@noyrax/5d-database-plugin 0.1.0

package/out/cli/ingest-cli.js

@@ -0,0 +1,145 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const multi_db_manager_1 = require("../core/multi-db-manager");
+const migration_manager_1 = require("../core/migration-manager");
+const ingestion_orchestrator_1 = require("../services/ingestion-orchestrator");
+const docs_path_resolver_1 = require("../core/docs-path-resolver");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    // Try to find .env file in workspace root or parent directories
+    let currentPath = workspaceRoot;
+    const maxDepth = 5; // Prevent infinite loops
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            console.log(`[Ingest CLI] Loaded .env file from: ${envPath}`);
+            return;
+        }
+        // Try parent directory
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break; // Reached filesystem root
+        }
+        currentPath = parentPath;
+    }
+    console.warn('[Ingest CLI] No .env file found. Using environment variables only.');
+}
+/**
+ * CLI tool for ingesting documentation into the 5D database.
+ * Usage: node ingest-cli.js <workspace-root> [--full]
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length === 0) {
+        console.error('Usage: ingest-cli <workspace-root> [--full]');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    const isFull = args.includes('--full');
+    // Load .env file from workspace root or parent directories
+    loadEnvFile(workspaceRoot);
+    if (process.env.OPENAI_API_KEY) {
+        console.log('[Ingest CLI] OpenAI API key loaded from .env file');
+    }
+    else {
+        console.warn('[Ingest CLI] WARNING: OPENAI_API_KEY not found in .env file or environment variables');
+    }
+    console.log(`Ingesting documentation from: ${workspaceRoot}`);
+    console.log(`Mode: ${isFull ? 'full' : 'incremental'}`);
+    const dbManager = new multi_db_manager_1.MultiDbManager(workspaceRoot);
+    const pluginRoot = path.resolve(__dirname, '..', '..');
+    const migrationManager = new migration_manager_1.MigrationManager(dbManager, pluginRoot);
+    // Find docs directory (dependency on Documentation System Plugin)
+    const docsPath = docs_path_resolver_1.DocsPathResolver.findDocsDirectoryFromPath(workspaceRoot);
+    if (!docsPath) {
+        console.error('ERROR: docs/ directory not found in workspace or parent directories.');
+        console.error('Please run Documentation System Plugin (Noyrax) first to generate docs/ directory.');
+        console.error(`Workspace root: ${workspaceRoot}`);
+        process.exit(1);
+    }
+    console.log(`Found docs directory: ${docsPath}`);
+    // Validate that required documentation files exist
+    const requiredPaths = [
+        { path: path.join(docsPath, 'modules'), name: 'modules/' },
+        { path: path.join(docsPath, 'index', 'symbols.jsonl'), name: 'index/symbols.jsonl' },
+        { path: path.join(docsPath, 'system', 'DEPENDENCY_GRAPH.md'), name: 'system/DEPENDENCY_GRAPH.md' },
+        { path: path.join(docsPath, 'adr'), name: 'adr/' },
+        { path: path.join(docsPath, 'system', 'CHANGE_REPORT.md'), name: 'system/CHANGE_REPORT.md' }
+    ];
+    const missingPaths = [];
+    for (const required of requiredPaths) {
+        if (!fs.existsSync(required.path)) {
+            missingPaths.push(required.name);
+        }
+    }
+    if (missingPaths.length > 0) {
+        console.warn('WARNING: Some required documentation files are missing:');
+        missingPaths.forEach(p => console.warn(`  - ${p}`));
+        console.warn('Please ensure Documentation System Plugin has generated complete documentation.');
+    }
+    const ingestionOrchestrator = new ingestion_orchestrator_1.IngestionOrchestrator(dbManager, migrationManager, docsPath);
+    try {
+        await migrationManager.migrateAll();
+        console.log('Database migrations completed');
+        const pluginId = dbManager.getPluginId();
+        if (isFull) {
+            await ingestionOrchestrator.ingestFull(workspaceRoot, pluginId, docsPath);
+        }
+        else {
+            await ingestionOrchestrator.ingestIncremental(workspaceRoot, pluginId, docsPath);
+        }
+        console.log('Ingestion completed successfully');
+        process.exit(0);
+    }
+    catch (error) {
+        console.error('Ingestion failed:', error);
+        process.exit(1);
+    }
+}
+if (require.main === module) {
+    main().catch(error => {
+        console.error('Fatal error:', error);
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=ingest-cli.js.map

package/out/cli/ingest-cli.js.map

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package/out/cli/mcp-server-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=mcp-server-cli.d.ts.map

package/out/cli/mcp-server-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"mcp-server-cli.d.ts","sourceRoot":"","sources":["../../src/cli/mcp-server-cli.ts"],"names":[],"mappings":""}

package/out/cli/mcp-server-cli.js

@@ -0,0 +1,159 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const server_1 = require("../mcp/server");
+const docs_path_resolver_1 = require("../core/docs-path-resolver");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    // Try to find .env file in workspace root or parent directories
+    let currentPath = workspaceRoot;
+    const maxDepth = 5; // Prevent infinite loops
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            // Don't log to stdout - MCP uses stdout for protocol
+            return;
+        }
+        // Try parent directory
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break; // Reached filesystem root
+        }
+        currentPath = parentPath;
+    }
+}
+/**
+ * Validates that docs/ directory exists (dependency on Documentation System Plugin).
+ * Logs errors to stderr (not stdout, as MCP uses stdout for protocol).
+ */
+function validateDocsDirectory(workspaceRoot) {
+    const docsPath = docs_path_resolver_1.DocsPathResolver.findDocsDirectoryFromPath(workspaceRoot);
+    if (!docsPath) {
+        const error = `ERROR: docs/ directory not found in workspace or parent directories.\n` +
+            `Please run Documentation System Plugin (Noyrax) first to generate docs/ directory.\n` +
+            `Workspace root: ${workspaceRoot}`;
+        // Use stderr for errors - MCP protocol uses stdout
+        process.stderr.write(error + '\n');
+        return false;
+    }
+    // Validate that required subdirectories/files exist
+    const requiredPaths = [
+        path.join(docsPath, 'modules'),
+        path.join(docsPath, 'index', 'symbols.jsonl'),
+        path.join(docsPath, 'system', 'DEPENDENCY_GRAPH.md'),
+        path.join(docsPath, 'adr'),
+        path.join(docsPath, 'system', 'CHANGE_REPORT.md')
+    ];
+    const missingPaths = [];
+    for (const requiredPath of requiredPaths) {
+        if (!fs.existsSync(requiredPath)) {
+            missingPaths.push(requiredPath);
+        }
+    }
+    if (missingPaths.length > 0) {
+        const error = `WARNING: Some required documentation files are missing:\n` +
+            missingPaths.map(p => `  - ${p}`).join('\n') +
+            `\nPlease ensure Documentation System Plugin has generated complete documentation.`;
+        process.stderr.write(error + '\n');
+        // Don't fail - some files might be optional, but warn
+    }
+    return true;
+}
+/**
+ * CLI entry point for MCP Server.
+ * Usage: node mcp-server-cli.js <workspace-root>
+ *
+ * Starts the MCP server and communicates via stdin/stdout (JSON-RPC 2.0).
+ * Errors are written to stderr to avoid interfering with MCP protocol.
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length === 0) {
+        const usage = 'Usage: mcp-server-cli <workspace-root>\n' +
+            '\n' +
+            'Starts the 5D Database MCP Server for LLM-Agent integration.\n' +
+            'The server communicates via stdin/stdout using JSON-RPC 2.0 protocol.\n' +
+            '\n' +
+            'Prerequisites:\n' +
+            '  - Documentation System Plugin (Noyrax) must have generated docs/ directory\n' +
+            '  - 5D Database Plugin must have ingested the documentation (run ingest-cli first)';
+        process.stderr.write(usage + '\n');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    // Validate workspace root exists
+    if (!fs.existsSync(workspaceRoot)) {
+        process.stderr.write(`ERROR: Workspace root does not exist: ${workspaceRoot}\n`);
+        process.exit(1);
+    }
+    // Load .env file (silently - don't log to stdout)
+    loadEnvFile(workspaceRoot);
+    // Validate docs/ directory exists (dependency on Documentation System Plugin)
+    if (!validateDocsDirectory(workspaceRoot)) {
+        process.exit(1);
+    }
+    try {
+        // Create and start MCP server
+        const server = new server_1.DatabaseMcpServer(workspaceRoot);
+        await server.start();
+        // Server runs indefinitely, communicating via stdin/stdout
+    }
+    catch (error) {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        process.stderr.write(`Fatal error starting MCP server: ${errorMsg}\n`);
+        if (error instanceof Error && error.stack) {
+            process.stderr.write(`Stack trace: ${error.stack}\n`);
+        }
+        process.exit(1);
+    }
+}
+if (require.main === module) {
+    main().catch(error => {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        process.stderr.write(`Fatal error: ${errorMsg}\n`);
+        if (error instanceof Error && error.stack) {
+            process.stderr.write(`Stack trace: ${error.stack}\n`);
+        }
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=mcp-server-cli.js.map

package/out/cli/mcp-server-cli.js.map

@@ -0,0 +1 @@
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package/out/cli/query-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=query-cli.d.ts.map

package/out/cli/query-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"query-cli.d.ts","sourceRoot":"","sources":["../../src/cli/query-cli.ts"],"names":[],"mappings":""}

package/out/cli/query-cli.js

@@ -0,0 +1,217 @@
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
+const fs = __importStar(require("fs"));
+const dotenv_1 = require("dotenv");
+const multi_db_manager_1 = require("../core/multi-db-manager");
+const module_api_1 = require("../api/module-api");
+const symbol_api_1 = require("../api/symbol-api");
+const dependency_api_1 = require("../api/dependency-api");
+const adr_api_1 = require("../api/adr-api");
+const change_api_1 = require("../api/change-api");
+const docs_path_resolver_1 = require("../core/docs-path-resolver");
+/**
+ * Loads .env file from workspace root or parent directories.
+ */
+function loadEnvFile(workspaceRoot) {
+    let currentPath = workspaceRoot;
+    const maxDepth = 5;
+    for (let depth = 0; depth < maxDepth; depth++) {
+        const envPath = path.join(currentPath, '.env');
+        if (fs.existsSync(envPath)) {
+            (0, dotenv_1.config)({ path: envPath });
+            return;
+        }
+        const parentPath = path.dirname(currentPath);
+        if (parentPath === currentPath) {
+            break;
+        }
+        currentPath = parentPath;
+    }
+}
+/**
+ * Validates that docs/ directory exists.
+ */
+function validateDocsDirectory(workspaceRoot) {
+    const docsPath = docs_path_resolver_1.DocsPathResolver.findDocsDirectoryFromPath(workspaceRoot);
+    if (!docsPath) {
+        console.error('ERROR: docs/ directory not found in workspace or parent directories.');
+        console.error('Please run Documentation System Plugin (Noyrax) first to generate docs/ directory.');
+        return false;
+    }
+    return true;
+}
+/**
+ * CLI tool for querying the 5D database directly.
+ * Usage: query-cli <workspace-root> <command> <args...>
+ *
+ * Commands:
+ *   modules <filePath>        - Query module by file path
+ *   symbols <path|symbolId>   - Query symbols by path or symbol ID
+ *   dependencies <--from <path>|--to <path>> - Query dependencies
+ *   adrs <--number <num>|--path <path>> - Query ADRs
+ *   changes                   - Query change reports
+ */
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length < 2) {
+        console.error('Usage: query-cli <workspace-root> <command> <args...>');
+        console.error('');
+        console.error('Commands:');
+        console.error('  modules <filePath>              - Query module by file path');
+        console.error('  symbols <path|symbolId>         - Query symbols by path or symbol ID');
+        console.error('  dependencies --from <path>      - Query dependencies by from module');
+        console.error('  dependencies --to <path>        - Query dependencies by to module');
+        console.error('  adrs --number <num>             - Query ADR by number');
+        console.error('  adrs --path <path>              - Query ADRs by file path');
+        console.error('  changes                         - Query all change reports');
+        process.exit(1);
+    }
+    const workspaceRoot = path.resolve(args[0]);
+    const command = args[1];
+    // Validate workspace root exists
+    if (!fs.existsSync(workspaceRoot)) {
+        console.error(`ERROR: Workspace root does not exist: ${workspaceRoot}`);
+        process.exit(1);
+    }
+    // Load .env file
+    loadEnvFile(workspaceRoot);
+    // Validate docs/ directory (for context, but not strictly required for queries)
+    validateDocsDirectory(workspaceRoot);
+    const dbManager = new multi_db_manager_1.MultiDbManager(workspaceRoot);
+    const pluginId = dbManager.getPluginId();
+    try {
+        switch (command) {
+            case 'modules': {
+                if (args.length < 3) {
+                    console.error('Usage: query-cli <workspace-root> modules <filePath>');
+                    process.exit(1);
+                }
+                const filePath = args[2];
+                const moduleApi = new module_api_1.ModuleApi(dbManager);
+                const module = await moduleApi.getModuleByPath(filePath, pluginId);
+                if (module) {
+                    console.log(JSON.stringify(module, null, 2));
+                }
+                else {
+                    console.error(`Module not found: ${filePath}`);
+                    process.exit(1);
+                }
+                break;
+            }
+            case 'symbols': {
+                if (args.length < 3) {
+                    console.error('Usage: query-cli <workspace-root> symbols <path|symbolId>');
+                    process.exit(1);
+                }
+                const symbolApi = new symbol_api_1.SymbolApi(dbManager);
+                const identifier = args[2];
+                let symbols;
+                // Try as symbolId first (usually UUID-like), then as path
+                if (identifier.includes('/') || identifier.includes('\\')) {
+                    symbols = await symbolApi.getSymbolsByPath(identifier, pluginId);
+                }
+                else {
+                    const symbol = await symbolApi.getSymbolById(identifier, pluginId);
+                    symbols = symbol ? [symbol] : [];
+                }
+                console.log(JSON.stringify(symbols, null, 2));
+                break;
+            }
+            case 'dependencies': {
+                const dependencyApi = new dependency_api_1.DependencyApi(dbManager);
+                let dependencies;
+                if (args.length >= 4 && args[2] === '--from') {
+                    dependencies = await dependencyApi.getDependenciesByFromModule(args[3], pluginId);
+                }
+                else if (args.length >= 4 && args[2] === '--to') {
+                    dependencies = await dependencyApi.getDependenciesByToModule(args[3], pluginId);
+                }
+                else {
+                    dependencies = await dependencyApi.getAllDependencies(pluginId);
+                }
+                console.log(JSON.stringify(dependencies, null, 2));
+                break;
+            }
+            case 'adrs': {
+                const adrApi = new adr_api_1.AdrApi(dbManager);
+                let adrs;
+                if (args.length >= 4 && args[2] === '--number') {
+                    const adr = await adrApi.getAdrByNumber(args[3], pluginId);
+                    adrs = adr ? [adr] : [];
+                }
+                else if (args.length >= 4 && args[2] === '--path') {
+                    adrs = await adrApi.getAdrsByFilePath(args[3], pluginId);
+                }
+                else {
+                    adrs = await adrApi.getAllAdrs(pluginId);
+                }
+                console.log(JSON.stringify(adrs, null, 2));
+                break;
+            }
+            case 'changes': {
+                const changeApi = new change_api_1.ChangeApi(dbManager);
+                const changes = await changeApi.getAllChangeReports(pluginId);
+                console.log(JSON.stringify(changes, null, 2));
+                break;
+            }
+            default:
+                console.error(`Unknown command: ${command}`);
+                console.error('Use "modules", "symbols", "dependencies", "adrs", or "changes"');
+                process.exit(1);
+        }
+    }
+    catch (error) {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    }
+}
+if (require.main === module) {
+    main().catch(error => {
+        const errorMsg = error instanceof Error ? error.message : String(error);
+        console.error(`Fatal error: ${errorMsg}`);
+        if (error instanceof Error && error.stack) {
+            console.error(`Stack trace: ${error.stack}`);
+        }
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=query-cli.js.map

package/out/cli/query-cli.js.map

@@ -0,0 +1 @@
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package/out/cli/semantic-search-cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=semantic-search-cli.d.ts.map

package/out/cli/semantic-search-cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"semantic-search-cli.d.ts","sourceRoot":"","sources":["../../src/cli/semantic-search-cli.ts"],"names":[],"mappings":""}