@sjcrh/proteinpaint-client 2.204.0 → 2.206.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-5OYM4MXA.js +1367 -0
- package/dist/AggMatrixInput-4VTI4Y6E.js +277 -0
- package/dist/AggregateMatrix-K7SGNO63.js +41 -0
- package/dist/AppHeader-WU6TO2OZ.js +830 -0
- package/dist/BoxPlot-OW7U3XTF.js +1211 -0
- package/dist/CorrelationVolcano-B3JTTZHF.js +614 -0
- package/dist/Cuminc-AJEXWRU2.js +1219 -0
- package/dist/DE-2J7DSRPC.js +89 -0
- package/dist/DE-2J7DSRPC.js.map +7 -0
- package/dist/DEinput-I7JWNOSD.js +499 -0
- package/dist/DEinput-I7JWNOSD.js.map +7 -0
- package/dist/DM-NQ46YPGF.js +90 -0
- package/dist/DM-NQ46YPGF.js.map +7 -0
- package/dist/DifferentialAnalysis-BFCQBX5J.js +237 -0
- package/dist/Disco-ZJLVQRTC.js +3389 -0
- package/dist/Disco.UI-AEDACXW2.js +243 -0
- package/dist/DmrPlot-QMRXAOM3.js +637 -0
- package/dist/GB-MFU2UJ22.js +1391 -0
- package/dist/GSEA-E3NHU22A.js +851 -0
- package/dist/GeneExpInput-MIUNSOPY.js +362 -0
- package/dist/Geomap-HAJG3STN.js +84 -0
- package/dist/HicApp-ECFFIRWI.js +2245 -0
- package/dist/IDCViewer-TNSD3U2V.js +10812 -0
- package/dist/NumBinaryEditor-CNBGZ6WY.js +279 -0
- package/dist/NumBinaryEditor.unit.spec-SKFDALF3.js +312 -0
- package/dist/NumContEditor-7ID2U7JL.js +105 -0
- package/dist/NumContEditor.unit.spec-XHSQSAWK.js +164 -0
- package/dist/NumCustomBinEditor-PAIPRJPO.js +33 -0
- package/dist/NumCustomBinEditor.unit.spec-QYVZMMHV.js +397 -0
- package/dist/NumDiscreteEditor-K2NZZQTH.js +170 -0
- package/dist/NumDiscreteEditor.unit.spec-3CG5VEQL.js +233 -0
- package/dist/NumRegularBinEditor-EOVZ22TP.js +33 -0
- package/dist/NumRegularBinEditor.unit.spec-FHTVH5FH.js +278 -0
- package/dist/NumSplineEditor-N3REMJUC.js +210 -0
- package/dist/NumSplineEditor.unit.spec-DZCP35GL.js +224 -0
- package/dist/NumericDensity-42MWVI2S.js +33 -0
- package/dist/NumericDensity.unit.spec-T2HHSQON.js +418 -0
- package/dist/NumericHandler-5XU3SSPD.js +34 -0
- package/dist/NumericHandler.unit.spec-3F23KSAQ.js +214 -0
- package/dist/ProteomeInput-UN2BUNRO.js +388 -0
- package/dist/Regression-HWLJENA5.js +1416 -0
- package/dist/RunChart2-YO55WE4M.js +749 -0
- package/dist/SC-LEDJ4DQR.js +1107 -0
- package/dist/Violin-E6PDJZ2B.js +1082 -0
- package/dist/Volcano-XJTBWYUK.js +1649 -0
- package/dist/Volcano-XJTBWYUK.js.map +7 -0
- package/dist/Wsi-S675CYTW.js +431 -0
- package/dist/adSandbox-ZJQ5ZW2T.js +33 -0
- package/dist/animatedBubbleChart-LRUS7W36.js +547 -0
- package/dist/app-7Q3QIBU4.js +32 -0
- package/dist/app-PKSI4MV5.js +42 -0
- package/dist/app.js +17 -17
- package/dist/bam-X5JH5ZT7.js +876 -0
- package/dist/barchart-UT6J4L2N.js +42 -0
- package/dist/barchart2-ZG5QJO3C.js +309 -0
- package/dist/block-TC466NGW.js +6249 -0
- package/dist/block.init-CIBNSYAC.js +33 -0
- package/dist/block.mds.expressionrank-EY5PCQCK.js +354 -0
- package/dist/block.mds.geneboxplot-R6AOMHO5.js +823 -0
- package/dist/block.mds.junction-JMV6FNYC.js +1539 -0
- package/dist/block.mds.svcnv-IHTV3QYG.js +6796 -0
- package/dist/block.svg-NTFLVQAQ.js +159 -0
- package/dist/block.tk.aicheck-FYPL32Y4.js +278 -0
- package/dist/block.tk.ase-FWCB6VBO.js +360 -0
- package/dist/block.tk.bam-Q5UFUABN.js +1901 -0
- package/dist/block.tk.bedgraphdot-KBI3GFDM.js +379 -0
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- package/dist/block.tk.hicstraw-MQBH3YAJ.js +818 -0
- package/dist/block.tk.junction-EBTVXLJH.js +2358 -0
- package/dist/block.tk.junction.textmatrixui-ETYLCP2O.js +194 -0
- package/dist/block.tk.ld-NLB6L6WQ.js +94 -0
- package/dist/block.tk.menu-PJLCOXVJ.js +1024 -0
- package/dist/block.tk.pgv-JOIQVWL2.js +938 -0
- package/dist/brainImaging-SPRC3QFB.js +515 -0
- package/dist/brainRegions-LGQGRWG7.js +217 -0
- package/dist/brainRegions-LGQGRWG7.js.map +7 -0
- package/dist/bubbleHeatmap-CFTZ5RXH.js +378 -0
- package/dist/cellTypeBubbleHeatmap-DXPLFT5U.js +278 -0
- package/dist/chunk-2BQ572SL.js +102 -0
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- package/dist/chunk-2POQWEK6.js +134 -0
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- package/dist/chunk-WTAPOH2W.js.map +7 -0
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- package/dist/cohort-FZNMFWOX.js +70 -0
- package/dist/condition-AJJLFCBQ.js +327 -0
- package/dist/controls-SZOLV37V.js +34 -0
- package/dist/controls.config-CVP75WFA.js +34 -0
- package/dist/correlation-UFJFQHQ3.js +95 -0
- package/dist/customdata.inputui-HOVA4A6O.js +284 -0
- package/dist/dataDownload-VTUG4IOK.js +329 -0
- package/dist/databrowser.ui-O5S4Y4EK.js +425 -0
- package/dist/dictionary-L2UNNNP7.js +113 -0
- package/dist/dnaMethylation-B4SWZI4O.js +33 -0
- package/dist/dnaMethylation.integration.spec-ANJAMNYJ.js +198 -0
- package/dist/dofetch-F5XSHQIS.js +48 -0
- package/dist/e2pca-66ARIMKL.js +344 -0
- package/dist/ep-OFGJYVUY.js +1249 -0
- package/dist/expclust.gdc.spec-22RXQTTP.js +302 -0
- package/dist/facet-GVZQ3RPN.js +519 -0
- package/dist/gb-HEPGVYEK.js +81 -0
- package/dist/geneExpClustering-3NU2U422.js +244 -0
- package/dist/geneExpression-FXQ4L2J2.js +310 -0
- package/dist/geneExpression-XYVYJJA5.js +33 -0
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- package/dist/geneORA-5M2JSDMF.js +273 -0
- package/dist/geneRanking-TP3R3CS3.js +548 -0
- package/dist/geneVariant-232EYUFJ.js +36 -0
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- package/dist/geneset-N42FIVA6.js +203 -0
- package/dist/genomeBrowser.spec-5HKQKLRU.js +276 -0
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- /package/dist/{plot.disco-F25Z3FQL.js.map → plot.disco-BN5RNZ6Q.js.map} +0 -0
- /package/dist/{plot.ssgq-CRRK26RS.js.map → plot.ssgq-N2HTOIY3.js.map} +0 -0
- /package/dist/{plot.vaf2cov-WCNPZKXK.js.map → plot.vaf2cov-6AOHRUQ2.js.map} +0 -0
- /package/dist/{polar2-MH5GPXHJ.js.map → polar2-TC5OEJRE.js.map} +0 -0
- /package/dist/{profileForms-2YX2OYDI.js.map → profileForms-5WV2TSBB.js.map} +0 -0
- /package/dist/{profilePlot-FUTMZ2PP.js.map → profilePlot-OJLLW44P.js.map} +0 -0
- /package/dist/{pseudbulk.unit.spec-S7FDL3IX.js.map → pseudbulk.unit.spec-RAYRGN6C.js.map} +0 -0
- /package/dist/{pseudobulk-A3LB23N2.js.map → pseudobulk-ADHAYVSQ.js.map} +0 -0
- /package/dist/{qualitative-5VJRMF4S.js.map → qualitative-JXEI3IYC.js.map} +0 -0
- /package/dist/{radar2-2SJX4ZXN.js.map → radar2-BWTKSTT3.js.map} +0 -0
- /package/dist/{radarFacility2-7FPO34JS.js.map → radarFacility2-WIRSKTDG.js.map} +0 -0
- /package/dist/{rememberedGvQ.unit.spec-WOQVPQ75.js.map → rememberedGvQ.unit.spec-N43O4YTF.js.map} +0 -0
- /package/dist/{render-ZLA2RRBP.js.map → render-J7WOYBOL.js.map} +0 -0
- /package/dist/{report-VCE6RILD.js.map → report-DRPCXX2B.js.map} +0 -0
- /package/dist/{sampleView-QYTX4OLI.js.map → sampleView-BV6BQGGQ.js.map} +0 -0
- /package/dist/{samplelst-7NGH3SUM.js.map → samplelst-ZD63EYO7.js.map} +0 -0
- /package/dist/{samplematrix-SNAR6IBB.js.map → samplematrix-ZZ3DVELU.js.map} +0 -0
- /package/dist/{sc-2JETYAI4.js.map → sc-MUI43YTB.js.map} +0 -0
- /package/dist/{scatter-GHBQM2RR.js.map → scatter-7B44HTKN.js.map} +0 -0
- /package/dist/{scatter-D7VZOBEE.js.map → scatter-UEDVIE4Y.js.map} +0 -0
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- /package/dist/{singleCellCellType-XHLOJVVC.js.map → singleCellCellType-Z7OXK7PI.js.map} +0 -0
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- /package/dist/{singleCellGeneExpression.unit.spec-Z2KSVCIG.js.map → singleCellGeneExpression.unit.spec-67AAWZTG.js.map} +0 -0
- /package/dist/{singleCellPlot-4462CQHF.js.map → singleCellPlot-TXPYQLSH.js.map} +0 -0
- /package/dist/{singlecell-SO3B5KJ7.js.map → singlecell-22OG6HNI.js.map} +0 -0
- /package/dist/{singlecell-CDUQ6MTO.js.map → singlecell-7TBALI2S.js.map} +0 -0
- /package/dist/{snp-YE2MXKJO.js.map → snp-3U2G3Z57.js.map} +0 -0
- /package/dist/{snp.unit.spec-MT57TGGQ.js.map → snp.unit.spec-BMBBUBYD.js.map} +0 -0
- /package/dist/{snplocus-RSNKWY63.js.map → snplocus-SSVZDIQV.js.map} +0 -0
- /package/dist/{spliceevent.a53ss.diagram-6N6YGYV7.js.map → spliceevent.a53ss.diagram-FK7CN4AU.js.map} +0 -0
- /package/dist/{spliceevent.exonskip.diagram-LMNUS4XV.js.map → spliceevent.exonskip.diagram-EFLGV3O4.js.map} +0 -0
- /package/dist/{spliceevent.noeventdiagram-LTBH4YD5.js.map → spliceevent.noeventdiagram-2DYO7CCZ.js.map} +0 -0
- /package/dist/{ssGSEA-DPK4PDM2.js.map → ssGSEA-52LWBQJP.js.map} +0 -0
- /package/dist/{ssGSEA.unit.spec-K2SA7ME7.js.map → ssGSEA.unit.spec-3JV6WHUQ.js.map} +0 -0
- /package/dist/{stattable-PR47XT4F.js.map → stattable-RLMYQ4G6.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-YZEMDLES.js.map → summarizeCnvGeneexp-QPRYAKC2.js.map} +0 -0
- /package/dist/{summarizeGeneexpSurvival-3TXV6ZNI.js.map → summarizeGeneexpSurvival-RWVQXEKB.js.map} +0 -0
- /package/dist/{summarizeMutationCnv-EBWSEHWJ.js.map → summarizeMutationCnv-DW5F6NUJ.js.map} +0 -0
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- /package/dist/{summarizeMutationSurvival-MR4AOMNS.js.map → summarizeMutationSurvival-4UKB4EVO.js.map} +0 -0
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- /package/dist/{summary.integration.spec-Y6JLH7NH.js.map → summary.integration.spec-5GLJJZNM.js.map} +0 -0
- /package/dist/{summaryInput-NWT2DXWU.js.map → summaryInput-4IJGKW4P.js.map} +0 -0
- /package/dist/{sunburst-266MA7E2.js.map → sunburst-G7DGATWP.js.map} +0 -0
- /package/dist/{survival-CAZCIY2N.js.map → survival-MKNABJPU.js.map} +0 -0
- /package/dist/{svgraph-OFUESREM.js.map → svgraph-VB7JWWR5.js.map} +0 -0
- /package/dist/{svmr-PVH42MY4.js.map → svmr-VLQIO2U5.js.map} +0 -0
- /package/dist/{table-C2SICFZV.js.map → table-EAXMDWOY.js.map} +0 -0
- /package/dist/{termCollection-TGYDI7NP.js.map → termCollection-5LG7ICQY.js.map} +0 -0
- /package/dist/{termCollection-H4RL5WJG.js.map → termCollection-SB6MWLFK.js.map} +0 -0
- /package/dist/{termCollection.unit.spec-JSALS7GL.js.map → termCollection.unit.spec-H5ITGTR3.js.map} +0 -0
- /package/dist/{termCollectionFractionSelection-YJVDNV4I.js.map → termCollectionFractionSelection-2XZSTDCQ.js.map} +0 -0
- /package/dist/{termCollectionFractionSelection.unit.spec-4GM7P4ZW.js.map → termCollectionFractionSelection.unit.spec-BIO7V6KA.js.map} +0 -0
- /package/dist/{tk-RZCPSHJG.js.map → tk-TRWYZLQ2.js.map} +0 -0
- /package/dist/{tk-SNTRA5CC.js.map → tk-VZI5HNSX.js.map} +0 -0
- /package/dist/{tp.ui-2W4K3XH6.js.map → tp.ui-J5SNNAT3.js.map} +0 -0
- /package/dist/{tvs.dt-GIPVC3R6.js.map → tvs.dt-6YHFJPER.js.map} +0 -0
- /package/dist/{tvs.dtcnv.categorical-TEYAS4OU.js.map → tvs.dtcnv.categorical-WTIE63GM.js.map} +0 -0
- /package/dist/{tvs.dtcnv.continuous-VQRATYPZ.js.map → tvs.dtcnv.continuous-OCMKGTF5.js.map} +0 -0
- /package/dist/{tvs.dtfusion-P2KF5Z4H.js.map → tvs.dtfusion-CA23UNM3.js.map} +0 -0
- /package/dist/{tvs.dtitd-TM6UROSH.js.map → tvs.dtitd-VSYMR3OD.js.map} +0 -0
- /package/dist/{tvs.dtsnvindel-FZXC23NF.js.map → tvs.dtsnvindel-YBNO3CYF.js.map} +0 -0
- /package/dist/{tvs.dtsv-Y5QEJPYG.js.map → tvs.dtsv-S743GBB5.js.map} +0 -0
- /package/dist/{tvs.numeric-3UXW4JHJ.js.map → tvs.numeric-22AHXO5K.js.map} +0 -0
- /package/dist/{tvs.samplelst-MLAFPFER.js.map → tvs.samplelst-XAJO4EM6.js.map} +0 -0
- /package/dist/{tvs.termCollection-ZQQDKESH.js.map → tvs.termCollection-QOVJGAUC.js.map} +0 -0
- /package/dist/{vocabulary-JRUZPHMG.js.map → vocabulary-6EADTHP3.js.map} +0 -0
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import {
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DownloadMenu,
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PlotBase,
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controlsInit,
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fillTermWrapper,
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fillTwLst,
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getCategoricalTermFilter,
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getCombinedTermFilter
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importPlot
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icons
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select_default
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// plots/profile/profilePlot.ts
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var orderedIncomes = ["Low income", "Lower middle income", "Upper middle income", "High income"];
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var orderedVolumes = [
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"Small (1-25 annual newly diagnoses)",
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"Very large (>120 annual newly diagnoses)"
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var profilePlot = class extends PlotBase {
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constructor(opts, type) {
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getState(appState) {
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site,
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user,
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async main() {
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filters[tw.term.id] = getCategoricalTermFilter(this.config.filterTWs, this.settings, tw);
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}
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this.filteredTermValues = await this.vocabApi.filterTermValues({
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terms: this.config.filterTWs,
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filters,
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facilityTW: this.config.facilityTW,
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// safe to pass because the backend code will still compare terms[] with the the dataset's hiddenTermIds,
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186
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-
// it only affects what will be included in the aggregation and does not disable user access authentication
|
|
187
|
-
filterByUserSites: this.settings.filterByUserSites,
|
|
188
|
-
showAll: true
|
|
189
|
-
});
|
|
190
|
-
const regions = this.filteredTermValues[this.config.regionTW.id];
|
|
191
|
-
const sjgRegions = this.filteredTermValues[this.config.sjgRegionTW.id];
|
|
192
|
-
const countries = this.filteredTermValues[this.config.countryTW.id];
|
|
193
|
-
const incomes = this.filteredTermValues[this.config.incomeTW.id];
|
|
194
|
-
const teachingStates = this.filteredTermValues[this.config.teachingStatusTW.id];
|
|
195
|
-
const referralStates = this.filteredTermValues[this.config.referralStatusTW.id];
|
|
196
|
-
const fundingSources = this.filteredTermValues[this.config.fundingSourceTW.id];
|
|
197
|
-
const hospitalVolumes = this.filteredTermValues[this.config.hospitalVolumeTW.id];
|
|
198
|
-
const yearsOfImplementation = this.filteredTermValues[this.config.yearOfImplementationTW.id];
|
|
199
|
-
incomes.sort((elem1, elem2) => {
|
|
200
|
-
const i1 = orderedIncomes.indexOf(elem1.value);
|
|
201
|
-
const i2 = orderedIncomes.indexOf(elem2.value);
|
|
202
|
-
if (i1 < i2) return -1;
|
|
203
|
-
return 1;
|
|
204
|
-
});
|
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205
|
-
hospitalVolumes.sort((elem1, elem2) => {
|
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206
|
-
const i1 = orderedVolumes.indexOf(elem1.value);
|
|
207
|
-
const i2 = orderedVolumes.indexOf(elem2.value);
|
|
208
|
-
if (i1 < i2) return -1;
|
|
209
|
-
return 1;
|
|
210
|
-
});
|
|
211
|
-
const types = this.filteredTermValues[this.config.typeTW.id];
|
|
212
|
-
const isAggregate = this.isAggregate();
|
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213
|
-
if (!this.settings[this.config.facilityTW?.term?.id] && this.state.sites?.length == 1 && !isAggregate) {
|
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214
|
-
this.settings[this.config.facilityTW?.term?.id] = [this.state.sites[0]];
|
|
215
|
-
}
|
|
216
|
-
this.filter = this.config.filter || this.getFilter();
|
|
217
|
-
if (this.type == "profileForms")
|
|
218
|
-
this.data = await this.vocabApi.getProfileFormScores({
|
|
219
|
-
scoreTerms: this.scoreTerms,
|
|
220
|
-
scScoreTerms: this.scScoreTerms,
|
|
221
|
-
filter: this.filter,
|
|
222
|
-
facilityTW: this.config.facilityTW,
|
|
223
|
-
filterByUserSites: this.settings.filterByUserSites
|
|
224
|
-
});
|
|
225
|
-
else if (this.type == "profileRadarFacility2")
|
|
226
|
-
this.data = await this.fetchRadarFacility2Scores();
|
|
227
|
-
if ((this.type == "profileForms" || this.type == "profileRadarFacility2") && this.data && "error" in this.data)
|
|
228
|
-
throw this.data.error;
|
|
229
|
-
this.sites = this.filteredTermValues[this.config.facilityTW.id]?.filter((s) => !s.disabled && s.value);
|
|
230
|
-
if (this.settings[this.config.facilityTW?.term?.id])
|
|
231
|
-
for (const site of this.settings[this.config.facilityTW?.term?.id]) {
|
|
232
|
-
const siteOption = this.sites.find((s) => s.value == site);
|
|
233
|
-
if (siteOption) siteOption.selected = true;
|
|
234
|
-
}
|
|
235
|
-
const chartType = this.type;
|
|
236
|
-
this.dom.controlsDiv.selectAll("*").remove();
|
|
237
|
-
const inputs = [];
|
|
238
|
-
const userSitesFilterInput = {
|
|
239
|
-
label: "Use accessible sites only",
|
|
240
|
-
boxLabel: "",
|
|
241
|
-
type: "checkbox",
|
|
242
|
-
chartType,
|
|
243
|
-
settingsKey: "filterByUserSites"
|
|
244
|
-
};
|
|
245
|
-
if (this.state.sites?.length == 1 && !isRadarFacility) {
|
|
246
|
-
const dataInput = {
|
|
247
|
-
label: "Data",
|
|
248
|
-
type: "radio",
|
|
249
|
-
chartType,
|
|
250
|
-
settingsKey: "isAggregate",
|
|
251
|
-
styles: { display: "inline-block" },
|
|
252
|
-
options: [
|
|
253
|
-
{ label: this.state.site, value: false },
|
|
254
|
-
{ label: "Aggregate", value: true }
|
|
255
|
-
],
|
|
256
|
-
callback: (isAggregate2) => {
|
|
257
|
-
this.settings.isAggregate = isAggregate2;
|
|
258
|
-
const id = this.sites.find((s) => s.value == this.state.site)?.value;
|
|
259
|
-
const value = isAggregate2 ? [] : [id];
|
|
260
|
-
this.setFilterValue(this.config.facilityTW.term.id, value);
|
|
261
|
-
}
|
|
262
|
-
};
|
|
263
|
-
inputs.push(dataInput);
|
|
264
|
-
}
|
|
265
|
-
if (isAggregate || isRadarFacility) {
|
|
266
|
-
inputs.push(
|
|
267
|
-
...[
|
|
268
|
-
{
|
|
269
|
-
label: "WHO Region",
|
|
270
|
-
type: "dropdown",
|
|
271
|
-
chartType,
|
|
272
|
-
settingsKey: this.config.regionTW.term.id,
|
|
273
|
-
options: regions,
|
|
274
|
-
callback: (value) => this.setFilterValue(this.config.regionTW.term.id, value)
|
|
275
|
-
},
|
|
276
|
-
{
|
|
277
|
-
label: "SJG Region",
|
|
278
|
-
type: "dropdown",
|
|
279
|
-
chartType,
|
|
280
|
-
settingsKey: this.config.sjgRegionTW.term.id,
|
|
281
|
-
options: sjgRegions,
|
|
282
|
-
callback: (value) => this.setFilterValue(this.config.sjgRegionTW.term.id, value)
|
|
283
|
-
},
|
|
284
|
-
{
|
|
285
|
-
label: "Country",
|
|
286
|
-
type: "dropdown",
|
|
287
|
-
chartType,
|
|
288
|
-
settingsKey: this.config.countryTW.term.id,
|
|
289
|
-
options: countries,
|
|
290
|
-
callback: (value) => this.setFilterValue(this.config.countryTW.term.id, value)
|
|
291
|
-
},
|
|
292
|
-
{
|
|
293
|
-
label: "Income group",
|
|
294
|
-
type: "dropdown",
|
|
295
|
-
chartType,
|
|
296
|
-
settingsKey: this.config.incomeTW.term.id,
|
|
297
|
-
options: incomes,
|
|
298
|
-
callback: (value) => this.setFilterValue(this.config.incomeTW.term.id, value)
|
|
299
|
-
},
|
|
300
|
-
{
|
|
301
|
-
label: "Facility type",
|
|
302
|
-
type: "dropdown",
|
|
303
|
-
chartType,
|
|
304
|
-
settingsKey: this.config.typeTW.term.id,
|
|
305
|
-
options: types,
|
|
306
|
-
callback: (value) => this.setFilterValue(this.config.typeTW.term.id, value)
|
|
307
|
-
},
|
|
308
|
-
{
|
|
309
|
-
label: this.config.teachingStatusTW.term.name,
|
|
310
|
-
type: "dropdown",
|
|
311
|
-
chartType,
|
|
312
|
-
settingsKey: this.config.teachingStatusTW.term.id,
|
|
313
|
-
options: teachingStates,
|
|
314
|
-
callback: (value) => this.setFilterValue(this.config.teachingStatusTW.term.id, value)
|
|
315
|
-
},
|
|
316
|
-
{
|
|
317
|
-
label: this.config.referralStatusTW.term.name,
|
|
318
|
-
type: "dropdown",
|
|
319
|
-
chartType,
|
|
320
|
-
settingsKey: this.config.referralStatusTW.term.id,
|
|
321
|
-
options: referralStates,
|
|
322
|
-
callback: (value) => this.setFilterValue(this.config.referralStatusTW.term.id, value)
|
|
323
|
-
},
|
|
324
|
-
{
|
|
325
|
-
label: this.config.fundingSourceTW.term.name,
|
|
326
|
-
type: "dropdown",
|
|
327
|
-
chartType,
|
|
328
|
-
settingsKey: this.config.fundingSourceTW.term.id,
|
|
329
|
-
options: fundingSources,
|
|
330
|
-
callback: (value) => this.setFilterValue(this.config.fundingSourceTW.term.id, value)
|
|
331
|
-
},
|
|
332
|
-
{
|
|
333
|
-
label: this.config.hospitalVolumeTW.term.name,
|
|
334
|
-
type: "dropdown",
|
|
335
|
-
chartType,
|
|
336
|
-
settingsKey: this.config.hospitalVolumeTW.term.id,
|
|
337
|
-
options: hospitalVolumes,
|
|
338
|
-
callback: (value) => this.setFilterValue(this.config.hospitalVolumeTW.term.id, value)
|
|
339
|
-
},
|
|
340
|
-
{
|
|
341
|
-
label: this.config.yearOfImplementationTW.term.name,
|
|
342
|
-
type: "dropdown",
|
|
343
|
-
chartType,
|
|
344
|
-
settingsKey: this.config.yearOfImplementationTW.term.id,
|
|
345
|
-
options: yearsOfImplementation,
|
|
346
|
-
callback: (value) => this.setFilterValue(this.config.yearOfImplementationTW.term.id, value)
|
|
347
|
-
}
|
|
348
|
-
]
|
|
349
|
-
);
|
|
350
|
-
}
|
|
351
|
-
if (this.state.logged) {
|
|
352
|
-
if (isAggregate && this.sites.length > 1) {
|
|
353
|
-
const sitesInput = {
|
|
354
|
-
label: "Sites",
|
|
355
|
-
type: "dropdown",
|
|
356
|
-
chartType,
|
|
357
|
-
options: this.sites,
|
|
358
|
-
multiple: true,
|
|
359
|
-
callback: (values) => this.setFilterValue(this.config.facilityTW.term.id, values)
|
|
360
|
-
};
|
|
361
|
-
inputs.push(sitesInput);
|
|
362
|
-
if (this.state.user != "admin") inputs.unshift(userSitesFilterInput);
|
|
363
|
-
}
|
|
364
|
-
if (isRadarFacility) {
|
|
365
|
-
if (this.sampleData?.sites?.length) {
|
|
366
|
-
const facilitySites = this.sampleData.sites;
|
|
367
|
-
const facilitySite = this.settings.facilitySite ? facilitySites.find((s) => s.value == this.settings.facilitySite) : facilitySites[0];
|
|
368
|
-
if (!facilitySite)
|
|
369
|
-
throw new Error(`Access to ${this.settings.facilitySite} facility not allowed`);
|
|
370
|
-
facilitySite.selected = true;
|
|
371
|
-
inputs.unshift({
|
|
372
|
-
label: "Facility site",
|
|
373
|
-
type: "dropdown",
|
|
374
|
-
chartType,
|
|
375
|
-
options: facilitySites,
|
|
376
|
-
callback: (value) => {
|
|
377
|
-
this.setFacilitySite(value);
|
|
378
|
-
}
|
|
379
|
-
});
|
|
380
|
-
}
|
|
381
|
-
}
|
|
382
|
-
}
|
|
383
|
-
inputs.unshift(...additionalInputs);
|
|
384
|
-
this.components.controls = await controlsInit({
|
|
385
|
-
app: this.app,
|
|
386
|
-
id: this.id,
|
|
387
|
-
holder: this.dom.controlsDiv,
|
|
388
|
-
inputs,
|
|
389
|
-
title: "Filters"
|
|
390
|
-
});
|
|
391
|
-
this.components.controls.on(`downloadClick.${chartType}`, (event) => this.download(event));
|
|
392
|
-
this.components.controls.on(`helpClick.${chartType}`, () => {
|
|
393
|
-
const activeCohort = this.state.activeCohort;
|
|
394
|
-
let link;
|
|
395
|
-
if (activeCohort == ABBREV_COHORT) {
|
|
396
|
-
if (chartType == "profileBarchart2")
|
|
397
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/bar-graph-abbr-profiledash.pdf";
|
|
398
|
-
else if (chartType == "profilePolar2")
|
|
399
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/polar-graph-abbr-profiledash.pdf";
|
|
400
|
-
else if (chartType.startsWith("profileRadar"))
|
|
401
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/radar-abbr-profiledash.pdf";
|
|
402
|
-
} else if (activeCohort == FULL_COHORT) {
|
|
403
|
-
if (chartType == "profileBarchart2")
|
|
404
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/bar-graph-full-profiledash.pdf";
|
|
405
|
-
else if (chartType == "profilePolar2")
|
|
406
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/polar-graph-full-profiledash.pdf";
|
|
407
|
-
else if (chartType.startsWith("profileRadar"))
|
|
408
|
-
link = "https://global.stjude.org/content/dam/global/en-us/documents/no-index/radar-full-profiledash.pdf";
|
|
409
|
-
}
|
|
410
|
-
if (link) window.open(link);
|
|
411
|
-
});
|
|
412
|
-
this.filtersCount = 0;
|
|
413
|
-
} catch (e) {
|
|
414
|
-
console.log(e);
|
|
415
|
-
throw e;
|
|
416
|
-
}
|
|
417
|
-
}
|
|
418
|
-
setFilterValue(key, value) {
|
|
419
|
-
const config = this.config;
|
|
420
|
-
this.settings[key] = value;
|
|
421
|
-
config.filter = this.getFilter();
|
|
422
|
-
this.app.dispatch({ type: "plot_edit", id: this.id, config: this.config });
|
|
423
|
-
}
|
|
424
|
-
getFilterWithSettings(settings) {
|
|
425
|
-
let filter = getCategoricalTermFilter(this.config.filterTWs, settings, null);
|
|
426
|
-
filter = getCombinedTermFilter(this.state, filter);
|
|
427
|
-
return filter.filter;
|
|
428
|
-
}
|
|
429
|
-
getFilter() {
|
|
430
|
-
let filter = getCategoricalTermFilter(this.config.filterTWs, this.settings, null);
|
|
431
|
-
filter = getCombinedTermFilter(this.state, filter);
|
|
432
|
-
return filter.filter;
|
|
433
|
-
}
|
|
434
|
-
clearFiltersExcept(ids) {
|
|
435
|
-
for (const tw of this.config.filterTWs) if (!ids.includes(tw.term.id)) this.settings[tw.term.id] = "";
|
|
436
|
-
}
|
|
437
|
-
setFacilitySite(site) {
|
|
438
|
-
this.settings.facilitySite = site;
|
|
439
|
-
this.app.dispatch({ type: "plot_edit", id: this.id, config: this.config });
|
|
440
|
-
}
|
|
441
|
-
hasFilterValue(value) {
|
|
442
|
-
return !!value && value.length !== 0;
|
|
443
|
-
}
|
|
444
|
-
/*
|
|
445
|
-
Rows addFilterLegend() will draw: the title plus one row per active filter. Charts that
|
|
446
|
-
stack the filter legend under the plot read this before drawing, to size the svg height.
|
|
447
|
-
*/
|
|
448
|
-
getFilterLegendRowCount() {
|
|
449
|
-
return 1 + this.config.filterTWs.filter((tw) => this.hasFilterValue(this.settings[tw.term.id])).length;
|
|
450
|
-
}
|
|
451
|
-
addFilterLegend() {
|
|
452
|
-
const hasFilters = this.config.filterTWs.some((tw) => this.settings[tw.term.id]);
|
|
453
|
-
const title = hasFilters ? "Filters" : "No filter applied";
|
|
454
|
-
this.filterG.attr("font-size", "0.9em").append("text").attr("text-anchor", "left").style("font-weight", "bold").text(`${title} (n=${this.data.n})`).attr("transform", `translate(0, -5)`);
|
|
455
|
-
for (const tw of this.config.filterTWs) this.addFilterLegendItem(tw.term.name, this.settings[tw.term.id]);
|
|
456
|
-
}
|
|
457
|
-
addFilterLegendItem(filter, value) {
|
|
458
|
-
if (!this.hasFilterValue(value)) return;
|
|
459
|
-
this.filtersCount++;
|
|
460
|
-
const isArray = Array.isArray(value);
|
|
461
|
-
let text = isArray ? value.join(", ") : value;
|
|
462
|
-
if (text.length > 40) {
|
|
463
|
-
text = text.slice(0, 40) + "...";
|
|
464
|
-
}
|
|
465
|
-
const itemG = this.filterG.append("g").attr("font-size", "0.95em");
|
|
466
|
-
const textElem = itemG.append("text").attr("transform", `translate(0, ${this.filtersCount * 22})`).attr("text-anchor", "left");
|
|
467
|
-
textElem.append("tspan").attr("font-weight", "bold").text(`${filter}: `);
|
|
468
|
-
textElem.append("tspan").text(text);
|
|
469
|
-
}
|
|
470
|
-
addEndUserImpressionNote(uiG) {
|
|
471
|
-
uiG.attr("font-size", "0.9em");
|
|
472
|
-
const textElem = uiG.append("text").attr("transform", `translate(0, 115)`);
|
|
473
|
-
textElem.append("tspan").attr("font-weight", "bold").text("End-user Impression: ");
|
|
474
|
-
textElem.append("tspan").text("It is provided by the local liaison who completed the assessment ");
|
|
475
|
-
uiG.append("text").attr("transform", `translate(0, 140)`).text("in consultation with the PHO medical director or directly by the PHO medical director.");
|
|
476
|
-
uiG.append("text").attr("transform", `translate(0, 165)`).text("The end-user was asked to rate the current status of the domains and subdomains included.");
|
|
477
|
-
}
|
|
478
|
-
addPOCNote(uiG) {
|
|
479
|
-
uiG.attr("font-size", "0.9em");
|
|
480
|
-
const textElem = uiG.append("text").attr("transform", `translate(0, 115)`);
|
|
481
|
-
textElem.append("tspan").attr("font-weight", "bold").text("Point of Care (POC) Staff: ");
|
|
482
|
-
textElem.append("tspan").text("All members of the assessment team, ");
|
|
483
|
-
uiG.append("text").attr("transform", `translate(0, 140)`).text("excluding the Site Coordinator. POC staff provide subjective information based ");
|
|
484
|
-
uiG.append("text").attr("transform", `translate(0, 165)`).text("on their experience and perception about service delivery at the PHO facility.");
|
|
485
|
-
}
|
|
486
|
-
addLegendItem(category, description, index) {
|
|
487
|
-
const text = this.legendG.append("text").attr("font-size", "0.9em").attr("transform", `translate(0, ${index * 20})`).attr("text-anchor", "left");
|
|
488
|
-
text.append("tspan").attr("font-weight", "bold").text(category);
|
|
489
|
-
text.append("tspan").text(`: ${description}`);
|
|
490
|
-
}
|
|
491
|
-
getDownloadFilename() {
|
|
492
|
-
this.downloadCount++;
|
|
493
|
-
let filename = `${this.type}${this.downloadCount}`;
|
|
494
|
-
filename = filename.split(" ").join("_");
|
|
495
|
-
return filename;
|
|
496
|
-
}
|
|
497
|
-
getPercentage(d) {
|
|
498
|
-
if (!d) return 0;
|
|
499
|
-
const score = this.data.term2Score[d.score.term.id];
|
|
500
|
-
return score;
|
|
501
|
-
}
|
|
502
|
-
async download(event) {
|
|
503
|
-
const chartImages = this.getChartImages();
|
|
504
|
-
const menu = new DownloadMenu(chartImages, this.getDownloadFilename());
|
|
505
|
-
menu.show(event.clientX, event.clientY, event.target);
|
|
506
|
-
}
|
|
507
|
-
preApiFreeze(api) {
|
|
508
|
-
api.download = this.download;
|
|
509
|
-
api.getChartImages = () => this.getChartImages();
|
|
510
|
-
}
|
|
511
|
-
getChartImages() {
|
|
512
|
-
const plots = Object.values(this.components.plots);
|
|
513
|
-
const note = "\xA9 2025 St. Jude Children\u2019s Research Hospital";
|
|
514
|
-
let name = plots.length > 0 ? "Original" : "";
|
|
515
|
-
name += ` ${note}`;
|
|
516
|
-
const charts = [{ name, svg: this.dom.svg }];
|
|
517
|
-
let i = 1;
|
|
518
|
-
for (const plot of plots) {
|
|
519
|
-
const chartImages = plot.getChartImages();
|
|
520
|
-
for (const chartImage of chartImages) {
|
|
521
|
-
const svg = chartImage.svg;
|
|
522
|
-
const name2 = chartImages.length > 1 ? `Comparison ${i}. ${chartImage.name} ${note}` : `Comparison ${chartImage.name} ${note}`;
|
|
523
|
-
charts.push({ name: name2, svg });
|
|
524
|
-
}
|
|
525
|
-
i++;
|
|
526
|
-
}
|
|
527
|
-
return charts;
|
|
528
|
-
}
|
|
529
|
-
};
|
|
530
|
-
function makeChartBtnMenu(holder, chartsInstance, chartType) {
|
|
531
|
-
const state = chartsInstance.state;
|
|
532
|
-
const key = state.activeCohort == FULL_COHORT ? "full" : "abbrev";
|
|
533
|
-
const typeConfig = state.termdbConfig?.plotConfigByCohort[key][chartType];
|
|
534
|
-
if (typeConfig.options.length == 1) {
|
|
535
|
-
createPlot(typeConfig.options[0], chartType, chartsInstance);
|
|
536
|
-
return;
|
|
537
|
-
}
|
|
538
|
-
const menuDiv = holder.append("div");
|
|
539
|
-
for (const plotConfig of typeConfig.options) {
|
|
540
|
-
menuDiv.append("div").attr("class", "sja_menuoption sja_sharp_border").text(plotConfig.title).on("click", () => {
|
|
541
|
-
createPlot(plotConfig, chartType, chartsInstance);
|
|
542
|
-
chartsInstance.dom.tip.hide();
|
|
543
|
-
});
|
|
544
|
-
}
|
|
545
|
-
function createPlot(plotConfig, chartType2, chartsInstance2) {
|
|
546
|
-
const config = structuredClone(plotConfig);
|
|
547
|
-
config.chartType = chartType2;
|
|
548
|
-
chartsInstance2.app.dispatch({
|
|
549
|
-
type: "plot_create",
|
|
550
|
-
chartType: chartType2,
|
|
551
|
-
config
|
|
552
|
-
});
|
|
553
|
-
}
|
|
554
|
-
}
|
|
555
|
-
async function getProfilePlotConfig(activeCohort, app, opts) {
|
|
556
|
-
const key = activeCohort == FULL_COHORT ? "full" : "abbrev";
|
|
557
|
-
const config = structuredClone(app.vocabApi.termdbConfig?.plotConfigByCohort[key]?.[opts.chartType]);
|
|
558
|
-
if (!config) throw `No data available for the plot ${opts.chartType} in this dataset`;
|
|
559
|
-
const cohortPreffix = activeCohort == FULL_COHORT ? "F" : "A";
|
|
560
|
-
config.facilityTW = { id: cohortPreffix + "UNIT" };
|
|
561
|
-
config.hidePlotFilter = true;
|
|
562
|
-
await fillTermWrapper(config.facilityTW, app.vocabApi);
|
|
563
|
-
await loadFilterTerms(config, activeCohort, app);
|
|
564
|
-
return config;
|
|
565
|
-
}
|
|
566
|
-
async function loadFilterTerms(config, activeCohort, app) {
|
|
567
|
-
const cohortPreffix = activeCohort == FULL_COHORT ? "F" : "A";
|
|
568
|
-
config.countryTW = { id: cohortPreffix + "country" };
|
|
569
|
-
config.regionTW = { id: cohortPreffix + "WHO_region" };
|
|
570
|
-
config.sjgRegionTW = { id: cohortPreffix + "SJG_region" };
|
|
571
|
-
config.incomeTW = { id: cohortPreffix + "Income_group" };
|
|
572
|
-
config.typeTW = { id: cohortPreffix + "FC_TypeofFacility" };
|
|
573
|
-
config.teachingStatusTW = { id: cohortPreffix + "FC_TeachingFacility" };
|
|
574
|
-
config.referralStatusTW = { id: cohortPreffix + "FC_ReferralFacility" };
|
|
575
|
-
config.fundingSourceTW = { id: cohortPreffix + "FC_FundingSrc" };
|
|
576
|
-
config.hospitalVolumeTW = { id: cohortPreffix + "PO_HospitalVolume" };
|
|
577
|
-
config.yearOfImplementationTW = { id: cohortPreffix + "Year_implementation" };
|
|
578
|
-
const filterTWs = [
|
|
579
|
-
config.facilityTW,
|
|
580
|
-
config.countryTW,
|
|
581
|
-
config.regionTW,
|
|
582
|
-
config.sjgRegionTW,
|
|
583
|
-
config.incomeTW,
|
|
584
|
-
config.typeTW,
|
|
585
|
-
config.teachingStatusTW,
|
|
586
|
-
config.referralStatusTW,
|
|
587
|
-
config.fundingSourceTW,
|
|
588
|
-
config.hospitalVolumeTW,
|
|
589
|
-
config.yearOfImplementationTW
|
|
590
|
-
];
|
|
591
|
-
await fillTwLst(filterTWs, app.vocabApi);
|
|
592
|
-
config.filterTWs = filterTWs;
|
|
593
|
-
}
|
|
594
|
-
function clearLocalFilters(plot) {
|
|
595
|
-
plot.settings = getDefaultProfilePlotSettings();
|
|
596
|
-
}
|
|
597
|
-
function getDefaultProfilePlotSettings() {
|
|
598
|
-
return {
|
|
599
|
-
isAggregate: false,
|
|
600
|
-
filterByUserSites: false
|
|
601
|
-
//if true, the aggregation will be limited to the user sites only
|
|
602
|
-
};
|
|
603
|
-
}
|
|
604
|
-
function getProfileLogin(app, cohort = FULL_COHORT) {
|
|
605
|
-
const auth = app.vocabApi.getClientAuthResult();
|
|
606
|
-
if (!auth) return { logged: false, sites: [], user: "public" };
|
|
607
|
-
const auth_info = cohort == FULL_COHORT ? auth.full : auth.abbrev;
|
|
608
|
-
const logged = auth_info?.role != "public";
|
|
609
|
-
if (!auth_info) return { logged: false, sites: [], user: "public" };
|
|
610
|
-
const user = auth_info?.role || "public";
|
|
611
|
-
const sites = user == "admin" ? null : auth_info.sites;
|
|
612
|
-
return { logged, sites, user };
|
|
613
|
-
}
|
|
614
|
-
|
|
615
|
-
export {
|
|
616
|
-
ABBREV_COHORT,
|
|
617
|
-
FULL_COHORT,
|
|
618
|
-
profilePlot,
|
|
619
|
-
makeChartBtnMenu,
|
|
620
|
-
getProfilePlotConfig,
|
|
621
|
-
loadFilterTerms,
|
|
622
|
-
clearLocalFilters,
|
|
623
|
-
getDefaultProfilePlotSettings,
|
|
624
|
-
getProfileLogin
|
|
625
|
-
};
|
|
626
|
-
//# sourceMappingURL=chunk-JXUFZZRJ.js.map
|