@sjcrh/proteinpaint-client 2.204.0 → 2.206.0

package/dist/AIProjectAdmin-DGTBIE6E.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/aiProjectAdmin/defaults.ts", "../plots/aiProjectAdmin/repo/ProjectReposity.ts", "../plots/aiProjectAdmin/view/ProjectAdminRender.ts", "../plots/aiProjectAdmin/view/LogoutRenderer.ts", "../plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts", "../plots/aiProjectAdmin/view/ClassesTableRender.ts", "../plots/aiProjectAdmin/view/SelectorTableRender.ts", "../plots/aiProjectAdmin/view/UsersRender.ts", "../plots/aiProjectAdmin/view/CreateProjectRender.ts", "../plots/aiProjectAdmin/AIProjectAdmin.ts"],
-  "sourcesContent": ["import type Settings from './Settings'\n\nexport function getDefaultAIProjectAdminSettings(overrides = {}): Settings {\n\tconst defaults: Settings = {}\n\treturn Object.assign(defaults, overrides)\n}\n", "import { dofetch2, dofetch3 } from '#common/dofetch'\nimport type { AIProjectAdminActions, AIProjectAdminRequest, AIProjectAdminResponse } from '#types'\nexport class ProjectReposity {\n\tpublic async getAuthorization(\n\t\tgenome: string,\n\t\tdslabel: string,\n\t\tactions: AIProjectAdminActions[]\n\t): Promise<{ [key in AIProjectAdminActions]?: boolean }> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'auth',\n\t\t\tauth: actions\n\t\t}\n\n\t\ttry {\n\t\t\tconst response = await dofetch2('aiProjectAdmin', { body })\n\t\t\treturn response || {}\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching authorizations:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tpublic async getProjects(genome: string, dslabel: string): Promise<string[]> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'list'\n\t\t}\n\t\ttry {\n\t\t\tconst response = await dofetch3('aiProjectAdmin', { body })\n\t\t\treturn response || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/** Gets the image paths from db */\n\tpublic async getImagePaths(genome: string, dslabel: string, project: any): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'images',\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\treturn await dofetch3('aiProjectAdmin', { body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching images:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tpublic async updateProject(_body: any, method: string): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = Object.assign({}, _body, { for: 'admin' })\n\t\ttry {\n\t\t\tif (method == 'PUT' || method == 'DELETE') {\n\t\t\t\t/** 3rd argument is for serverData caching.\n\t\t\t\t * Do not cache put or delete requests */\n\t\t\t\treturn await dofetch2('aiProjectAdmin', { method, body }, {})\n\t\t\t}\n\t\t\treturn await dofetch3('aiProjectAdmin', { method, body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t//TODO: Will need a method to call metadata API, then build dictionary\n\tasync getTerms(app: any): Promise<any> {\n\t\tconst root = { id: '__root', name: 'root', __tree_isroot: true }\n\t\ttry {\n\t\t\tawait app.vocabApi.buildAdHocDictionary()\n\t\t\tconst terms = await app.vocabApi.getTermChildren(root, [])\n\t\t\treturn terms || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error getting terms:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tasync getAnnotations(genome: string, dslabel: string, projectId: number) {\n\t\ttry {\n\t\t\tconst body = {\n\t\t\t\tgenome,\n\t\t\t\tdslabel,\n\t\t\t\tprojectId,\n\t\t\t\twsimagesFilenames: ['all']\n\t\t\t}\n\t\t\tconst response: any = await dofetch3('aiProjectSelectedWSImages', { body })\n\t\t\tconst wsimages = response?.wsimages || []\n\t\t\tconst annotations: any[] = []\n\t\t\tfor (const w of wsimages) {\n\t\t\t\tconst anns = w.annotations || []\n\t\t\t\tconst filename = w.filename\n\t\t\t\tif (Array.isArray(anns)) {\n\t\t\t\t\tfor (const a of anns) {\n\t\t\t\t\t\t// attach filename so consumers know which WSI each annotation came from\n\t\t\t\t\t\tannotations.push(Object.assign({ filename }, a))\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn annotations\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching annotations from server:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\nimport { debounce } from 'debounce'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\n\nexport class ProjectAdminRender {\n\tdom: any\n\tprojects: any[]\n\tinteractions: AIProjectAdminInteractions\n\twsiApp: any\n\n\tconstructor(dom: any, projects: any[], interactions: AIProjectAdminInteractions, wsiApp: any) {\n\t\tthis.dom = dom\n\t\tthis.projects = projects //returns as [{ value: 'Project1' }, { value: 'Project2' }, ...]\n\t\tthis.interactions = interactions\n\t\tthis.wsiApp = wsiApp\n\t}\n\n\t/** Renders project administration UI, allowing users to\n\t * create new projects or edit existing ones.*/\n\trenderProjectAdmin() {\n\t\tconst projectDiv = this.dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-projects')\n\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\t//can this be async?\n\t\tthis.interactions\n\t\t\t.getAuthorization(['addProject'])\n\t\t\t.then(isAuthorized => {\n\t\t\t\tif (isAuthorized.addProject) {\n\t\t\t\t\tthis.renderCreateProject(projectDiv)\n\t\t\t\t}\n\t\t\t})\n\t\t\t.catch(e => {\n\t\t\t\tconsole.error('Error checking authorization:', e.message || e)\n\t\t\t\tsayerror(this.dom.errorDiv, 'Error checking user authorization. Please try again later.')\n\t\t\t})\n\t\t\t.finally(() => {\n\t\t\t\tthis.renderProjectSelection(projectDiv)\n\t\t\t})\n\t}\n\n\t/** Users submit a new project name before sample\n\t * filtering UI to finalize project creation.*/\n\trenderCreateProject(projectDiv) {\n\t\tconst newProjectDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-new').style('padding', '10px')\n\n\t\tconst input = newProjectDiv\n\t\t\t.append('input')\n\t\t\t.attr('id', 'sjpp-new-project-name')\n\t\t\t.attr('display', 'inline-block')\n\t\t\t.attr('placeholder', 'New project name')\n\n\t\tconst button = newProjectDiv\n\t\t\t.append('div')\n\t\t\t.text('Create Project')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.property('disabled', true)\n\t\t\t.on('click', async () => {\n\t\t\t\tconst projectName = input.property('value')\n\t\t\t\tconst prjtNameLen = projectName.trim().length\n\n\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\tinput.property('value', '')\n\t\t\t\t\tbutton.property('disabled', true)\n\n\t\t\t\t\t//Show error for 3 seconds, then remove\n\t\t\t\t\tsetTimeout(() => {\n\t\t\t\t\t\tthis.dom.errorDiv.selectAll('*').remove()\n\t\t\t\t\t}, 3000)\n\t\t\t\t}\n\t\t\t\tif (!(await this.interactions.getAuthorization(['addProject'])).addProject) {\n\t\t\t\t\treturn showError('Only users with admin role can create projects')\n\t\t\t\t}\n\n\t\t\t\tif (prjtNameLen == 0) {\n\t\t\t\t\t//Shouldn't be necessary because of the debouncer\n\t\t\t\t\treturn showError('Project name cannot be empty')\n\t\t\t\t}\n\t\t\t\tif (prjtNameLen > 50 || prjtNameLen < 3) {\n\t\t\t\t\treturn showError('Project name must be between 3 and 50 characters')\n\t\t\t\t}\n\t\t\t\tconst notUnique = this.projects.some((p: any) => p.name === projectName.trim())\n\t\t\t\tif (notUnique) {\n\t\t\t\t\treturn showError(`Project name '${projectName}' already exists`)\n\t\t\t\t}\n\n\t\t\t\t//Show project name in sandbox header\n\t\t\t\tif (this.dom.header) this.dom.header.text(`Project: ${projectName}`)\n\n\t\t\t\t//calls main() to trigger CreateProjectRender\n\t\t\t\tawait this.interactions.appDispatchEdit({ project: { name: projectName, type: 'new' } })\n\t\t\t})\n\n\t\tinput.on('keydown', () => {\n\t\t\tconst debouncer = () => {\n\t\t\t\tbutton.property('disabled', input.property('value').length == 0)\n\t\t\t}\n\t\t\tdebounce(debouncer, 300)()\n\t\t})\n\t}\n\n\t/** Users may select an existing project from a table\n\t * returned for the db to edit or delete, depending\n\t * on user roles.*/\n\trenderProjectSelection(projectDiv) {\n\t\tif (!this.projects.length) {\n\t\t\tprojectDiv\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', 'sjpp-project-select-table')\n\t\t\t\t.style('padding', '10px')\n\t\t\t\t.append('div')\n\t\t\t\t.text('No projects found. Please create a new project or request one from your admin.')\n\t\t\treturn\n\t\t}\n\n\t\tconst tableDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-table').style('padding', '10px')\n\n\t\tconst columns = [{ label: 'Project', sortable: true }]\n\t\tlet rows = this.projects.map(p => [{ value: p.name }])\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: 'Edit',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t//_ = event, __ = idx\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\t/** TODO: open wsisamples plot ||\n\t\t\t\t\t *  get project details rather than edit the db */\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\tawait this.interactions.appDispatchEdit({ project: { ...project, type: 'edit' } })\n\t\t\t\t\t// remove 'dev' for production\n\t\t\t\t\tawait this.interactions.launchViewer(this.dom.holder, [])\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t// Export button - pass only project.id and export will be CSV\n\t\t\t\ttext: 'Export',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\ttry {\n\t\t\t\t\t\tawait this.interactions.exportAnnotations(project.id)\n\t\t\t\t\t} catch (_: any) {\n\t\t\t\t\t\tsayerror(this.dom.errorDiv, 'Failed to export annotations')\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\t\tthis.interactions\n\t\t\t.getAuthorization(['deleteProject', 'logOut', 'required'])\n\t\t\t.then(isAuthorized => {\n\t\t\t\tif (isAuthorized.required) {\n\t\t\t\t\tcolumns.push({ label: 'User', sortable: false })\n\t\t\t\t\trows = this.projects.map(p => [{ value: p.name }, { value: p.current_user ?? 'Editable' }])\n\t\t\t\t}\n\t\t\t\tif (isAuthorized.deleteProject) {\n\t\t\t\t\tcolumnButtons.push({\n\t\t\t\t\t\ttext: 'Delete',\n\t\t\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t\t\tcallback: async (_, i) => {\n\t\t\t\t\t\t\tconst project = this.projects[i]\n\t\t\t\t\t\t\tthis.interactions.deleteProject(project).then(success => {\n\t\t\t\t\t\t\t\tif (success) {\n\t\t\t\t\t\t\t\t\t//Update UI after deletion. Maybe cleaner way to handle this?\n\t\t\t\t\t\t\t\t\t//Maybe app.dispatch and rerender instead?\n\t\t\t\t\t\t\t\t\tthis.projects.splice(i, 1)\n\t\t\t\t\t\t\t\t\t//Remove the table from the projectDiv and re-render\n\t\t\t\t\t\t\t\t\tprojectDiv.select('.sjpp-project-select-table').remove()\n\t\t\t\t\t\t\t\t\tthis.renderProjectSelection(projectDiv)\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t})\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t\tif (isAuthorized.logOut) {\n\t\t\t\t\tcolumnButtons.push({\n\t\t\t\t\t\ttext: 'Force Checkout',\n\t\t\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t\t\tcallback: async (_, i) => {\n\t\t\t\t\t\t\tconst project = this.projects[i]\n\t\t\t\t\t\t\tawait this.interactions.onLogOut(this.interactions.genome, this.interactions.dslabel, project.id)\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t})\n\t\t\t.catch(e => {\n\t\t\t\tconsole.error('Error checking authorization:', e.message || e)\n\t\t\t\tsayerror(this.dom.errorDiv, 'Error checking user authorization. Please try again later.')\n\t\t\t})\n\t\t\t.finally(() => {\n\t\t\t\trenderTable({\n\t\t\t\t\tdiv: tableDiv,\n\t\t\t\t\trows,\n\t\t\t\t\theader: {\n\t\t\t\t\t\tallowSort: true\n\t\t\t\t\t},\n\t\t\t\t\tcolumns,\n\t\t\t\t\tsingleMode: true,\n\t\t\t\t\tcolumnButtons\n\t\t\t\t})\n\t\t\t})\n\t}\n}\n", "import type { AIProjectAdminInteractions } from '#plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts'\n\nexport class LogoutRenderer {\n\tprivate interactions: AIProjectAdminInteractions\n\n\tconstructor(interactions: AIProjectAdminInteractions) {\n\t\tthis.interactions = interactions\n\t}\n\n\trender(holder, genome: string, dslabel: string, projectId: number) {\n\t\tholder\n\t\t\t.append('div')\n\t\t\t.style('position', 'absolute')\n\t\t\t.style('top', '10px')\n\t\t\t.attr('data-testid', 'logout-button')\n\t\t\t.style('right', '20px')\n\t\t\t.style('z-index', '1000')\n\t\t\t.append('button')\n\t\t\t.attr('type', 'submit')\n\t\t\t.style('font-size', '1.25em')\n\t\t\t.style('padding', '10px 25px')\n\t\t\t.style('border-radius', '20px')\n\t\t\t.style('border', '1px solid black')\n\t\t\t.style('background-color', 'white')\n\t\t\t.style('cursor', 'pointer')\n\t\t\t.text('Check Out')\n\t\t\t.on('click', async () => {\n\t\t\t\tholder.selectAll('*').remove()\n\n\t\t\t\tawait this.interactions.onLogOut(genome, dslabel, projectId)\n\t\t\t})\n\t}\n}\n", "import type { ProjectReposity } from '../repo/ProjectReposity'\nimport type { AIProjectAdminActions, AIProjectAdminResponse } from '#types'\nimport { buildAnnotationsCsv } from '#plots/wsiviewer/interactions/annotationsCsv.ts'\nimport type Settings from '../Settings'\nimport { dofetch3, clearServerDataCache } from '#common/dofetch'\nimport { LogoutRenderer } from '../view/LogoutRenderer'\nimport { sayerror } from '#dom'\n\nexport class AIProjectAdminInteractions {\n\tapp: any\n\tid: string\n\tgenome: string\n\tdslabel: string\n\tprjtRepo: ProjectReposity\n\n\tconstructor(app: any, id: string, prjtRepo: ProjectReposity) {\n\t\tthis.app = app\n\t\tthis.id = id\n\t\tthis.genome = app.vocabApi.vocab.genome\n\t\tthis.dslabel = app.vocabApi.vocab.dslabel\n\t\tthis.prjtRepo = prjtRepo\n\t}\n\tasync getAuthorization(actions: AIProjectAdminActions[]): Promise<{ [key in AIProjectAdminActions]?: boolean }> {\n\t\ttry {\n\t\t\treturn await this.prjtRepo.getAuthorization(this.genome, this.dslabel, actions)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error checking authorization:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync addProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst settings: Settings = config.settings || {}\n\t\tconst projectObject = Object.assign({}, settings.project, opts.project)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: projectObject\n\t\t}\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'PUT')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error adding project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync editProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst settings: Settings = config.settings || {}\n\t\tconst project = Object.assign(\n\t\t\t{},\n\t\t\tsettings.project,\n\t\t\t{\n\t\t\t\ttype: 'edit'\n\t\t\t},\n\t\t\topts.project\n\t\t)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\tconst res = (await this.prjtRepo.updateProject(body, 'POST')) as any\n\t\t\tif (!project.id) project.id = res.projectId\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error editing project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t\tawait this.appDispatchEdit({ project }, config)\n\t}\n\n\tasync deleteProject(project: { value: string; id: number }): Promise<boolean> {\n\t\tlet success = false\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: {\n\t\t\t\tname: project.value,\n\t\t\t\tid: project.id\n\t\t\t}\n\t\t}\n\n\t\ttry {\n\t\t\tconst response = await this.prjtRepo.updateProject(body, 'DELETE')\n\t\t\tif (response && response.status === 'ok') {\n\t\t\t\tsuccess = true\n\t\t\t}\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error deleting project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t\treturn success\n\t}\n\n\tasync getFilteredImages(filter: any): Promise<AIProjectAdminResponse> {\n\t\tconst config = this.getConfig()\n\t\tconst settings: Settings = config.settings || {}\n\t\treturn await this.app.vocabApi.getFilteredAiImages(settings.project, filter)\n\t}\n\n\tasync launchViewer(holder: any, _images?: string[]): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst settings: Settings = config.settings\n\t\tif (!settings.project || !settings.project.id) throw new Error('Project is required to launch viewer')\n\t\tlet images: string[] = []\n\t\tif (_images && _images.length > 0) {\n\t\t\timages = _images\n\t\t} else {\n\t\t\tconst response: AIProjectAdminResponse = await this.prjtRepo.getImagePaths(\n\t\t\t\tthis.genome,\n\t\t\t\tthis.dslabel,\n\t\t\t\tsettings.project\n\t\t\t)\n\t\t\tif (response.status !== 'ok') {\n\t\t\t\tawait this.appDispatchEdit({ project: { name: '', type: 'logout' } }, config)\n\n\t\t\t\tsayerror(holder, response.error || 'Error fetching images')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tholder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\t\t\timages = response.images\n\t\t}\n\t\tconst wsiViewer = await import('#plots/wsiviewer/plot.wsi.js')\n\t\tconst genome = this.genome\n\t\tconst dslabel = this.dslabel\n\t\tconst logoutRenderer = new LogoutRenderer(this)\n\t\tlogoutRenderer.render(holder, genome, dslabel, settings.project.id)\n\t\twsiViewer.default(this.dslabel, holder, { name: this.genome }, null, settings.project.id, images, true)\n\t}\n\n\tpublic async appDispatchEdit(settings: Settings, config: any = {}): Promise<void> {\n\t\t//When using this function, always pass a project type\n\t\tif (!config?.settings) {\n\t\t\tconfig = this.getConfig()\n\t\t\tif (!config) throw new Error(`No plot with id='${this.id}' found.`)\n\t\t}\n\t\tconst configSettings: Settings = config.settings\n\t\tconst mergedSettings: Settings = {\n\t\t\tproject: { name: '', type: 'logout', ...configSettings?.project, ...settings.project }\n\t\t}\n\t\tawait this.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: this.id,\n\t\t\tconfig: { settings: mergedSettings }\n\t\t})\n\t}\n\n\tprivate getConfig(): any {\n\t\treturn this.app.getState().plots.find((p: any) => p.id === this.id)\n\t}\n\n\tpublic async exportAnnotations(projectId: number): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tif (!config || !config.settings) throw new Error(`No plot with id='${this.id}' found.`)\n\t\tconst settings: Settings = config.settings || {}\n\t\t// fetch annotations for the entire project (server endpoint will expand ['all'] to all images)\n\t\tlet annotations: any[] = []\n\t\ttry {\n\t\t\tannotations = await this.prjtRepo.getAnnotations(this.genome, this.dslabel, projectId)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error fetching annotations for export:', e?.message || e)\n\t\t\tthrow e\n\t\t}\n\n\t\t// Always produce CSV\n\t\tconst mime = 'text/csv;charset=utf-8;'\n\t\tlet content: string\n\n\t\tif (!Array.isArray(annotations) || annotations.length === 0) {\n\t\t\tcontent = ''\n\t\t} else {\n\t\t\t// use shared CSV builder; let it pick per-annotation filename (a.filename || a.image)\n\t\t\tcontent = buildAnnotationsCsv(annotations as any[])\n\t\t}\n\n\t\t// build a safe filename for download: prefer project name, fallback to projectId\n\t\tconst rawName = settings.project && settings.project.name ? String(settings.project.name) : `project-${projectId}`\n\t\tconst safeName = rawName.replace(/[^a-z0-9_.-]/gi, '_').slice(0, 200)\n\t\tconst filename = `${safeName}-annotations.csv`\n\n\t\ttry {\n\t\t\tconst blob = new Blob([content], { type: mime })\n\t\t\tconst url = URL.createObjectURL(blob)\n\t\t\tconst a = document.createElement('a')\n\t\t\ta.href = url\n\t\t\ta.download = filename\n\t\t\tdocument.body.appendChild(a)\n\t\t\ta.click()\n\t\t\ta.remove()\n\t\t\tsetTimeout(() => URL.revokeObjectURL(url), 1000)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error creating annotation download:', e?.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync onLogOut(genome: string, dslabel: string, projectId: number): Promise<void> {\n\t\ttry {\n\t\t\tawait dofetch3('aiProjectAdmin', {\n\t\t\t\tbody: {\n\t\t\t\t\tgenome,\n\t\t\t\t\tdslabel,\n\t\t\t\t\tfor: 'logout',\n\t\t\t\t\tproject: { id: projectId }\n\t\t\t\t}\n\t\t\t})\n\t\t\tclearServerDataCache()\n\t\t\tawait this.appDispatchEdit({ project: { name: '', id: projectId, type: 'logout' } })\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error logging out: ' + (e.message || e))\n\t\t\tthrow e\n\t\t}\n\t}\n}\n", "import { renderTable } from '#dom'\nimport { getColors } from '#shared/common.js'\nimport { rgb } from 'd3-color'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { Elem } from '../../../types/d3'\n\nexport class ClassesTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Elem\n\t\tbtnDiv: Elem\n\t}\n\tcolumns: TableColumn[]\n\trows: TableRow[]\n\t/** table.ts updates this.rows and cell values in editCallback\n\t * Save a copy to check for duplicates when editing class names.*/\n\trowsCopy: TableRow[]\n\n\tconstructor(holder: any, rows?: TableRow[]) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder.append('div'),\n\t\t\tbtnDiv: holder.append('div')\n\t\t}\n\t\tthis.columns = [\n\t\t\t{ label: '' }, // Empty for the delete icon\n\t\t\t{\n\t\t\t\tlabel: 'NAME',\n\t\t\t\teditCallback: (rowIdx, cell) => {\n\t\t\t\t\tconst newValue = (cell.value as string).trim()\n\t\t\t\t\tconst foundSameName = this.rows.some((r, i) => newValue === (r[1].value as string).trim() && i !== rowIdx)\n\t\t\t\t\tif (foundSameName) {\n\t\t\t\t\t\talert(`Class name '${newValue}' already exists`)\n\t\t\t\t\t\t/** Reset to original value\n\t\t\t\t\t\t * renderTable() updates arg.rows and cell value before this callback.\n\t\t\t\t\t\t * This resets the value to the original value */\n\t\t\t\t\t\tcell.value = this.rowsCopy[rowIdx][1].value\n\t\t\t\t\t\tcell.__td.text(this.rowsCopy[rowIdx][1].value)\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\t\t\t\t}\n\t\t\t},\n\t\t\t{ label: 'COLOR' }\n\t\t]\n\t\tconst colorScale = getColors(5)\n\t\tthis.rows = rows || this.setDefaultClasses(colorScale)\n\t\tthis.rowsCopy = []\n\n\t\tthis.renderTable()\n\t\tthis.renderAddClassBtn(colorScale)\n\t}\n\n\trenderTable() {\n\t\tthis.dom.tableDiv.select('table').remove()\n\t\tif (!this.rows || this.rows.length === 0) return\n\n\t\t// Deep copy to avoid reference issues\n\t\t// Regenerate on every render\n\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.columns,\n\t\t\trows: this.rows,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tsingleMode: false,\n\t\t\tresize: true\n\t\t})\n\n\t\t//editCallback only works with changing the value of the cell\n\t\tfor (const [i, row] of this.rows.entries()) {\n\t\t\tconst deleteBtn = row[0].__td.select('.sja_menuoption')\n\t\t\tdeleteBtn.on('click', () => {\n\t\t\t\tthis.rows.splice(i, 1)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t\t}\n\t}\n\n\tsetDefaultClasses(colorScale) {\n\t\t//TODO default classes from dataset\n\t\tconst rows: TableRow[] = []\n\n\t\tfor (let i = 0; i < 4; i++) {\n\t\t\tthis.getNewClass(colorScale, rows)\n\t\t}\n\n\t\treturn rows\n\t}\n\n\tgetNewClass(colorScale: any, rows: TableRow[]) {\n\t\tconst getName = (i: number) => `New class ${i}`\n\n\t\tlet i = 1\n\t\tlet found = true\n\t\twhile (found) {\n\t\t\tconst checkName = getName(i)\n\t\t\tfound = rows.some(r => r[1].value == checkName)\n\t\t\tif (found) i++\n\t\t}\n\n\t\trows.push([\n\t\t\t{ html: `<div class=\"sja_menuoption\">&times;<div>` },\n\t\t\t{ value: getName(i) },\n\t\t\t{ color: rgb(colorScale(`${i}`)).formatHex() }\n\t\t])\n\t}\n\n\trenderAddClassBtn(colorScale: any) {\n\t\tthis.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Add Class')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin', '10px 0px 0px 0px')\n\t\t\t.on('click', () => {\n\t\t\t\tif (this.rows.length >= 9) {\n\t\t\t\t\talert('Maximum number of classes reached.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tthis.getNewClass(colorScale, this.rows)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t}\n}\n", "import { renderTable } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport type { Elem, Div } from '../../../types/d3'\n\nexport class SelectorTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Div | Elem\n\t\tbtnDiv: Div | Elem\n\t}\n\timages: { rows: any[]; cols: any[] } = { rows: [], cols: [] }\n\tinteractions: AIProjectAdminInteractions\n\tselectedRows: Set<number> = new Set<number>()\n\tsortedIndexMap: number[] = []\n\tfileColumn = 0\n\tconstructor(holder: Elem, interactions: AIProjectAdminInteractions, images: any) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', '.sjpp-deletable-ai-prjt-admin-div')\n\t\t\t\t.attr('id', 'sjpp-selector-table')\n\t\t\t\t.style('padding', '10px 0'),\n\t\t\tbtnDiv: holder.append('div').attr('class', '.sjpp-deletable-ai-prjt-admin-div').attr('id', 'sjpp-selector-btns')\n\t\t}\n\n\t\tthis.images = images\n\n\t\tthis.interactions = interactions\n\n\t\t// Collect selectedImages from any known location\n\t\tconst selectedList: string[] = images?.selectedImages as string[]\n\n\t\t// Normalize image helper: strip .svs and lowercase for robust comparison\n\t\tconst normalizeImageName = (s: any) =>\n\t\t\tString(s ?? '')\n\t\t\t\t.replace(/\\.svs$/i, '')\n\t\t\t\t.toLowerCase()\n\n\t\tconst selectedSet = new Set((selectedList || []).map(normalizeImageName))\n\n\t\t// Build set of selected row indices whose image (assumed in first column value) is in selectedSet\n\t\tthis.fileColumn = 0\n\t\tthis.selectedRows = new Set<number>()\n\t\t;(this.images?.rows ?? []).forEach((row: any, i: number) => {\n\t\t\tconst candidate = row?.[this.fileColumn]?.value\n\t\t\tconst n = normalizeImageName(candidate)\n\t\t\tif (selectedSet.has(n)) this.selectedRows.add(i)\n\t\t})\n\n\t\tthis.render()\n\t}\n\n\tprivate render() {\n\t\tif (this.images === undefined) this.dom.tableDiv.append('div').text('No images found').style('color', 'red')\n\t\tconst columns = this.images.cols.map(c => ({ ...c, sortable: true })) || []\n\n\t\t// If columns missing, show a friendly message instead of throwing\n\t\tif (!columns.length) {\n\t\t\tthis.dom.tableDiv.append('div').text('Missing columns data').style('color', 'red')\n\t\t\t// still render Apply button (disabled) so user can continue\n\t\t\tthis.renderApplyBtn(/*disable=*/ true)\n\t\t\treturn\n\t\t}\n\n\t\t// Build mapping of rows with original indices and selection flags\n\t\tconst rows = (this.images?.rows ?? []) as any[]\n\t\tconst mapped = rows.map((row, origIdx) => ({\n\t\t\trow,\n\t\t\torigIdx,\n\t\t\tselected: this.selectedRows.has(origIdx)\n\t\t}))\n\n\t\t// Sort so selected rows come first, stable by original index\n\t\tmapped.sort((a, b) => {\n\t\t\tconst selDiff = Number(b.selected) - Number(a.selected)\n\t\t\treturn selDiff || a.origIdx - b.origIdx\n\t\t})\n\n\t\t// Prepare sorted rows and a map from sorted index -> original index\n\t\tconst rowsSorted = mapped.map(m => m.row)\n\t\tthis.sortedIndexMap = mapped.map(m => m.origIdx)\n\n\t\t// Selected indices must be in terms of the sorted array for the renderer\n\t\tconst selectedRowsForRender = mapped.reduce<number[]>((acc, m, idx) => {\n\t\t\tif (m.selected) acc.push(idx)\n\t\t\treturn acc\n\t\t}, [])\n\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns,\n\t\t\trows: rowsSorted,\n\t\t\tselectedRows: selectedRowsForRender,\n\t\t\tstriped: true,\n\t\t\theader: { allowSort: true },\n\t\t\tnoButtonCallback: (_, node) => {\n\t\t\t\t// Use checkbox value from renderTable as a stable index even after user sorting.\n\t\t\t\tconst initialIdx = Number((node as HTMLInputElement)?.value)\n\t\t\t\tconst orig = this.sortedIndexMap?.[initialIdx]\n\t\t\t\tif (orig === undefined) return\n\t\t\t\tif (node.checked) {\n\t\t\t\t\tthis.selectedRows.add(orig)\n\t\t\t\t} else {\n\t\t\t\t\tthis.selectedRows.delete(orig)\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\n\t\tthis.renderApplyBtn(/*disable=*/ false)\n\t}\n\n\tprivate renderApplyBtn(disable = false) {\n\t\tconst btn = this.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'block')\n\t\t\t.style('width', 'fit-content')\n\t\t\t.style('margin-left', '5vw')\n\n\t\tif (disable) btn.attr('disabled', true)\n\n\t\tbtn.on('click', async () => {\n\t\t\tif (!this.selectedRows.size) {\n\t\t\t\talert(`No rows selected. Please select some rows.`)\n\t\t\t\treturn\n\t\t\t}\n\t\t\t//Don't allow multiple clicks\n\t\t\tbtn.attr('disabled', true)\n\n\t\t\tconst images = Array.from(this.selectedRows).map(i => `${this.images.rows[i][this.fileColumn].value}.svs`)\n\t\t\tawait this.interactions.editProject({\n\t\t\t\tproject: {\n\t\t\t\t\timages,\n\t\t\t\t\ttype: 'edit'\n\t\t\t\t}\n\t\t\t})\n\t\t\t;(this.dom.holder as any).selectAll('*').remove()\n\t\t\tawait this.interactions.launchViewer(this.dom.holder, images)\n\t\t})\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\n\nexport class UsersRender {\n\tdom: any\n\tusers: string[]\n\n\tconstructor(dom: any, users: string[] = []) {\n\t\tthis.dom = dom\n\t\tthis.users = users.slice()\n\t}\n\n\trender() {\n\t\tconst container = this.dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-users-render')\n\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\t\t.style('padding', '10px')\n\n\t\tconst inputRow = container.append('div').attr('class', 'sjpp-users-input-row').style('margin-bottom', '10px')\n\n\t\tconst input = inputRow\n\t\t\t.append('input')\n\t\t\t.attr('type', 'text')\n\t\t\t.attr('placeholder', 'user@example.com')\n\t\t\t.attr('id', 'sjpp-user-email-input')\n\t\t\t.style('margin-right', '8px')\n\t\t\t.style('width', '300px')\n\n\t\tconst addBtn = inputRow\n\t\t\t.append('div')\n\t\t\t.text('Add')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.property('disabled', true)\n\t\t\t.on('click', () => {\n\t\t\t\tconst email = input.property('value').trim()\n\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\t// clear after 3s\n\t\t\t\t\tsetTimeout(() => this.dom.errorDiv.selectAll('*').remove(), 3000)\n\t\t\t\t}\n\n\t\t\t\tif (email.length === 0) {\n\t\t\t\t\treturn showError('Email cannot be empty')\n\t\t\t\t}\n\n\t\t\t\tconst emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\\.[A-Za-z]{2,}$/\n\n\t\t\t\tif (!emailRe.test(email)) {\n\t\t\t\t\treturn showError('Invalid email address')\n\t\t\t\t}\n\n\t\t\t\tif (this.users.includes(email)) {\n\t\t\t\t\treturn showError('Email already added')\n\t\t\t\t}\n\n\t\t\t\tthis.users.push(email)\n\t\t\t\tinput.property('value', '')\n\t\t\t\taddBtn.property('disabled', true)\n\t\t\t\tthis.renderTableArea(container)\n\t\t\t})\n\n\t\tinput.on('input', () => {\n\t\t\taddBtn.property('disabled', input.property('value').trim().length === 0)\n\t\t})\n\n\t\tthis.renderTableArea(container)\n\t}\n\n\tprivate renderTableArea(container: any) {\n\t\tcontainer.select('.sjpp-users-table-area').remove()\n\n\t\tconst tableDiv = container.append('div').attr('class', 'sjpp-users-table-area').style('padding', '6px 0')\n\n\t\tif (!this.users.length) {\n\t\t\ttableDiv.append('div').text('No users added yet.').style('color', '#666')\n\t\t\treturn\n\t\t}\n\n\t\tconst columns = [{ label: 'Email', sortable: true }]\n\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: '\u00D7',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: (_, idx: number) => {\n\t\t\t\t\t// remove user and re-render\n\t\t\t\t\tthis.users.splice(idx, 1)\n\t\t\t\t\t// clear and re-render table area\n\t\t\t\t\tcontainer.select('.sjpp-users-table-area').remove()\n\t\t\t\t\tthis.renderTableArea(container)\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\n\t\trenderTable({\n\t\t\tdiv: tableDiv,\n\t\t\trows: this.users.map(u => [{ value: u }]),\n\t\t\tcolumns,\n\t\t\tcolumnButtons,\n\t\t\tsingleMode: false,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tresize: true\n\t\t})\n\t\ttableDiv.selectAll('.sja_menuoption').html('\u00D7<div></div>')\n\t}\n}\n", "import { filterInit, getNormalRoot } from '#filter'\nimport { ClassesTableRender } from './ClassesTableRender'\nimport type { Elem } from '../../../types/d3'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport { SelectorTableRender } from './SelectorTableRender'\nimport { UsersRender } from './UsersRender'\nimport type { AIProjectAdminResponse } from '@sjcrh/proteinpaint-types'\n\nexport class CreateProjectRender {\n\tdom: {\n\t\tholder: Elem\n\t\terrorDiv: Elem\n\t\tfilterDiv: Elem\n\t\tclassDiv: Elem\n\t\tusersDiv?: Elem\n\t}\n\tapp: any\n\tinteractions: AIProjectAdminInteractions\n\tfilter: any\n\tclassesTable?: ClassesTableRender\n\tusersRender?: UsersRender\n\n\tconstructor(dom: any, app: any, interactions: AIProjectAdminInteractions) {\n\t\tdom.holder.style('padding', '10px 20px').attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\n\t\tconst filterDiv = dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-filter-div')\n\n\t\tconst wrapper = dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-classes-users-wrapper')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('gap', '20px')\n\t\t\t.style('align-items', 'flex-start')\n\t\t\t.style('padding', '20px 0px')\n\n\t\tconst left = wrapper.append('div').attr('id', 'sjpp-ai-prjt-admin-classes-table').style('flex', '0 1 auto')\n\n\t\tconst right = wrapper\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-users')\n\t\t\t.style('width', '320px')\n\t\t\t.style('margin-left', '8px')\n\n\t\tthis.dom = {\n\t\t\tholder: dom.holder,\n\t\t\terrorDiv: dom.errorDiv,\n\t\t\tfilterDiv: filterDiv,\n\t\t\tclassDiv: left,\n\t\t\tusersDiv: right\n\t\t}\n\n\t\tthis.app = app\n\t\tthis.interactions = interactions\n\t\tthis.filter = null\n\t}\n\n\trender() {\n\t\tthis.renderFilter()\n\t\tthis.classesTable = new ClassesTableRender(this.dom.classDiv)\n\n\t\tthis.usersRender = new UsersRender({ holder: this.dom.usersDiv, errorDiv: this.dom.errorDiv }, [])\n\t\tthis.usersRender.render()\n\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderFilter() {\n\t\tconst filter = filterInit({\n\t\t\tholder: this.dom.filterDiv,\n\t\t\temptyLabel: 'Add filter',\n\t\t\tvocabApi: this.app.vocabApi,\n\t\t\ttermdbConfig: this.app.vocabApi.termdbConfig,\n\t\t\tcallback: filter => {\n\t\t\t\tthis.filter = filter\n\t\t\t}\n\t\t})\n\n\t\tconst state = this.app.getState()\n\t\tconst root = getNormalRoot(state.termfilter.filter)\n\t\tfilter.main(root)\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.classDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin-left', '200px')\n\t\t\t.on('click', async () => {\n\t\t\t\t/**** Uncomment before production */\n\n\t\t\t\t// const invalidInfo = this.validateInput()\n\t\t\t\t// const numInvalid = invalidInfo.entries?.length\n\t\t\t\t// if (numInvalid) {\n\t\t\t\t// \t/** TODO: allow user to ignore filter error on second click */\n\t\t\t\t// \tif (numInvalid === 1) sayerror(this.dom.errorDiv, invalidInfo.entries[0].reason)\n\t\t\t\t//  else InvalidDataUI.render(this.dom.errorDiv, invalidInfo)\n\t\t\t\t// \treturn\n\t\t\t\t// }\n\t\t\t\tbtn.attr('disabled', true) //Don't allow multiple clicks\n\t\t\t\tconst selections: AIProjectAdminResponse = await this.interactions.getFilteredImages(this.filter)\n\t\t\t\tif ((this.filter && selections.status !== 'ok') || selections.data?.selectedImages?.length === 0) {\n\t\t\t\t\talert('No images match your filter criteria.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tif (!this.usersRender || !Array.isArray(this.usersRender.users) || this.usersRender.users.length === 0) {\n\t\t\t\t\talert('Please add at least one user.')\n\t\t\t\t\tbtn.attr('disabled', null)\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\tawait this.interactions.addProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\tfilter: this.filter,\n\t\t\t\t\t\tclasses: this.classesTable!.rows.map((row, i) => {\n\t\t\t\t\t\t\treturn { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` }\n\t\t\t\t\t\t}),\n\t\t\t\t\t\tusers: this.usersRender?.users || []\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tnew SelectorTableRender(this.dom.holder, this.interactions, selections.data)\n\t\t\t})\n\t}\n\n\t/**** Uncomment before production */\n\t// private validateInput() {\n\t// \tconst invalidInfo = {\n\t// \t\tentries: [] as { dataType: string; reason: string }[],\n\t// \t\terrorMsg: 'Please clear all \"Data type: Class\" errors before applying changes.'\n\t// \t}\n\n\t// \t//Show user error if no filter is defined.\n\t// \tif (!this.filter) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })\n\t// \t}\n\t// \t//Check if all classes were deleted\n\t// \tconst classes = this.classesTable?.rows.map(row => row[1].value) || []\n\t// \tif (classes.length === 0) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })\n\t// \t}\n\t// \t//Check to see if any class is still a default class\n\t// \tconst unchangedClasses =\n\t// \t\tthis.classesTable?.rows\n\t// \t\t\t.filter(row => (row[1]?.value as string)?.startsWith('New class'))\n\t// \t\t\t.map(r => r[1]?.value as string) || []\n\t// \tfor (const c of unchangedClasses) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })\n\t// \t}\n\n\t// \treturn invalidInfo\n\t// }\n}\n", "import { getCompInit, copyMerge, type RxComponent, type ComponentApi } from '#rx'\nimport { PlotBase } from '../PlotBase'\nimport type { MassState } from '#mass/types/mass'\nimport { getDefaultAIProjectAdminSettings } from './defaults'\nimport { ProjectReposity } from './repo/ProjectReposity'\nimport { ProjectAdminRender } from './view/ProjectAdminRender'\nimport { AIProjectAdminInteractions } from './interactions/AIProjectAdminInteractions'\nimport { CreateProjectRender } from './view/CreateProjectRender'\nimport { sayerror } from '#dom'\n\n/** This plot supports training AI models.\n * The UI allows users to create and manage projects. */\n\nclass AIProjectAdmin extends PlotBase implements RxComponent {\n\tstatic type = 'AIProjectAdmin'\n\n\ttype: string\n\tprjtRepo: ProjectReposity\n\tprojects?: any[]\n\tprjtAdminUI?: ProjectAdminRender\n\tinteractions?: AIProjectAdminInteractions\n\tdom!: {\n\t\t[name: string]: any\n\t}\n\n\tconstructor(opts: any, api: ComponentApi) {\n\t\tsuper(opts, api)\n\t\tthis.type = AIProjectAdmin.type\n\t\tthis.dom = {\n\t\t\tholder: opts.holder,\n\t\t\terrorDiv: opts.holder.append('div').style('margin', '3px').attr('class', 'sjpp-ai-prjt-admin-error')\n\t\t}\n\t\tif (opts.header) this.dom.header = opts.header\n\n\t\tthis.prjtRepo = new ProjectReposity()\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config = appState.plots.find((p: any) => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\t\treturn {\n\t\t\tconfig,\n\t\t\tvocab: appState.vocab,\n\t\t\tfilter: appState.termfilter.filter\n\t\t}\n\t}\n\n\tasync displayProjects(state: MassState, interactions: AIProjectAdminInteractions) {\n\t\ttry {\n\t\t\tthis.projects = await this.prjtRepo.getProjects(state.vocab.genome, state.vocab.dslabel)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error initializing AIProjectAdmin:', e)\n\t\t\tthrow e\n\t\t}\n\t\tthis.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, interactions, this.app)\n\t\tthis.prjtAdminUI.renderProjectAdmin()\n\t}\n\n\tasync init(appState: MassState) {\n\t\tthis.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo)\n\t\tawait this.displayProjects(appState, this.interactions)\n\t}\n\n\tasync main() {\n\t\tconst state = structuredClone(this.state)\n\t\tconst config = state.config\n\t\tif (config.chartType != this.type) return\n\t\tconst project = config.settings.project\n\t\tif (!project) return\n\n\t\tif (!this.interactions) throw new Error('AIProjectAdminInteractions not initialized')\n\n\t\tthis.dom.holder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tif (project.type === 'new') {\n\t\t\tconst terms = await this.prjtRepo.getTerms(this.app)\n\t\t\tif (!terms || terms.length === 0) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'No metadata found.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tconst createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions)\n\t\t\tcreateProjectRender.render()\n\t\t}\n\n\t\t//launching project from embedded runpp()\n\t\tif (project.type == 'existing') {\n\t\t\tif (!project.name) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'Project name not provided.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tif (!project.id) {\n\t\t\t\tconst existingProject = this.projects?.find(p => p.name === project.name)\n\t\t\t\tif (!existingProject) {\n\t\t\t\t\tsayerror(this.dom.errorDiv, `Project ${project.name} not found.`)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t//No need to call dispatch. Save to the state and call the wsi viewer.\n\t\t\t\tawait this.app.save({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: this.id,\n\t\t\t\t\tconfig: { settings: { project: { id: existingProject.id } } }\n\t\t\t\t})\n\t\t\t}\n\n\t\t\tawait this.interactions.launchViewer(this.dom.holder, [])\n\t\t}\n\t\tif (project.type === 'logout') {\n\t\t\tawait this.displayProjects(state, this.interactions)\n\t\t}\n\t}\n}\nexport const aiProjectAdminInit = getCompInit(AIProjectAdmin)\nexport const componentInit = aiProjectAdminInit\n\nexport async function getPlotConfig(opts: any) {\n\tconst config = {\n\t\tchartType: 'AIProjectAdmin',\n\t\tsubfolder: 'aiProjectAdmin',\n\t\textension: 'ts',\n\t\thidePlotFilter: true, //Disable the filter in the sandbox header\n\t\tsettings: getDefaultAIProjectAdminSettings(opts.overrides)\n\t}\n\tif (opts.settings?.project && !opts.settings?.project?.type) {\n\t\t//If passing project from embedded runpp(), force type\n\t\topts.settings.project.type = 'existing'\n\t}\n\treturn copyMerge(config, opts)\n}\n"],
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-  "names": ["_", "i", "filter"]
-}

package/dist/AggMatrixInput-FH6WRTLP.js

@@ -1,277 +0,0 @@
-import {
-  validatePlotConfig
-} from "./chunk-LXTBOUBG.js";
-import {
-  PlotBase,
-  appInit,
-  capitalizeFirstLetter
-} from "./chunk-7RX5UEF3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-L42F5J5C.js";
-import "./chunk-HKQDZKSF.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-EEB5VE2A.js";
-import {
-  icons
-} from "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-FUSTNOQZ.js";
-import "./chunk-VSPUFGDX.js";
-import "./chunk-WVPFLPWB.js";
-import {
-  availableAggregateMethods
-} from "./chunk-S5SOLLGM.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-D6G64XPJ.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-YLJOZP4P.js";
-import "./chunk-HDTFYTEL.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// plots/AggMatrixInput.ts
-var chartType = "aggMatrixInput";
-var AggMatrixInput = class _AggMatrixInput extends PlotBase {
-  constructor(opts, api) {
-    super(opts, api);
-    this.startOpt = "-- Select --";
-    this.sizeMethod = "";
-    this.gradientMethod = "";
-    this.nextSectionViewId = 0;
-    this.sectionViews = /* @__PURE__ */ new Map();
-    this.type = _AggMatrixInput.type;
-  }
-  static {
-    this.type = chartType;
-  }
-  getState(appState) {
-    const config = appState.plots.find((plot) => plot.id === this.id);
-    if (!config) throw new Error(`No plot with id='${this.id}' found`);
-    return { config, activeCohort: appState.activeCohort };
-  }
-  async init() {
-    const wrapper = this.opts.holder.append("div").style("padding", "10px").attr("data-testid", "sjpp-agg-matrix-input-wrapper");
-    this.dom.methodSelects = {};
-    for (const method of ["size", "gradient"]) {
-      const methodKey = `${method}Method`;
-      const methodWrapper = wrapper.append("div").style("margin", "5px").style("display", "inline-flex").style("align-items", "center");
-      methodWrapper.append("label").attr("for", `sjpp-agg-matrix-${method}-method-select`).style("margin-right", "5px").text(`${capitalizeFirstLetter(method)} method:`);
-      this.dom.methodSelects[methodKey] = methodWrapper.append("select").attr("id", `sjpp-agg-matrix-${method}-method-select`).attr("name", `sjpp-agg-matrix-${method}-method-select`).on("change", async (event) => {
-        this[methodKey] = event.target.value === this.startOpt ? "" : event.target.value;
-        await this.main();
-      });
-      this.dom.methodSelects[methodKey].selectAll("option").data([this.startOpt, ...availableAggregateMethods]).join("option").attr("value", (value) => value).text((value) => value);
-    }
-    const axisWrapper = wrapper.append("div").style("display", "grid").style("grid-template-columns", "repeat(auto-fit, minmax(320px, 1fr))").style("gap", "12px").style("margin-bottom", "10px");
-    this.dom.sectionHolders = {};
-    for (const [type, label] of [
-      ["row", "Row"],
-      ["column", "Column"]
-    ]) {
-      const axis = axisWrapper.append("div");
-      const header = axis.append("div").style("border-bottom", "0.5px solid #ddd").style("padding", "5px");
-      header.append("span").style("margin-right", "5px").text(`${label} sections:`);
-      header.append("button").attr("type", "button").attr("data-testid", "sjpp-agg-matrix-add-section-btn").style("border", "none").style("border-radius", "12px").style("padding", "6px 10px").style("background-color", "#cfe2f3").text(`Add ${type} section`).on("click", () => this.addSection(type));
-      this.dom.sectionHolders[type] = axis.append("div");
-    }
-    const submitWrapper = wrapper.append("div").style("margin-top", "12px");
-    this.dom.submit = submitWrapper.append("button").attr("data-testid", "sjpp-agg-matrix-submit-btn").attr("type", "button").property("disabled", true).style("border", "none").style("border-radius", "20px").style("padding", "5px 10px").style("font-size", "0.9em").text("Submit").on("click", () => this.submit());
-    this.dom.validationMessage = submitWrapper.append("div").attr("role", "status").style("color", "#b33").style("font-size", "0.9em").style("margin-top", "6px");
-  }
-  async main() {
-    this.config = this.state.config;
-    for (const method of ["sizeMethod", "gradientMethod"]) {
-      this.dom.methodSelects[method].property("value", this[method] || this.startOpt);
-    }
-    await this.renderSections("row", this.config.rowSections || []);
-    await this.renderSections("column", this.config.colSections || []);
-    const error = this.getValidationError();
-    const enabled = !error;
-    this.dom.submit.property("disabled", !enabled).style("cursor", enabled ? "pointer" : "default");
-    this.dom.validationMessage.text(error || "");
-  }
-  async renderSections(type, sections) {
-    const holder = this.dom.sectionHolders[type];
-    for (const [key, view] of this.sectionViews) {
-      const idx = Number(key.slice(type.length + 1));
-      if (key.startsWith(`${type}:`) && idx >= sections.length) {
-        view.termdb?.destroy?.();
-        view.holder.remove();
-        this.sectionViews.delete(key);
-      }
-    }
-    for (const [idx, section] of sections.entries()) {
-      const key = `${type}:${idx}`;
-      let view = this.sectionViews.get(key);
-      if (!view) {
-        view = await this.createSectionView(holder, type, idx, section);
-        this.sectionViews.set(key, view);
-      }
-      const hasName = !!(section.name || "").trim();
-      const isSubmitted = !!section.terms?.length;
-      view.nameLabel.style("display", isSubmitted ? "none" : "");
-      view.nameInput.property("value", section.name).attr("aria-invalid", hasName ? null : "true").attr("title", hasName ? null : "A section name is required").style("border-color", hasName ? null : "#c33").style("display", isSubmitted ? "none" : "");
-      view.displayName.style("display", isSubmitted ? "" : "none").text(section.name);
-      view.editButton.style("display", isSubmitted ? "" : "none");
-      view.holder.select('[data-testid="sjpp-agg-matrix-section-term-list"]').selectAll("div").data(section.terms || [], (term) => term.id || term.name).join("div").attr("data-testid", "sjpp-agg-matrix-section-term").style("margin", "5px").text((term) => term.name || term.id);
-      view.termsHolder.style("display", section.terms?.length ? "none" : "");
-      holder.node().appendChild(view.holder.node());
-    }
-  }
-  async createSectionView(holder, type, idx, section) {
-    const sectionHolder = holder.append("div").attr("data-testid", `sjpp-agg-matrix-${type}-section`).style("margin", "10px 0").style("padding", "10px").style("border", "1px solid #eee").style("border-radius", "5px");
-    const header = sectionHolder.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
-    const nameId = `sjpp-agg-matrix-${type}-section-name-${this.nextSectionViewId++}`;
-    const nameLabel = header.append("label").attr("for", nameId).text("Section name *:");
-    const nameInput = header.append("input").attr("id", nameId).attr("data-testid", "sjpp-agg-matrix-section-name-input").attr("type", "text").attr("required", true).attr("aria-required", "true").attr("placeholder", "Required").on("change", (event) => this.updateSection(type, idx, { name: event.target.value }));
-    const displayName = header.append("strong").style("display", "none");
-    const editButton = header.append("button").attr("type", "button").attr("data-testid", "sjpp-agg-matrix-edit-section-btn").attr("aria-label", `Edit ${type} section`).style("display", "none").style("border", "none").style("background", "transparent").style("padding", "3px");
-    icons.pencil(editButton, {
-      title: `Edit ${type} section`,
-      handler: () => this.editSection(type, idx)
-    });
-    header.append("button").attr("type", "button").attr("data-testid", "sjpp-agg-matrix-remove-section-btn").attr("aria-label", `Remove ${type} section`).text("\xD7").on("click", () => this.removeSection(type, idx));
-    sectionHolder.append("div").attr("data-testid", "sjpp-agg-matrix-section-term-list").style("margin-left", "10px");
-    const termsHolder = sectionHolder.append("div").attr("data-testid", "sjpp-agg-matrix-section-terms");
-    const view = {
-      holder: sectionHolder,
-      nameLabel,
-      nameInput,
-      displayName,
-      editButton,
-      termsHolder
-    };
-    view.termdb = await appInit({
-      holder: termsHolder,
-      vocabApi: this.app.vocabApi,
-      state: {
-        activeCohort: this.state.activeCohort,
-        selectedTerms: section.terms || [],
-        nav: { header_mode: "search_only" },
-        tree: { usecase: { target: "aggregateMatrix" } }
-      },
-      tree: {
-        //TODO: Cannot disable terms previously used in current tree set up. 
-        //Need to investigate why or come up with work around. 
-        minTermsToSubmit: 1,
-        submit_lst: (terms) => {
-          const name = nameInput.property("value").trim();
-          if (!name) {
-            nameInput.node().reportValidity();
-            return;
-          }
-          this.updateSection(type, idx, { name, terms });
-        }
-      }
-    });
-    return view;
-  }
-  addSection(type) {
-    const key = type === "row" ? "rowSections" : "colSections";
-    const sections = structuredClone(this.config[key] || []);
-    sections.push({ name: "", terms: [] });
-    this.editConfig({ [key]: sections });
-  }
-  updateSection(type, idx, edits) {
-    const key = type === "row" ? "rowSections" : "colSections";
-    const sections = structuredClone(this.config[key] || []);
-    const section = sections[idx];
-    if (!section) return;
-    Object.assign(section, edits);
-    this.editConfig({ [key]: sections });
-  }
-  editSection(type, idx) {
-    this.updateSection(type, idx, { terms: [] });
-  }
-  removeSection(type, idx) {
-    const key = type === "row" ? "rowSections" : "colSections";
-    const sections = structuredClone(this.config[key] || []);
-    sections.splice(idx, 1);
-    this.destroySectionViews(type);
-    this.editConfig({ [key]: sections });
-  }
-  destroySectionViews(type) {
-    for (const [key, view] of this.sectionViews) {
-      if (!key.startsWith(`${type}:`)) continue;
-      view.termdb?.destroy?.();
-      view.holder.remove();
-      this.sectionViews.delete(key);
-    }
-  }
-  editConfig(config) {
-    this.app.dispatch({ type: "plot_edit", id: this.id, config });
-  }
-  getAggregateMatrixConfig() {
-    const toAxis = (sections) => Object.fromEntries(
-      sections.map((section) => [
-        section.name.trim(),
-        section.terms.map((term) => structuredClone(term))
-      ])
-    );
-    return {
-      chartType: "aggregateMatrix",
-      rows: toAxis(this.config.rowSections || []),
-      columns: toAxis(this.config.colSections || []),
-      settings: {
-        aggregateMatrix: {
-          sizeMethod: this.sizeMethod,
-          gradientMethod: this.gradientMethod
-        }
-      }
-    };
-  }
-  getValidationError() {
-    for (const sections of [this.config.rowSections || [], this.config.colSections || []]) {
-      const names = sections.map((section) => (section.name || "").trim());
-      if (names.some((name) => !name)) return "Every section requires a name.";
-      if (new Set(names).size !== names.length) return "Section names must be unique within each axis.";
-    }
-    try {
-      validatePlotConfig(this.getAggregateMatrixConfig());
-      return "";
-    } catch (error) {
-      return error.message || String(error);
-    }
-  }
-  submit() {
-    const config = this.getAggregateMatrixConfig();
-    validatePlotConfig(config);
-    this.app.dispatch({
-      type: "app_refresh",
-      subactions: [
-        {
-          type: "plot_create",
-          config
-        },
-        { type: "plot_delete", id: this.id }
-      ]
-    });
-  }
-};
-var AggMatrixInputInit = getCompInit(AggMatrixInput);
-var componentInit = AggMatrixInputInit;
-async function getPlotConfig(opts) {
-  const config = {
-    chartType,
-    hidePlotFilter: true,
-    rowSections: [],
-    colSections: []
-  };
-  return copyMerge(config, opts);
-}
-export {
-  AggMatrixInputInit,
-  componentInit,
-  getPlotConfig
-};
-//# sourceMappingURL=AggMatrixInput-FH6WRTLP.js.map

package/dist/AggregateMatrix-MGEX5AVF.js

@@ -1,41 +0,0 @@
-import {
-  AggregateMatrix,
-  aggMatrixInit,
-  componentInit,
-  getPlotConfig,
-  validatePlotConfig
-} from "./chunk-LXTBOUBG.js";
-import "./chunk-7RX5UEF3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-L42F5J5C.js";
-import "./chunk-HKQDZKSF.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-FUSTNOQZ.js";
-import "./chunk-VSPUFGDX.js";
-import "./chunk-WVPFLPWB.js";
-import "./chunk-S5SOLLGM.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-D6G64XPJ.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-YLJOZP4P.js";
-import "./chunk-HDTFYTEL.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  AggregateMatrix,
-  aggMatrixInit,
-  componentInit,
-  getPlotConfig,
-  validatePlotConfig
-};
-//# sourceMappingURL=AggregateMatrix-MGEX5AVF.js.map