@noyrax/5d-database-plugin 0.1.0

package/out/api/semantic-search-api.js

@@ -0,0 +1,205 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SemanticSearchApi = void 0;
+const embedding_repository_1 = require("../repositories/embedding-repository");
+const importance_repository_1 = require("../repositories/importance-repository");
+/**
+ * API for semantic search over all dimensions using vector similarity.
+ */
+class SemanticSearchApi {
+    constructor(dbManager, embeddingGenerator) {
+        this.vectorWeight = 0.7;
+        this.importanceWeight = 0.3;
+        this.dbManager = dbManager;
+        this.embeddingGenerator = embeddingGenerator;
+    }
+    /**
+     * Performs semantic search across all or specified dimensions.
+     *
+     * @param query Natural language query
+     * @param pluginId Plugin ID
+     * @param options Search options
+     * @returns Promise that resolves to search results sorted by relevance
+     */
+    async search(query, pluginId, options = {}) {
+        if (!this.embeddingGenerator.isConfigured()) {
+            throw new Error('Embedding generator not configured. Cannot perform semantic search.');
+        }
+        const dimensions = options.dimensions || ['X', 'Y', 'Z', 'W', 'T'];
+        const limit = options.limit || 10;
+        const minScore = options.minScore || 0.0;
+        console.log(`[SemanticSearchApi] Searching for "${query}" in dimensions ${dimensions.join(', ')}`);
+        // 1. Generate query embedding
+        const queryEmbedding = await this.embeddingGenerator.generateEmbedding('X', // Dimension doesn't matter for query
+        'query', query);
+        // 2. Search in each dimension
+        const allResults = [];
+        for (const dimension of dimensions) {
+            const dimensionResults = await this.searchDimension(dimension, queryEmbedding, pluginId, minScore);
+            allResults.push(...dimensionResults);
+        }
+        // 3. Sort by combined score (descending)
+        allResults.sort((a, b) => b.score - a.score);
+        // 4. Apply limit
+        return allResults.slice(0, limit);
+    }
+    /**
+     * Searches in a specific dimension using vector similarity.
+     * Uses VSS if available, otherwise falls back to cosine similarity.
+     */
+    async searchDimension(dimension, queryEmbedding, pluginId, minScore) {
+        const db = await this.dbManager.getDatabase('V');
+        const embeddingRepo = new embedding_repository_1.EmbeddingRepository(db);
+        const importanceRepo = new importance_repository_1.ImportanceRepository(db);
+        const vectorDb = this.dbManager.getVectorDatabase();
+        const model = this.embeddingGenerator.getModel();
+        // Try vector database search first if available
+        if (vectorDb && vectorDb.isAvailable()) {
+            try {
+                return await this.searchWithVectorDatabase(dimension, queryEmbedding, pluginId, minScore, vectorDb, embeddingRepo, importanceRepo);
+            }
+            catch (vectorDbError) {
+                console.warn(`[SemanticSearchApi] Vector database search failed, falling back to cosine similarity: ${vectorDbError}`);
+                // Fall through to cosine similarity
+            }
+        }
+        // Fallback: Manual cosine similarity
+        return await this.searchWithCosineSimilarity(dimension, queryEmbedding, pluginId, minScore, embeddingRepo, importanceRepo, model);
+    }
+    /**
+     * Searches using vector database (VSS or external DB).
+     */
+    async searchWithVectorDatabase(dimension, queryEmbedding, pluginId, minScore, vectorDb, embeddingRepo, importanceRepo) {
+        // Perform vector database search
+        const queryEmbeddingFloat32 = new Float32Array(queryEmbedding);
+        const vectorResults = await vectorDb.search(queryEmbeddingFloat32, 100, dimension, pluginId);
+        if (vectorResults.length === 0) {
+            return [];
+        }
+        // Get importance scores
+        const importanceScores = await importanceRepo.getAllByDimension(dimension, pluginId);
+        const importanceMap = new Map();
+        for (const score of importanceScores) {
+            importanceMap.set(score.entity_id, score.combined_score);
+        }
+        // Get embeddings for the rowids
+        const db = await this.dbManager.getDatabase('V');
+        const results = [];
+        for (const vectorResult of vectorResults) {
+            // Get embedding ID from rowid
+            const embeddingId = await vectorDb.getEmbeddingIdFromRowid(vectorResult.rowid);
+            if (!embeddingId) {
+                continue;
+            }
+            // Get embedding by ID
+            const embedding = await embeddingRepo.getById(embeddingId, pluginId);
+            if (!embedding) {
+                continue;
+            }
+            // Use vector database similarity score
+            const vectorScore = vectorResult.similarity || (1 - vectorResult.distance);
+            // Get importance score (default to 0 if not found)
+            const importanceScore = importanceMap.get(embedding.entity_id) || 0;
+            // Combine scores
+            const combinedScore = this.vectorWeight * vectorScore + this.importanceWeight * importanceScore;
+            if (combinedScore >= minScore) {
+                results.push({
+                    dimension,
+                    entityId: embedding.entity_id,
+                    externalId: embedding.external_id,
+                    score: combinedScore,
+                    vectorScore,
+                    importanceScore,
+                    entityRef: {
+                        dimension,
+                        entity_id: embedding.entity_id,
+                        external_id: embedding.external_id
+                    }
+                });
+            }
+        }
+        return results;
+    }
+    /**
+     * Gets embedding by rowid.
+     */
+    async getEmbeddingByRowid(db, rowid, pluginId) {
+        return new Promise((resolve, reject) => {
+            db.get(`SELECT * FROM embeddings WHERE rowid = ? AND plugin_id = ?`, [rowid, pluginId], (err, row) => {
+                if (err) {
+                    reject(err);
+                }
+                else {
+                    resolve(row || null);
+                }
+            });
+        });
+    }
+    /**
+     * Searches using manual cosine similarity (fallback).
+     */
+    async searchWithCosineSimilarity(dimension, queryEmbedding, pluginId, minScore, embeddingRepo, importanceRepo, model) {
+        // Get all embeddings for this dimension
+        const embeddings = await embeddingRepo.getAllByDimension(dimension, pluginId, model);
+        if (embeddings.length === 0) {
+            return [];
+        }
+        // Get importance scores
+        const importanceScores = await importanceRepo.getAllByDimension(dimension, pluginId);
+        const importanceMap = new Map();
+        for (const score of importanceScores) {
+            importanceMap.set(score.entity_id, score.combined_score);
+        }
+        // Calculate vector similarity for each embedding
+        const results = [];
+        for (const embedding of embeddings) {
+            // Convert Buffer to Float32Array
+            const embeddingVector = new Float32Array(embedding.embedding_vector.buffer, embedding.embedding_vector.byteOffset, embedding.embedding_vector.length / 4);
+            // Calculate cosine similarity
+            const vectorScore = this.cosineSimilarity(queryEmbedding, Array.from(embeddingVector));
+            // Get importance score (default to 0 if not found)
+            const importanceScore = importanceMap.get(embedding.entity_id) || 0;
+            // Combine scores
+            const combinedScore = this.vectorWeight * vectorScore + this.importanceWeight * importanceScore;
+            if (combinedScore >= minScore) {
+                results.push({
+                    dimension,
+                    entityId: embedding.entity_id,
+                    externalId: embedding.external_id,
+                    score: combinedScore,
+                    vectorScore,
+                    importanceScore,
+                    entityRef: {
+                        dimension,
+                        entity_id: embedding.entity_id,
+                        external_id: embedding.external_id
+                    }
+                });
+            }
+        }
+        return results;
+    }
+    /**
+     * Calculates cosine similarity between two vectors.
+     */
+    cosineSimilarity(vecA, vecB) {
+        if (vecA.length !== vecB.length) {
+            throw new Error(`Vector length mismatch: ${vecA.length} vs ${vecB.length}`);
+        }
+        let dotProduct = 0;
+        let normA = 0;
+        let normB = 0;
+        for (let i = 0; i < vecA.length; i++) {
+            dotProduct += vecA[i] * vecB[i];
+            normA += vecA[i] * vecA[i];
+            normB += vecB[i] * vecB[i];
+        }
+        const denominator = Math.sqrt(normA) * Math.sqrt(normB);
+        if (denominator === 0) {
+            return 0;
+        }
+        return dotProduct / denominator;
+    }
+}
+exports.SemanticSearchApi = SemanticSearchApi;
+//# sourceMappingURL=semantic-search-api.js.map

package/out/api/semantic-search-api.js.map

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package/out/api/symbol-api.d.ts

@@ -0,0 +1,22 @@
+import { MultiDbManager } from '../core/multi-db-manager';
+import { Symbol } from '../models/symbol';
+/**
+ * API for Y-Dimension: Symbols
+ */
+export declare class SymbolApi {
+    private dbManager;
+    constructor(dbManager: MultiDbManager);
+    /**
+     * Gets a symbol by external symbol ID.
+     */
+    getSymbolById(symbolId: string, pluginId: string): Promise<Symbol | null>;
+    /**
+     * Gets all symbols for a plugin.
+     */
+    getAllSymbols(pluginId: string): Promise<Symbol[]>;
+    /**
+     * Gets symbols by file path.
+     */
+    getSymbolsByPath(path: string, pluginId: string): Promise<Symbol[]>;
+}
+//# sourceMappingURL=symbol-api.d.ts.map

package/out/api/symbol-api.d.ts.map

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package/out/api/symbol-api.js

@@ -0,0 +1,38 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SymbolApi = void 0;
+const symbol_repository_1 = require("../repositories/symbol-repository");
+/**
+ * API for Y-Dimension: Symbols
+ */
+class SymbolApi {
+    constructor(dbManager) {
+        this.dbManager = dbManager;
+    }
+    /**
+     * Gets a symbol by external symbol ID.
+     */
+    async getSymbolById(symbolId, pluginId) {
+        const db = await this.dbManager.getDatabase('Y');
+        const repository = new symbol_repository_1.SymbolRepository(db);
+        return repository.getBySymbolId(symbolId, pluginId);
+    }
+    /**
+     * Gets all symbols for a plugin.
+     */
+    async getAllSymbols(pluginId) {
+        const db = await this.dbManager.getDatabase('Y');
+        const repository = new symbol_repository_1.SymbolRepository(db);
+        return repository.getAll(pluginId);
+    }
+    /**
+     * Gets symbols by file path.
+     */
+    async getSymbolsByPath(path, pluginId) {
+        const db = await this.dbManager.getDatabase('Y');
+        const repository = new symbol_repository_1.SymbolRepository(db);
+        return repository.findByPath(path, pluginId);
+    }
+}
+exports.SymbolApi = SymbolApi;
+//# sourceMappingURL=symbol-api.js.map

package/out/api/symbol-api.js.map

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package/out/api/vector-api.d.ts

@@ -0,0 +1,26 @@
+import { MultiDbManager } from '../core/multi-db-manager';
+/**
+ * API for V-Dimension: Vectors
+ * Provides access to embeddings, importance scores, and navigation metadata.
+ */
+export declare class VectorApi {
+    private dbManager;
+    constructor(dbManager: MultiDbManager);
+    /**
+     * Gets embedding for an entity.
+     */
+    getEmbedding(dimension: 'X' | 'Y' | 'Z' | 'W' | 'T', entityId: string, pluginId: string, model: string): Promise<import("../repositories/embedding-repository").Embedding | null>;
+    /**
+     * Gets importance score for an entity.
+     */
+    getImportanceScore(dimension: 'X' | 'Y' | 'Z' | 'W' | 'T', entityId: string, pluginId: string): Promise<import("../repositories/importance-repository").ImportanceScore | null>;
+    /**
+     * Gets navigation metadata for an entity.
+     */
+    getNavigationMetadata(dimension: 'X' | 'Y' | 'Z' | 'W' | 'T', entityId: string, pluginId: string): Promise<import("../repositories/navigation-repository").NavigationMetadata | null>;
+    /**
+     * Gets all entry points for a dimension.
+     */
+    getEntryPoints(dimension: 'X' | 'Y' | 'Z' | 'W' | 'T', pluginId: string): Promise<import("../repositories/navigation-repository").NavigationMetadata[]>;
+}
+//# sourceMappingURL=vector-api.d.ts.map

package/out/api/vector-api.d.ts.map

@@ -0,0 +1 @@
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package/out/api/vector-api.js

@@ -0,0 +1,49 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.VectorApi = void 0;
+const embedding_repository_1 = require("../repositories/embedding-repository");
+const importance_repository_1 = require("../repositories/importance-repository");
+const navigation_repository_1 = require("../repositories/navigation-repository");
+/**
+ * API for V-Dimension: Vectors
+ * Provides access to embeddings, importance scores, and navigation metadata.
+ */
+class VectorApi {
+    constructor(dbManager) {
+        this.dbManager = dbManager;
+    }
+    /**
+     * Gets embedding for an entity.
+     */
+    async getEmbedding(dimension, entityId, pluginId, model) {
+        const db = await this.dbManager.getDatabase('V');
+        const embeddingRepo = new embedding_repository_1.EmbeddingRepository(db);
+        return embeddingRepo.getByEntity(dimension, entityId, pluginId, model);
+    }
+    /**
+     * Gets importance score for an entity.
+     */
+    async getImportanceScore(dimension, entityId, pluginId) {
+        const db = await this.dbManager.getDatabase('V');
+        const importanceRepo = new importance_repository_1.ImportanceRepository(db);
+        return importanceRepo.getByEntity(dimension, entityId, pluginId);
+    }
+    /**
+     * Gets navigation metadata for an entity.
+     */
+    async getNavigationMetadata(dimension, entityId, pluginId) {
+        const db = await this.dbManager.getDatabase('V');
+        const navRepo = new navigation_repository_1.NavigationRepository(db);
+        return navRepo.getByEntity(dimension, entityId, pluginId);
+    }
+    /**
+     * Gets all entry points for a dimension.
+     */
+    async getEntryPoints(dimension, pluginId) {
+        const db = await this.dbManager.getDatabase('V');
+        const navRepo = new navigation_repository_1.NavigationRepository(db);
+        return navRepo.getEntryPoints(dimension, pluginId);
+    }
+}
+exports.VectorApi = VectorApi;
+//# sourceMappingURL=vector-api.js.map

package/out/api/vector-api.js.map

@@ -0,0 +1 @@
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package/out/cli/embedding-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=embedding-cli.d.ts.map

package/out/cli/embedding-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"embedding-cli.d.ts","sourceRoot":"","sources":["../../src/cli/embedding-cli.ts"],"names":[],"mappings":""}

package/out/cli/embedding-cli.js

@@ -0,0 +1,151 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const multi_db_manager_1 = require("../core/multi-db-manager");
+const embedding_pipeline_1 = require("../embedding/embedding-pipeline");
+const embedding_generator_1 = require("../embedding/embedding-generator");
+const docs_path_resolver_1 = require("../core/docs-path-resolver");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    let currentPath = workspaceRoot;
+    const maxDepth = 5;
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            return;
+        }
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break;
+        }
+        currentPath = parentPath;
+    }
+}
+/**
+ * Validates that docs/ directory exists.
+ */
+function validateDocsDirectory(workspaceRoot) {
+    const docsPath = docs_path_resolver_1.DocsPathResolver.findDocsDirectoryFromPath(workspaceRoot);
+    if (!docsPath) {
+        console.error('ERROR: docs/ directory not found in workspace or parent directories.');
+        console.error('Please run Documentation System Plugin (Noyrax) first to generate docs/ directory.');
+        return false;
+    }
+    return true;
+}
+/**
+ * CLI tool for syncing embeddings (V-Dimension).
+ * Usage: embedding-cli <workspace-root>
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length < 1) {
+        console.error('Usage: embedding-cli <workspace-root>');
+        console.error('');
+        console.error('This tool syncs embeddings for all 5 dimensions (X, Y, Z, W, T).');
+        console.error('It requires:');
+        console.error('  - OPENAI_API_KEY in .env file or environment');
+        console.error('  - ChromaDB Server running (on Windows) or SQLite VSS (on macOS/Linux)');
+        console.error('  - Existing 5D database with ingested data');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    // Validate workspace root exists
+    if (!fs.existsSync(workspaceRoot)) {
+        console.error(`ERROR: Workspace root does not exist: ${workspaceRoot}`);
+        process.exit(1);
+    }
+    // Load .env file (required for OpenAI API key)
+    loadEnvFile(workspaceRoot);
+    // Check for OpenAI API key
+    if (!process.env.OPENAI_API_KEY) {
+        console.error('ERROR: OPENAI_API_KEY not found in environment or .env file');
+        console.error('Embedding generation requires OpenAI API key.');
+        process.exit(1);
+    }
+    // Validate docs/ directory (for context)
+    validateDocsDirectory(workspaceRoot);
+    try {
+        console.log(`[Embedding CLI] Starting embedding sync for workspace: ${workspaceRoot}`);
+        const dbManager = new multi_db_manager_1.MultiDbManager(workspaceRoot);
+        const pluginId = dbManager.getPluginId();
+        // Check vector database availability
+        const vectorDb = dbManager.getVectorDatabase();
+        if (vectorDb) {
+            if (vectorDb.isAvailable()) {
+                console.log(`[Embedding CLI] Vector database available: ${vectorDb.constructor.name}`);
+            }
+            else {
+                console.warn('[Embedding CLI] Vector database initialized but not available.');
+                console.warn('[Embedding CLI] Will store embeddings in SQLite only (fallback to cosine similarity).');
+                console.warn('[Embedding CLI] On Windows: Make sure ChromaDB server is running: chroma run --host localhost --port 8000');
+            }
+        }
+        else {
+            console.warn('[Embedding CLI] Vector database not initialized. Embeddings will be stored in SQLite only.');
+        }
+        const embeddingGenerator = new embedding_generator_1.EmbeddingGenerator();
+        const embeddingPipeline = new embedding_pipeline_1.EmbeddingPipeline(dbManager, embeddingGenerator);
+        // Sync embeddings for all dimensions
+        await embeddingPipeline.syncEmbeddings(pluginId);
+        console.log('[Embedding CLI] Embedding sync completed successfully!');
+    }
+    catch (error) {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    }
+}
+if (require.main === module) {
+    main().catch(error => {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Fatal error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=embedding-cli.js.map

package/out/cli/embedding-cli.js.map

@@ -0,0 +1 @@
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package/out/cli/ingest-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=ingest-cli.d.ts.map

package/out/cli/ingest-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ingest-cli.d.ts","sourceRoot":"","sources":["../../src/cli/ingest-cli.ts"],"names":[],"mappings":""}