert("path", ":first-child").attr("d", r.d).attr("fill", "#fff").attr("stroke", "#fff").attr("stroke-width", 18).attr("stroke-linejoin", "round");
-      const offset = Math.max(r.bboxW, r.bboxH) / 2 + labelHalfDiag * 1.6;
-      const placed = findClearOffset(r.vx, r.vy, offset, labelW, labelH, others, viewBoxW / 2, viewBoxH / 2);
-      labelX = placed.x;
-      labelY = placed.y;
-      r.outerG.append("line").attr("x1", r.vx).attr("y1", r.vy).attr("x2", labelX - placed.dx * labelHalfDiag * 0.9).attr("y2", labelY - placed.dy * labelHalfDiag * 0.9).attr("stroke", "#333").attr("stroke-width", 2);
-    }
-    r.outerG.append("text").attr("x", labelX).attr("y", labelY).attr("text-anchor", "middle").attr("dominant-baseline", "central").attr("font-size", `${fontSize}px`).attr("font-weight", "bold").attr("fill", "#333").attr("paint-order", "stroke").attr("stroke", "#fff").attr("stroke-width", 6).text(r.displayLabel);
-  }
-  return svg.node();
-}
-
-export {
-  loadBrainAssets,
-  renderBrainSvg
-};
-//# sourceMappingURL=chunk-VVDFRJVN.js.map

package/dist/chunk-VVDFRJVN.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/brainRegions.svg.ts"],
-  "sourcesContent": ["import type { Menu } from '#dom'\n\nexport type RegionGeom = { d: string; transform: string | null }\n\nexport type BrainAssets = {\n\tpaths: { [code: string]: RegionGeom }\n\tviewBoxW: number\n\tviewBoxH: number\n}\n\ntype RegionRender = {\n\tcode: string\n\t// Text drawn on the shape: the region code, unless the config label is a merged\n\t// code like \"FG/FC\"\n\tdisplayLabel: string\n\tfillColor: string\n\td: string\n\tdimmed: boolean\n\touterG: any\n\tinnerG: any\n\tpathSel: any\n\tpathEl: SVGPathElement\n\tmatrix: DOMMatrix | null\n\tvx: number\n\tvy: number\n\tbboxW: number\n\tbboxH: number\n}\n\nconst cachedBrainAssets: { [svgUrl: string]: BrainAssets } = {}\n\nexport async function loadBrainAssets(svgUrl: string, regionCodes: string[]): Promise<BrainAssets> {\n\tif (cachedBrainAssets[svgUrl]) return cachedBrainAssets[svgUrl]\n\tconst res = await fetch(svgUrl)\n\tif (!res.ok) throw new Error(`failed to load ${svgUrl}: ${res.status}`)\n\tconst text = await res.text()\n\tconst doc = new DOMParser().parseFromString(text, 'image/svg+xml')\n\n\tconst svgEl = doc.documentElement\n\tlet viewBoxW = 0\n\tlet viewBoxH = 0\n\tconst vb = svgEl.getAttribute('viewBox')\n\tif (vb) {\n\t\tconst parts = vb.trim().split(/\\s+/).map(Number)\n\t\tif (parts.length === 4 && Number.isFinite(parts[2]) && Number.isFinite(parts[3])) {\n\t\t\tviewBoxW = parts[2]\n\t\t\tviewBoxH = parts[3]\n\t\t}\n\t}\n\tif (!viewBoxW || !viewBoxH) {\n\t\tviewBoxW = Number(svgEl.getAttribute('width')) || 0\n\t\tviewBoxH = Number(svgEl.getAttribute('height')) || 0\n\t}\n\tif (!viewBoxW || !viewBoxH) throw new Error(`could not determine viewBox dimensions from ${svgUrl}`)\n\n\tconst paths: { [code: string]: RegionGeom } = {}\n\tfor (const code of regionCodes) {\n\t\tconst el = doc.getElementById(code)\n\t\tconst d = el?.getAttribute('d')\n\t\tif (d) paths[code] = { d, transform: el?.getAttribute('transform') ?? null }\n\t}\n\tconst assets = { paths, viewBoxW, viewBoxH }\n\tcachedBrainAssets[svgUrl] = assets\n\treturn assets\n}\n\n// Find the \"pole of inaccessibility\" \u2014 the point inside the filled shape that\n// is farthest from any boundary point. Bbox center fails for concave shapes\n// (cingulate band, frontal lobe curve); this works for any closed path.\nfunction visualCenter(pathEl: SVGPathElement, gridN = 24, boundarySamples = 160): { x: number; y: number } {\n\tconst bbox = pathEl.getBBox()\n\tconst svgRoot = pathEl.ownerSVGElement\n\tif (!svgRoot) {\n\t\treturn { x: bbox.x + bbox.width / 2, y: bbox.y + bbox.height / 2 }\n\t}\n\tconst probe = svgRoot.createSVGPoint()\n\n\tconst len = pathEl.getTotalLength()\n\tconst bx: number[] = new Array(boundarySamples)\n\tconst by: number[] = new Array(boundarySamples)\n\tfor (let i = 0; i < boundarySamples; i++) {\n\t\tconst p = pathEl.getPointAtLength((i / boundarySamples) * len)\n\t\tbx[i] = p.x\n\t\tby[i] = p.y\n\t}\n\n\tlet bestX = bbox.x + bbox.width / 2\n\tlet bestY = bbox.y + bbox.height / 2\n\tlet bestMinSq = -Infinity\n\tfor (let i = 0; i < gridN; i++) {\n\t\tfor (let j = 0; j < gridN; j++) {\n\t\t\tconst x = bbox.x + ((i + 0.5) / gridN) * bbox.width\n\t\t\tconst y = bbox.y + ((j + 0.5) / gridN) * bbox.height\n\t\t\tprobe.x = x\n\t\t\tprobe.y = y\n\t\t\tif (!pathEl.isPointInFill(probe)) continue\n\t\t\tlet minSq = Infinity\n\t\t\tfor (let k = 0; k < boundarySamples; k++) {\n\t\t\t\tconst dx = bx[k] - x\n\t\t\t\tconst dy = by[k] - y\n\t\t\t\tconst d = dx * dx + dy * dy\n\t\t\t\tif (d < minSq) minSq = d\n\t\t\t}\n\t\t\tif (minSq > bestMinSq) {\n\t\t\t\tbestMinSq = minSq\n\t\t\t\tbestX = x\n\t\t\t\tbestY = y\n\t\t\t}\n\t\t}\n\t}\n\treturn { x: bestX, y: bestY }\n}\n\n// Test if an outer-space point lies inside a region's filled path.\nfunction isPointInRegion(outerX: number, outerY: number, r: RegionRender): boolean {\n\tconst svg = r.pathEl.ownerSVGElement\n\tif (!svg) return false\n\tconst pt = svg.createSVGPoint()\n\tpt.x = outerX\n\tpt.y = outerY\n\tconst local = r.matrix ? pt.matrixTransform(r.matrix.inverse()) : pt\n\treturn r.pathEl.isPointInFill(local)\n}\n\n// Find the best label position INSIDE a region. Returns the candidate inside\n// the region that minimizes label-rectangle probe points falling in any OTHER\n// region's path. Returns null only if no point inside the region exists.\nfunction findInlineLabelSpot(\n\tr: RegionRender,\n\tlabelW: number,\n\tlabelH: number,\n\tothers: RegionRender[],\n\tgridN = 36\n): { x: number; y: number; conflicts: number } | null {\n\tconst localBBox = r.pathEl.getBBox()\n\tconst svg = r.pathEl.ownerSVGElement\n\tif (!svg) return null\n\n\tconst corners = [\n\t\t{ x: localBBox.x, y: localBBox.y },\n\t\t{ x: localBBox.x + localBBox.width, y: localBBox.y },\n\t\t{ x: localBBox.x, y: localBBox.y + localBBox.height },\n\t\t{ x: localBBox.x + localBBox.width, y: localBBox.y + localBBox.height }\n\t]\n\tconst outerCorners = corners.map(c => {\n\t\tif (!r.matrix) return c\n\t\tconst p = svg.createSVGPoint()\n\t\tp.x = c.x\n\t\tp.y = c.y\n\t\treturn p.matrixTransform(r.matrix)\n\t})\n\tconst xs = outerCorners.map(c => c.x)\n\tconst ys = outerCorners.map(c => c.y)\n\tconst minX = Math.min(...xs)\n\tconst maxX = Math.max(...xs)\n\tconst minY = Math.min(...ys)\n\tconst maxY = Math.max(...ys)\n\n\tlet bestX = 0\n\tlet bestY = 0\n\tlet bestConflicts = Infinity\n\tlet bestDistSq = Infinity\n\tlet found = false\n\tfor (let i = 0; i < gridN; i++) {\n\t\tfor (let j = 0; j < gridN; j++) {\n\t\t\tconst x = minX + ((i + 0.5) / gridN) * (maxX - minX)\n\t\t\tconst y = minY + ((j + 0.5) / gridN) * (maxY - minY)\n\t\t\tif (!isPointInRegion(x, y, r)) continue\n\t\t\tconst probes: [number, number][] = [\n\t\t\t\t[x, y],\n\t\t\t\t[x - labelW / 2, y - labelH / 2],\n\t\t\t\t[x + labelW / 2, y - labelH / 2],\n\t\t\t\t[x - labelW / 2, y + labelH / 2],\n\t\t\t\t[x + labelW / 2, y + labelH / 2]\n\t\t\t]\n\t\t\tlet conflicts = 0\n\t\t\tfor (const [px, py] of probes) {\n\t\t\t\tfor (const o of others) {\n\t\t\t\t\tif (isPointInRegion(px, py, o)) {\n\t\t\t\t\t\tconflicts++\n\t\t\t\t\t\tbreak\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t}\n\t\t\tconst dx = x - r.vx\n\t\t\tconst dy = y - r.vy\n\t\t\tconst distSq = dx * dx + dy * dy\n\t\t\tconst better = conflicts < bestConflicts || (conflicts === bestConflicts && distSq < bestDistSq)\n\t\t\tif (better) {\n\t\t\t\tbestX = x\n\t\t\t\tbestY = y\n\t\t\t\tbestConflicts = conflicts\n\t\t\t\tbestDistSq = distSq\n\t\t\t\tfound = true\n\t\t\t}\n\t\t}\n\t}\n\treturn found ? { x: bestX, y: bestY, conflicts: bestConflicts } : null\n}\n\nfunction findClearOffset(\n\tvx: number,\n\tvy: number,\n\toffset: number,\n\tlabelW: number,\n\tlabelH: number,\n\tothers: RegionRender[],\n\tviewBoxCx: number,\n\tviewBoxCy: number\n): { x: number; y: number; dx: number; dy: number } {\n\tconst baseAngle = Math.atan2(vy - viewBoxCy, vx - viewBoxCx)\n\tconst angleDeltasDeg = [0, 30, -30, 60, -60, 90, -90, 120, -120, 150, -150, 180]\n\tfor (const delta of angleDeltasDeg) {\n\t\tconst angle = baseAngle + (delta * Math.PI) / 180\n\t\tconst dx = Math.cos(angle)\n\t\tconst dy = Math.sin(angle)\n\t\tconst lx = vx + dx * offset\n\t\tconst ly = vy + dy * offset\n\t\tconst probePts: [number, number][] = [\n\t\t\t[lx, ly],\n\t\t\t[lx - labelW / 2, ly - labelH / 2],\n\t\t\t[lx + labelW / 2, ly - labelH / 2],\n\t\t\t[lx - labelW / 2, ly + labelH / 2],\n\t\t\t[lx + labelW / 2, ly + labelH / 2]\n\t\t]\n\t\tlet overlap = false\n\t\tfor (const other of others) {\n\t\t\tconst svgRoot = other.pathEl.ownerSVGElement\n\t\t\tif (!svgRoot) continue\n\t\t\tconst inv = other.matrix ? other.matrix.inverse() : null\n\t\t\tconst pt = svgRoot.createSVGPoint()\n\t\t\tfor (const [x, y] of probePts) {\n\t\t\t\tpt.x = x\n\t\t\t\tpt.y = y\n\t\t\t\tconst localPt = inv ? pt.matrixTransform(inv) : pt\n\t\t\t\tif (other.pathEl.isPointInFill(localPt)) {\n\t\t\t\t\toverlap = true\n\t\t\t\t\tbreak\n\t\t\t\t}\n\t\t\t}\n\t\t\tif (overlap) break\n\t\t}\n\t\tif (!overlap) return { x: lx, y: ly, dx, dy }\n\t}\n\tconst dx = Math.cos(baseAngle)\n\tconst dy = Math.sin(baseAngle)\n\treturn { x: vx + dx * offset, y: vy + dy * offset, dx, dy }\n}\n\nexport type RenderBrainSvgOpts = {\n\tholder: any\n\twidth: number\n\ttemplateUrl: string\n\tassets: BrainAssets\n\tregions: { [code: string]: string }\n\tfillByRegion: (code: string) => string\n\ttooltipByRegion: (code: string, label: string) => string\n\ttitle?: string\n\ttip: Menu\n\t// Optional: invoked when the user clicks a region. Caller decides what to do\n\t// (e.g. open a hide/show menu at the event coordinates).\n\tonRegionClick?: (code: string, event: MouseEvent) => void\n\t// Optional: when true for a code, render that region with the \"no-data\" gray\n\t// fill and reduced opacity to signal it's filtered out.\n\tisRegionDimmed?: (code: string) => boolean\n}\n\nconst DIMMED_FILL = '#dcdcdc'\nconst DIMMED_OPACITY = 0.35\n\n// Render one brain SVG (template image + colored region paths + labels) into\n// `holder`. Returns the created <svg> element.\nexport function renderBrainSvg(opts: RenderBrainSvgOpts): SVGSVGElement {\n\tconst {\n\t\tholder,\n\t\twidth,\n\t\ttemplateUrl,\n\t\tassets,\n\t\tregions,\n\t\tfillByRegion,\n\t\ttooltipByRegion,\n\t\ttitle,\n\t\ttip,\n\t\tonRegionClick,\n\t\tisRegionDimmed\n\t} = opts\n\tconst { paths: regionPaths, viewBoxW, viewBoxH } = assets\n\tconst renderH = Math.round((width * viewBoxH) / viewBoxW)\n\n\tconst col = holder.append('div')\n\tif (title) {\n\t\tcol\n\t\t\t.append('div')\n\t\t\t.style('text-align', 'center')\n\t\t\t.style('font-weight', 'bold')\n\t\t\t.style('font-size', '16px')\n\t\t\t.style('margin-bottom', '8px')\n\t\t\t.text(title)\n\t}\n\n\tconst svg = col\n\t\t.append('svg')\n\t\t.attr('width', width)\n\t\t.attr('height', renderH)\n\t\t.attr('viewBox', `0 0 ${viewBoxW} ${viewBoxH}`)\n\n\tsvg\n\t\t.append('image')\n\t\t.attr('href', templateUrl)\n\t\t.attr('x', 0)\n\t\t.attr('y', 0)\n\t\t.attr('width', viewBoxW)\n\t\t.attr('height', viewBoxH)\n\t\t.style('filter', 'grayscale(1) brightness(1.05)')\n\t\t.style('opacity', 0.55)\n\n\tconst overlayGroup = svg.append('g')\n\n\t// PASS 1: render all paths + capture geometry so PASS 2's collision checks\n\t// (isPointInFill on neighbor paths) work against the final positioned paths.\n\tconst rendered: RegionRender[] = []\n\tfor (const [code, label] of Object.entries(regions)) {\n\t\tconst geom = regionPaths[code]\n\t\tif (!geom) continue\n\n\t\tconst dimmed = isRegionDimmed?.(code) === true\n\t\tconst fillColor = dimmed ? DIMMED_FILL : fillByRegion(code)\n\t\tconst tooltipText = tooltipByRegion(code, label)\n\t\t// A merged label like \"FG/FC\" (contains a slash) is drawn on the shape; all\n\t\t// other regions keep their short code (full names go only in the tooltip).\n\t\tconst displayLabel = label && label.includes('/') ? label : code\n\n\t\tconst outerG = overlayGroup.append('g').style('cursor', 'pointer')\n\t\tconst innerG = outerG.append('g')\n\t\tif (geom.transform) innerG.attr('transform', geom.transform)\n\n\t\t// stroke-width is in path-local coordinates. For paths with a transform\n\t\t// (AM, SN), divide by the matrix scale so the rendered stroke ends up\n\t\t// the same thickness as un-transformed regions.\n\t\tconst baseStrokePx = 3\n\t\tlet strokeWidth = baseStrokePx\n\t\tif (geom.transform) {\n\t\t\tconst m = (innerG.node() as SVGGraphicsElement).transform.baseVal.consolidate()?.matrix\n\t\t\tif (m) {\n\t\t\t\tconst scale = (Math.abs(m.a) + Math.abs(m.d)) / 2\n\t\t\t\tif (scale > 0) strokeWidth = baseStrokePx / scale\n\t\t\t}\n\t\t}\n\n\t\tconst pathSel = innerG\n\t\t\t.append('path')\n\t\t\t.attr('d', geom.d)\n\t\t\t.attr('fill', fillColor)\n\t\t\t.attr('stroke', '#333')\n\t\t\t.attr('stroke-width', strokeWidth)\n\t\t\t.attr('opacity', dimmed ? DIMMED_OPACITY : 0.75)\n\n\t\tconst pathEl = pathSel.node() as SVGPathElement\n\t\tconst { x: localX, y: localY } = visualCenter(pathEl)\n\t\tconst localBBox = pathEl.getBBox()\n\n\t\tconst innerEl = innerG.node() as SVGGraphicsElement\n\t\tconst matrix = innerEl.transform.baseVal.consolidate()?.matrix ?? null\n\t\tconst ownerSvg = pathEl.ownerSVGElement!\n\t\tconst localPt = ownerSvg.createSVGPoint()\n\t\tlocalPt.x = localX\n\t\tlocalPt.y = localY\n\t\tconst outerPt = matrix ? localPt.matrixTransform(matrix) : { x: localX, y: localY }\n\t\tconst bboxW = localBBox.width * (matrix ? Math.abs(matrix.a) : 1)\n\t\tconst bboxH = localBBox.height * (matrix ? Math.abs(matrix.d) : 1)\n\n\t\trendered.push({\n\t\t\tcode,\n\t\t\tdisplayLabel,\n\t\t\tfillColor,\n\t\t\td: geom.d,\n\t\t\tdimmed,\n\t\t\touterG,\n\t\t\tinnerG,\n\t\t\tpathSel,\n\t\t\tpathEl,\n\t\t\tmatrix,\n\t\t\tvx: outerPt.x,\n\t\t\tvy: outerPt.y,\n\t\t\tbboxW,\n\t\t\tbboxH\n\t\t})\n\n\t\touterG\n\t\t\t.on('mouseover', (event: MouseEvent) => {\n\t\t\t\ttip.clear().show(event.clientX, event.clientY)\n\t\t\t\tconst lines = tooltipText.split('\\n')\n\t\t\t\tconst tipDiv = tip.d.append('div').style('padding', '8px').style('font-size', '13px')\n\t\t\t\ttipDiv.append('div').style('font-weight', 'bold').style('margin-bottom', '4px').text(lines[0])\n\t\t\t\tfor (let i = 1; i < lines.length; i++) {\n\t\t\t\t\ttipDiv.append('div').text(lines[i])\n\t\t\t\t}\n\t\t\t})\n\t\t\t.on('mouseout', () => {\n\t\t\t\ttip.hide()\n\t\t\t})\n\t\tif (onRegionClick) {\n\t\t\touterG.on('click', (event: MouseEvent) => onRegionClick(code, event))\n\t\t}\n\t}\n\n\t// PASS 2: place labels. Inline when the region is roomy enough to host the\n\t// full label rect; callout with leader line when not (AM, SN).\n\tconst fontSize = 46\n\tfor (const r of rendered) {\n\t\tconst labelW = r.displayLabel.length * fontSize * 0.62\n\t\tconst labelH = fontSize\n\t\tconst labelHalfDiag = Math.hypot(labelW / 2, labelH / 2)\n\n\t\tconst others = rendered.filter(rr => rr !== r)\n\t\tconst regionRoomy = r.bboxW * r.bboxH > labelW * labelH * 1.5\n\t\tconst inlinePoint = regionRoomy ? findInlineLabelSpot(r, labelW, labelH, others) : null\n\t\tconst fitsInside = !!inlinePoint\n\n\t\tlet labelX = inlinePoint ? inlinePoint.x : r.vx\n\t\tlet labelY = inlinePoint ? inlinePoint.y : r.vy\n\n\t\tif (!fitsInside) {\n\t\t\tif (!r.dimmed) r.pathSel.attr('opacity', 1)\n\t\t\t// White halo behind the colored path, inside the same transformed group\n\t\t\tr.innerG\n\t\t\t\t.insert('path', ':first-child')\n\t\t\t\t.attr('d', r.d)\n\t\t\t\t.attr('fill', '#fff')\n\t\t\t\t.attr('stroke', '#fff')\n\t\t\t\t.attr('stroke-width', 18)\n\t\t\t\t.attr('stroke-linejoin', 'round')\n\n\t\t\tconst offset = Math.max(r.bboxW, r.bboxH) / 2 + labelHalfDiag * 1.6\n\t\t\tconst placed = findClearOffset(r.vx, r.vy, offset, labelW, labelH, others, viewBoxW / 2, viewBoxH / 2)\n\t\t\tlabelX = placed.x\n\t\t\tlabelY = placed.y\n\n\t\t\tr.outerG\n\t\t\t\t.append('line')\n\t\t\t\t.attr('x1', r.vx)\n\t\t\t\t.attr('y1', r.vy)\n\t\t\t\t.attr('x2', labelX - placed.dx * labelHalfDiag * 0.9)\n\t\t\t\t.attr('y2', labelY - placed.dy * labelHalfDiag * 0.9)\n\t\t\t\t.attr('stroke', '#333')\n\t\t\t\t.attr('stroke-width', 2)\n\t\t}\n\n\t\tr.outerG\n\t\t\t.append('text')\n\t\t\t.attr('x', labelX)\n\t\t\t.attr('y', labelY)\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.attr('dominant-baseline', 'central')\n\t\t\t.attr('font-size', `${fontSize}px`)\n\t\t\t.attr('font-weight', 'bold')\n\t\t\t.attr('fill', '#333')\n\t\t\t.attr('paint-order', 'stroke')\n\t\t\t.attr('stroke', '#fff')\n\t\t\t.attr('stroke-width', 6)\n\t\t\t.text(r.displayLabel)\n\t}\n\n\treturn svg.node() as SVGSVGElement\n}\n"],
-  "mappings": 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-  "names": ["dx", "dy"]
-}

package/dist/chunk-WFOC4W5A.js

@@ -1,55 +0,0 @@
-import {
-  colorinframe
-} from "./chunk-7RX5UEF3.js";
-import {
-  IN_frame,
-  OUT_frame
-} from "./chunk-S5SOLLGM.js";
-
-// src/spliceevent.phrase.js
-function spliceevent_phrase_default(evt) {
-  const htmls = [];
-  if (evt.isaltexon || evt.isskipexon) {
-    const exonstart = Math.min(...evt.skippedexon);
-    const exonstop = Math.max(...evt.skippedexon);
-    htmls.push(
-      '<div style="display:inline-block">' + (exonstart == exonstop ? "exon " + (exonstart + 1) : "exons " + (exonstart + 1) + "-" + (exonstop + 1)) + " " + (evt.isaltexon ? "alternative usage" : "skipping") + "</div>"
-    );
-    if (evt.isaltexon) {
-      htmls.push(
-        "<div class=sja_tinylogo_body>" + evt.gmB.isoform + ", " + evt.gmA.isoform + "</div><div class=sja_tinylogo_head>ISOFORMS</div>"
-      );
-    } else {
-      htmls.push("<div class=sja_tinylogo_body>" + evt.gm.isoform + "</div><div class=sja_tinylogo_head>ISOFORM</div>");
-    }
-    if (evt.junctionB.data) {
-      htmls.push(
-        "<div class=sja_tinylogo_body>" + evt.junctionB.data.length + "</div><div class=sja_tinylogo_head>SAMPLE" + (evt.junctionB.data.length > 1 ? "S" : "") + "</div>"
-      );
-    }
-    htmls.push("<div class=sja_tinylogo_body>" + evt.percentage + " %</div><div class=sja_tinylogo_head>PERCENT</div>");
-    if (evt.framenocheck) {
-      if (evt.utr3) {
-        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">3' UTR</div>`);
-      } else if (evt.utr5) {
-        htmls.push(`<div class=sja_tinylogo_body style="background-color:#ededed">5' UTR</div>`);
-      }
-    } else if (evt.frame == IN_frame) {
-      htmls.push(
-        '<div class=sja_tinylogo_body style="background-color:' + colorinframe + ';color:white">IN</div><div class=sja_tinylogo_head>FRAME</div>'
-      );
-    } else if (evt.frame == OUT_frame) {
-      htmls.push("<div class=sja_tinylogo_body>OUT</div><div class=sja_tinylogo_head>FRAME</div>");
-    } else {
-      htmls.push("<div class=sja_tinylogo_body>?</div><div class=sja_tinylogo_head>FRAME</div>");
-    }
-  } else {
-    return "unknown event type!!";
-  }
-  return htmls.join(" ");
-}
-
-export {
-  spliceevent_phrase_default
-};
-//# sourceMappingURL=chunk-WFOC4W5A.js.map