@pikaa-ai/pikaa 0.3.22 → 0.3.24
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/assets/brand/orbit-logo-option4-whale.jpg +0 -0
- package/assets/brand/orbit-logo.jpg +0 -0
- package/assets/brand/orbit-logo.png +0 -0
- package/assets/brand/orbit-logo.svg +3 -0
- package/dist/cli.js +448 -181
- package/dist/index.js +22 -2
- package/package.json +1 -2
- package/skills/adaptyv/SKILL.md +0 -240
- package/skills/aeon/SKILL.md +0 -402
- package/skills/analytical-method-validation/SKILL.md +0 -299
- package/skills/anndata/SKILL.md +0 -431
- package/skills/arbor/SKILL.md +0 -152
- package/skills/arboreto/SKILL.md +0 -267
- package/skills/astropy/SKILL.md +0 -353
- package/skills/autoskill/SKILL.md +0 -233
- package/skills/benchling-integration/SKILL.md +0 -229
- package/skills/bgpt-paper-search/SKILL.md +0 -75
- package/skills/bids/SKILL.md +0 -237
- package/skills/biopython/SKILL.md +0 -472
- package/skills/bioservices/SKILL.md +0 -399
- package/skills/bulk-rnaseq/SKILL.md +0 -198
- package/skills/cellxgene-census/SKILL.md +0 -283
- package/skills/cirq/SKILL.md +0 -370
- package/skills/citation-management/SKILL.md +0 -329
- package/skills/clinical-decision-support/SKILL.md +0 -238
- package/skills/clinical-decision-support/references/README.md +0 -62
- package/skills/clinical-reports/SKILL.md +0 -248
- package/skills/clinical-reports/references/README.md +0 -34
- package/skills/cobrapy/SKILL.md +0 -496
- package/skills/consciousness-council/SKILL.md +0 -151
- package/skills/dask/SKILL.md +0 -482
- package/skills/database-lookup/SKILL.md +0 -386
- package/skills/datamol/SKILL.md +0 -200
- package/skills/deepchem/SKILL.md +0 -244
- package/skills/deepspot-m/SKILL.md +0 -175
- package/skills/deeptools/SKILL.md +0 -412
- package/skills/depmap/SKILL.md +0 -301
- package/skills/dhdna-profiler/SKILL.md +0 -184
- package/skills/diffdock/SKILL.md +0 -488
- package/skills/dnanexus-integration/SKILL.md +0 -325
- package/skills/docx/SKILL.md +0 -99
- package/skills/esm/SKILL.md +0 -334
- package/skills/etetoolkit/SKILL.md +0 -327
- package/skills/exa-search/SKILL.md +0 -102
- package/skills/executing-plans/SKILL.md +0 -14
- package/skills/experimental-design/SKILL.md +0 -234
- package/skills/exploratory-data-analysis/SKILL.md +0 -280
- package/skills/flowio/SKILL.md +0 -310
- package/skills/fluidsim/SKILL.md +0 -279
- package/skills/frontend-design/SKILL.md +0 -100
- package/skills/generate-image/SKILL.md +0 -304
- package/skills/geniml/SKILL.md +0 -310
- package/skills/genomic-coordinates/SKILL.md +0 -189
- package/skills/genomic-intelligence/SKILL.md +0 -243
- package/skills/geomaster/README.md +0 -105
- package/skills/geomaster/SKILL.md +0 -366
- package/skills/geopandas/SKILL.md +0 -250
- package/skills/get-available-resources/SKILL.md +0 -260
- package/skills/gget/SKILL.md +0 -153
- package/skills/ginkgo-cloud-lab/SKILL.md +0 -106
- package/skills/glycoengineering/SKILL.md +0 -339
- package/skills/gtars/SKILL.md +0 -282
- package/skills/guardian-rails/SKILL.md +0 -54
- package/skills/histolab/SKILL.md +0 -243
- package/skills/hugging-science/SKILL.md +0 -132
- package/skills/hypogenic/SKILL.md +0 -290
- package/skills/hypothesis-generation/SKILL.md +0 -264
- package/skills/imaging-data-commons/SKILL.md +0 -496
- package/skills/infographics/SKILL.md +0 -315
- package/skills/iso-standards-readiness/SKILL.md +0 -352
- package/skills/lab-hardware-cad/SKILL.md +0 -372
- package/skills/labarchive-integration/SKILL.md +0 -216
- package/skills/lamindb/SKILL.md +0 -408
- package/skills/latchbio-integration/SKILL.md +0 -227
- package/skills/latex-posters/SKILL.md +0 -369
- package/skills/latex-posters/references/README.md +0 -439
- package/skills/liteparse/SKILL.md +0 -295
- package/skills/literature-review/SKILL.md +0 -263
- package/skills/markdown-mermaid-writing/SKILL.md +0 -322
- package/skills/market-research-reports/SKILL.md +0 -337
- package/skills/markitdown/SKILL.md +0 -264
- package/skills/matchms/SKILL.md +0 -276
- package/skills/matlab/SKILL.md +0 -274
- package/skills/matplotlib/SKILL.md +0 -378
- package/skills/medchem/SKILL.md +0 -321
- package/skills/modal/SKILL.md +0 -468
- package/skills/molecular-dynamics/SKILL.md +0 -458
- package/skills/molfeat/SKILL.md +0 -348
- package/skills/ncats-arax/SKILL.md +0 -178
- package/skills/networkx/SKILL.md +0 -440
- package/skills/neurokit2/SKILL.md +0 -323
- package/skills/neuropixels-analysis/SKILL.md +0 -412
- package/skills/nextflow/SKILL.md +0 -195
- package/skills/omero-integration/SKILL.md +0 -222
- package/skills/onekgpd/SKILL.md +0 -371
- package/skills/ontology-term-resolution/SKILL.md +0 -147
- package/skills/open-notebook/SKILL.md +0 -297
- package/skills/openpiv/SKILL.md +0 -469
- package/skills/opentrons-integration/SKILL.md +0 -322
- package/skills/optimize-for-gpu/SKILL.md +0 -176
- package/skills/owasp-top10/SKILL.md +0 -48
- package/skills/pacsomatic/LICENSE +0 -21
- package/skills/pacsomatic/SKILL.md +0 -150
- package/skills/paper-lookup/SKILL.md +0 -263
- package/skills/paperclip/SKILL.md +0 -413
- package/skills/paperzilla/SKILL.md +0 -159
- package/skills/parallel-web/SKILL.md +0 -128
- package/skills/pathml/SKILL.md +0 -222
- package/skills/pathogen-variant-surveillance/SKILL.md +0 -208
- package/skills/pathway-enrichment/SKILL.md +0 -194
- package/skills/pdf/SKILL.md +0 -322
- package/skills/peer-review/SKILL.md +0 -288
- package/skills/penetration-testing/SKILL.md +0 -31
- package/skills/pennylane/SKILL.md +0 -240
- package/skills/phylogenetics/SKILL.md +0 -409
- package/skills/pi-agent/SKILL.md +0 -83
- package/skills/pkpd-modeling/SKILL.md +0 -381
- package/skills/polars/SKILL.md +0 -393
- package/skills/polars-bio/SKILL.md +0 -379
- package/skills/ponytail/SKILL.md +0 -31
- package/skills/ponytail-audit/SKILL.md +0 -18
- package/skills/pptx/SKILL.md +0 -246
- package/skills/pptx-posters/SKILL.md +0 -258
- package/skills/primekg/SKILL.md +0 -99
- package/skills/protocolsio-integration/SKILL.md +0 -236
- package/skills/pufferlib/SKILL.md +0 -328
- package/skills/pydeseq2/SKILL.md +0 -369
- package/skills/pydicom/SKILL.md +0 -381
- package/skills/pyhealth/SKILL.md +0 -124
- package/skills/pylabrobot/SKILL.md +0 -216
- package/skills/pymatgen/SKILL.md +0 -404
- package/skills/pymc/SKILL.md +0 -310
- package/skills/pymoo/SKILL.md +0 -276
- package/skills/pyopenms/SKILL.md +0 -179
- package/skills/pysam/SKILL.md +0 -330
- package/skills/pytdc/SKILL.md +0 -297
- package/skills/pytorch-lightning/SKILL.md +0 -191
- package/skills/pyzotero/SKILL.md +0 -137
- package/skills/qiskit/SKILL.md +0 -259
- package/skills/qutip/SKILL.md +0 -317
- package/skills/rdkit/SKILL.md +0 -94
- package/skills/relsa-severity-assessment/SKILL.md +0 -354
- package/skills/research-grants/SKILL.md +0 -296
- package/skills/research-grants/references/README.md +0 -287
- package/skills/research-lookup/README.md +0 -106
- package/skills/research-lookup/SKILL.md +0 -338
- package/skills/rowan/SKILL.md +0 -398
- package/skills/scanpy/SKILL.md +0 -303
- package/skills/scholar-evaluation/SKILL.md +0 -296
- package/skills/scientific-brainstorming/SKILL.md +0 -282
- package/skills/scientific-critical-thinking/SKILL.md +0 -180
- package/skills/scientific-schematics/SKILL.md +0 -370
- package/skills/scientific-slides/SKILL.md +0 -379
- package/skills/scientific-visualization/SKILL.md +0 -285
- package/skills/scientific-writing/SKILL.md +0 -356
- package/skills/scikit-bio/SKILL.md +0 -470
- package/skills/scikit-learn/SKILL.md +0 -324
- package/skills/scikit-survival/SKILL.md +0 -313
- package/skills/scvelo/SKILL.md +0 -328
- package/skills/scvi-tools/SKILL.md +0 -201
- package/skills/seaborn/SKILL.md +0 -254
- package/skills/security-auditor/SKILL.md +0 -37
- package/skills/shap/SKILL.md +0 -282
- package/skills/simpy/SKILL.md +0 -283
- package/skills/stable-baselines3/SKILL.md +0 -325
- package/skills/statistical-analysis/SKILL.md +0 -446
- package/skills/statistical-power/SKILL.md +0 -200
- package/skills/statsmodels/SKILL.md +0 -238
- package/skills/sympy/SKILL.md +0 -354
- package/skills/systematic-debugging/SKILL.md +0 -35
- package/skills/tamarind/SKILL.md +0 -285
- package/skills/tdd/SKILL.md +0 -26
- package/skills/tiledbvcf/SKILL.md +0 -456
- package/skills/timesfm-forecasting/SKILL.md +0 -408
- package/skills/timesfm-forecasting/examples/global-temperature/README.md +0 -178
- package/skills/torch-geometric/SKILL.md +0 -458
- package/skills/torchdrug/SKILL.md +0 -241
- package/skills/transformers/SKILL.md +0 -195
- package/skills/treatment-plans/SKILL.md +0 -174
- package/skills/treatment-plans/references/README.md +0 -19
- package/skills/umap-learn/SKILL.md +0 -488
- package/skills/uncertainty-and-units/SKILL.md +0 -384
- package/skills/usfiscaldata/SKILL.md +0 -171
- package/skills/vaex/SKILL.md +0 -204
- package/skills/venue-templates/SKILL.md +0 -269
- package/skills/verification-before-completion/SKILL.md +0 -22
- package/skills/waypoint-bio/SKILL.md +0 -273
- package/skills/what-if-oracle/SKILL.md +0 -184
- package/skills/writing-plans/SKILL.md +0 -15
- package/skills/xlsx/SKILL.md +0 -110
- package/skills/zarr-python/SKILL.md +0 -241
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---
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name: infographics
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description: "Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3.6 Flash for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe palettes."
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allowed-tools: Read Write Edit Bash
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metadata:
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version: "1.6"
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openclaw:
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primaryEnv: OPENROUTER_API_KEY
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envVars:
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- name: OPENROUTER_API_KEY
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required: false
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description: OpenRouter API key for the skill's LLM-powered steps.
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---
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# Infographics
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## Overview
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Infographics are visual representations of information, data, or knowledge designed to present complex content quickly and clearly. **This skill uses Nano Banana Pro AI for infographic generation with Gemini 3.6 Flash quality review and Perplexity Sonar for research.**
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**How it works:**
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- (Optional) **Research phase**: Gather accurate facts and statistics using Perplexity Sonar
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- Describe your infographic in natural language
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- Nano Banana Pro generates publication-quality infographics automatically
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- **Gemini 3.6 Flash reviews quality** against document-type thresholds
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- **Smart iteration**: Only regenerates if quality is below threshold
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- Professional-ready output in minutes
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- No design skills required
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**Quality Thresholds by Document Type:**
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| Document Type | Threshold | Description |
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|---------------|-----------|-------------|
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| marketing | 8.5/10 | Marketing materials - must be compelling |
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| report | 8.0/10 | Business reports - professional quality |
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| presentation | 7.5/10 | Slides, talks - clear and engaging |
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| social | 7.0/10 | Social media content |
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| internal | 7.0/10 | Internal use |
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| draft | 6.5/10 | Working drafts |
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| default | 7.5/10 | General purpose |
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**Simply describe what you want, and Nano Banana Pro creates it.**
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## Quick Start
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Generate any infographic by simply describing it:
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```bash
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# Generate a list infographic (default threshold 7.5/10)
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python skills/infographics/scripts/generate_infographic.py \
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"5 benefits of regular exercise" \
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-o figures/exercise_benefits.png --type list
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# Generate for marketing (highest threshold: 8.5/10)
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python skills/infographics/scripts/generate_infographic.py \
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"Product features comparison" \
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-o figures/product_comparison.png --type comparison --doc-type marketing
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# Generate with corporate style
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"Company milestones 2010-2025" \
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-o figures/timeline.png --type timeline --style corporate
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# Generate with colorblind-safe palette
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python skills/infographics/scripts/generate_infographic.py \
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"Heart disease statistics worldwide" \
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-o figures/health_stats.png --type statistical --palette wong
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# Generate WITH RESEARCH for accurate, up-to-date data
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python skills/infographics/scripts/generate_infographic.py \
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"Global AI market size and growth projections" \
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-o figures/ai_market.png --type statistical --research
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```
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**What happens behind the scenes:**
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1. **(Optional) Research**: Perplexity Sonar gathers accurate facts, statistics, and data
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2. **Generation 1**: Nano Banana Pro creates initial infographic following design best practices
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3. **Review 1**: **Gemini 3.6 Flash** evaluates quality against document-type threshold
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4. **Decision**: If quality >= threshold → **DONE** (no more iterations needed!)
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5. **If below threshold**: Improved prompt based on critique, regenerate
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6. **Repeat**: Until quality meets threshold OR max iterations reached
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**Smart Iteration Benefits:**
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- ✅ Saves API calls if first generation is good enough
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- ✅ Higher quality standards for marketing materials
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- ✅ Faster turnaround for drafts/internal use
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- ✅ Appropriate quality for each use case
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**Output**: Versioned images plus a detailed review log with quality scores, critiques, and early-stop information.
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## When to Use This Skill
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Use the **infographics** skill when:
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- Presenting data or statistics in a visual format
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- Creating timeline visualizations for project milestones or history
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- Explaining processes, workflows, or step-by-step guides
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- Comparing options, products, or concepts side-by-side
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- Summarizing key points in an engaging visual format
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- Creating geographic or map-based data visualizations
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- Building hierarchical or organizational charts
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- Designing social media content or marketing materials
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- Technical flowcharts and circuit diagrams
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- Biological pathways and molecular diagrams
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## Research Integration
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### Automatic Data Gathering (`--research`)
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When creating infographics that require accurate, up-to-date data, use the `--research` flag to automatically gather facts and statistics using **Perplexity Sonar Pro**.
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```bash
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# Research and generate statistical infographic
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python skills/infographics/scripts/generate_infographic.py \
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"Global renewable energy adoption rates by country" \
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-o figures/renewable_energy.png --type statistical --research
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# Research for timeline infographic
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python skills/infographics/scripts/generate_infographic.py \
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"History of artificial intelligence breakthroughs" \
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-o figures/ai_history.png --type timeline --research
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"Electric vehicles vs hydrogen vehicles comparison" \
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```
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### What Research Provides
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The research phase automatically:
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1. **Gathers Key Facts**: 5-8 relevant facts and statistics about the topic
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2. **Provides Context**: Background information for accurate representation
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3. **Finds Data Points**: Specific numbers, percentages, and dates
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4. **Cites Sources**: Mentions major studies or sources
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5. **Prioritizes Recency**: Focuses on 2023-2026 information
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### When to Use Research
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**Enable research (`--research`) for:**
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- Statistical infographics requiring accurate numbers
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- Market data, industry statistics, or trends
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- Any topic where accuracy is critical
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- Simple conceptual infographics
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- Topics where you provide all the data in the prompt
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### Research Output
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- `{name}_research.json` - Raw research data and sources
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- Research content is automatically incorporated into the infographic prompt
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---
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## Infographic Types
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`list`, `geographic`, `hierarchical`, `anatomical`, `resume`, and `social`. What each is
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for, the data shape it expects, and worked prompts are in
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[references/infographic_type_catalog.md](references/infographic_type_catalog.md) and
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[references/infographic_types.md](references/infographic_types.md).
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| `marketing` | Coral, teal, yellow | Social media, campaigns |
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| `nonprofit` | Warm orange, sage, sand | Social causes, charities |
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# Corporate style
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python skills/infographics/scripts/generate_infographic.py \
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"Q4 Results" -o q4.png --type statistical --style corporate
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# Healthcare style
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python skills/infographics/scripts/generate_infographic.py \
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"Patient Journey" -o journey.png --type process --style healthcare
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```
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---
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## Colorblind-Safe Palettes
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### Available Palettes (`--palette`)
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| `wong` | Orange, sky blue, green, blue, vermillion | Most widely recommended |
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| `ibm` | Ultramarine, indigo, magenta, orange, gold | IBM's accessible palette |
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| `tol` | 12-color extended palette | For many categories |
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```bash
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# Wong's colorblind-safe palette
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python skills/infographics/scripts/generate_infographic.py \
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"Survey results by category" -o survey.png --type statistical --palette wong
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```
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---
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## Smart Iterative Refinement and CLI
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The generate-review-refine loop, every command-line option, and configuration are in
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[references/iterative_refinement.md](references/iterative_refinement.md).
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## Prompt Engineering Tips
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✓ **Good prompts** (specific, detailed):
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```
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"5 benefits of meditation: reduces stress, improves focus,
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better sleep, lower blood pressure, emotional balance"
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```
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✗ **Avoid vague prompts**:
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```
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"meditation infographic"
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```
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### Include Data Points
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✓ **Good**:
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```
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"Market growth from $10B (2020) to $45B (2025), CAGR 35%"
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```
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✗ **Vague**:
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```
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"market is growing"
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```
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### Specify Visual Elements
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✓ **Good**:
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```
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"Timeline showing 5 milestones with icons for each event"
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```
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---
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## Reference Files
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For detailed guidance, load these reference files:
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- **`references/infographic_types.md`**: Extended templates for all 10+ types
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- **`references/design_principles.md`**: Visual hierarchy, layout, typography
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- **`references/color_palettes.md`**: Full palette specifications
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---
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## Troubleshooting
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### Common Issues
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**Problem**: Text in infographic is unreadable
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- **Solution**: Reduce text content; use --type to specify layout type
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**Problem**: Colors clash or are inaccessible
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- **Solution**: Use `--palette wong` for colorblind-safe colors
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**Problem**: Quality score too low
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|
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- **Solution**: Increase iterations with `--iterations 3`; use more specific prompt
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**Problem**: Wrong infographic type generated
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- **Solution**: Always specify `--type` flag for consistent results
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---
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|
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## Integration with Other Skills
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-
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This skill works synergistically with:
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-
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- **scientific-schematics**: For technical diagrams and flowcharts
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293
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- **market-research-reports**: Infographics for business reports
|
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|
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- **scientific-slides**: Infographic elements for presentations
|
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295
|
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- **generate-image**: For non-infographic visual content
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|
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---
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|
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|
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|
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## Quick Reference Checklist
|
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|
-
|
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|
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Before generating:
|
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|
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- [ ] Clear, specific content description
|
|
303
|
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- [ ] Infographic type selected (`--type`)
|
|
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|
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- [ ] Style appropriate for audience (`--style`)
|
|
305
|
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- [ ] Output path specified (`-o`)
|
|
306
|
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- [ ] API key configured
|
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|
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|
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After generating:
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|
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- [ ] Review the generated image
|
|
310
|
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- [ ] Check the review log for scores
|
|
311
|
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- [ ] Regenerate with more specific prompt if needed
|
|
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|
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|
|
313
|
-
---
|
|
314
|
-
|
|
315
|
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Use this skill to create professional, accessible, and visually compelling infographics using the power of Nano Banana Pro AI with intelligent quality review.
|
|
@@ -1,352 +0,0 @@
|
|
|
1
|
-
---
|
|
2
|
-
name: iso-standards-readiness
|
|
3
|
-
description: Prepares and structurally reviews readiness evidence for ISO management-system and laboratory-competence standards - ISO 13485 medical device QMS, ISO 14971 device risk management, ISO/IEC 17025 testing and calibration laboratories, and ISO 15189 medical laboratories. Use when organizing declared scope, controlled documents, risk-management files, scope of accreditation, traceability, CAPA, external-provider controls, or bounded local evidence manifests, and when separating ISO certification from laboratory accreditation, FDA QMSR inspection, CLIA certification, MDSAP, and EU MDR/IVDR evidence boundaries. Not for legal applicability, compliance, certification, or accreditation decisions; contains no clause text.
|
|
4
|
-
license: MIT
|
|
5
|
-
compatibility: Python 3.11+; bundled CLIs use only the standard library and bounded local JSON/Markdown files, with no network access or credentials.
|
|
6
|
-
allowed-tools: Read Write Bash Glob
|
|
7
|
-
metadata:
|
|
8
|
-
version: "1.0"
|
|
9
|
-
skill-author: K-Dense Inc.
|
|
10
|
-
supersedes: iso-13485-certification
|
|
11
|
-
last-reviewed: "2026-07-26"
|
|
12
|
-
---
|
|
13
|
-
|
|
14
|
-
# ISO Standards Readiness Evidence Preparation
|
|
15
|
-
|
|
16
|
-
## Purpose
|
|
17
|
-
|
|
18
|
-
Use this skill to organize declared scope, controlled documents, implementation
|
|
19
|
-
records, traceability, and readiness evidence for substantive human review against a
|
|
20
|
-
named standard. It summarizes process workflows and provides deterministic local
|
|
21
|
-
checks. It contains no clause text and performs no audit.
|
|
22
|
-
|
|
23
|
-
This is a router. `SKILL.md` holds the boundary, the lane discipline, the shared
|
|
24
|
-
workflow, and the CLI contract. Per-standard depth lives in `references/`.
|
|
25
|
-
|
|
26
|
-
## Non-negotiable boundary
|
|
27
|
-
|
|
28
|
-
This skill cannot:
|
|
29
|
-
|
|
30
|
-
- certify or accredit anything, issue or validate a certificate, accreditation
|
|
31
|
-
schedule, or licence, or promise an audit, assessment, or inspection result;
|
|
32
|
-
- determine legal/regulatory applicability, device classification, reportability,
|
|
33
|
-
conformity route, product authorization, market access, licensure, personnel
|
|
34
|
-
qualification, or compliance;
|
|
35
|
-
- replace authorized management, the management representative, laboratory director,
|
|
36
|
-
quality manager, authorized signatory, RA/QA, legal counsel, regulatory/competent
|
|
37
|
-
authorities, a notified body, an MDSAP Auditing Organization, an accreditation body,
|
|
38
|
-
an assessor, or a certification body;
|
|
39
|
-
- validate a method, compute or approve measurement uncertainty, establish
|
|
40
|
-
metrological traceability, set risk-acceptability criteria, or judge whether a risk,
|
|
41
|
-
decision rule, or reference interval is fit for purpose; or
|
|
42
|
-
- infer implementation, competence, conformity, compliance, or readiness from a
|
|
43
|
-
template, checklist, filename, keyword, document count, percentage, or script
|
|
44
|
-
result.
|
|
45
|
-
|
|
46
|
-
Always label outputs **draft evidence-preparation material for authorized human
|
|
47
|
-
review**. Preserve unresolved decisions as blockers rather than resolving them.
|
|
48
|
-
|
|
49
|
-
## ISO and IEC copyright
|
|
50
|
-
|
|
51
|
-
ISO and IEC standards are copyrighted. Obtain each standard from
|
|
52
|
-
[ISO](https://www.iso.org/standards.html), IEC, an ISO national member, or another
|
|
53
|
-
authorized source. Do not retrieve, paste, reproduce, or generate clause text.
|
|
54
|
-
Summarize the organization's own process and cite the controlled authorized copy. See
|
|
55
|
-
[ISO copyright](https://www.iso.org/copyright.html). Accreditation-body, CAP, and
|
|
56
|
-
scheme checklists that quote requirements are separately licensed — keep them out of
|
|
57
|
-
shared repositories and prompts too.
|
|
58
|
-
|
|
59
|
-
## Standards covered
|
|
60
|
-
|
|
61
|
-
Read the reference file for the standard in play **before** preparing evidence. Each
|
|
62
|
-
one carries its own current edition, lane, domain vocabulary, and failure modes.
|
|
63
|
-
|
|
64
|
-
| Standard | Profile key | Lane | Reference |
|
|
65
|
-
| --- | --- | --- | --- |
|
|
66
|
-
| ISO 13485 medical device QMS | `iso-13485` | Certification | `references/iso-13485.md` |
|
|
67
|
-
| ISO 14971 device risk management | `iso-14971` | No lane of its own | `references/iso-14971.md` |
|
|
68
|
-
| ISO/IEC 17025 testing and calibration laboratories | `iso-17025` | Accreditation | `references/iso-17025.md` |
|
|
69
|
-
| ISO 15189 medical laboratories | `iso-15189` | Accreditation | `references/iso-15189.md` |
|
|
70
|
-
|
|
71
|
-
A standard absent from this table is out of scope for the bundled checks. Do not
|
|
72
|
-
repurpose a profile for a standard it does not name — a domain vocabulary borrowed from
|
|
73
|
-
a different standard produces a report that looks complete and means nothing.
|
|
74
|
-
|
|
75
|
-
## Current baseline (read the ledger before any time-sensitive statement)
|
|
76
|
-
|
|
77
|
-
- **ISO 13485:2016** Edition 3, confirmed after its 2025 systematic review.
|
|
78
|
-
**EN ISO 13485:2016/A11:2021** is a European amendment, not an ISO international
|
|
79
|
-
"Amendment 1:2021."
|
|
80
|
-
- **ISO 14971:2019** Edition 3, confirmed in 2025, with **ISO/TR 24971:2020** as its
|
|
81
|
-
informative guidance companion. There is no ISO 14971 certificate.
|
|
82
|
-
- **ISO/IEC 17025:2017** Edition 3 remains current; no successor edition identified.
|
|
83
|
-
- **ISO 15189:2022** Edition 4 replaced the 2012 edition, absorbed the POCT
|
|
84
|
-
requirements formerly in ISO 22870, and its accreditation transition closed in
|
|
85
|
-
**December 2025** — implemented, not upcoming.
|
|
86
|
-
- **FDA QMSR** effective and enforced since **2026-02-02**; Part 820 is titled
|
|
87
|
-
*Quality Management System Regulation*; QSIT is retired in favour of Compliance
|
|
88
|
-
Program **7382.850**.
|
|
89
|
-
- **MDSAP** current Audit Approach is **MDSAP AU P0002.010**, version date
|
|
90
|
-
**2026-02-02**.
|
|
91
|
-
- **Accreditation recognition:** Global Accreditation Cooperation Incorporated
|
|
92
|
-
commenced full operations **2026-01-01**, replacing ILAC and IAF, with its own MRA;
|
|
93
|
-
former IAF MLA / ILAC MRA outputs stay recognized during the transition.
|
|
94
|
-
- **EU:** use current consolidated MDR/IVDR texts, current OJEU harmonised-standard
|
|
95
|
-
decisions, current MDCG guidance, and the product-specific conformity route.
|
|
96
|
-
|
|
97
|
-
Read `references/source-ledger.md` before making any time-sensitive statement. It
|
|
98
|
-
records provenance limitations, including which entries still need confirmation against
|
|
99
|
-
the ISO catalogue.
|
|
100
|
-
|
|
101
|
-
## Keep the assurance lanes separate
|
|
102
|
-
|
|
103
|
-
Lane confusion, not missing documents, causes most substantive errors here.
|
|
104
|
-
Certification, accreditation, regulator inspection, mandatory licensure, regulatory
|
|
105
|
-
audit programmes, and product conformity assessment are decided by different bodies
|
|
106
|
-
against different bases, and none substitutes for another. Two rules that are violated
|
|
107
|
-
constantly:
|
|
108
|
-
|
|
109
|
-
- Organizations are **certified**; laboratories are **accredited**. "ISO 17025
|
|
110
|
-
certified" and "ISO 15189 certified" are category errors.
|
|
111
|
-
- A certificate never displaces a regulator. ISO 13485 certification does not exempt
|
|
112
|
-
anyone from FDA inspection, and ISO 15189 accreditation does not satisfy CLIA.
|
|
113
|
-
|
|
114
|
-
Read `references/assurance-lanes.md` for the full lane table, scope-statement limits,
|
|
115
|
-
and the titling rule.
|
|
116
|
-
|
|
117
|
-
## Core workflow
|
|
118
|
-
|
|
119
|
-
### Step 1: Declare the standard, purpose, and authorized owners
|
|
120
|
-
|
|
121
|
-
Name the standard(s), the lane(s) the work supports, and the owners: management
|
|
122
|
-
representative or laboratory director, quality owner, legal/applicability owner,
|
|
123
|
-
process or technical owners, approvers, and escalation route. A lane is a declared
|
|
124
|
-
input, never an inference.
|
|
125
|
-
|
|
126
|
-
```bash
|
|
127
|
-
PYTHONDONTWRITEBYTECODE=1 python3 scripts/validate_scope_intake.py \
|
|
128
|
-
assets/templates/scope-intake-template.json --standard iso-13485
|
|
129
|
-
```
|
|
130
|
-
|
|
131
|
-
Use the matching template and profile:
|
|
132
|
-
|
|
133
|
-
| Profile | Template |
|
|
134
|
-
| --- | --- |
|
|
135
|
-
| `iso-13485`, `iso-14971` | `assets/templates/scope-intake-template.json` |
|
|
136
|
-
| `iso-17025` | `assets/templates/laboratory-scope-intake-template.json` |
|
|
137
|
-
| `iso-15189` | `assets/templates/medical-laboratory-scope-intake-template.json` |
|
|
138
|
-
|
|
139
|
-
`--standard` defaults to `iso-13485`. Every distributed template intentionally fails
|
|
140
|
-
closed; copy it outside the skill and complete it with controlled organizational
|
|
141
|
-
evidence. Undetermined applicability raises `HUMAN_DECISION_REQUIRED` — leave it as a
|
|
142
|
-
blocker.
|
|
143
|
-
|
|
144
|
-
### Step 2: Freeze source/version evidence
|
|
145
|
-
|
|
146
|
-
For every standard, regulation, guidance, scheme document, audit model, and product
|
|
147
|
-
source, record publisher, official title, edition/version/date, authorized location,
|
|
148
|
-
access and currency-review dates, scope/applicability owner, impact assessment, status,
|
|
149
|
-
evidence, and approval.
|
|
150
|
-
|
|
151
|
-
Do not use search snippets as controlled requirements. Do not silently update an
|
|
152
|
-
incorporated edition when a publisher releases a new one — FDA incorporated a specific
|
|
153
|
-
ISO 13485 edition, and a later ISO or EN publication does not change it.
|
|
154
|
-
|
|
155
|
-
### Step 3: Inventory controlled documents and records
|
|
156
|
-
|
|
157
|
-
Do not count named procedures or scan keywords. Build an explicit register linking
|
|
158
|
-
documents, records, source versions, owners, approvals, effective dates, retention
|
|
159
|
-
bases, training, and change records.
|
|
160
|
-
|
|
161
|
-
```bash
|
|
162
|
-
PYTHONDONTWRITEBYTECODE=1 python3 scripts/audit_document_records.py \
|
|
163
|
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assets/templates/document-register-template.json
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```
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This check is standard-agnostic. Read `references/evidence-architecture.md` for the
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evidence architecture.
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### Step 4: Review process implementation
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Assess controlled procedures **and sampled records** across the domains your profile
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declares — the per-standard reference file lists them. Each item needs owner, status,
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evidence IDs, source/version, approval, and open-gap links.
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A procedure describing an activity is not evidence the activity happened. Sample
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records in every domain you report on, and state what you sampled and what you did not.
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### Step 5: Run the focused checks that apply to the lane
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Device lanes (`iso-13485`, `iso-14971`) — risk/design/production/post-market chain:
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```bash
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/check_traceability.py \
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assets/templates/traceability-matrix-template.json
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```
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All standards — corrective action and effectiveness:
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```bash
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/check_capa.py \
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assets/templates/capa-record-template.json
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```
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All standards — suppliers and externally provided products and services, including
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calibration providers, reference-material suppliers, and referral or subcontracted
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laboratories:
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```bash
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/check_supplier_controls.py \
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assets/templates/supplier-controls-template.json
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```
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Pending or ineffective CAPA effectiveness evidence blocks closure. Critical supplier
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controls stay blocked until risk-based controls and approvals are evidenced.
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Note that `check_traceability.py` concerns design and risk traceability, **not**
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metrological traceability — the words collide and it is the wrong tool for laboratory
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work.
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### Step 6: Address lane-specific regulator evidence separately
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For the US device lane only:
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```bash
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/check_qmsr_transition.py \
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assets/templates/qmsr-transition-template.json
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```
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Review current Part 820/FDA source basis, supplemental provisions, obsolete QSR/QSIT
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references, pre-effective-date records, inspection-accessible management/quality/
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supplier-audit records, current inspection-process training, complaint and servicing
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records, labeling/packaging controls, supplier/software/change evidence, and prohibited
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certificate-equivalence claims. Do not build an old-820-to-ISO clause map as the
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current control framework.
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Laboratory lanes have no equivalent bundled check. CLIA, licensure, and national
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inspection evidence stays with the authorized compliance owner; see
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`references/iso-15189.md`.
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### Step 7: Assemble a bounded readiness manifest
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Copy the evidence template outside the skill. Use relative paths to local `.json`,
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`.md`, or `.markdown` evidence only, and one declared lane purpose per manifest.
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```bash
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/validate_evidence_manifest.py \
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/path/to/evidence-manifest.json \
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--standard iso-17025 \
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--base-dir /path/to/controlled-export \
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--verify-files \
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--output /path/to/manifest-report.json
|
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|
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```
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|
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244
|
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Then generate a domain-level gap view against the same profile:
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|
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|
|
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|
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```bash
|
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|
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PYTHONDONTWRITEBYTECODE=1 python3 scripts/gap_analyzer.py \
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|
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/path/to/evidence-manifest.json \
|
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|
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--standard iso-17025 \
|
|
250
|
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--base-dir /path/to/controlled-export \
|
|
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|
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--verify-files \
|
|
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|
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--output /path/to/gap-report.json
|
|
253
|
-
```
|
|
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|
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|
|
255
|
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The analyzer uses explicit manifest labels. It does not infer evidence from filenames,
|
|
256
|
-
keywords, or proprietary standard text, and does not calculate a compliance score. A
|
|
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|
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domain absent from `expected_domains` is reported `not-assessed`, which is **not** a
|
|
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|
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not-applicable determination.
|
|
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|
-
|
|
260
|
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Read `references/gap-analysis-checklist.md` for the fail-closed review questions.
|
|
261
|
-
|
|
262
|
-
### Step 8: Human review and controlled handoff
|
|
263
|
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|
|
264
|
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Present:
|
|
265
|
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|
|
266
|
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- declared standard, scope, assurance lane(s), and unresolved applicability decisions;
|
|
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|
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- the exact source/version baseline;
|
|
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|
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- evidence sampled and the limitations of that sample;
|
|
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|
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- structural findings grouped by process and risk;
|
|
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|
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- actions, change, and CAPA owners with dates;
|
|
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- approval state; and
|
|
272
|
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- the authorized party responsible for the next decision.
|
|
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|
-
|
|
274
|
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Never title the result "certificate," "accreditation," "compliance report," "audit
|
|
275
|
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pass," "deemed status," or "ready for inspection." A suitable title is **Draft evidence
|
|
276
|
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review for authorized human assessment**, naming the lane it was prepared for.
|
|
277
|
-
|
|
278
|
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## CLI behavior and safety
|
|
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|
-
|
|
280
|
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All bundled CLIs:
|
|
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|
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|
|
282
|
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- use the Python standard library only;
|
|
283
|
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- perform no network requests;
|
|
284
|
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- accept bounded local JSON; optional evidence verification accepts only bounded local
|
|
285
|
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JSON/Markdown;
|
|
286
|
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- reject symbolic-link inputs, duplicate JSON keys, non-finite numbers, excessive
|
|
287
|
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size/nesting/items, and unsafe evidence paths;
|
|
288
|
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- refuse an unlisted `--standard` value rather than falling back to a default;
|
|
289
|
-
- use no dynamic evaluation, executable deserialization, pickle, or shell execution;
|
|
290
|
-
- refuse to overwrite reports unless `--force` is explicit; and
|
|
291
|
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- produce deterministic sorted JSON.
|
|
292
|
-
|
|
293
|
-
Treat the manifest itself as a controlled organizational record. An optional SHA-256
|
|
294
|
-
comparison detects a local file mismatch only; it does not establish provenance,
|
|
295
|
-
authenticity, adequacy, or trust in a user-supplied manifest. Values in JSON
|
|
296
|
-
`local_path` and `evidence.location` fields refer to the user's controlled export, not
|
|
297
|
-
to bundled skill resources; unresolved placeholders must never be opened.
|
|
298
|
-
|
|
299
|
-
Exit codes:
|
|
300
|
-
|
|
301
|
-
- `0`: no structural finding for the supplied fields; **not a compliance, conformity,
|
|
302
|
-
competence, or accreditation result**;
|
|
303
|
-
- `1`: structural/evidence gaps found;
|
|
304
|
-
- `2`: invalid or unsafe input/output, including an unlisted standard.
|
|
305
|
-
|
|
306
|
-
Run `python3 scripts/<name>.py --help` for each interface.
|
|
307
|
-
|
|
308
|
-
## Templates
|
|
309
|
-
|
|
310
|
-
Scope intake, per profile:
|
|
311
|
-
|
|
312
|
-
- `assets/templates/scope-intake-template.json` — device lifecycle
|
|
313
|
-
- `assets/templates/laboratory-scope-intake-template.json` — testing/calibration
|
|
314
|
-
- `assets/templates/medical-laboratory-scope-intake-template.json` — examinations
|
|
315
|
-
|
|
316
|
-
Shared registers and records:
|
|
317
|
-
|
|
318
|
-
- `assets/templates/document-register-template.json`
|
|
319
|
-
- `assets/templates/capa-record-template.json`
|
|
320
|
-
- `assets/templates/traceability-matrix-template.json`
|
|
321
|
-
- `assets/templates/supplier-controls-template.json`
|
|
322
|
-
- `assets/templates/evidence-manifest-template.json`
|
|
323
|
-
- `assets/templates/qmsr-transition-template.json` — US device lane only
|
|
324
|
-
|
|
325
|
-
Management-system documentation:
|
|
326
|
-
|
|
327
|
-
- `assets/templates/quality-manual-template.md`
|
|
328
|
-
- `assets/templates/procedures/CAPA-procedure-template.md`
|
|
329
|
-
- `assets/templates/procedures/document-control-procedure-template.md`
|
|
330
|
-
|
|
331
|
-
Every template is deliberately `draft`/`pending`, uses placeholders, and includes
|
|
332
|
-
owner/status/evidence/approval fields. Copy and control it; never edit a distributed
|
|
333
|
-
template into a purported approved record.
|
|
334
|
-
|
|
335
|
-
## References
|
|
336
|
-
|
|
337
|
-
Shared:
|
|
338
|
-
|
|
339
|
-
- `references/assurance-lanes.md` — what each lane decides, and the titling rule
|
|
340
|
-
- `references/source-ledger.md` — dated authoritative source baseline and provenance
|
|
341
|
-
limitations
|
|
342
|
-
- `references/evidence-architecture.md` — documentation and record architecture
|
|
343
|
-
- `references/gap-analysis-checklist.md` — fail-closed evidence review questions
|
|
344
|
-
- `references/quality-manual-guide.md` — controlled manual development
|
|
345
|
-
|
|
346
|
-
Per standard:
|
|
347
|
-
|
|
348
|
-
- `references/iso-13485.md` — device QMS process/evidence framework, QMSR, MDSAP, EU
|
|
349
|
-
- `references/iso-14971.md` — risk-management chain and the missing-link failure modes
|
|
350
|
-
- `references/iso-17025.md` — laboratory competence, traceability, uncertainty, and
|
|
351
|
-
decision rules
|
|
352
|
-
- `references/iso-15189.md` — medical laboratories, POCT, reporting, and the CLIA lane
|