@sjcrh/proteinpaint-client 2.191.3 → 2.191.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (888) hide show
  1. package/dist/2dmaf-Z3D2M3FB.js +1373 -0
  2. package/dist/AIProjectAdmin-2OQOQXH4.js +956 -0
  3. package/dist/AppHeader-PXLGVCVS.js +835 -0
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  5. package/dist/CorrelationVolcano-RO6CFLZA.js +619 -0
  6. package/dist/DE-CCA5SBJG.js +95 -0
  7. package/dist/DEinput-MRUQW6X6.js +301 -0
  8. package/dist/DifferentialAnalysis-5YQQLJKR.js +245 -0
  9. package/dist/Disco-4FTOJBLG.js +3237 -0
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  159. package/dist/dnaMethylation-WGJMJL5B.js +38 -0
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  813. /package/dist/{plot.disco-BLNU4I6Q.js.map → plot.disco-OUE4RFHL.js.map} +0 -0
  814. /package/dist/{plot.dzi-FKWY6K5Q.js.map → plot.dzi-T3GPUH36.js.map} +0 -0
  815. /package/dist/{plot.ssgq-3GTTOOMK.js.map → plot.ssgq-WJHGMXW5.js.map} +0 -0
  816. /package/dist/{plot.vaf2cov-UAI64HYN.js.map → plot.vaf2cov-NGD5PCV4.js.map} +0 -0
  817. /package/dist/{plot.wsi-QJ52IJXL.js.map → plot.wsi-2MU5BDG3.js.map} +0 -0
  818. /package/dist/{polar2-6S4IHKK4.js.map → polar2-YCWPBPFU.js.map} +0 -0
  819. /package/dist/{profileForms-WXWHZ56N.js.map → profileForms-OV3I6RK7.js.map} +0 -0
  820. /package/dist/{profilePlot-K7ICCFQ3.js.map → profilePlot-OMVO3K4H.js.map} +0 -0
  821. /package/dist/{proteinView-ALZTEKTC.js.map → proteinView-OAR2RC6U.js.map} +0 -0
  822. /package/dist/{qualitative-QMPO7EY6.js.map → qualitative-MEYBRUC6.js.map} +0 -0
  823. /package/dist/{radar2-LDAFJHSI.js.map → radar2-KREAMGVV.js.map} +0 -0
  824. /package/dist/{radarFacility2-3TX3U243.js.map → radarFacility2-DBPEV7VC.js.map} +0 -0
  825. /package/dist/{regression-DUUCJOFW.js.map → regression-ZPDPLI6G.js.map} +0 -0
  826. /package/dist/{regression.inputs-B6SFFVED.js.map → regression.inputs-QOSBAGL6.js.map} +0 -0
  827. /package/dist/{regression.inputs.term-P5NHX7ME.js.map → regression.inputs.term-HMUMPY7X.js.map} +0 -0
  828. /package/dist/{regression.inputs.values.table-MVPP5VAK.js.map → regression.inputs.values.table-VMCTZHLG.js.map} +0 -0
  829. /package/dist/{regression.integration.spec-T7VH46WO.js.map → regression.integration.spec-RP74JTAA.js.map} +0 -0
  830. /package/dist/{regression.results-QEP4T6JO.js.map → regression.results-5XC6M67C.js.map} +0 -0
  831. /package/dist/{regression.spec-BTBCBKMF.js.map → regression.spec-EZYM24J7.js.map} +0 -0
  832. /package/dist/{report-WYCH4DJX.js.map → report-ZOVQCOGQ.js.map} +0 -0
  833. /package/dist/{sampleScatter.spec-LC6K22FF.js.map → sampleScatter.spec-CD52FEOC.js.map} +0 -0
  834. /package/dist/{sampleView-V3JYDTRA.js.map → sampleView-SVTLSWRG.js.map} +0 -0
  835. /package/dist/{samplelst-JO7UROYA.js.map → samplelst-HXF5POJD.js.map} +0 -0
  836. /package/dist/{samplematrix-6526IJRO.js.map → samplematrix-NYDAH74I.js.map} +0 -0
  837. /package/dist/{sc-EUC7G5OV.js.map → sc-JIDT4W4K.js.map} +0 -0
  838. /package/dist/{scatter-UMK37C4M.js.map → scatter-WNRTPSEE.js.map} +0 -0
  839. /package/dist/{scatter.integration.spec-BTOB6Y4H.js.map → scatter.integration.spec-3EYTPY5B.js.map} +0 -0
  840. /package/dist/{selectGenomeWithTklst-JNEOHP4V.js.map → selectGenomeWithTklst-OSB7B6L3.js.map} +0 -0
  841. /package/dist/{singleCellCellType-ZDMKPQ2Q.js.map → singleCellCellType-3BH7LWQ6.js.map} +0 -0
  842. /package/dist/{singleCellCellType.unit.spec-BKGRNHYP.js.map → singleCellCellType.unit.spec-RU4RJXFF.js.map} +0 -0
  843. /package/dist/{singleCellGeneExpression-J5KFX7TD.js.map → singleCellGeneExpression-3UA4YER7.js.map} +0 -0
  844. /package/dist/{singleCellGeneExpression.unit.spec-6F5YFV7K.js.map → singleCellGeneExpression.unit.spec-4ZTBG37H.js.map} +0 -0
  845. /package/dist/{singleCellPlot-VA6SWR5L.js.map → singleCellPlot-ZUAWK5RE.js.map} +0 -0
  846. /package/dist/{singlecell-A4OHBVJD.js.map → singlecell-BGJZB7MF.js.map} +0 -0
  847. /package/dist/{singlecell-2CWHJR2P.js.map → singlecell-RO3BL5OO.js.map} +0 -0
  848. /package/dist/{snp-PJNNPOSF.js.map → snp-HD7VQKBR.js.map} +0 -0
  849. /package/dist/{snp.unit.spec-JKZCYPNA.js.map → snp.unit.spec-ISXCLMWW.js.map} +0 -0
  850. /package/dist/{snplocus-YY6UIS2R.js.map → snplocus-IL5Z4XWV.js.map} +0 -0
  851. /package/dist/{spliceevent.a53ss.diagram-CEFGK2LA.js.map → spliceevent.a53ss.diagram-LLJSPV7M.js.map} +0 -0
  852. /package/dist/{spliceevent.exonskip.diagram-A24TZTQ7.js.map → spliceevent.exonskip.diagram-LAOIOIST.js.map} +0 -0
  853. /package/dist/{spliceevent.noeventdiagram-USD42ZZB.js.map → spliceevent.noeventdiagram-MVA7Q3HT.js.map} +0 -0
  854. /package/dist/{ssGSEA-A5X56E7U.js.map → ssGSEA-7T6S3DSE.js.map} +0 -0
  855. /package/dist/{ssGSEA.unit.spec-6WMGKWNI.js.map → ssGSEA.unit.spec-XJ3W4NWX.js.map} +0 -0
  856. /package/dist/{summarizeCnvGeneexp-FZJL4Q7O.js.map → summarizeCnvGeneexp-RRP6JUV6.js.map} +0 -0
  857. /package/dist/{summarizeGeneexpSurvival-LRJZBHRW.js.map → summarizeGeneexpSurvival-AFLHDD6Q.js.map} +0 -0
  858. /package/dist/{summarizeMutationCnv-L64CVMHI.js.map → summarizeMutationCnv-NABUYHMX.js.map} +0 -0
  859. /package/dist/{summarizeMutationDiagnosis-S55CKGBO.js.map → summarizeMutationDiagnosis-2LQ7JU3K.js.map} +0 -0
  860. /package/dist/{summarizeMutationSurvival-AM7BZVDP.js.map → summarizeMutationSurvival-3WBT5TXG.js.map} +0 -0
  861. /package/dist/{summary-ANZTET2T.js.map → summary-FRDKOFXW.js.map} +0 -0
  862. /package/dist/{summary.integration.spec-TW3CJTDA.js.map → summary.integration.spec-ZLRIA7G2.js.map} +0 -0
  863. /package/dist/{summaryInput-3JHKZU62.js.map → summaryInput-4JO6MHP4.js.map} +0 -0
  864. /package/dist/{sunburst-ABDTE22P.js.map → sunburst-DRCVSC2X.js.map} +0 -0
  865. /package/dist/{survival-HROP7OR7.js.map → survival-AK75COPY.js.map} +0 -0
  866. /package/dist/{survival-KZDESA36.js.map → survival-IF5NI3A6.js.map} +0 -0
  867. /package/dist/{survival.integration.spec-CMZTALBF.js.map → survival.integration.spec-7IWBTPJG.js.map} +0 -0
  868. /package/dist/{svgraph-TLRXKVWQ.js.map → svgraph-QBDF2SLB.js.map} +0 -0
  869. /package/dist/{svmr-R4QOXWQW.js.map → svmr-O4GJJUT2.js.map} +0 -0
  870. /package/dist/{table-QM3RZQ5R.js.map → table-FQAIXKLE.js.map} +0 -0
  871. /package/dist/{termCollection-WVYJHPIH.js.map → termCollection-GMDDL3L7.js.map} +0 -0
  872. /package/dist/{termCollection-B2A3MSCD.js.map → termCollection-ZO5PZ7E3.js.map} +0 -0
  873. /package/dist/{termCollection.unit.spec-TCPEEZHW.js.map → termCollection.unit.spec-5JBCTXHX.js.map} +0 -0
  874. /package/dist/{tk-DGFFDV7C.js.map → tk-GJX23IV7.js.map} +0 -0
  875. /package/dist/{tp.ui-BEESUHHF.js.map → tp.ui-T7FVMTGQ.js.map} +0 -0
  876. /package/dist/{tvs.dt-UZW3L4MO.js.map → tvs.dt-X7L7NSU6.js.map} +0 -0
  877. /package/dist/{tvs.dtcnv.categorical-OH5NXCDN.js.map → tvs.dtcnv.categorical-73G2V6CH.js.map} +0 -0
  878. /package/dist/{tvs.dtcnv.continuous-VWWTWAX2.js.map → tvs.dtcnv.continuous-DWFJL3X7.js.map} +0 -0
  879. /package/dist/{tvs.dtfusion-YKYYCDJN.js.map → tvs.dtfusion-HQADHCSV.js.map} +0 -0
  880. /package/dist/{tvs.dtsnvindel-Y3WAHLKK.js.map → tvs.dtsnvindel-PY5OBMGW.js.map} +0 -0
  881. /package/dist/{tvs.dtsv-UFLR2XRY.js.map → tvs.dtsv-OTBEEWSW.js.map} +0 -0
  882. /package/dist/{tvs.samplelst-BPWZHD62.js.map → tvs.samplelst-LCXSU5MG.js.map} +0 -0
  883. /package/dist/{tvs.termCollection-JLA3JQFX.js.map → tvs.termCollection-L527XN4X.js.map} +0 -0
  884. /package/dist/{violin-TFNQIETS.js.map → violin-6VKRUQV3.js.map} +0 -0
  885. /package/dist/{violin.integration.spec-XKNZQVN7.js.map → violin.integration.spec-RJATDLQH.js.map} +0 -0
  886. /package/dist/{violin.interactivity-R2EYNWI6.js.map → violin.interactivity-SKF5H7MN.js.map} +0 -0
  887. /package/dist/{violin.renderer-5WA4YLGB.js.map → violin.renderer-GB4TPX3B.js.map} +0 -0
  888. /package/dist/{vocabulary-D2XUEKI6.js.map → vocabulary-D3W44IWE.js.map} +0 -0
@@ -0,0 +1,226 @@
1
+ import {
2
+ getDefaultProfilePlotSettings,
3
+ getProfilePlotConfig,
4
+ profilePlot
5
+ } from "./chunk-P3IENRWJ.js";
6
+ import {
7
+ fillTwLst,
8
+ renderTable
9
+ } from "./chunk-SA7APTJR.js";
10
+ import "./chunk-HJ6L54YS.js";
11
+ import "./chunk-LSEFWW72.js";
12
+ import "./chunk-SKREEF3H.js";
13
+ import "./chunk-HYOEWQ5P.js";
14
+ import "./chunk-HBW42TDT.js";
15
+ import "./chunk-G6O3URDN.js";
16
+ import "./chunk-FN5XPUPH.js";
17
+ import "./chunk-IIT367QZ.js";
18
+ import "./chunk-RZGEKL77.js";
19
+ import "./chunk-UI7OCM2A.js";
20
+ import "./chunk-YZK37YCC.js";
21
+ import {
22
+ dofetch3
23
+ } from "./chunk-7EMWHCVW.js";
24
+ import "./chunk-7IYJZZQI.js";
25
+ import {
26
+ copyMerge,
27
+ getCompInit
28
+ } from "./chunk-M3J4MINX.js";
29
+ import "./chunk-PF4DSFDR.js";
30
+ import "./chunk-QH6W3NVF.js";
31
+ import "./chunk-NOEAT6CX.js";
32
+ import "./chunk-4UWS5Y3N.js";
33
+ import "./chunk-DD4R5P6W.js";
34
+ import "./chunk-JNITUVXP.js";
35
+ import {
36
+ arc_default
37
+ } from "./chunk-KSGA62R2.js";
38
+ import "./chunk-LOZEKOES.js";
39
+ import "./chunk-TOU7EVFQ.js";
40
+ import "./chunk-OAWQ6LOO.js";
41
+ import "./chunk-TLT4YIG3.js";
42
+ import "./chunk-KYBIQBXE.js";
43
+ import "./chunk-I6Y4O3RR.js";
44
+ import "./chunk-OMR2DT66.js";
45
+ import "./chunk-DQC5FFGV.js";
46
+ import "./chunk-HFNDKYVF.js";
47
+
48
+ // plots/profile/polar2.ts
49
+ var ProfilePolar2 = class extends profilePlot {
50
+ constructor(opts) {
51
+ super(opts, "profilePolar2");
52
+ this.radius = 250;
53
+ this.arcGenerator = arc_default().innerRadius(0);
54
+ }
55
+ static {
56
+ this.type = "profilePolar2";
57
+ }
58
+ async init(appState) {
59
+ await super.init(appState);
60
+ const config = appState.plots.find((p) => p.id === this.id);
61
+ this.scoreTerms = config.terms;
62
+ this.angle = Math.PI * 2 / config.terms.length;
63
+ }
64
+ async main() {
65
+ await super.main();
66
+ await this.setControls();
67
+ this.plot();
68
+ }
69
+ /**
70
+ * Fetches aggregated module scores from termdb/profilePolar2Scores after
71
+ * super.setControls() builds the filter UI and sets this.filter. The server
72
+ * derives the facility term from the request term IDs and returns the median
73
+ * percentage across all eligible sites.
74
+ */
75
+ async setControls(additionalInputs = []) {
76
+ await super.setControls(additionalInputs);
77
+ this.data = await this.fetchAggregatedScores();
78
+ if (this.data && "error" in this.data) throw this.data.error;
79
+ }
80
+ async fetchAggregatedScores() {
81
+ return dofetch3("termdb/profilePolar2Scores", {
82
+ body: {
83
+ genome: this.state.vocab.genome,
84
+ dslabel: this.state.vocab.dslabel,
85
+ scoreTerms: this.scoreTerms.map((t) => ({
86
+ score: { term: { id: t.score.term.id }, q: t.score.q },
87
+ maxScore: typeof t.maxScore === "number" ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }
88
+ })),
89
+ filterByUserSites: this.settings?.filterByUserSites,
90
+ filter: this.filter
91
+ }
92
+ });
93
+ }
94
+ onMouseOut(event) {
95
+ const target = event.target;
96
+ if (target.tagName === "path") {
97
+ target.setAttribute("stroke", "white");
98
+ if (target.getAttribute("stroke-opacity") === "0") {
99
+ target.setAttribute("stroke-opacity", "1");
100
+ }
101
+ }
102
+ this.tip.hide();
103
+ }
104
+ onMouseOver(event) {
105
+ const target = event.target;
106
+ if (target.tagName === "path") {
107
+ target.setAttribute("stroke-opacity", "0");
108
+ const d = target.__data__;
109
+ const menu = this.tip.clear();
110
+ const percentage = this.getPercentage(d);
111
+ const label = percentage == null ? "N/A" : `${percentage}%`;
112
+ menu.d.text(`${d.module} ${label}`);
113
+ menu.show(event.clientX, event.clientY, true, true);
114
+ } else {
115
+ this.onMouseOut(event);
116
+ }
117
+ }
118
+ plot() {
119
+ this.createSvg();
120
+ const rows = this.drawArcs();
121
+ this.drawGrid();
122
+ this.drawTable(rows);
123
+ this.drawLegend();
124
+ }
125
+ createSvg() {
126
+ const width = this.isComparison ? 800 : 1e3, height = 600;
127
+ this.dom.svg = this.dom.plotDiv.append("div").style("display", "inline-block").append("svg").attr("width", width).attr("height", height);
128
+ this.dom.tableDiv = this.dom.plotDiv.append("div").attr("data-testid", "sjpp-profilePolar2-data-table").style("display", "inline-block").style("vertical-align", "top").style("margin", "45px 20px");
129
+ this.dom.svg.append("text").attr("transform", `translate(130, 40)`).attr("font-weight", "bold").text(this.config.title);
130
+ const x = 280, y = 330;
131
+ this.polarG = this.dom.svg.append("g").attr("transform", `translate(${x},${y})`);
132
+ this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profilePolar2-legend").attr("transform", `translate(${x + 280}, ${y - 200})`);
133
+ this.filterG = this.dom.svg.append("g").attr("transform", `translate(${x + 280},${y})`);
134
+ }
135
+ drawGrid() {
136
+ for (let i = 0; i <= 10; i++) this.drawGridCircle(i * 10);
137
+ this.drawGradeCircle(50, "C");
138
+ this.drawGradeCircle(75, "B");
139
+ this.drawGradeCircle(100, "A");
140
+ for (let i = 0; i <= 10; i++) {
141
+ const percent = i * 10;
142
+ this.polarG.append("text").attr("transform", `translate(-10, ${-percent / 100 * this.radius + 5})`).attr("text-anchor", "end").style("font-size", "0.8rem").text(`${percent}%`).attr("pointer-events", "none");
143
+ }
144
+ }
145
+ drawGridCircle(percent) {
146
+ const circle = this.polarG.append("circle").attr("r", percent / 100 * this.radius).style("fill", "none").style("opacity", "0.5");
147
+ if (percent != 50) circle.style("stroke", "#aaa");
148
+ }
149
+ drawGradeCircle(percent, label) {
150
+ const circle = this.polarG.append("circle").attr("r", percent / 100 * this.radius).style("fill", "none").style("opacity", "0.5");
151
+ if (percent != 100) circle.style("stroke-dasharray", "5, 5").style("stroke-width", "2").style("stroke", "black");
152
+ this.polarG.append("text").attr("transform", `translate(15, ${-(percent / 100 - 0.125) * this.radius + 10})`).attr("text-anchor", "middle").text(label).style("font-weight", "bold").style("font-size", "24px").attr("pointer-events", "none");
153
+ }
154
+ /** Draws the arc slices and returns table rows for drawTable(). */
155
+ drawArcs() {
156
+ const rows = [];
157
+ let i = 0;
158
+ for (const d of this.config.terms) {
159
+ d.i = i;
160
+ const color = d.score.term.color;
161
+ const percentage = this.getPercentage(d);
162
+ rows.push([{ color, disabled: true }, { value: d.module }, { value: percentage ?? "N/A" }]);
163
+ this.polarG.append("g").append("path").datum(d).attr("fill", color).attr("stroke", "white").attr(
164
+ "d",
165
+ this.arcGenerator({
166
+ outerRadius: percentage / 100 * this.radius,
167
+ startAngle: i * this.angle,
168
+ endAngle: (i + 1) * this.angle
169
+ })
170
+ ).on("click", (event) => this.onMouseOver(event));
171
+ i++;
172
+ }
173
+ return rows;
174
+ }
175
+ drawTable(rows) {
176
+ const columns = [{ label: "Color" }, { label: "Module" }, { label: "Score", align: "center" }];
177
+ this.dom.tableDiv.selectAll("*").remove();
178
+ if (!this.isComparison)
179
+ renderTable({
180
+ rows,
181
+ columns,
182
+ div: this.dom.tableDiv,
183
+ showLines: true,
184
+ resize: true,
185
+ maxHeight: "50vh"
186
+ });
187
+ }
188
+ drawLegend() {
189
+ if (!this.isComparison) {
190
+ this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Overall Score").attr("transform", `translate(0, -5)`);
191
+ this.addLegendItem("A", "More than 75% of possible scorable items", 1);
192
+ this.addLegendItem("B", "50-75% of possible scorable items", 2);
193
+ this.addLegendItem("C", "Less than 50% of possible scorable items", 3);
194
+ }
195
+ this.addFilterLegend();
196
+ }
197
+ };
198
+ async function getPlotConfig(opts, app, _activeCohort) {
199
+ try {
200
+ const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
201
+ const defaults = await getProfilePlotConfig(activeCohort, app, opts);
202
+ if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profilePolar2";
203
+ const settings = getDefaultProfilePlotSettings();
204
+ defaults.settings = { profilePolar2: settings };
205
+ const config = copyMerge(structuredClone(defaults), opts);
206
+ config.settings.controls = { isOpen: false };
207
+ const twlst = [];
208
+ for (const data of config.terms) {
209
+ data.score.q = { mode: "continuous" };
210
+ data.maxScore.q = { mode: "continuous" };
211
+ twlst.push(data.score, data.maxScore);
212
+ }
213
+ await fillTwLst(twlst, app.vocabApi);
214
+ return config;
215
+ } catch (e) {
216
+ throw `${e} [profilePolar2 getPlotConfig()]`;
217
+ }
218
+ }
219
+ var profilePolar2Init = getCompInit(ProfilePolar2);
220
+ var componentInit = profilePolar2Init;
221
+ export {
222
+ componentInit,
223
+ getPlotConfig,
224
+ profilePolar2Init
225
+ };
226
+ //# sourceMappingURL=polar2-YCWPBPFU.js.map
@@ -0,0 +1,441 @@
1
+ import {
2
+ getDefaultProfilePlotSettings,
3
+ getProfilePlotConfig,
4
+ profilePlot
5
+ } from "./chunk-P3IENRWJ.js";
6
+ import {
7
+ fillTermWrapper,
8
+ fillTwLst
9
+ } from "./chunk-SA7APTJR.js";
10
+ import "./chunk-HJ6L54YS.js";
11
+ import "./chunk-LSEFWW72.js";
12
+ import "./chunk-SKREEF3H.js";
13
+ import "./chunk-HYOEWQ5P.js";
14
+ import {
15
+ Tabs
16
+ } from "./chunk-HBW42TDT.js";
17
+ import "./chunk-G6O3URDN.js";
18
+ import "./chunk-FN5XPUPH.js";
19
+ import "./chunk-IIT367QZ.js";
20
+ import "./chunk-RZGEKL77.js";
21
+ import "./chunk-UI7OCM2A.js";
22
+ import "./chunk-YZK37YCC.js";
23
+ import "./chunk-7EMWHCVW.js";
24
+ import "./chunk-7IYJZZQI.js";
25
+ import {
26
+ copyMerge,
27
+ getCompInit
28
+ } from "./chunk-M3J4MINX.js";
29
+ import "./chunk-PF4DSFDR.js";
30
+ import "./chunk-QH6W3NVF.js";
31
+ import "./chunk-NOEAT6CX.js";
32
+ import "./chunk-4UWS5Y3N.js";
33
+ import "./chunk-DD4R5P6W.js";
34
+ import "./chunk-JNITUVXP.js";
35
+ import "./chunk-KSGA62R2.js";
36
+ import {
37
+ axisBottom,
38
+ axisTop
39
+ } from "./chunk-LOZEKOES.js";
40
+ import "./chunk-TOU7EVFQ.js";
41
+ import {
42
+ linear
43
+ } from "./chunk-OAWQ6LOO.js";
44
+ import {
45
+ roundValueAuto
46
+ } from "./chunk-TLT4YIG3.js";
47
+ import "./chunk-KYBIQBXE.js";
48
+ import "./chunk-I6Y4O3RR.js";
49
+ import "./chunk-OMR2DT66.js";
50
+ import "./chunk-DQC5FFGV.js";
51
+ import "./chunk-HFNDKYVF.js";
52
+
53
+ // plots/profile/profileForms.ts
54
+ var YES_NO_TAB = "Yes/No Barchart";
55
+ var IMPRESSIONS_TAB = "Impressions";
56
+ var LIKERT_TAB = "Likert Scale";
57
+ var profileForms = class extends profilePlot {
58
+ static {
59
+ this.type = "profileForms";
60
+ }
61
+ constructor(opts) {
62
+ super(opts, "profileForms");
63
+ this.opts = opts;
64
+ this.id2SCTW = {};
65
+ }
66
+ async init(appState) {
67
+ super.init(appState);
68
+ const config = structuredClone(appState.plots.find((p) => p.id === this.id));
69
+ this.twLst = await this.app.vocabApi.getMultivalueTWs({ parent_id: config.tw.term.id });
70
+ const settings = config.settings.profileForms;
71
+ this.tabs = [];
72
+ for (const plot of config.options) {
73
+ const tws = this.twLst.filter((tw) => tw.term.subtype == plot.subtype);
74
+ if (!tws.length) continue;
75
+ const tab = {
76
+ label: plot.name,
77
+ callback: () => {
78
+ this.app.dispatch({ type: "plot_edit", id: this.id, config: { activeTab: plot.name } });
79
+ },
80
+ active: false
81
+ };
82
+ if (plot.name == config.activeTab) tab.active = true;
83
+ if (plot.hasSC) {
84
+ this.id2SCTW[plot.name] = {};
85
+ for (const tw of this.twLst) {
86
+ if (tw.term.subtype != plot.subtype) continue;
87
+ const scTermId = tw.term.id.replace(/^POC/, "");
88
+ const scTW = { id: scTermId };
89
+ await fillTermWrapper(scTW, this.app.vocabApi);
90
+ this.id2SCTW[plot.name][scTermId] = scTW;
91
+ }
92
+ this.twLst.push(...Object.values(this.id2SCTW[plot.name]));
93
+ }
94
+ this.tabs.push(tab);
95
+ }
96
+ const rightDiv = this.dom.rightDiv;
97
+ const topDiv = rightDiv.append("div");
98
+ const domainDiv = topDiv.append("div").style("padding-bottom", "10px").style("font-weight", "bold");
99
+ const headerDiv = rightDiv.append("div").style("padding-bottom", "10px");
100
+ if (this.tabs.length > 1)
101
+ await new Tabs({
102
+ holder: topDiv,
103
+ tabsPosition: "horizontal",
104
+ tabs: this.tabs
105
+ }).main();
106
+ const shift = 690;
107
+ const shiftTop = 50;
108
+ const width = settings.svgw + shift + 500;
109
+ const svg = rightDiv.style("padding", "20px").append("svg").attr("width", width);
110
+ svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", "gray");
111
+ this.shiftTop = shiftTop;
112
+ this.shift = shift;
113
+ const mainG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
114
+ const gridG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
115
+ this.filterG = svg.append("g").attr("transform", `translate(${shift + settings.svgw + 60}, ${shiftTop + 40})`);
116
+ this.legendG = svg.append("g");
117
+ const xAxisG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop / 2})`);
118
+ this.dom = copyMerge(this.dom, {
119
+ svg,
120
+ headerDiv,
121
+ mainG,
122
+ gridG,
123
+ legendG: this.legendG,
124
+ xAxisG,
125
+ domainDiv
126
+ });
127
+ }
128
+ async main() {
129
+ super.main();
130
+ if (this.tabs.length == 0) return;
131
+ const activeTab = this.state.config.activeTab || this.tabs[0].label;
132
+ this.activePlot = this.state.config.options.find((p) => p.name == activeTab);
133
+ this.scoreTerms = this.twLst.filter((tw) => tw.term.subtype == this.activePlot.subtype);
134
+ if (this.activePlot.hasSC) {
135
+ this.scScoreTerms = Object.values(this.id2SCTW[this.activePlot.name]);
136
+ }
137
+ const parents = this.config.tw.term.id.split("__");
138
+ this.module = parents[1];
139
+ const domain = parents.slice(1).join(" / ");
140
+ this.dom.domainDiv.text(domain);
141
+ this.categories = /* @__PURE__ */ new Set();
142
+ this.dom.mainG.selectAll("*").remove();
143
+ this.dom.gridG.selectAll("*").remove();
144
+ this.dom.xAxisG.selectAll("*").remove();
145
+ this.dom.legendG.selectAll("*").remove();
146
+ await this.setControls();
147
+ this.renderPlot();
148
+ this.filterG.selectAll("*").remove();
149
+ this.addFilterLegend();
150
+ }
151
+ renderPlot() {
152
+ try {
153
+ this.dom.headerDiv.style("display", "none");
154
+ switch (this.activePlot.name) {
155
+ case IMPRESSIONS_TAB:
156
+ this.renderImpressions();
157
+ break;
158
+ case LIKERT_TAB:
159
+ this.renderLikert();
160
+ break;
161
+ case YES_NO_TAB:
162
+ this.renderYesNo();
163
+ }
164
+ } catch (e) {
165
+ console.error("Error rendering profile forms plot:", e);
166
+ throw e;
167
+ }
168
+ }
169
+ renderImpressions() {
170
+ }
171
+ renderLikert() {
172
+ this.dom.headerDiv.style("display", "block");
173
+ this.dom.headerDiv.selectAll("*").remove();
174
+ let y = 0;
175
+ const step = 30;
176
+ const height = (this.scoreTerms.length + 2) * step;
177
+ this.dom.svg.attr("height", height + 120);
178
+ this.categories = /* @__PURE__ */ new Set();
179
+ const labelPadding = 80;
180
+ const tempG = this.dom.svg.append("g").style("visibility", "hidden");
181
+ let maxLabelWidth = 0;
182
+ for (const tw of this.scoreTerms) {
183
+ if (tw.term.type != "multivalue") continue;
184
+ const text = getText(tw.term.details || tw.term.name);
185
+ const tempText = tempG.append("text").style("font-size", "0.85em").text(text);
186
+ const w = tempText.node().getBBox().width;
187
+ if (w > maxLabelWidth) maxLabelWidth = w;
188
+ }
189
+ tempG.remove();
190
+ const shift = maxLabelWidth + labelPadding;
191
+ this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
192
+ this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
193
+ this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
194
+ this.dom.svg.attr("width", shift + this.settings.svgw + 500);
195
+ this.shift = shift;
196
+ for (const tw of this.scoreTerms) {
197
+ if (tw.term.type != "multivalue") continue;
198
+ const dict = this.getPercentageDict(tw);
199
+ this.renderLikertBar(dict, y, 25, tw);
200
+ y += step;
201
+ }
202
+ y += step * 2;
203
+ const width = this.settings.svgw;
204
+ const posScale = linear().domain([0, 100]).range([shift, shift + width]);
205
+ const posAxisBottom = axisBottom(posScale).ticks(10).tickFormat((d) => d + "%");
206
+ const scaleG = this.dom.svg.append("g").attr("transform", `translate(0, ${y})`);
207
+ posAxisBottom(scaleG);
208
+ const likertLegendOrder = [
209
+ "I Don't Know",
210
+ "Do Not Know",
211
+ "No",
212
+ "Not Available",
213
+ "Not Applicable For My Role",
214
+ "Almost Never",
215
+ "Infrequently",
216
+ "Sometimes",
217
+ "Frequently",
218
+ "Almost Always"
219
+ ];
220
+ const catUpperSet = new Set([...this.categories].map((c) => c.toUpperCase()));
221
+ const orderedCategories = likertLegendOrder.filter((c) => catUpperSet.has(c.toUpperCase()));
222
+ const colorMap = this.state.termdbConfig.colorMap;
223
+ const legendG = this.dom.legendG.attr("transform", `translate(0, ${y + 50})`);
224
+ const rectSize = 14;
225
+ const rectTextGap = 5;
226
+ const itemGap = 12;
227
+ let x = 0;
228
+ for (const category of orderedCategories) {
229
+ const key = category.toUpperCase();
230
+ const color = colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][category];
231
+ const itemG = legendG.append("g").attr("transform", `translate(${x}, 0)`);
232
+ itemG.append("rect").attr("width", rectSize).attr("height", rectSize).attr("fill", color);
233
+ const label = itemG.append("text").attr("x", rectSize + rectTextGap).attr("y", rectSize / 2).attr("dominant-baseline", "central").style("font-size", "0.8em").text(category);
234
+ x += rectSize + rectTextGap + label.node().getBBox().width + itemGap;
235
+ }
236
+ }
237
+ renderYesNo() {
238
+ const step = 30;
239
+ const height = this.scoreTerms.length * step;
240
+ this.dom.svg.attr("height", height * 3 + 200);
241
+ const labelPadding = 50;
242
+ const tempG = this.dom.svg.append("g").style("visibility", "hidden");
243
+ let maxLabelWidth = 0;
244
+ for (const tw of this.scoreTerms) {
245
+ const text2 = getText(tw.term.name);
246
+ const tempText = tempG.append("text").style("font-size", "0.8em").text(text2);
247
+ const w = tempText.node().getBBox().width;
248
+ if (w > maxLabelWidth) maxLabelWidth = w;
249
+ }
250
+ tempG.remove();
251
+ const shift = maxLabelWidth + labelPadding;
252
+ this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
253
+ this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
254
+ this.dom.xAxisG.attr("transform", `translate(${shift}, ${this.shiftTop / 2})`);
255
+ this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
256
+ this.dom.svg.attr("width", shift + this.settings.svgw + 500);
257
+ this.shift = shift;
258
+ this.xAxisScale = linear().domain([0, 100]).range([0, this.settings.svgw]);
259
+ this.dom.xAxisG.call(axisTop(this.xAxisScale));
260
+ let y = 0;
261
+ let showSCBar = false;
262
+ for (const tw of this.scoreTerms) {
263
+ const percents = this.getPercentageDict(tw);
264
+ const scTermId = tw.term.id.replace(/^POC/, "");
265
+ const scTW = this.id2SCTW[this.activePlot.name][scTermId];
266
+ const scPercents = this.getPercentageDict(scTW);
267
+ const scPercentKeys = Object.keys(scPercents).filter((k) => scPercents[k] > 0).map((k) => scTW.term.values?.[k]?.label || k);
268
+ const scTotal = Object.values(scPercents).reduce((a, b) => a + b, 0);
269
+ showSCBar = scTotal > 1;
270
+ this.renderYesNoBar(percents, y, step, scTotal == 1 ? scPercentKeys : []);
271
+ if (showSCBar) {
272
+ y += step + 10;
273
+ this.renderYesNoBar(scPercents, y, step, []);
274
+ this.dom.mainG.append("text").text("SC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", y + step * 0.6);
275
+ }
276
+ this.dom.mainG.append("text").text("POC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", showSCBar ? y - step + 0.35 * step : y + step * 0.6);
277
+ this.dom.mainG.append("text").attr("x", -this.shift).attr("y", showSCBar ? y : y + step / 2).text(getText(tw.term.name)).attr("font-size", "0.8em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
278
+ y += step + 40;
279
+ }
280
+ this.renderLines(y - 20);
281
+ if (showSCBar) this.dom.legendG.attr("transform", `translate(${550}, ${30 + this.settings.svgh})`);
282
+ else this.dom.legendG.attr("transform", `translate(${550}, ${this.settings.svgh * 0.8})`);
283
+ let x = 0;
284
+ for (const category of this.activePlot.categories) {
285
+ x += this.drawLegendRect(x, 0, category.name, this.dom.legendG, true);
286
+ }
287
+ let text = this.dom.legendG.append("text").attr("x", x + 80).attr("y", 18);
288
+ text.append("tspan").style("font-weight", "bold").text("SC:");
289
+ text.append("tspan").text("Site Coordinator");
290
+ text = this.dom.legendG.append("text").attr("x", x + 250).attr("y", 18);
291
+ text.append("tspan").style("font-weight", "bold").text("POC:");
292
+ text.append("tspan").text("Point of Care Staff");
293
+ }
294
+ onMouseOver(event) {
295
+ if (event.target.tagName == "rect") {
296
+ const path = event.target;
297
+ const d = path.__data__;
298
+ if (!d?.value) return this.onMouseOut(event);
299
+ const menu = this.tip.clear();
300
+ const percent = roundValueAuto(d.value, true, 1);
301
+ const row = menu.d.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
302
+ if (d.color)
303
+ row.append("div").style("width", "12px").style("height", "12px").style("background-color", d.color).style("flex-shrink", "0");
304
+ row.append("span").text(`${d.key}: ${percent}%`);
305
+ menu.show(event.clientX, event.clientY, true, true);
306
+ } else this.onMouseOut(event);
307
+ }
308
+ getColor(key) {
309
+ return key == "Yes" ? this.activePlot.color : key == "No" ? "#aaa" : `url(#${this.id}_diagonalHatch)`;
310
+ }
311
+ renderLikertBar(dict, y, height, tw) {
312
+ const itemG = this.dom.mainG.append("g");
313
+ let total = 0;
314
+ for (const key in dict) total += dict[key];
315
+ const key2num = {};
316
+ for (const key in tw.term.values) {
317
+ const category = tw.term.values[key].label.toUpperCase();
318
+ key2num[category] = Number(key);
319
+ }
320
+ let x = 0;
321
+ const keys = Object.keys(dict).sort((a, b) => key2num[a.toUpperCase()] - key2num[b.toUpperCase()]);
322
+ for (const key of keys) {
323
+ this.categories.add(key);
324
+ const width = this.renderCategory(key, dict, itemG, x, height, total);
325
+ x += width;
326
+ }
327
+ const text = getText(tw.term.details || tw.term.name);
328
+ const textG = this.dom.svg.append("g").attr("transform", `translate(0, ${y + this.shiftTop})`);
329
+ textG.append("text").text(text).attr("y", height * 2 / 3).style("font-size", "0.85em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
330
+ itemG.attr("transform", `translate(0, ${y})`);
331
+ }
332
+ renderCategory(category, dict, itemG, x, height, total, showPercent = false) {
333
+ const key = category.toUpperCase();
334
+ const module = this.module;
335
+ const colorMap = this.state.termdbConfig.colorMap;
336
+ const color = colorMap[module][key] || colorMap["*"][key];
337
+ const entry = Object.entries(dict).find((k) => k[0].toUpperCase() == key);
338
+ if (!entry) return 0;
339
+ const value = entry[1];
340
+ this.categories.add(category);
341
+ const percent = value / total * 100;
342
+ const width = percent / 100 * this.settings.svgw;
343
+ itemG.append("rect").attr("x", x).attr("width", width).attr("height", height).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("fill", color).datum({ key: category, value: percent, color }).on("mouseover", (event) => this.onMouseOver(event));
344
+ if (showPercent)
345
+ itemG.append("text").text(`${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.8em").attr("x", x + width + 10).attr("y", height * 0.6);
346
+ return width;
347
+ }
348
+ renderYesNoBar(percents, y, height, scPercentKeys) {
349
+ const percentsOrdered = Object.keys(percents).sort((a, b) => -a.localeCompare(b));
350
+ const total = Object.values(percents).reduce((a, b) => a + b, 0);
351
+ let x = 0;
352
+ for (const key of percentsOrdered) {
353
+ const color = this.getColor(key);
354
+ const value = percents[key];
355
+ const width = value / total * this.settings.svgw;
356
+ const percent = value / total * 100;
357
+ this.dom.mainG.append("rect").attr("x", x).attr("y", y).attr("width", width).attr("height", height).attr("stroke", "gray").attr("fill", color).datum({ key, value: percent, color });
358
+ if (scPercentKeys.includes(key)) {
359
+ const arrowX = x + width / 2;
360
+ const arrowSize = 6;
361
+ this.dom.mainG.append("polygon").attr(
362
+ "points",
363
+ `${arrowX},${y} ${arrowX - arrowSize},${y - arrowSize * 1.5} ${arrowX + arrowSize},${y - arrowSize * 1.5}`
364
+ ).attr("fill", "#c0392b").attr("pointer-events", "none");
365
+ this.dom.mainG.append("text").text(`SC ${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.7em").style("fill", "#c0392b").attr("font-weight", "bold").attr("text-anchor", "middle").attr("x", arrowX).attr("y", y - arrowSize * 1.5 - 3).attr("pointer-events", "none");
366
+ }
367
+ x += width;
368
+ }
369
+ }
370
+ renderLines(y) {
371
+ const width = this.settings.svgw;
372
+ const color = "lightgray";
373
+ const opacity = 0.5;
374
+ const bins = 4;
375
+ const size = width / bins;
376
+ let x;
377
+ const gridG = this.dom.gridG;
378
+ for (let i = 0; i <= bins; i++) {
379
+ x = i * size;
380
+ gridG.append("line").attr("x1", x).attr("x2", x).attr("y1", 0).attr("y2", y).style("stroke", color).style("stroke-opacity", opacity).style("stroke-dasharray", "5, 5");
381
+ }
382
+ }
383
+ drawLegendRect(x, y, text, legendG, isYesNo = false) {
384
+ const key = text.toUpperCase();
385
+ const colorMap = this.state.termdbConfig.colorMap;
386
+ const color = isYesNo ? this.getColor(text) : colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][text];
387
+ const size = 20;
388
+ const gap = 15;
389
+ const itemG = legendG.append("g").attr("transform", `translate(${x}, ${y})`);
390
+ itemG.append("rect").attr("x", 0).attr("y", 0).attr("width", size).attr("height", size).attr("fill", color).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("pointer-events", "none");
391
+ const label = itemG.append("text").attr("transform", `translate(${size + gap}, ${size / 2})`).attr("dominant-baseline", "central").style("font-size", "0.85em").text(text);
392
+ const labelWidth = label.node().getBBox().width;
393
+ return size + gap + labelWidth + gap;
394
+ }
395
+ showText(event, text, size = 110) {
396
+ if (text.length <= size) return;
397
+ const menu = this.tip.clear();
398
+ menu.d.style("padding", "5px").text(text);
399
+ menu.showunder(event.target);
400
+ }
401
+ getPercentageDict(tw) {
402
+ return this.data.term2Score[tw.term.id];
403
+ }
404
+ };
405
+ async function getPlotConfig(opts, app, _activeCohort) {
406
+ const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
407
+ const formsConfig = await getProfilePlotConfig(activeCohort, app, opts);
408
+ let config = formsConfig;
409
+ config.settings = getDefaultProfileFormsSettings();
410
+ config.headerTitle = "Templates: Visualization tools to provide insights and assist in leveraging data";
411
+ config = copyMerge(structuredClone(config), opts);
412
+ for (const plot of config.options) {
413
+ if (plot.terms) await fillTwLst(plot.terms, app.vocabApi);
414
+ }
415
+ return config;
416
+ }
417
+ function getDefaultProfileFormsSettings() {
418
+ const settings = {
419
+ controls: {
420
+ isOpen: false
421
+ },
422
+ profileForms: { svgw: 420, svgh: 480 }
423
+ };
424
+ const profilePlotSettings = getDefaultProfilePlotSettings();
425
+ settings.profileForms = copyMerge(settings.profileForms, profilePlotSettings);
426
+ return settings;
427
+ }
428
+ var profileFormsInit = getCompInit(profileForms);
429
+ var componentInit = profileFormsInit;
430
+ function getText(name, size = 110) {
431
+ if (name.length > size) name = name.slice(0, size) + "...";
432
+ return name;
433
+ }
434
+ export {
435
+ componentInit,
436
+ getDefaultProfileFormsSettings,
437
+ getPlotConfig,
438
+ profileForms,
439
+ profileFormsInit
440
+ };
441
+ //# sourceMappingURL=profileForms-OV3I6RK7.js.map