@sjcrh/proteinpaint-client 2.182.0 → 2.183.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-6ZTETSC5.js +1371 -0
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- package/dist/DEinput-UZEQIU2V.js +297 -0
- package/dist/DifferentialAnalysis-L6BOEYVO.js +238 -0
- package/dist/Disco-6FDT6KRM.js +3235 -0
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- package/dist/NumContEditor-G75O4YZE.js +105 -0
- package/dist/NumContEditor.unit.spec-BFUZRBPL.js +167 -0
- package/dist/NumCustomBinEditor-ILTPHCEF.js +36 -0
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- package/dist/NumRegularBinEditor-7ZJ2MEMY.js +36 -0
- package/dist/NumRegularBinEditor.unit.spec-QGVJET65.js +225 -0
- package/dist/NumSplineEditor-KE4UPODZ.js +190 -0
- package/dist/NumSplineEditor.unit.spec-YQOOZA7S.js +197 -0
- package/dist/NumericDensity-RL42P4QC.js +36 -0
- package/dist/NumericDensity.unit.spec-Y6RMTYC7.js +219 -0
- package/dist/NumericHandler-4QIX324I.js +37 -0
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- package/dist/barchart.events-XRGND6I7.js +45 -0
- package/dist/barchart.integration.spec-VQITP4YH.js +1675 -0
- package/dist/bars.renderer-S7A7I6BQ.js +12 -0
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- package/dist/block.mds.expressionrank-JYZARS7T.js +357 -0
- package/dist/block.mds.geneboxplot-FD2MCIHV.js +826 -0
- package/dist/block.mds.junction-LOHVQBIU.js +1543 -0
- package/dist/block.mds.svcnv-Z7SAYPQL.js +6799 -0
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- package/dist/brainImaging-VSOOMITW.js +421 -0
- package/dist/chat-LW23PIG5.js +148 -0
- package/dist/chunk-2A2KM5DU.js +117 -0
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setTimeout(() => {
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171
|
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this.dom.errorDiv.selectAll("*").remove();
|
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172
|
-
}, 3e3);
|
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173
|
-
};
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174
|
-
if (prjtNameLen == 0) {
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175
|
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return showError("Project name cannot be empty");
|
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176
|
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}
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177
|
-
if (prjtNameLen > 50 || prjtNameLen < 3) {
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|
-
return showError("Project name must be between 3 and 50 characters");
|
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|
-
}
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|
-
const notUnique = this.projects.some((p) => p.name === projectName.trim());
|
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181
|
-
if (notUnique) {
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|
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return showError(`Project name '${projectName}' already exists`);
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183
|
-
}
|
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184
|
-
if (this.dom.header) this.dom.header.text(`Project: ${projectName}`);
|
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185
|
-
await this.interactions.appDispatchEdit({ settings: { project: { name: projectName, type: "new" } } });
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186
|
-
});
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187
|
-
input.on("keydown", () => {
|
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188
|
-
const debouncer = () => {
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189
|
-
button.property("disabled", input.property("value").length == 0);
|
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190
|
-
};
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191
|
-
(0, import_debounce.debounce)(debouncer, 300)();
|
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192
|
-
});
|
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193
|
-
}
|
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194
|
-
/** Users may select an existing project from a table
|
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195
|
-
* returned for the db to edit or delete, depending
|
|
196
|
-
* on user roles.*/
|
|
197
|
-
renderProjectSelection(projectDiv) {
|
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198
|
-
if (!this.projects.length) return;
|
|
199
|
-
const tableDiv = projectDiv.append("div").attr("class", "sjpp-project-select-table").style("padding", "10px");
|
|
200
|
-
const columns = [{ label: "Project", sortable: true }];
|
|
201
|
-
const columnButtons = [
|
|
202
|
-
{
|
|
203
|
-
text: "Edit",
|
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204
|
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class: "sja_menuoption",
|
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205
|
-
//_ = event, __ = idx
|
|
206
|
-
callback: async (_, idx) => {
|
|
207
|
-
const project = this.projects[idx];
|
|
208
|
-
await this.interactions.appDispatchEdit({ settings: { project } });
|
|
209
|
-
this.interactions.launchViewer(this.dom.holder, []);
|
|
210
|
-
}
|
|
211
|
-
},
|
|
212
|
-
{
|
|
213
|
-
// Export button - pass only project.id and export will be CSV
|
|
214
|
-
text: "Export",
|
|
215
|
-
class: "sja_menuoption",
|
|
216
|
-
callback: async (_, idx) => {
|
|
217
|
-
const project = this.projects[idx];
|
|
218
|
-
try {
|
|
219
|
-
await this.interactions.exportAnnotations(project.id);
|
|
220
|
-
} catch (_2) {
|
|
221
|
-
sayerror(this.dom.errorDiv, "Failed to export annotations");
|
|
222
|
-
}
|
|
223
|
-
}
|
|
224
|
-
},
|
|
225
|
-
{
|
|
226
|
-
//TODO: Add logic for admins only once user roles are implemented
|
|
227
|
-
//Leave here for development
|
|
228
|
-
text: "Delete",
|
|
229
|
-
class: "sja_menuoption",
|
|
230
|
-
callback: (_, i) => {
|
|
231
|
-
const project = this.projects[i];
|
|
232
|
-
this.interactions.deleteProject(project);
|
|
233
|
-
this.projects.splice(i, 1);
|
|
234
|
-
projectDiv.select(".sjpp-project-select-table").remove();
|
|
235
|
-
this.renderProjectSelection(projectDiv);
|
|
236
|
-
}
|
|
237
|
-
}
|
|
238
|
-
];
|
|
239
|
-
renderTable({
|
|
240
|
-
div: tableDiv,
|
|
241
|
-
rows: this.projects.map((p) => {
|
|
242
|
-
return [{ value: p.name }];
|
|
243
|
-
}),
|
|
244
|
-
header: {
|
|
245
|
-
allowSort: true
|
|
246
|
-
},
|
|
247
|
-
columns,
|
|
248
|
-
singleMode: true,
|
|
249
|
-
columnButtons
|
|
250
|
-
});
|
|
251
|
-
}
|
|
252
|
-
};
|
|
253
|
-
|
|
254
|
-
// plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts
|
|
255
|
-
var AIProjectAdminInteractions = class {
|
|
256
|
-
constructor(app, id, prjtRepo) {
|
|
257
|
-
this.app = app;
|
|
258
|
-
this.id = id;
|
|
259
|
-
this.genome = app.vocabApi.vocab.genome;
|
|
260
|
-
this.dslabel = app.vocabApi.vocab.dslabel;
|
|
261
|
-
this.prjtRepo = prjtRepo;
|
|
262
|
-
}
|
|
263
|
-
async addProject(opts) {
|
|
264
|
-
const config = this.getConfig();
|
|
265
|
-
const projectObject = Object.assign({}, config.settings.project, opts.project);
|
|
266
|
-
const body = {
|
|
267
|
-
genome: this.genome,
|
|
268
|
-
dslabel: this.dslabel,
|
|
269
|
-
project: projectObject
|
|
270
|
-
};
|
|
271
|
-
try {
|
|
272
|
-
await this.prjtRepo.updateProject(body, "PUT");
|
|
273
|
-
} catch (e) {
|
|
274
|
-
console.error("Error adding project:", e.message || e);
|
|
275
|
-
throw e;
|
|
276
|
-
}
|
|
277
|
-
}
|
|
278
|
-
async editProject(opts) {
|
|
279
|
-
const config = this.getConfig();
|
|
280
|
-
const project = Object.assign(
|
|
281
|
-
{},
|
|
282
|
-
config.settings.project,
|
|
283
|
-
{
|
|
284
|
-
type: "edit"
|
|
285
|
-
},
|
|
286
|
-
opts.project
|
|
287
|
-
);
|
|
288
|
-
const body = {
|
|
289
|
-
genome: this.genome,
|
|
290
|
-
dslabel: this.dslabel,
|
|
291
|
-
project
|
|
292
|
-
};
|
|
293
|
-
try {
|
|
294
|
-
const res = await this.prjtRepo.updateProject(body, "POST");
|
|
295
|
-
if (!project.id) project.id = res.projectId;
|
|
296
|
-
} catch (e) {
|
|
297
|
-
console.error("Error editing project:", e.message || e);
|
|
298
|
-
throw e;
|
|
299
|
-
}
|
|
300
|
-
await this.appDispatchEdit({ settings: { project } }, config);
|
|
301
|
-
}
|
|
302
|
-
async deleteProject(project) {
|
|
303
|
-
const body = {
|
|
304
|
-
genome: this.genome,
|
|
305
|
-
dslabel: this.dslabel,
|
|
306
|
-
project: {
|
|
307
|
-
name: project.value,
|
|
308
|
-
id: project.id
|
|
309
|
-
}
|
|
310
|
-
};
|
|
311
|
-
try {
|
|
312
|
-
await this.prjtRepo.updateProject(body, "DELETE");
|
|
313
|
-
} catch (e) {
|
|
314
|
-
console.error("Error deleting project:", e.message || e);
|
|
315
|
-
throw e;
|
|
316
|
-
}
|
|
317
|
-
}
|
|
318
|
-
async getFilteredImages(filter) {
|
|
319
|
-
const config = this.getConfig();
|
|
320
|
-
return await this.app.vocabApi.getFilteredAiImages(config.settings.project, filter);
|
|
321
|
-
}
|
|
322
|
-
async launchViewer(holder, _images) {
|
|
323
|
-
holder.selectAll(".sjpp-deletable-ai-prjt-admin-div").remove();
|
|
324
|
-
const config = this.getConfig();
|
|
325
|
-
let images = [];
|
|
326
|
-
if (_images && _images.length > 0) {
|
|
327
|
-
images = _images;
|
|
328
|
-
} else {
|
|
329
|
-
const response = await this.prjtRepo.getImagePaths(
|
|
330
|
-
this.genome,
|
|
331
|
-
this.dslabel,
|
|
332
|
-
config.settings.project
|
|
333
|
-
);
|
|
334
|
-
images = response.images;
|
|
335
|
-
}
|
|
336
|
-
const wsiViewer = await import("./plot.wsi-YYXFAZWY.js");
|
|
337
|
-
wsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true);
|
|
338
|
-
}
|
|
339
|
-
async appDispatchEdit(settings, config = {}) {
|
|
340
|
-
if (!config?.settings) {
|
|
341
|
-
config = this.getConfig();
|
|
342
|
-
if (!config) throw new Error(`No plot with id='${this.id}' found.`);
|
|
343
|
-
}
|
|
344
|
-
await this.app.dispatch({
|
|
345
|
-
type: "plot_edit",
|
|
346
|
-
id: this.id,
|
|
347
|
-
config: Object.assign(settings, config.settings)
|
|
348
|
-
});
|
|
349
|
-
}
|
|
350
|
-
getConfig() {
|
|
351
|
-
return this.app.getState().plots.find((p) => p.id === this.id);
|
|
352
|
-
}
|
|
353
|
-
async exportAnnotations(projectId) {
|
|
354
|
-
const config = this.getConfig();
|
|
355
|
-
if (!config || !config.settings) throw new Error(`No plot with id='${this.id}' found.`);
|
|
356
|
-
let annotations = [];
|
|
357
|
-
try {
|
|
358
|
-
annotations = await this.prjtRepo.getAnnotations(this.genome, this.dslabel, projectId);
|
|
359
|
-
} catch (e) {
|
|
360
|
-
console.error("Error fetching annotations for export:", e?.message || e);
|
|
361
|
-
throw e;
|
|
362
|
-
}
|
|
363
|
-
const mime = "text/csv;charset=utf-8;";
|
|
364
|
-
let content;
|
|
365
|
-
if (!Array.isArray(annotations) || annotations.length === 0) {
|
|
366
|
-
content = "";
|
|
367
|
-
} else {
|
|
368
|
-
content = buildAnnotationsCsv(annotations);
|
|
369
|
-
}
|
|
370
|
-
const rawName = config.settings && config.settings.project && config.settings.project.name ? String(config.settings.project.name) : `project-${projectId}`;
|
|
371
|
-
const safeName = rawName.replace(/[^a-z0-9_.-]/gi, "_").slice(0, 200);
|
|
372
|
-
const filename = `${safeName}-annotations.csv`;
|
|
373
|
-
try {
|
|
374
|
-
const blob = new Blob([content], { type: mime });
|
|
375
|
-
const url = URL.createObjectURL(blob);
|
|
376
|
-
const a = document.createElement("a");
|
|
377
|
-
a.href = url;
|
|
378
|
-
a.download = filename;
|
|
379
|
-
document.body.appendChild(a);
|
|
380
|
-
a.click();
|
|
381
|
-
a.remove();
|
|
382
|
-
setTimeout(() => URL.revokeObjectURL(url), 1e3);
|
|
383
|
-
} catch (e) {
|
|
384
|
-
console.error("Error creating annotation download:", e?.message || e);
|
|
385
|
-
throw e;
|
|
386
|
-
}
|
|
387
|
-
}
|
|
388
|
-
};
|
|
389
|
-
|
|
390
|
-
// plots/aiProjectAdmin/view/ClassesTableRender.ts
|
|
391
|
-
var ClassesTableRender = class {
|
|
392
|
-
constructor(holder, rows) {
|
|
393
|
-
this.dom = {
|
|
394
|
-
holder,
|
|
395
|
-
tableDiv: holder.append("div"),
|
|
396
|
-
btnDiv: holder.append("div")
|
|
397
|
-
};
|
|
398
|
-
this.columns = [
|
|
399
|
-
{ label: "" },
|
|
400
|
-
// Empty for the delete icon
|
|
401
|
-
{
|
|
402
|
-
label: "NAME",
|
|
403
|
-
editCallback: (rowIdx, cell) => {
|
|
404
|
-
const newValue = cell.value.trim();
|
|
405
|
-
const foundSameName = this.rows.some((r, i) => newValue === r[1].value.trim() && i !== rowIdx);
|
|
406
|
-
if (foundSameName) {
|
|
407
|
-
alert(`Class name '${newValue}' already exists`);
|
|
408
|
-
cell.value = this.rowsCopy[rowIdx][1].value;
|
|
409
|
-
cell.__td.text(this.rowsCopy[rowIdx][1].value);
|
|
410
|
-
return;
|
|
411
|
-
}
|
|
412
|
-
this.rowsCopy = this.rows.map((r) => r.map((c) => ({ ...c })));
|
|
413
|
-
}
|
|
414
|
-
},
|
|
415
|
-
{ label: "COLOR" }
|
|
416
|
-
];
|
|
417
|
-
const colorScale = getColors(5);
|
|
418
|
-
this.rows = rows || this.setDefaultClasses(colorScale);
|
|
419
|
-
this.rowsCopy = [];
|
|
420
|
-
this.renderTable();
|
|
421
|
-
this.renderAddClassBtn(colorScale);
|
|
422
|
-
}
|
|
423
|
-
renderTable() {
|
|
424
|
-
this.dom.tableDiv.select("table").remove();
|
|
425
|
-
if (!this.rows || this.rows.length === 0) return;
|
|
426
|
-
this.rowsCopy = this.rows.map((r) => r.map((c) => ({ ...c })));
|
|
427
|
-
renderTable({
|
|
428
|
-
div: this.dom.tableDiv,
|
|
429
|
-
columns: this.columns,
|
|
430
|
-
rows: this.rows,
|
|
431
|
-
striped: false,
|
|
432
|
-
showLines: false,
|
|
433
|
-
singleMode: false,
|
|
434
|
-
resize: true
|
|
435
|
-
});
|
|
436
|
-
for (const [i, row] of this.rows.entries()) {
|
|
437
|
-
const deleteBtn = row[0].__td.select(".sja_menuoption");
|
|
438
|
-
deleteBtn.on("click", () => {
|
|
439
|
-
this.rows.splice(i, 1);
|
|
440
|
-
this.renderTable();
|
|
441
|
-
});
|
|
442
|
-
}
|
|
443
|
-
}
|
|
444
|
-
setDefaultClasses(colorScale) {
|
|
445
|
-
const rows = [];
|
|
446
|
-
for (let i = 0; i < 4; i++) {
|
|
447
|
-
this.getNewClass(colorScale, rows);
|
|
448
|
-
}
|
|
449
|
-
return rows;
|
|
450
|
-
}
|
|
451
|
-
getNewClass(colorScale, rows) {
|
|
452
|
-
const getName = (i2) => `New class ${i2}`;
|
|
453
|
-
let i = 1;
|
|
454
|
-
let found = true;
|
|
455
|
-
while (found) {
|
|
456
|
-
const checkName = getName(i);
|
|
457
|
-
found = rows.some((r) => r[1].value == checkName);
|
|
458
|
-
if (found) i++;
|
|
459
|
-
}
|
|
460
|
-
rows.push([
|
|
461
|
-
{ html: `<div class="sja_menuoption">×<div>` },
|
|
462
|
-
{ value: getName(i) },
|
|
463
|
-
{ color: rgb(colorScale(`${i}`)).formatHex() }
|
|
464
|
-
]);
|
|
465
|
-
}
|
|
466
|
-
renderAddClassBtn(colorScale) {
|
|
467
|
-
this.dom.btnDiv.append("div").text("Add Class").classed("sja_menuoption", true).style("display", "inline-block").style("margin", "10px 0px 0px 0px").on("click", () => {
|
|
468
|
-
if (this.rows.length >= 9) {
|
|
469
|
-
alert("Maximum number of classes reached.");
|
|
470
|
-
return;
|
|
471
|
-
}
|
|
472
|
-
this.getNewClass(colorScale, this.rows);
|
|
473
|
-
this.renderTable();
|
|
474
|
-
});
|
|
475
|
-
}
|
|
476
|
-
};
|
|
477
|
-
|
|
478
|
-
// plots/aiProjectAdmin/view/SelectorTableRender.ts
|
|
479
|
-
var SelectorTableRender = class {
|
|
480
|
-
constructor(holder, interactions, images) {
|
|
481
|
-
this.images = { rows: [], cols: [] };
|
|
482
|
-
this.selectedRows = /* @__PURE__ */ new Set();
|
|
483
|
-
this.sortedIndexMap = [];
|
|
484
|
-
this.dom = {
|
|
485
|
-
holder,
|
|
486
|
-
tableDiv: holder.append("div").attr("class", ".sjpp-deletable-ai-prjt-admin-div").attr("id", "sjpp-selector-table").style("padding", "10px 0"),
|
|
487
|
-
btnDiv: holder.append("div").attr("class", ".sjpp-deletable-ai-prjt-admin-div").attr("id", "sjpp-selector-btns")
|
|
488
|
-
};
|
|
489
|
-
this.images = images;
|
|
490
|
-
this.interactions = interactions;
|
|
491
|
-
const selectedList = images?.selectedImages;
|
|
492
|
-
const normalizeImageName = (s) => String(s ?? "").replace(/\.svs$/i, "").toLowerCase();
|
|
493
|
-
const selectedSet = new Set((selectedList || []).map(normalizeImageName));
|
|
494
|
-
this.selectedRows = /* @__PURE__ */ new Set();
|
|
495
|
-
(this.images?.rows ?? []).forEach((row, i) => {
|
|
496
|
-
const candidate = row?.[0]?.value;
|
|
497
|
-
const n = normalizeImageName(candidate);
|
|
498
|
-
if (selectedSet.has(n)) this.selectedRows.add(i);
|
|
499
|
-
});
|
|
500
|
-
this.render();
|
|
501
|
-
}
|
|
502
|
-
render() {
|
|
503
|
-
const columns = this.images.cols.map((c) => ({ ...c, sortable: true })) || [];
|
|
504
|
-
if (!columns.length) {
|
|
505
|
-
this.dom.tableDiv.append("div").text("Missing columns data").style("color", "red");
|
|
506
|
-
this.renderApplyBtn(
|
|
507
|
-
/*disable=*/
|
|
508
|
-
true
|
|
509
|
-
);
|
|
510
|
-
return;
|
|
511
|
-
}
|
|
512
|
-
const rows = this.images?.rows ?? [];
|
|
513
|
-
const mapped = rows.map((row, origIdx) => ({
|
|
514
|
-
row,
|
|
515
|
-
origIdx,
|
|
516
|
-
selected: this.selectedRows.has(origIdx)
|
|
517
|
-
}));
|
|
518
|
-
mapped.sort((a, b) => {
|
|
519
|
-
const selDiff = Number(b.selected) - Number(a.selected);
|
|
520
|
-
return selDiff || a.origIdx - b.origIdx;
|
|
521
|
-
});
|
|
522
|
-
const rowsSorted = mapped.map((m) => m.row);
|
|
523
|
-
this.sortedIndexMap = mapped.map((m) => m.origIdx);
|
|
524
|
-
const selectedRowsForRender = mapped.reduce((acc, m, idx) => {
|
|
525
|
-
if (m.selected) acc.push(idx);
|
|
526
|
-
return acc;
|
|
527
|
-
}, []);
|
|
528
|
-
renderTable({
|
|
529
|
-
div: this.dom.tableDiv,
|
|
530
|
-
columns,
|
|
531
|
-
rows: rowsSorted,
|
|
532
|
-
selectedRows: selectedRowsForRender,
|
|
533
|
-
striped: true,
|
|
534
|
-
header: { allowSort: true },
|
|
535
|
-
noButtonCallback: (sortedIdx, node) => {
|
|
536
|
-
const orig = this.sortedIndexMap?.[sortedIdx];
|
|
537
|
-
if (orig === void 0) return;
|
|
538
|
-
if (node.checked) {
|
|
539
|
-
this.selectedRows.add(orig);
|
|
540
|
-
} else {
|
|
541
|
-
this.selectedRows.delete(orig);
|
|
542
|
-
}
|
|
543
|
-
;
|
|
544
|
-
this.dom.tableDiv.selectAll("*").remove();
|
|
545
|
-
this.render();
|
|
546
|
-
}
|
|
547
|
-
});
|
|
548
|
-
this.renderApplyBtn(
|
|
549
|
-
/*disable=*/
|
|
550
|
-
false
|
|
551
|
-
);
|
|
552
|
-
}
|
|
553
|
-
renderApplyBtn(disable = false) {
|
|
554
|
-
const btn = this.dom.btnDiv.append("div").text("Apply").classed("sja_menuoption", true).style("display", "block").style("width", "fit-content").style("margin-left", "5vw");
|
|
555
|
-
if (disable) btn.attr("disabled", true);
|
|
556
|
-
btn.on("click", async () => {
|
|
557
|
-
if (!this.selectedRows.size) {
|
|
558
|
-
alert(`No rows selected. Please select some rows.`);
|
|
559
|
-
return;
|
|
560
|
-
}
|
|
561
|
-
btn.attr("disabled", true);
|
|
562
|
-
const images = Array.from(this.selectedRows).map((i) => `${this.images.rows[i][0].value}.svs`);
|
|
563
|
-
await this.interactions.editProject({
|
|
564
|
-
project: {
|
|
565
|
-
images
|
|
566
|
-
}
|
|
567
|
-
});
|
|
568
|
-
this.dom.holder.selectAll("*").remove();
|
|
569
|
-
await this.interactions.launchViewer(this.dom.holder, images);
|
|
570
|
-
});
|
|
571
|
-
}
|
|
572
|
-
};
|
|
573
|
-
|
|
574
|
-
// plots/aiProjectAdmin/view/UsersRender.ts
|
|
575
|
-
var UsersRender = class {
|
|
576
|
-
constructor(dom, users = []) {
|
|
577
|
-
this.dom = dom;
|
|
578
|
-
this.users = users.slice();
|
|
579
|
-
}
|
|
580
|
-
render() {
|
|
581
|
-
if (this.users.length > 0) {
|
|
582
|
-
const container = this.dom.holder.append("div").attr("id", "sjpp-users-render").attr("class", "sjpp-deletable-ai-prjt-admin-div").style("padding", "10px");
|
|
583
|
-
const inputRow = container.append("div").attr("class", "sjpp-users-input-row").style("margin-bottom", "10px");
|
|
584
|
-
const input = inputRow.append("input").attr("type", "text").attr("placeholder", "user@example.com").attr("id", "sjpp-user-email-input").style("margin-right", "8px").style("width", "300px");
|
|
585
|
-
const addBtn = inputRow.append("div").text("Add").classed("sja_menuoption", true).style("display", "inline-block").property("disabled", true).on("click", () => {
|
|
586
|
-
const email = input.property("value").trim();
|
|
587
|
-
const showError = (msg) => {
|
|
588
|
-
sayerror(this.dom.errorDiv, msg);
|
|
589
|
-
setTimeout(() => this.dom.errorDiv.selectAll("*").remove(), 3e3);
|
|
590
|
-
};
|
|
591
|
-
if (email.length === 0) {
|
|
592
|
-
return showError("Email cannot be empty");
|
|
593
|
-
}
|
|
594
|
-
const emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\.[A-Za-z]{2,}$/;
|
|
595
|
-
if (!emailRe.test(email)) {
|
|
596
|
-
return showError("Invalid email address");
|
|
597
|
-
}
|
|
598
|
-
if (this.users.includes(email)) {
|
|
599
|
-
return showError("Email already added");
|
|
600
|
-
}
|
|
601
|
-
this.users.push(email);
|
|
602
|
-
input.property("value", "");
|
|
603
|
-
addBtn.property("disabled", true);
|
|
604
|
-
this.renderTableArea(container);
|
|
605
|
-
});
|
|
606
|
-
input.on("input", () => {
|
|
607
|
-
addBtn.property("disabled", input.property("value").trim().length === 0);
|
|
608
|
-
});
|
|
609
|
-
this.renderTableArea(container);
|
|
610
|
-
}
|
|
611
|
-
}
|
|
612
|
-
renderTableArea(container) {
|
|
613
|
-
container.select(".sjpp-users-table-area").remove();
|
|
614
|
-
const tableDiv = container.append("div").attr("class", "sjpp-users-table-area").style("padding", "6px 0");
|
|
615
|
-
if (!this.users.length) {
|
|
616
|
-
tableDiv.append("div").text("No users added yet.").style("color", "#666");
|
|
617
|
-
return;
|
|
618
|
-
}
|
|
619
|
-
const columns = [{ label: "Email", sortable: true }];
|
|
620
|
-
const columnButtons = [
|
|
621
|
-
{
|
|
622
|
-
text: "\xD7",
|
|
623
|
-
class: "sja_menuoption",
|
|
624
|
-
callback: (_, idx) => {
|
|
625
|
-
this.users.splice(idx, 1);
|
|
626
|
-
container.select(".sjpp-users-table-area").remove();
|
|
627
|
-
this.renderTableArea(container);
|
|
628
|
-
}
|
|
629
|
-
}
|
|
630
|
-
];
|
|
631
|
-
renderTable({
|
|
632
|
-
div: tableDiv,
|
|
633
|
-
rows: this.users.map((u) => [{ value: u }]),
|
|
634
|
-
columns,
|
|
635
|
-
columnButtons,
|
|
636
|
-
singleMode: false,
|
|
637
|
-
striped: false,
|
|
638
|
-
showLines: false,
|
|
639
|
-
resize: true
|
|
640
|
-
});
|
|
641
|
-
tableDiv.selectAll(".sja_menuoption").html("\xD7<div></div>");
|
|
642
|
-
}
|
|
643
|
-
};
|
|
644
|
-
|
|
645
|
-
// plots/aiProjectAdmin/view/CreateProjectRender.ts
|
|
646
|
-
var CreateProjectRender = class {
|
|
647
|
-
constructor(dom, app, interactions) {
|
|
648
|
-
dom.holder.style("padding", "10px 20px").attr("class", "sjpp-deletable-ai-prjt-admin-div");
|
|
649
|
-
const filterDiv = dom.holder.append("div").attr("id", "sjpp-ai-prjt-admin-filter-div");
|
|
650
|
-
const wrapper = dom.holder.append("div").attr("id", "sjpp-ai-prjt-admin-classes-users-wrapper").style("display", "flex").style("gap", "20px").style("align-items", "flex-start").style("padding", "20px 0px");
|
|
651
|
-
const left = wrapper.append("div").attr("id", "sjpp-ai-prjt-admin-classes-table").style("flex", "0 1 auto");
|
|
652
|
-
const right = wrapper.append("div").attr("id", "sjpp-ai-prjt-admin-users").style("width", "320px").style("margin-left", "8px");
|
|
653
|
-
this.dom = {
|
|
654
|
-
holder: dom.holder,
|
|
655
|
-
errorDiv: dom.errorDiv,
|
|
656
|
-
filterDiv,
|
|
657
|
-
classDiv: left,
|
|
658
|
-
usersDiv: right
|
|
659
|
-
};
|
|
660
|
-
this.app = app;
|
|
661
|
-
this.interactions = interactions;
|
|
662
|
-
this.filter = null;
|
|
663
|
-
}
|
|
664
|
-
render() {
|
|
665
|
-
this.renderFilter();
|
|
666
|
-
this.classesTable = new ClassesTableRender(this.dom.classDiv);
|
|
667
|
-
this.usersRender = new UsersRender({ holder: this.dom.usersDiv, errorDiv: this.dom.errorDiv }, []);
|
|
668
|
-
this.usersRender.render();
|
|
669
|
-
this.renderApplyBtn();
|
|
670
|
-
}
|
|
671
|
-
renderFilter() {
|
|
672
|
-
const filter = filterInit({
|
|
673
|
-
holder: this.dom.filterDiv,
|
|
674
|
-
emptyLabel: "Add filter",
|
|
675
|
-
vocabApi: this.app.vocabApi,
|
|
676
|
-
termdbConfig: this.app.vocabApi.termdbConfig,
|
|
677
|
-
callback: (filter2) => {
|
|
678
|
-
this.filter = filter2;
|
|
679
|
-
}
|
|
680
|
-
});
|
|
681
|
-
const state = this.app.getState();
|
|
682
|
-
const root = getNormalRoot(state.termfilter.filter);
|
|
683
|
-
filter.main(root);
|
|
684
|
-
}
|
|
685
|
-
renderApplyBtn() {
|
|
686
|
-
const btn = this.dom.classDiv.append("div").text("Apply").classed("sja_menuoption", true).style("display", "inline-block").style("margin-left", "200px").on("click", async () => {
|
|
687
|
-
btn.attr("disabled", true);
|
|
688
|
-
const selections = await this.interactions.getFilteredImages(this.filter);
|
|
689
|
-
if (this.filter && (selections.status != "ok" || selections.data?.length === 0)) {
|
|
690
|
-
alert("No images match your filter criteria.");
|
|
691
|
-
return;
|
|
692
|
-
}
|
|
693
|
-
await this.interactions.addProject({
|
|
694
|
-
project: {
|
|
695
|
-
filter: this.filter,
|
|
696
|
-
classes: this.classesTable.rows.map((row, i) => {
|
|
697
|
-
return { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` };
|
|
698
|
-
}),
|
|
699
|
-
users: this.usersRender?.users || []
|
|
700
|
-
}
|
|
701
|
-
});
|
|
702
|
-
this.dom.holder.selectAll("*").remove();
|
|
703
|
-
new SelectorTableRender(this.dom.holder, this.interactions, selections.data);
|
|
704
|
-
});
|
|
705
|
-
}
|
|
706
|
-
/**** Uncomment before production */
|
|
707
|
-
// private validateInput() {
|
|
708
|
-
// const invalidInfo = {
|
|
709
|
-
// entries: [] as { dataType: string; reason: string }[],
|
|
710
|
-
// errorMsg: 'Please clear all "Data type: Class" errors before applying changes.'
|
|
711
|
-
// }
|
|
712
|
-
// //Show user error if no filter is defined.
|
|
713
|
-
// if (!this.filter) {
|
|
714
|
-
// invalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })
|
|
715
|
-
// }
|
|
716
|
-
// //Check if all classes were deleted
|
|
717
|
-
// const classes = this.classesTable?.rows.map(row => row[1].value) || []
|
|
718
|
-
// if (classes.length === 0) {
|
|
719
|
-
// invalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })
|
|
720
|
-
// }
|
|
721
|
-
// //Check to see if any class is still a default class
|
|
722
|
-
// const unchangedClasses =
|
|
723
|
-
// this.classesTable?.rows
|
|
724
|
-
// .filter(row => (row[1]?.value as string)?.startsWith('New class'))
|
|
725
|
-
// .map(r => r[1]?.value as string) || []
|
|
726
|
-
// for (const c of unchangedClasses) {
|
|
727
|
-
// invalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })
|
|
728
|
-
// }
|
|
729
|
-
// return invalidInfo
|
|
730
|
-
// }
|
|
731
|
-
};
|
|
732
|
-
|
|
733
|
-
// plots/aiProjectAdmin/AIProjectAdmin.ts
|
|
734
|
-
var AIProjectAdmin = class extends PlotBase {
|
|
735
|
-
constructor(opts, api) {
|
|
736
|
-
super(opts, api);
|
|
737
|
-
this.type = "AIProjectAdmin";
|
|
738
|
-
this.opts = opts;
|
|
739
|
-
this.dom = {
|
|
740
|
-
holder: opts.holder,
|
|
741
|
-
errorDiv: opts.holder.append("div").style("margin", "3px").attr("class", "sjpp-ai-prjt-admin-error")
|
|
742
|
-
};
|
|
743
|
-
if (opts.header) this.dom.header = opts.header;
|
|
744
|
-
this.prjtRepo = new ProjectReposity();
|
|
745
|
-
}
|
|
746
|
-
static {
|
|
747
|
-
this.type = "AIProjectAdmin";
|
|
748
|
-
}
|
|
749
|
-
getState(appState) {
|
|
750
|
-
const config = appState.plots.find((p) => p.id === this.id);
|
|
751
|
-
if (!config) {
|
|
752
|
-
throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
|
|
753
|
-
}
|
|
754
|
-
return {
|
|
755
|
-
config,
|
|
756
|
-
vocab: appState.vocab,
|
|
757
|
-
filter: appState.termfilter.filter
|
|
758
|
-
};
|
|
759
|
-
}
|
|
760
|
-
async init(appState) {
|
|
761
|
-
this.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo);
|
|
762
|
-
try {
|
|
763
|
-
this.projects = await this.prjtRepo.getProjects(appState.vocab.genome, appState.vocab.dslabel);
|
|
764
|
-
} catch (e) {
|
|
765
|
-
console.error("Error initializing AIProjectAdmin:", e);
|
|
766
|
-
throw e;
|
|
767
|
-
}
|
|
768
|
-
this.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, this.interactions);
|
|
769
|
-
this.prjtAdminUI.renderProjectAdmin();
|
|
770
|
-
}
|
|
771
|
-
async main() {
|
|
772
|
-
const state = structuredClone(this.state);
|
|
773
|
-
const config = state.config;
|
|
774
|
-
if (config.chartType != this.type) return;
|
|
775
|
-
const project = config.settings.project;
|
|
776
|
-
if (!project) return;
|
|
777
|
-
if (!this.interactions) throw new Error("AIProjectAdminInteractions not initialized");
|
|
778
|
-
this.dom.holder.selectAll(".sjpp-deletable-ai-prjt-admin-div").remove();
|
|
779
|
-
if (project.type === "new") {
|
|
780
|
-
const terms = await this.prjtRepo.getTerms(this.app);
|
|
781
|
-
if (!terms || terms.length === 0) {
|
|
782
|
-
sayerror(this.dom.errorDiv, "No metadata found.");
|
|
783
|
-
return;
|
|
784
|
-
}
|
|
785
|
-
const createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions);
|
|
786
|
-
createProjectRender.render();
|
|
787
|
-
}
|
|
788
|
-
if (project.type == "existing") {
|
|
789
|
-
if (!project.name) {
|
|
790
|
-
sayerror(this.dom.errorDiv, "Project name not provided.");
|
|
791
|
-
return;
|
|
792
|
-
}
|
|
793
|
-
if (!project.id) {
|
|
794
|
-
const existingProject = this.projects?.find((p) => p.name === project.name);
|
|
795
|
-
if (!existingProject) {
|
|
796
|
-
sayerror(this.dom.errorDiv, `Project ${project.name} not found.`);
|
|
797
|
-
return;
|
|
798
|
-
}
|
|
799
|
-
await this.app.save({
|
|
800
|
-
type: "plot_edit",
|
|
801
|
-
id: this.id,
|
|
802
|
-
config: { settings: { project: { id: existingProject.id } } }
|
|
803
|
-
});
|
|
804
|
-
}
|
|
805
|
-
await this.interactions.launchViewer(this.dom.holder, []);
|
|
806
|
-
}
|
|
807
|
-
}
|
|
808
|
-
};
|
|
809
|
-
var aiProjectAdminInit = getCompInit(AIProjectAdmin);
|
|
810
|
-
var componentInit = aiProjectAdminInit;
|
|
811
|
-
async function getPlotConfig(opts) {
|
|
812
|
-
const config = {
|
|
813
|
-
chartType: "AIProjectAdmin",
|
|
814
|
-
subfolder: "aiProjectAdmin",
|
|
815
|
-
extension: "ts",
|
|
816
|
-
hidePlotFilter: true,
|
|
817
|
-
//Disable the filter in the sandbox header
|
|
818
|
-
settings: getDefaultAIProjectAdminSettings(opts.overrides)
|
|
819
|
-
};
|
|
820
|
-
if (opts.settings?.project && !opts.settings?.project?.type) {
|
|
821
|
-
opts.settings.project.type = "existing";
|
|
822
|
-
}
|
|
823
|
-
return copyMerge(config, opts);
|
|
824
|
-
}
|
|
825
|
-
export {
|
|
826
|
-
aiProjectAdminInit,
|
|
827
|
-
componentInit,
|
|
828
|
-
getPlotConfig
|
|
829
|
-
};
|
|
830
|
-
//# sourceMappingURL=AIProjectAdmin-6SH5X3AF.js.map
|