@noyrax/5d-database-plugin 0.1.0

package/out/cli/test-v-dimension.js

@@ -0,0 +1,330 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const multi_db_manager_1 = require("../core/multi-db-manager");
+const migration_manager_1 = require("../core/migration-manager");
+const embedding_repository_1 = require("../repositories/embedding-repository");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    let currentPath = workspaceRoot;
+    const maxDepth = 5;
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            console.log(`[Test V-Dimension] Loaded .env file from: ${envPath}`);
+            return;
+        }
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break;
+        }
+        currentPath = parentPath;
+    }
+    console.warn('[Test V-Dimension] No .env file found. Using environment variables only.');
+}
+/**
+ * Tests V-Dimension: Opens database, checks VSS, counts embeddings, tests VSS search.
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length === 0) {
+        console.error('Usage: test-v-dimension <workspace-root>');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    console.log('=== V-Dimension Test ===');
+    console.log(`Workspace root: ${workspaceRoot}`);
+    console.log('');
+    // Load .env file
+    loadEnvFile(workspaceRoot);
+    if (process.env.OPENAI_API_KEY) {
+        console.log('✓ OpenAI API key loaded from .env file');
+    }
+    else {
+        console.warn('⚠ WARNING: OPENAI_API_KEY not found in .env file or environment variables');
+    }
+    console.log('');
+    try {
+        // 1. Initialize MultiDbManager
+        console.log('1. Initializing MultiDbManager...');
+        const dbManager = new multi_db_manager_1.MultiDbManager(workspaceRoot);
+        const pluginId = dbManager.getPluginId();
+        console.log(`   Plugin ID: ${pluginId}`);
+        console.log(`   Database directory: ${dbManager.getDbDirectory()}`);
+        console.log('');
+        // 2. Run migrations
+        console.log('2. Running migrations...');
+        const pluginRoot = path.resolve(__dirname, '..', '..');
+        const migrationManager = new migration_manager_1.MigrationManager(dbManager, pluginRoot);
+        try {
+            await migrationManager.migrate('V');
+            console.log('   ✓ V-Dimension migration completed');
+        }
+        catch (error) {
+            if (error.code === 'SQLITE_CONSTRAINT' && error.message.includes('migrations.version')) {
+                console.log('   ⚠ Migration already attempted (version exists in migrations table)');
+                console.log('   → Checking if tables were actually created...');
+                // Continue - we'll check tables in step 6
+            }
+            else {
+                throw error;
+            }
+        }
+        console.log('');
+        // 3. Open V-Dimension database
+        console.log('3. Opening V-Dimension database...');
+        const vDb = await dbManager.getDatabase('V');
+        console.log('   ✓ V-Dimension database opened');
+        console.log('');
+        // 4. Check Vector Database
+        console.log('4. Checking Vector Database...');
+        const vectorDb = dbManager.getVectorDatabase();
+        if (vectorDb) {
+            const vectorDbAvailable = vectorDb.isAvailable();
+            if (vectorDbAvailable) {
+                console.log('   ✓ Vector Database available');
+            }
+            else {
+                console.log('   ⚠ Vector Database exists but not available');
+                console.log('   → Will use fallback cosine similarity');
+            }
+        }
+        else {
+            console.log('   ⚠ Vector Database not initialized');
+            console.log('   → Vector Database initialization may have failed');
+        }
+        console.log('');
+        // 5. Check database file
+        console.log('5. Checking database file...');
+        const dbPath = path.join(dbManager.getDbDirectory(), 'vectors.db');
+        if (fs.existsSync(dbPath)) {
+            const stats = fs.statSync(dbPath);
+            console.log(`   ✓ vectors.db exists`);
+            console.log(`   Size: ${(stats.size / 1024).toFixed(2)} KB`);
+        }
+        else {
+            console.log('   ⚠ vectors.db does not exist yet');
+            console.log('   → Will be created on first use');
+        }
+        console.log('');
+        // 6. Check tables
+        console.log('6. Checking database tables...');
+        const tables = await getTables(vDb);
+        console.log(`   Found ${tables.length} tables:`);
+        for (const table of tables) {
+            console.log(`   - ${table}`);
+        }
+        console.log('');
+        // 7. Check VSS Virtual Table
+        console.log('7. Checking VSS Virtual Table...');
+        const hasVssTable = tables.includes('embeddings_vss');
+        if (hasVssTable) {
+            console.log('   ✓ embeddings_vss virtual table exists');
+            const vssCount = await getVssRowCount(vDb);
+            console.log(`   VSS rows: ${vssCount}`);
+        }
+        else {
+            console.log('   ⚠ embeddings_vss virtual table does not exist');
+            console.log('   → Vector Database may not be loaded or not available');
+        }
+        console.log('');
+        // 8. Count embeddings
+        console.log('8. Counting embeddings...');
+        let allEmbeddings = [];
+        try {
+            const embeddingRepo = new embedding_repository_1.EmbeddingRepository(vDb);
+            allEmbeddings = await embeddingRepo.getAll(pluginId);
+            console.log(`   Total embeddings: ${allEmbeddings.length}`);
+            if (allEmbeddings.length > 0) {
+                const byDimension = new Map();
+                for (const emb of allEmbeddings) {
+                    const count = byDimension.get(emb.dimension) || 0;
+                    byDimension.set(emb.dimension, count + 1);
+                }
+                console.log('   By dimension:');
+                for (const [dim, count] of Array.from(byDimension.entries()).sort()) {
+                    console.log(`   - ${dim}: ${count}`);
+                }
+            }
+            else {
+                console.log('   ⚠ No embeddings found');
+                console.log('   → Run ingestion to generate embeddings');
+            }
+        }
+        catch (error) {
+            if (error.code === 'SQLITE_ERROR' && error.message.includes('no such table: embeddings')) {
+                console.log('   ⚠ embeddings table does not exist');
+                console.log('   → Migration may not have been applied correctly');
+                console.log('   → Try running migration manually or re-run test');
+            }
+            else {
+                throw error;
+            }
+        }
+        console.log('');
+        // 9. Test Vector Database Search (if available and embeddings exist)
+        if (vectorDb && vectorDb.isAvailable() && allEmbeddings && allEmbeddings.length > 0) {
+            console.log('9. Testing Vector Database Search...');
+            try {
+                // Generate a test query embedding (simple test)
+                const testQuery = [0.1, 0.2, 0.3]; // Dummy vector for testing
+                console.log('   ⚠ Vector database search test skipped (requires OpenAI API for real query embedding)');
+                console.log('   → Use semantic_discovery MCP tool for real search');
+            }
+            catch (error) {
+                console.log(`   ⚠ Vector database search test failed: ${error}`);
+            }
+        }
+        else {
+            console.log('9. Vector Database Search test skipped:');
+            if (!vectorDb || !vectorDb.isAvailable()) {
+                console.log('   → Vector Database not available');
+            }
+            if (!allEmbeddings || allEmbeddings.length === 0) {
+                console.log('   → No embeddings to search');
+            }
+        }
+        console.log('');
+        // 10. Summary
+        console.log('=== Test Summary ===');
+        console.log(`✓ V-Dimension database: ${fs.existsSync(dbPath) ? 'EXISTS' : 'NOT CREATED YET'}`);
+        console.log(`✓ Vector Database: ${vectorDb && vectorDb.isAvailable() ? 'AVAILABLE' : 'NOT AVAILABLE (using fallback)'}`);
+        // Check if embeddings table exists
+        const hasEmbeddingsTable = tables.includes('embeddings');
+        if (hasEmbeddingsTable) {
+            try {
+                const embeddingRepo = new embedding_repository_1.EmbeddingRepository(vDb);
+                const allEmbeddings = await embeddingRepo.getAll(pluginId);
+                console.log(`✓ Embeddings: ${allEmbeddings.length} total`);
+            }
+            catch (error) {
+                console.log(`✓ Embeddings table: EXISTS (but error reading: ${error})`);
+            }
+        }
+        else {
+            console.log(`✓ Embeddings table: NOT CREATED (migration not applied)`);
+        }
+        console.log(`✓ VSS Virtual Table: ${hasVssTable ? 'EXISTS' : 'NOT CREATED'}`);
+        console.log('');
+        const hasEmbeddingsTableForCheck = tables.includes('embeddings');
+        let allEmbeddingsForCheck = [];
+        if (hasEmbeddingsTableForCheck) {
+            try {
+                const embeddingRepo = new embedding_repository_1.EmbeddingRepository(vDb);
+                allEmbeddingsForCheck = await embeddingRepo.getAll(pluginId);
+            }
+            catch (error) {
+                // Ignore
+            }
+        }
+        if (!hasEmbeddingsTableForCheck) {
+            console.log('💡 Next steps:');
+            console.log('   1. Migration needs to be applied');
+            console.log('   2. Re-run this test to apply migration');
+            console.log('   3. Then run ingestion to generate embeddings');
+        }
+        else if (allEmbeddingsForCheck.length === 0) {
+            console.log('💡 Next steps:');
+            console.log('   1. Run ingestion: npm run ingest or VS Code command "5d-database.ingest"');
+            console.log('   2. This will generate embeddings for all 5 dimensions');
+            console.log('   3. Embeddings will be automatically synced to VSS (if available)');
+        }
+        else if (!hasVssTable) {
+            console.log('💡 Note:');
+            console.log('   - Embeddings exist but VSS Virtual Table not created');
+            console.log('   - This means VSS Extension is not available');
+            console.log('   - System will use fallback cosine similarity (slower but works)');
+        }
+        else {
+            console.log('✓ V-Dimension is ready for semantic search!');
+        }
+        // Close database
+        await dbManager.closeDatabase('V');
+        console.log('');
+        console.log('Test completed successfully!');
+    }
+    catch (error) {
+        console.error('Test failed:', error);
+        if (error instanceof Error && error.stack) {
+            console.error('Stack trace:', error.stack);
+        }
+        process.exit(1);
+    }
+}
+/**
+ * Gets all tables in the database.
+ */
+function getTables(db) {
+    return new Promise((resolve, reject) => {
+        db.all(`SELECT name FROM sqlite_master WHERE type='table' ORDER BY name`, [], (err, rows) => {
+            if (err) {
+                reject(err);
+            }
+            else {
+                resolve(rows.map(row => row.name));
+            }
+        });
+    });
+}
+/**
+ * Gets row count from VSS virtual table.
+ */
+function getVssRowCount(db) {
+    return new Promise((resolve, reject) => {
+        db.get(`SELECT COUNT(*) as count FROM embeddings_vss`, [], (err, row) => {
+            if (err) {
+                // VSS table may not exist or query may fail
+                resolve(0);
+            }
+            else {
+                resolve(row ? row.count : 0);
+            }
+        });
+    });
+}
+if (require.main === module) {
+    main().catch(error => {
+        console.error('Fatal error:', error);
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=test-v-dimension.js.map

package/out/cli/test-v-dimension.js.map

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package/out/cli/tool-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=tool-cli.d.ts.map

package/out/cli/tool-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"tool-cli.d.ts","sourceRoot":"","sources":["../../src/cli/tool-cli.ts"],"names":[],"mappings":""}

package/out/cli/tool-cli.js

@@ -0,0 +1,237 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const multi_db_manager_1 = require("../core/multi-db-manager");
+const id_mapper_1 = require("../core/id-mapper");
+const bootstrap_1 = require("../mcp/tools/bootstrap");
+const semantic_discovery_1 = require("../mcp/tools/semantic-discovery");
+const system_explanation_1 = require("../mcp/tools/system-explanation");
+const learning_path_1 = require("../mcp/tools/learning-path");
+const cross_analysis_1 = require("../mcp/tools/cross-analysis");
+const gap_analysis_1 = require("../mcp/tools/gap-analysis");
+const architecture_mining_1 = require("../mcp/tools/architecture-mining");
+const docs_path_resolver_1 = require("../core/docs-path-resolver");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    let currentPath = workspaceRoot;
+    const maxDepth = 5;
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            return;
+        }
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break;
+        }
+        currentPath = parentPath;
+    }
+}
+/**
+ * Validates that docs/ directory exists.
+ */
+function validateDocsDirectory(workspaceRoot) {
+    const docsPath = docs_path_resolver_1.DocsPathResolver.findDocsDirectoryFromPath(workspaceRoot);
+    if (!docsPath) {
+        console.error('ERROR: docs/ directory not found in workspace or parent directories.');
+        console.error('Please run Documentation System Plugin (Noyrax) first to generate docs/ directory.');
+        return false;
+    }
+    return true;
+}
+/**
+ * CLI tool for executing MCP tools directly (without MCP server).
+ * Usage: tool-cli <workspace-root> <tool-name> <args...>
+ *
+ * Tools:
+ *   bootstrap                          - Get bootstrap information
+ *   semantic_discovery <query> [limit] - Semantic search with context
+ *   system_explanation                 - Get system overview
+ *   learning_path <topic>              - Generate learning path
+ *   cross_analysis <filePath>          - Cross-dimension analysis
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length < 2) {
+        console.error('Usage: tool-cli <workspace-root> <tool-name> <args...>');
+        console.error('');
+        console.error('Tools:');
+        console.error('  bootstrap                          - Get bootstrap information');
+        console.error('  semantic_discovery <query> [limit] - Semantic search with context');
+        console.error('  system_explanation                 - Get system overview');
+        console.error('  learning_path <topic>              - Generate learning path');
+        console.error('  cross_analysis <filePath>          - Cross-dimension analysis');
+        console.error('  gap_analysis [--min-deps N] [--limit N] - Find documentation gaps');
+        console.error('  architecture_mining [filePath]      - Mine architectural decisions from code');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    const toolName = args[1];
+    // Validate workspace root exists
+    if (!fs.existsSync(workspaceRoot)) {
+        console.error(`ERROR: Workspace root does not exist: ${workspaceRoot}`);
+        process.exit(1);
+    }
+    // Load .env file
+    loadEnvFile(workspaceRoot);
+    // Validate docs/ directory
+    if (!validateDocsDirectory(workspaceRoot)) {
+        process.exit(1);
+    }
+    const dbManager = new multi_db_manager_1.MultiDbManager(workspaceRoot);
+    const idMapper = new id_mapper_1.IdMapper(dbManager);
+    const pluginId = dbManager.getPluginId();
+    try {
+        switch (toolName) {
+            case 'bootstrap': {
+                const result = await (0, bootstrap_1.executeBootstrap)({ pluginId }, dbManager);
+                console.log(result);
+                break;
+            }
+            case 'semantic_discovery': {
+                if (args.length < 3) {
+                    console.error('Usage: tool-cli <workspace-root> semantic_discovery <query> [limit]');
+                    process.exit(1);
+                }
+                const query = args[2];
+                const limit = args.length > 3 ? parseInt(args[3], 10) : 10;
+                if (isNaN(limit)) {
+                    console.error('Error: limit must be a number');
+                    process.exit(1);
+                }
+                const result = await (0, semantic_discovery_1.executeSemanticDiscovery)({ query, pluginId, limit }, dbManager, idMapper);
+                console.log(result);
+                break;
+            }
+            case 'system_explanation': {
+                const result = await (0, system_explanation_1.executeSystemExplanation)({ pluginId }, dbManager);
+                console.log(result);
+                break;
+            }
+            case 'learning_path': {
+                if (args.length < 3) {
+                    console.error('Usage: tool-cli <workspace-root> learning_path <topic>');
+                    process.exit(1);
+                }
+                const topic = args[2];
+                const result = await (0, learning_path_1.executeLearningPath)({ topic, pluginId }, dbManager);
+                console.log(result);
+                break;
+            }
+            case 'cross_analysis': {
+                if (args.length < 3) {
+                    console.error('Usage: tool-cli <workspace-root> cross_analysis <filePath>');
+                    process.exit(1);
+                }
+                const filePath = args[2];
+                const crossAnalysisTool = new cross_analysis_1.CrossAnalysisTool(dbManager, idMapper);
+                const result = await crossAnalysisTool.execute({ filePath, pluginId });
+                console.log(result);
+                break;
+            }
+            case 'gap_analysis': {
+                let minDeps = 5;
+                let limit = 50;
+                // Parse optional arguments
+                for (let i = 2; i < args.length; i++) {
+                    if (args[i] === '--min-deps' && args[i + 1]) {
+                        minDeps = parseInt(args[i + 1], 10);
+                        if (isNaN(minDeps)) {
+                            console.error('Error: --min-deps must be a number');
+                            process.exit(1);
+                        }
+                        i++;
+                    }
+                    else if (args[i] === '--limit' && args[i + 1]) {
+                        limit = parseInt(args[i + 1], 10);
+                        if (isNaN(limit)) {
+                            console.error('Error: --limit must be a number');
+                            process.exit(1);
+                        }
+                        i++;
+                    }
+                }
+                const gapAnalysisTool = new gap_analysis_1.GapAnalysisTool(dbManager, idMapper);
+                const result = await gapAnalysisTool.execute({
+                    minDependencies: minDeps,
+                    pluginId,
+                    limit
+                });
+                console.log(result);
+                break;
+            }
+            case 'architecture_mining': {
+                const filePath = args.length > 2 ? args[2] : undefined;
+                const architectureMiningTool = new architecture_mining_1.ArchitectureMiningTool(dbManager, idMapper);
+                const result = await architectureMiningTool.execute({
+                    pluginId,
+                    filePath
+                });
+                console.log(result);
+                break;
+            }
+            default:
+                console.error(`Unknown tool: ${toolName}`);
+                console.error('Use "bootstrap", "semantic_discovery", "system_explanation", "learning_path", "cross_analysis", "gap_analysis", or "architecture_mining"');
+                process.exit(1);
+        }
+    }
+    catch (error) {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    }
+}
+if (require.main === module) {
+    main().catch(error => {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Fatal error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=tool-cli.js.map

package/out/cli/tool-cli.js.map

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package/out/cli/verify-openai-key.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=verify-openai-key.d.ts.map

package/out/cli/verify-openai-key.d.ts.map

@@ -0,0 +1 @@
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