@nfdi4plants/arctrl 3.0.0-beta.5 → 3.0.0-beta.6

package/dist/ts/ts/Spreadsheet/CollectionAux.js

@@ -1,7 +1,8 @@
-import { skip } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { some } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { initialize, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
-import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { skip, maxBy, tryFind } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { value, some } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { initialize, skip as skip$1, tryItem, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { comparePrimitives, defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { tryPick, isEmpty, reverse, cons, head, tail, empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
 import { tryGetValue } from '../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { FSharpRef } from '../../node_modules/@fable-org/fable-library-js/Types.js';
 
@@ -12,12 +13,68 @@ function Seq_trySkip(i, s) {
     return void 0;
   }
 }
+function Array_ofIndexedSeq(s) {
+  return initialize(1 + maxBy((tuple) => tuple[0], s, {
+    Compare: comparePrimitives
+  })[0], (i) => {
+    const matchValue = tryFind((arg) => i === arg[0], s);
+    if (matchValue == null) {
+      return "";
+    } else {
+      const i_1 = value(matchValue)[0] | 0;
+      return value(matchValue)[1];
+    }
+  });
+}
+function Array_trySkip(i, a) {
+  try {
+    return skip$1(i, a);
+  } catch (matchValue) {
+    return void 0;
+  }
+}
+function Array_tryItemDefault(i, d, a) {
+  const matchValue = tryItem(i, a);
+  if (matchValue == null) {
+    return d;
+  } else {
+    return value(matchValue);
+  }
+}
 function Array_map4(f, aa, ba, ca, da) {
   if (!(aa.length === ba.length && ba.length === ca.length && ca.length === da.length)) {
     throw new Error("");
   }
   return initialize(aa.length, (i) => f(item(i, aa), item(i, ba), item(i, ca), item(i, da)));
 }
+function List_tryPickDefault(chooser, d, list) {
+  const matchValue = tryPick(chooser, list);
+  if (matchValue == null) {
+    return d;
+  } else {
+    return value(matchValue);
+  }
+}
+function List_unzip4(l) {
+  const loop = (la_mut, lb_mut, lc_mut, ld_mut, l_1_mut) => {
+    loop:
+      while (true) {
+        const la = la_mut, lb = lb_mut, lc = lc_mut, ld = ld_mut, l_1 = l_1_mut;
+        if (isEmpty(l_1)) {
+          return [reverse(la), reverse(lb), reverse(lc), reverse(ld)];
+        } else {
+          la_mut = cons(head(l_1)[0], la);
+          lb_mut = cons(head(l_1)[1], lb);
+          lc_mut = cons(head(l_1)[2], lc);
+          ld_mut = cons(head(l_1)[3], ld);
+          l_1_mut = tail(l_1);
+          continue loop;
+        }
+        break;
+      }
+  };
+  return loop(empty(), empty(), empty(), empty(), l);
+}
 function Dictionary_tryGetValue(k, dict) {
   let patternInput;
   let outArg = defaultOf();
@@ -30,5 +87,18 @@ function Dictionary_tryGetValue(k, dict) {
     return void 0;
   }
 }
+function Dictionary_tryGetString(k, dict) {
+  let patternInput;
+  let outArg = defaultOf();
+  patternInput = [tryGetValue(dict, k, new FSharpRef(() => outArg, (v) => {
+    outArg = v;
+  })), outArg];
+  const v_1 = patternInput[1];
+  if (patternInput[0] && v_1.trim() !== "") {
+    return v_1.trim();
+  } else {
+    return void 0;
+  }
+}
 
-export { Array_map4, Dictionary_tryGetValue, Seq_trySkip };
+export { Array_map4, Array_ofIndexedSeq, Array_tryItemDefault, Array_trySkip, Dictionary_tryGetString, Dictionary_tryGetValue, List_tryPickDefault, List_unzip4, Seq_trySkip };

package/dist/ts/ts/Spreadsheet/DataMap.js

@@ -1,6 +1,6 @@
 import { toFail, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { tryPick, forAll } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
-import { toFsWorksheet, tryFromFsWorksheet } from './DataMapTable/DataMapTable.js';
+import { tryFromFsWorksheet, toFsWorksheet } from './DataMapTable/DataMapTable.js';
 import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 import { DataMap_init } from '../Core/DataMap.js';
 import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';

package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js

@@ -1,10 +1,10 @@
-import { toFsCells, fromFsCells } from './DataMapHeader.js';
-import { transpose, map, ofArray, singleton } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { fromFsCells, toFsCells } from './DataMapHeader.js';
+import { map, ofArray, singleton, transpose } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
 import { DataContext__get_Explication, DataContext__get_Unit, DataContext__get_ObjectType, DataContext__get_Description, DataContext__get_GeneratedBy, DataContext__get_Label } from '../../Core/DataContext.js';
-import { toList, delay, collect, append, map as map$1, tryFind, singleton as singleton$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { toList, collect, map as map$1, delay, append, singleton as singleton$1, tryFind } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
-import { defaultArg, bind, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { defaultArg, value, bind } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
 
 function setFromFsColumns(dc, columns) {

package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js

@@ -1,6 +1,6 @@
-import { map, isEmpty, head, tail, tryFindIndex, item } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { map, item, isEmpty, head, tail, tryFindIndex } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
-import { value, map as map$1, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { map as map$1, unwrap, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Data } from '../../Core/Data.js';
 import { DataContext__set_Explication_279AAFF2, DataContext__set_Unit_279AAFF2, DataContext__set_ObjectType_279AAFF2, DataContext__set_Description_6DFDD678, DataContext__set_GeneratedBy_6DFDD678, DataContext__set_Label_6DFDD678 } from '../../Core/DataContext.js';
@@ -48,13 +48,13 @@ function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
     }
   };
   const cellValues = map((c) => c.ValueAsString(), cells);
-  let matchResult;
+  let matchResult, header;
   if (!isEmpty(cellValues)) {
     const activePatternResult = $007CAC$007C_$007C(head(cellValues));
     if (activePatternResult != null) {
       if (isEmpty(tail(cellValues))) {
         matchResult = 0;
-        value(activePatternResult);
+        header = value(activePatternResult);
       } else {
         matchResult = 1;
       }
@@ -68,7 +68,7 @@ function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
     case 0:
       return (cells_1) => ActivePattern_ontologyAnnotationFromFsCells(void 0, void 0, cells_1);
     default: {
-      let matchResult_1;
+      let matchResult_1, header_1;
       if (!isEmpty(cellValues)) {
         const activePatternResult_1 = $007CAC$007C_$007C(head(cellValues));
         if (activePatternResult_1 != null) {
@@ -78,7 +78,7 @@ function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
                 if ($007CTANColumnHeaderRaw$007C_$007C(head(tail(tail(cellValues)))) != null) {
                   if (isEmpty(tail(tail(tail(cellValues))))) {
                     matchResult_1 = 0;
-                    value(activePatternResult_1);
+                    header_1 = value(activePatternResult_1);
                   } else {
                     matchResult_1 = 1;
                   }
@@ -104,7 +104,7 @@ function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
         case 0:
           return (cells_2) => ActivePattern_ontologyAnnotationFromFsCells(1, 2, cells_2);
         default: {
-          let matchResult_2;
+          let matchResult_2, header_2;
           if (!isEmpty(cellValues)) {
             const activePatternResult_4 = $007CAC$007C_$007C(head(cellValues));
             if (activePatternResult_4 != null) {
@@ -114,7 +114,7 @@ function ActivePattern_$007CTerm$007C_$007C(categoryString, cells) {
                     if ($007CTSRColumnHeaderRaw$007C_$007C(head(tail(tail(cellValues)))) != null) {
                       if (isEmpty(tail(tail(tail(cellValues))))) {
                         matchResult_2 = 0;
-                        value(activePatternResult_4);
+                        header_2 = value(activePatternResult_4);
                       } else {
                         matchResult_2 = 1;
                       }

package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js

@@ -1,13 +1,13 @@
-import { ofArray, length, head, iterateIndexed, iterate, exists } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofArray, exists, iterate, length, head, iterateIndexed } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { Aux_List_groupWhen } from '../AnnotationTable/ArcTable.js';
-import { tryFind, item, toArray, delay, toList, map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { tryFind, item, toArray, delay, map, toList } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { FsWorksheet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
 import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { DataContext_$ctor_Z780A8A2A } from '../../Core/DataContext.js';
 import { rangeDouble } from '../../../node_modules/@fable-org/fable-library-js/Range.js';
-import { toFsColumns, setFromFsColumns } from './DataMapColumn.js';
+import { setFromFsColumns, toFsColumns } from './DataMapColumn.js';
 import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
-import { DataMap__get_DataContexts, DataMap_$ctor_4E3220A7 } from '../../Core/DataMap.js';
+import { DataMap_$ctor_4E3220A7, DataMap__get_DataContexts } from '../../Core/DataMap.js';
 import { FsRangeAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js';
 import { FsAddress } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js';
 import { Dictionary_tryGet } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js';

package/dist/ts/ts/Spreadsheet/Metadata/Assays.js

@@ -1,11 +1,11 @@
-import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofArray, length, singleton, initialize, map as map$1, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
-import { unwrap, value, map as map$1, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, value, map, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { createMissingIdentifier, Assay_tryIdentifierFromFileName, removeMissingIdentifier, Assay_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { JsonTypes_decomposeTechnologyPlatform, JsonTypes_composeTechnologyPlatform } from '../../Core/Conversion.js';
 import { ArcAssay } from '../../Core/ArcTypes.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -28,7 +28,7 @@ function fromString(identifier, title, description, measurementType, measurement
   }
   const measurementType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), measurementType_1);
   const technologyType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), technologyType_1);
-  const technologyPlatform_1 = map$1(JsonTypes_decomposeTechnologyPlatform, technologyPlatform);
+  const technologyPlatform_1 = map(JsonTypes_decomposeTechnologyPlatform, technologyPlatform);
   return ArcAssay.make(identifier_4, title, description, measurementType_2, technologyType_2, technologyPlatform_1, [], void 0, [], comments);
 }
 function fromSparseTable(matrix) {
@@ -38,7 +38,7 @@ function fromSparseTable(matrix) {
   } else {
     return initialize(matrix.ColumnCount, (i) => {
       let comments_1;
-      const collection = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
+      const collection = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
       comments_1 = Array.from(collection);
       return fromString(SparseTable__TryGetValue_11FD62A8(matrix, ["Identifier", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Title", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Description", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type Term Source REF", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type Term Accession Number", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type Term Source REF", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type Term Accession Number", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Platform", i]), SparseTable__TryGetValue_11FD62A8(matrix, ["File Name", i]), comments_1);
     });
@@ -65,7 +65,7 @@ function toSparseTable(assays) {
     addToDict(matrix.Matrix, ["Technology Type", i_1], tt_1.TermName);
     addToDict(matrix.Matrix, ["Technology Type Term Accession Number", i_1], tt_1.TermAccessionNumber);
     addToDict(matrix.Matrix, ["Technology Type Term Source REF", i_1], tt_1.TermSourceREF);
-    addToDict(matrix.Matrix, ["Technology Platform", i_1], defaultArg(map$1(JsonTypes_composeTechnologyPlatform, a.TechnologyPlatform), ""));
+    addToDict(matrix.Matrix, ["Technology Platform", i_1], defaultArg(map(JsonTypes_composeTechnologyPlatform, a.TechnologyPlatform), ""));
     addToDict(matrix.Matrix, ["File Name", i_1], processedFileName);
     ResizeArray_iter((comment) => {
       const patternInput = Comment_toString(comment);

package/dist/ts/ts/Spreadsheet/Metadata/Comment.js

@@ -1,5 +1,5 @@
 import { ActivePatterns_$007CRegex$007C_$007C } from '../../Core/Helper/Regex.js';
-import { value, bind, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { value, defaultArg, bind } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { toText, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
 import { Option_fromValueWithDefault } from './Conversions.js';
 import { Comment$ } from '../../Core/Comment.js';

package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js

@@ -2,8 +2,8 @@ import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, con
 import { Person_setOrcidFromComments, Person_setCommentFromORCID } from '../../Core/Conversion.js';
 import { OntologyAnnotation_fromAggregatedStrings, OntologyAnnotation_toAggregatedStrings } from './Conversions.js';
 import { Person } from '../../Core/Person.js';
-import { unwrap, value, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { defaultArg, unwrap, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { ResizeArray_iter } from '../../Core/Helper/Collections.js';

package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js

@@ -1,6 +1,6 @@
 import { equals } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
-import { some, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { map3, fill, fold, equalsWith } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
+import { some, value, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { fold, map3, fill, equalsWith } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
 import { toFail, printf, toText } from '../../../node_modules/@fable-org/fable-library-js/String.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Component_fromISAString_7C9A7CF8, Component_toStringObject_Z685B8F25 } from '../../Core/Process/Component.js';
@@ -16,6 +16,9 @@ function Option_fromValueWithDefault(d, v) {
     return some(v);
   }
 }
+function Option_mapDefault(d, f, o) {
+  return Option_fromValueWithDefault(d, o == null ? f(d) : f(value(o)));
+}
 function OntologyAnnotation_getLengthOfAggregatedStrings(separator, strings) {
   return fold((l, s) => {
     if (s === "") {
@@ -130,4 +133,4 @@ function ProtocolParameter_toAggregatedStrings(separator, oas) {
   }
 }
 
-export { Component_fromAggregatedStrings, Component_toAggregatedStrings, OntologyAnnotation_fromAggregatedStrings, OntologyAnnotation_getLengthOfAggregatedStrings, OntologyAnnotation_toAggregatedStrings, Option_fromValueWithDefault, ProtocolParameter_fromAggregatedStrings, ProtocolParameter_toAggregatedStrings };
+export { Component_fromAggregatedStrings, Component_toAggregatedStrings, OntologyAnnotation_fromAggregatedStrings, OntologyAnnotation_getLengthOfAggregatedStrings, OntologyAnnotation_toAggregatedStrings, Option_fromValueWithDefault, Option_mapDefault, ProtocolParameter_fromAggregatedStrings, ProtocolParameter_toAggregatedStrings };

package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js

@@ -1,10 +1,16 @@
 import { ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
-import { fromRows as fromRows$1, toRows as toRows$1 } from './OntologyAnnotation.js';
+import { fromSparseTable as fromSparseTable$1, toSparseTable as toSparseTable$1, fromRows as fromRows$1, toRows as toRows$1 } from './OntologyAnnotation.js';
 
 const designTypeLabel = "Type";
 const designTypeTermAccessionNumberLabel = "Type Term Accession Number";
 const designTypeTermSourceREFLabel = "Type Term Source REF";
-ofArray([designTypeLabel, designTypeTermAccessionNumberLabel, designTypeTermSourceREFLabel]);
+const labels = ofArray([designTypeLabel, designTypeTermAccessionNumberLabel, designTypeTermSourceREFLabel]);
+function fromSparseTable(matrix) {
+  return fromSparseTable$1(designTypeLabel, designTypeTermSourceREFLabel, designTypeTermAccessionNumberLabel, matrix);
+}
+function toSparseTable(designs) {
+  return toSparseTable$1(designTypeLabel, designTypeTermSourceREFLabel, designTypeTermAccessionNumberLabel, designs);
+}
 function fromRows(prefix, lineNumber, rows) {
   return fromRows$1(prefix, designTypeLabel, designTypeTermSourceREFLabel, designTypeTermAccessionNumberLabel, lineNumber, rows);
 }
@@ -12,4 +18,4 @@ function toRows(prefix, designs) {
   return toRows$1(prefix, designTypeLabel, designTypeTermSourceREFLabel, designTypeTermAccessionNumberLabel, designs);
 }
 
-export { designTypeLabel, designTypeTermAccessionNumberLabel, designTypeTermSourceREFLabel, fromRows, toRows };
+export { designTypeLabel, designTypeTermAccessionNumberLabel, designTypeTermSourceREFLabel, fromRows, fromSparseTable, labels, toRows, toSparseTable };

package/dist/ts/ts/Spreadsheet/Metadata/Factors.js

@@ -1,9 +1,9 @@
 import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
-import { value, unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { Factor } from '../../Core/Process/Factor.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -61,12 +61,14 @@ function toSparseTable(factors) {
   })), matrix.ColumnCount);
 }
 function fromRows(prefix, lineNumber, rows) {
-  const tupledArg = SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
+  const tupledArg = prefix == null ? SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber) : SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
   return [tupledArg[0], tupledArg[1], tupledArg[2], fromSparseTable(tupledArg[3])];
 }
 function toRows(prefix, factors) {
   const m = toSparseTable(factors);
-  {
+  if (prefix == null) {
+    return SparseTable_ToRows_759CAFC1(m);
+  } else {
     return SparseTable_ToRows_759CAFC1(m, value(prefix));
   }
 }

package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js

@@ -1,8 +1,8 @@
-import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { length, singleton, initialize, map, ofArray, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
-import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -45,12 +45,14 @@ function toSparseTable(label, labelTSR, labelTAN, designs) {
 }
 function fromRows(prefix, label, labelTSR, labelTAN, lineNumber, rows) {
   const labels = ofArray([label, labelTAN, labelTSR]);
-  const tupledArg = SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
+  const tupledArg = prefix == null ? SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber) : SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
   return [tupledArg[0], tupledArg[1], tupledArg[2], fromSparseTable(label, labelTSR, labelTAN, tupledArg[3])];
 }
 function toRows(prefix, label, labelTSR, labelTAN, designs) {
   const m = toSparseTable(label, labelTSR, labelTAN, designs);
-  {
+  if (prefix == null) {
+    return SparseTable_ToRows_759CAFC1(m);
+  } else {
     return SparseTable_ToRows_759CAFC1(m, value(prefix));
   }
 }

package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js

@@ -1,7 +1,7 @@
 import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { OntologySourceReference } from '../../Core/OntologySourceReference.js';
 import { defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { ResizeArray_iter } from '../../Core/Helper/Collections.js';

package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js

@@ -1,10 +1,10 @@
-import { ofArray, length, singleton, ofSeq, initialize, map, empty, iterateIndexed, iterate, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofArray, ofSeq, empty, length, singleton, initialize, map as map$1, iterateIndexed, iterate, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
-import { value, unwrap, map as map$1, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, map, defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { ProtocolParameter_fromAggregatedStrings, Component_fromAggregatedStrings, Option_fromValueWithDefault, ProtocolParameter_toAggregatedStrings, Component_toAggregatedStrings } from './Conversions.js';
-import { Protocol_create_Z414665E7, Protocol_make } from '../../Core/Process/Protocol.js';
+import { Protocol_make, Protocol_create_Z414665E7 } from '../../Core/Process/Protocol.js';
 import { URIModule_fromString } from '../../Core/URI.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -29,14 +29,14 @@ function fromString(name, protocolType, typeTermAccessionNumber, typeTermSourceR
   const protocolType_1 = OntologyAnnotation.create(unwrap(protocolType), unwrap(typeTermSourceREF), unwrap(typeTermAccessionNumber));
   const parameters = ofSeq(ProtocolParameter_fromAggregatedStrings(";", parametersName, parametersTermSourceREF, parametersTermAccessionNumber));
   const components = Component_fromAggregatedStrings(";", componentsName, componentsType, componentsTypeTermSourceREF, componentsTypeTermAccessionNumber);
-  return Protocol_make(void 0, map$1(URIModule_fromString, name), Option_fromValueWithDefault(new OntologyAnnotation(), protocolType_1), description, map$1(URIModule_fromString, uri), version, Option_fromValueWithDefault(empty(), parameters), Option_fromValueWithDefault(empty(), components), Option_fromValueWithDefault(empty(), comments));
+  return Protocol_make(void 0, map(URIModule_fromString, name), Option_fromValueWithDefault(new OntologyAnnotation(), protocolType_1), description, map(URIModule_fromString, uri), version, Option_fromValueWithDefault(empty(), parameters), Option_fromValueWithDefault(empty(), components), Option_fromValueWithDefault(empty(), comments));
 }
 function fromSparseTable(matrix) {
   if (matrix.ColumnCount === 0 && length(matrix.CommentKeys) !== 0) {
     return singleton(Protocol_create_Z414665E7(void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, ofSeq(SparseTable_GetEmptyComments_3ECCA699(matrix))));
   } else {
     return initialize(matrix.ColumnCount, (i) => {
-      const comments_1 = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
+      const comments_1 = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
       return fromString(SparseTable__TryGetValue_11FD62A8(matrix, [nameLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [protocolTypeLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermAccessionNumberLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [typeTermSourceREFLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [descriptionLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [uriLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [versionLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersNameLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermAccessionNumberLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [parametersTermSourceREFLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsNameLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermAccessionNumberLabel, i]), SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [componentsTypeTermSourceREFLabel, i]), comments_1);
     });
   }
@@ -81,12 +81,14 @@ function toSparseTable(protocols) {
   })), matrix.ColumnCount);
 }
 function fromRows(prefix, lineNumber, rows) {
-  const tupledArg = SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
+  const tupledArg = prefix == null ? SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber) : SparseTable_FromRows_Z5579EC29(rows, labels, lineNumber, value(prefix));
   return [tupledArg[0], tupledArg[1], tupledArg[2], fromSparseTable(tupledArg[3])];
 }
 function toRows(prefix, protocols) {
   const m = toSparseTable(protocols);
-  {
+  if (prefix == null) {
+    return SparseTable_ToRows_759CAFC1(m);
+  } else {
     return SparseTable_ToRows_759CAFC1(m, value(prefix));
   }
 }

package/dist/ts/ts/Spreadsheet/Metadata/Publication.js

@@ -1,10 +1,10 @@
-import { ofArray, length, singleton, initialize, map, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { ofArray, length, singleton, initialize, map as map$1, empty, iterateIndexed, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
-import { value, unwrap, map as map$1, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { unwrap, map, defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { URIModule_fromString } from '../../Core/URI.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { Publication } from '../../Core/Publication.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable_GetEmptyComments_3ECCA699, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -20,7 +20,7 @@ const statusTermSourceREFLabel = "Status Term Source REF";
 const labels = ofArray([pubMedIDLabel, doiLabel, authorListLabel, titleLabel, statusLabel, statusTermAccessionNumberLabel, statusTermSourceREFLabel]);
 function fromString(pubMedID, doi, author, title, status, statusTermSourceREF, statusTermAccessionNumber, comments) {
   const status_1 = new OntologyAnnotation(unwrap(status), unwrap(statusTermSourceREF), unwrap(statusTermAccessionNumber));
-  const pubMedID_1 = map$1(URIModule_fromString, pubMedID);
+  const pubMedID_1 = map(URIModule_fromString, pubMedID);
   const status_2 = Option_fromValueWithDefault(new OntologyAnnotation(), status_1);
   return Publication.make(pubMedID_1, doi, author, title, status_2, comments);
 }
@@ -32,7 +32,7 @@ function fromSparseTable(matrix) {
   } else {
     return initialize(matrix.ColumnCount, (i) => {
       let comments_1;
-      const collection = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
+      const collection = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, i])), matrix.CommentKeys);
       comments_1 = Array.from(collection);
       return fromString(SparseTable__TryGetValue_11FD62A8(matrix, [pubMedIDLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [doiLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [authorListLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [titleLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [statusLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [statusTermSourceREFLabel, i]), SparseTable__TryGetValue_11FD62A8(matrix, [statusTermAccessionNumberLabel, i]), comments_1);
     });

package/dist/ts/ts/Spreadsheet/Metadata/Run.js

@@ -1,12 +1,12 @@
-import { ofArray, map, empty, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
-import { value, unwrap, map as map$1, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ofArray, map as map$1, empty, cons, reverse } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { value, unwrap, map, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { createMissingIdentifier, Assay_tryIdentifierFromFileName, Run_fileNameFromIdentifier } from '../../Core/Helper/Identifier.js';
 import { Option_fromValueWithDefault, ResizeArray_iter } from '../../Core/Helper/Collections.js';
 import { JsonTypes_decomposeTechnologyPlatform, JsonTypes_composeTechnologyPlatform } from '../../Core/Conversion.js';
 import { ArcRun } from '../../Core/ArcTypes.js';
 import { Comment_fromString, Comment_toString } from './Comment.js';
-import { SparseTable_FromRows_Z5579EC29, SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_ToRows_759CAFC1, SparseTable_Create_Z2192E64B, SparseTable } from './SparseTable.js';
+import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable__TryGetValue_11FD62A8, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1 } from './SparseTable.js';
 import { join } from '../../../node_modules/@fable-org/fable-library-js/String.js';
 import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
 import { List_distinct } from '../../../node_modules/@fable-org/fable-library-js/Seq2.js';
@@ -37,12 +37,12 @@ function fromString(identifier, title, description, workflowIdentifiers, measure
   }
   const measurementType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), measurementType_1);
   const technologyType_2 = Option_fromValueWithDefault(new OntologyAnnotation(), technologyType_1);
-  const technologyPlatform_1 = map$1(JsonTypes_decomposeTechnologyPlatform, technologyPlatform);
+  const technologyPlatform_1 = map(JsonTypes_decomposeTechnologyPlatform, technologyPlatform);
   return ArcRun.make(identifier_4, title, description, measurementType_2, technologyType_2, technologyPlatform_1, workflowIdentifiers_1, [], void 0, [], comments);
 }
 function fromSparseTable(matrix) {
   let comments;
-  const collection = map((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
+  const collection = map$1((k) => Comment_fromString(k, SparseTable__TryGetValueDefault_5BAE6133(matrix, "", [k, 0])), matrix.CommentKeys);
   comments = Array.from(collection);
   return fromString(SparseTable__TryGetValue_11FD62A8(matrix, ["Identifier", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Title", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Description", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Workflow Identifiers", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type Term Source REF", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Measurement Type Term Accession Number", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type Term Source REF", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Type Term Accession Number", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["Technology Platform", 0]), SparseTable__TryGetValue_11FD62A8(matrix, ["File Name", 0]), comments);
 }
@@ -67,7 +67,7 @@ function toSparseTable(run) {
   addToDict(matrix.Matrix, ["Technology Type", 1], tt_1.TermName);
   addToDict(matrix.Matrix, ["Technology Type Term Accession Number", 1], tt_1.TermAccessionNumber);
   addToDict(matrix.Matrix, ["Technology Type Term Source REF", 1], tt_1.TermSourceREF);
-  addToDict(matrix.Matrix, ["Technology Platform", 1], defaultArg(map$1(JsonTypes_composeTechnologyPlatform, run.TechnologyPlatform), ""));
+  addToDict(matrix.Matrix, ["Technology Platform", 1], defaultArg(map(JsonTypes_composeTechnologyPlatform, run.TechnologyPlatform), ""));
   addToDict(matrix.Matrix, ["File Name", 1], patternInput[1]);
   ResizeArray_iter((comment) => {
     const patternInput_1 = Comment_toString(comment);