@nfdi4plants/arctrl 3.0.0-beta.5 → 3.0.0-beta.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +894 -4
- package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +121 -3
- package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +279 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +101 -2
- package/dist/ts/node_modules/@fable-org/fable-library-js/Choice.js +187 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +156 -2
- package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +183 -7
- package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +217 -5
- package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +154 -5
- package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +20 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Collections.js +30 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +68 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +6 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +98 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +18 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +601 -5
- package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +10 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +760 -16
- package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +26 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +18 -8
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +36 -4
- package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +35 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +26 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +355 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +21 -2
- package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +133 -1
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +543 -8
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +53 -4
- package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +673 -41
- package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +197 -4
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +128 -3
- package/dist/ts/node_modules/@fable-org/fable-library-js/SystemException.js +8 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/TimeSpan.js +180 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +20 -2
- package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +406 -2
- package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +2 -2
- package/dist/ts/ts/ARC.d.ts +12 -5
- package/dist/ts/ts/ARC.d.ts.map +1 -1
- package/dist/ts/ts/ARC.js +172 -93
- package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
- package/dist/ts/ts/Contract/ARC.js +8 -1
- package/dist/ts/ts/Contract/ArcAssay.js +14 -5
- package/dist/ts/ts/Contract/ArcInvestigation.js +10 -1
- package/dist/ts/ts/Contract/ArcRun.js +19 -6
- package/dist/ts/ts/Contract/ArcStudy.js +19 -6
- package/dist/ts/ts/Contract/ArcWorkflow.js +19 -6
- package/dist/ts/ts/Contract/Contract.js +42 -1
- package/dist/ts/ts/Contract/Datamap.js +61 -17
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
- package/dist/ts/ts/Contract/Git.js +22 -6
- package/dist/ts/ts/Contract/License.d.ts +5 -0
- package/dist/ts/ts/Contract/License.d.ts.map +1 -0
- package/dist/ts/ts/Contract/License.js +34 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +31 -6
- package/dist/ts/ts/ContractIO/ContractIO.js +5 -5
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +16 -4
- package/dist/ts/ts/Conversion.js +321 -48
- package/dist/ts/ts/Core/ArcTypes.js +216 -15
- package/dist/ts/ts/Core/Comment.js +11 -1
- package/dist/ts/ts/Core/CommentList.js +77 -2
- package/dist/ts/ts/Core/Conversion.js +123 -43
- package/dist/ts/ts/Core/Data.js +9 -2
- package/dist/ts/ts/Core/DataContext.js +19 -4
- package/dist/ts/ts/Core/DataFile.js +38 -1
- package/dist/ts/ts/Core/DataMap.js +111 -5
- package/dist/ts/ts/Core/Helper/Collections.js +106 -5
- package/dist/ts/ts/Core/Helper/HashCodes.js +4 -4
- package/dist/ts/ts/Core/Helper/Identifier.js +100 -2
- package/dist/ts/ts/Core/Helper/Regex.js +134 -2
- package/dist/ts/ts/Core/Helper/SemVer.js +23 -2
- package/dist/ts/ts/Core/IdentifierSetters.js +27 -3
- package/dist/ts/ts/Core/OntologyAnnotation.js +4 -1
- package/dist/ts/ts/Core/OntologySourceReference.js +8 -1
- package/dist/ts/ts/Core/Person.js +8 -1
- package/dist/ts/ts/Core/Process/ColumnIndex.js +121 -4
- package/dist/ts/ts/Core/Process/Component.js +37 -4
- package/dist/ts/ts/Core/Process/Factor.js +9 -4
- package/dist/ts/ts/Core/Process/FactorValue.js +61 -4
- package/dist/ts/ts/Core/Process/Material.js +14 -4
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +41 -3
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +67 -4
- package/dist/ts/ts/Core/Process/MaterialType.js +15 -1
- package/dist/ts/ts/Core/Process/Process.js +150 -7
- package/dist/ts/ts/Core/Process/ProcessInput.js +48 -8
- package/dist/ts/ts/Core/Process/ProcessOutput.js +44 -7
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +10 -5
- package/dist/ts/ts/Core/Process/ProcessSequence.js +127 -6
- package/dist/ts/ts/Core/Process/Protocol.js +78 -4
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -2
- package/dist/ts/ts/Core/Process/Sample.js +21 -3
- package/dist/ts/ts/Core/Process/Source.js +13 -3
- package/dist/ts/ts/Core/Publication.js +8 -1
- package/dist/ts/ts/Core/Table/ArcTable.js +34 -25
- package/dist/ts/ts/Core/Table/ArcTableAux.js +150 -23
- package/dist/ts/ts/Core/Table/ArcTables.js +24 -15
- package/dist/ts/ts/Core/Table/CompositeCell.js +7 -3
- package/dist/ts/ts/Core/Table/CompositeColumn.js +8 -4
- package/dist/ts/ts/Core/Table/CompositeHeader.js +18 -15
- package/dist/ts/ts/Core/Template.js +12 -2
- package/dist/ts/ts/Core/Templates.js +8 -4
- package/dist/ts/ts/Core/Value.js +7 -3
- package/dist/ts/ts/CrossAsync.js +11 -1
- package/dist/ts/ts/FileSystem/Commit.js +18 -0
- package/dist/ts/ts/FileSystem/FileSystem.js +8 -3
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +1 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
- package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -13
- package/dist/ts/ts/FileSystem/Path.d.ts +2 -0
- package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
- package/dist/ts/ts/FileSystem/Path.js +17 -3
- package/dist/ts/ts/Json/Assay.js +26 -26
- package/dist/ts/ts/Json/Comment.js +10 -10
- package/dist/ts/ts/Json/Data.js +6 -6
- package/dist/ts/ts/Json/DataMap/DataContext.js +4 -4
- package/dist/ts/ts/Json/DataMap/DataMap.js +2 -2
- package/dist/ts/ts/Json/Decode.js +14 -9
- package/dist/ts/ts/Json/Encode.js +43 -11
- package/dist/ts/ts/Json/Investigation.js +40 -22
- package/dist/ts/ts/Json/OntologyAnnotation.js +5 -5
- package/dist/ts/ts/Json/OntologySourceReference.js +2 -2
- package/dist/ts/ts/Json/Person.js +26 -26
- package/dist/ts/ts/Json/Process/Component.js +9 -6
- package/dist/ts/ts/Json/Process/Factor.js +3 -3
- package/dist/ts/ts/Json/Process/FactorValue.js +8 -8
- package/dist/ts/ts/Json/Process/Material.js +9 -9
- package/dist/ts/ts/Json/Process/MaterialAttribute.js +1 -1
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +8 -8
- package/dist/ts/ts/Json/Process/Process.js +12 -12
- package/dist/ts/ts/Json/Process/ProcessInput.js +4 -4
- package/dist/ts/ts/Json/Process/ProcessOutput.js +3 -3
- package/dist/ts/ts/Json/Process/ProcessParameterValue.js +10 -7
- package/dist/ts/ts/Json/Process/Protocol.js +12 -12
- package/dist/ts/ts/Json/Process/ProtocolParameter.js +3 -3
- package/dist/ts/ts/Json/Process/Sample.js +14 -14
- package/dist/ts/ts/Json/Process/Source.js +9 -9
- package/dist/ts/ts/Json/Process/Value.js +1 -1
- package/dist/ts/ts/Json/PropertyValue.js +1 -1
- package/dist/ts/ts/Json/Publication.js +6 -6
- package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -0
- package/dist/ts/ts/Json/ROCrate/LDGraph.js +3 -3
- package/dist/ts/ts/Json/ROCrate/LDNode.js +19 -19
- package/dist/ts/ts/Json/Run.js +7 -7
- package/dist/ts/ts/Json/StringTable.js +1 -1
- package/dist/ts/ts/Json/Study.js +32 -32
- package/dist/ts/ts/Json/Table/ArcTable.js +29 -29
- package/dist/ts/ts/Json/Table/CellTable.js +6 -6
- package/dist/ts/ts/Json/Table/CompositeCell.js +4 -4
- package/dist/ts/ts/Json/Table/CompositeHeader.js +2 -2
- package/dist/ts/ts/Json/Table/IOType.js +1 -1
- package/dist/ts/ts/Json/Table/OATable.js +7 -7
- package/dist/ts/ts/Json/Table/Templates.js +92 -6
- package/dist/ts/ts/Json/Workflow.js +11 -11
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +27 -1
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +17 -1
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +19 -1
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +27 -1
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +20 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +18 -1
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +20 -1
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +16 -1
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +25 -1
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +24 -1
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +23 -1
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +20 -1
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +19 -1
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +19 -1
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +35 -1
- package/dist/ts/ts/Json/context/rocrate/rocrate_context.js +61 -0
- package/dist/ts/ts/Json.d.ts +13 -1
- package/dist/ts/ts/Json.d.ts.map +1 -1
- package/dist/ts/ts/Json.js +89 -2
- package/dist/ts/ts/JsonIO/Assay.js +15 -3
- package/dist/ts/ts/JsonIO/Investigation.js +15 -3
- package/dist/ts/ts/JsonIO/LDObject.js +17 -3
- package/dist/ts/ts/JsonIO/OntologyAnnotation.js +12 -2
- package/dist/ts/ts/JsonIO/Person.d.ts +16 -0
- package/dist/ts/ts/JsonIO/Person.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Person.js +67 -0
- package/dist/ts/ts/JsonIO/Run.js +9 -3
- package/dist/ts/ts/JsonIO/Study.js +15 -3
- package/dist/ts/ts/JsonIO/Table/Compression.js +3 -3
- package/dist/ts/ts/JsonIO/Table/Templates.js +60 -5
- package/dist/ts/ts/JsonIO/Workflow.js +9 -3
- package/dist/ts/ts/License.d.ts +39 -0
- package/dist/ts/ts/License.d.ts.map +1 -0
- package/dist/ts/ts/License.js +123 -0
- package/dist/ts/ts/ROCrate/Generic/Comment.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts +69 -0
- package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/CreativeWork.js +450 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +1 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +1 -1
- package/dist/ts/ts/ROCrate/Generic/Dataset.js +27 -1
- package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/File.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/LabProcess.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/Organization.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/Person.js +7 -2
- package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +19 -15
- package/dist/ts/ts/ROCrate/Generic/Sample.js +5 -1
- package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +5 -1
- package/dist/ts/ts/ROCrate/LDContext.js +15 -6
- package/dist/ts/ts/ROCrate/LDObject.js +53 -17
- package/dist/ts/ts/ROCrateIO.d.ts +9 -3
- package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
- package/dist/ts/ts/ROCrateIO.js +67 -14
- package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +18 -15
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +5 -4
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +40 -17
- package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +4 -4
- package/dist/ts/ts/Spreadsheet/ArcAssay.js +30 -15
- package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +32 -18
- package/dist/ts/ts/Spreadsheet/ArcRun.js +23 -8
- package/dist/ts/ts/Spreadsheet/ArcStudy.js +22 -7
- package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +23 -8
- package/dist/ts/ts/Spreadsheet/CollectionAux.js +75 -5
- package/dist/ts/ts/Spreadsheet/DataMap.js +1 -1
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +4 -4
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +8 -8
- package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +4 -4
- package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +6 -6
- package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +2 -2
- package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +6 -3
- package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +9 -3
- package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +6 -4
- package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +7 -5
- package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +1 -1
- package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +10 -8
- package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +5 -5
- package/dist/ts/ts/Spreadsheet/Metadata/Run.js +6 -6
- package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +246 -10
- package/dist/ts/ts/Spreadsheet/Metadata/Study.js +19 -13
- package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +5 -5
- package/dist/ts/ts/Template.Web.js +5 -1
- package/dist/ts/ts/ValidationPackages/ValidationPackage.js +8 -1
- package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +10 -3
- package/dist/ts/ts/WebRequest/WebRequest.Node.js +1 -0
- package/dist/ts/ts/Xlsx.js +41 -1
- package/dist/ts/ts/Yaml/ValidationPackage.js +18 -2
- package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -2
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +27 -4
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +14 -3
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +30 -4
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +5 -1
- package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +65 -2
- package/dist/ts/ts/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +257 -1
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/Promise.fs.js +71 -1
- package/dist/ts/ts/fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js +11 -1
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +188 -11
- package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +80 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +63 -4
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCellsCollection.fs.js +17 -7
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/CellBuilder.fs.js +198 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Expression.fs.js +46 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/RowBuilder.fs.js +131 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/DSL/Types.fs.js +307 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsAddress.fs.js +38 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsColumn.fs.js +11 -4
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsRow.fs.js +12 -5
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +9 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js +14 -7
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +31 -1
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Cell.fs.js +65 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Column.fs.js +38 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Row.fs.js +38 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Table.fs.js +34 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +49 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Workbook.fs.js +44 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Worksheet.fs.js +129 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRange.fs.js +9 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeAddress.fs.js +82 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeBase.fs.js +12 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeColumn.fs.js +17 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Ranges/FsRangeRow.fs.js +9 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +12 -5
- package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +12 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +2 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +42 -3
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Json.fs.js +53 -0
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +9 -9
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +1 -1
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +2 -2
- package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +5 -1
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +730 -23
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +192 -7
- package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +45 -1
- package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +15 -2
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +1383 -15
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +45 -4
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.js +10 -0
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +5 -5
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +16 -6
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +26 -23
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +1 -1
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +8 -8
- package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +18 -2
- package/package.json +1 -1
- package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts +0 -2
- package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +0 -1
- package/dist/ts/ts/FileSystem/DefaultGitattributes.js +0 -3
- package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts +0 -2
- package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +0 -1
- package/dist/ts/ts/FileSystem/DefaultGitignore.js +0 -3
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import {
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import { map, unwrap, bind, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
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import { item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
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import { CompositeCell } from '../../Core/Table/CompositeCell.js';
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function toStringCells(isTerm, hasUnit, cell) {
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} else if (cell.fields[0], isTerm) {
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import {
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import { skip, item, setItem, map, tryItem } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
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import { IOType, CompositeHeader_Output, CompositeHeader_Input, IOType_Source } from '../../Core/Table/CompositeHeader.js';
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import { toString, FSharpRef } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
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import {
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import {
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import { fromStringCells, toStringCells } from './CompositeHeader.js';
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import { toArray, delay, map as map$1, exists, toList, append, singleton, reduce } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { rangeDouble } from '../../../node_modules/@fable-org/fable-library-js/Range.js';
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import {
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import '../../
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import { defaultOf, stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
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import { ofArray, singleton } from '../../../node_modules/@fable-org/fable-library-js/List.js';
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import { tryGetValue, getItemFromDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
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import { mergeHashes } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js';
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import { CompositeColumn } from '../../Core/Table/CompositeColumn.js';
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import { FsCell } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js';
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import { toStringCells as toStringCells$1 } from './CompositeCell.js';
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import { defaultArg, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
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import { ofArray, singleton as singleton$1, map as map$2 } from '../../../node_modules/@fable-org/fable-library-js/List.js';
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import { stringHash, defaultOf } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
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import { ColumnValueRefs_Sparse, ensureCellHashInValueMap, ColumnValueRefs_Constant } from '../../Core/Table/ArcTableAux.js';
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import { mergeHashes } from '../../fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js';
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import { tryGetValue, getItemFromDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
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function fixDeprecatedIOHeader(stringCellCol) {
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throw new Error("Can't fix IOHeader Invalid column, neither header nor values given");
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skip(1, stringCellCol);
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const values = skip(1, stringCellCol);
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const matchValue = IOType.ofString(item(0, stringCellCol));
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switch (matchValue.tag) {
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case /* FreeText */
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@@ -34,6 +35,24 @@ function fixDeprecatedIOHeader(stringCellCol) {
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}
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}
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}
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function fromStringCellColumns(columns) {
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const patternInput = fromStringCells(map((c) => item(0, c), columns));
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const l = item(0, columns).length | 0;
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const cells = Array.from(toArray(delay(() => map$1((i) => patternInput[1](map((c_1) => item(i, c_1), columns)), rangeDouble(1, 1, l - 1)))));
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return CompositeColumn.create(patternInput[0], cells);
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}
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function stringCellColumnsOfFsColumns(columns) {
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return map((c) => {
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c.ToDenseColumn();
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return map((cell) => cell.ValueAsString(), toArray(c.Cells));
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}, columns);
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}
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function fromFsColumns(columns) {
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return fromStringCellColumns(map((c) => {
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c.ToDenseColumn();
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return map((c_1) => c_1.ValueAsString(), toArray(c.Cells));
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}, columns));
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}
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function toStringCellColumns(column) {
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const hasUnit = exists((c) => c.isUnitized, column.Cells);
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const isTerm = column.Header.IsTermColumn;
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@@ -43,16 +62,20 @@ function toStringCellColumns(column) {
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const cells = map((cell) => toStringCells$1(isTerm, hasUnit, cell), toArray(column.Cells));
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const getCellOrDefault = (ri, ci, cells_1) => defaultArg(tryItem(ci, item(ri, cells_1)), "");
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if (hasUnit) {
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return ofArray([toList(delay(() => append(singleton
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return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i) => getCellOrDefault(i, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_1) => getCellOrDefault(i_1, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_2) => getCellOrDefault(i_2, 2, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(3, header)), delay(() => map$1((i_3) => getCellOrDefault(i_3, 3, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
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} else if (isTerm) {
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-
return ofArray([toList(delay(() => append(singleton
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return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_4) => getCellOrDefault(i_4, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_5) => getCellOrDefault(i_5, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_6) => getCellOrDefault(i_6, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
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68
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} else if (isData) {
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return ofArray([toList(delay(() => append(singleton
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+
return ofArray([toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_7) => getCellOrDefault(i_7, 0, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(1, header)), delay(() => map$1((i_8) => getCellOrDefault(i_8, 1, cells), rangeDouble(0, 1, compositeCells.length - 1)))))), toList(delay(() => append(singleton(item(2, header)), delay(() => map$1((i_9) => getCellOrDefault(i_9, 2, cells), rangeDouble(0, 1, compositeCells.length - 1))))))]);
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} else {
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52
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-
return singleton(toList(delay(() => append(singleton
|
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+
return singleton$1(toList(delay(() => append(singleton(item(0, header)), delay(() => map$1((i_10) => item(0, item(i_10, cells)), rangeDouble(0, 1, compositeCells.length - 1)))))));
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72
|
}
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}
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+
function toFsColumns(column) {
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75
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return map$2((c) => map$2((s) => new FsCell(s), c), toStringCellColumns(column));
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+
}
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55
77
|
function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
|
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78
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+
let cellHash;
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56
79
|
const hashMap = /* @__PURE__ */ new Map([]);
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57
80
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const cells = /* @__PURE__ */ new Map([]);
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58
81
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let constant = true;
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@@ -90,8 +113,8 @@ function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
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90
113
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hashMap.set(hash_2, cellHash_5);
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91
114
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cells.set(i - 1, cellHash_5);
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92
115
|
}
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93
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-
} else if (value(matchValue) | 0, constant) {
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94
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-
value(matchValue) | 0;
|
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116
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+
} else if (cellHash = value(matchValue) | 0, constant) {
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117
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+
const cellHash_1 = value(matchValue) | 0;
|
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95
118
|
} else {
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96
119
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const cellHash_2 = value(matchValue) | 0;
|
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97
120
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cells.set(i - 1, cellHash_2);
|
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@@ -105,4 +128,4 @@ function ColumnValueRefs_fromStringCellColumns(valueMap, columns) {
|
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105
128
|
}
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106
129
|
}
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107
130
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108
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-
export { ColumnValueRefs_fromStringCellColumns, fixDeprecatedIOHeader, toStringCellColumns };
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131
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+
export { ColumnValueRefs_fromStringCellColumns, fixDeprecatedIOHeader, fromFsColumns, fromStringCellColumns, stringCellColumnsOfFsColumns, toFsColumns, toStringCellColumns };
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@@ -1,11 +1,11 @@
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1
1
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import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
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2
2
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import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
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3
3
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import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
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4
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import {
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5
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import {
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6
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-
import { item, skip, tryFindIndex
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4
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+
import { unitizedFromStringCells, termFromStringCells, dataFromStringCells, freeTextFromStringCells } from './CompositeCell.js';
|
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5
|
+
import { CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Component, IOType, CompositeHeader_Input, IOType_Data, CompositeHeader_Output, CompositeHeader_Comment, CompositeHeader_ProtocolType, CompositeHeader_Date, CompositeHeader_Performer, CompositeHeader_ProtocolVersion, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolREF, CompositeHeader_FreeText } from '../../Core/Table/CompositeHeader.js';
|
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6
|
+
import { equalsWith, item, skip, tryFindIndex } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
|
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7
7
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import { defaultOf } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
|
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8
|
-
import { ActivePatterns_$
|
|
8
|
+
import { ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, tryParseParameterColumnHeader, tryParseFactorColumnHeader, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader, ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C } from '../../Core/Helper/Regex.js';
|
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9
9
|
import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
|
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10
10
|
import { toArray, delay, append, singleton, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
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11
11
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|
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@@ -1,17 +1,17 @@
|
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1
|
-
import {
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|
2
|
-
import { defaultArg, toArray,
|
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1
|
+
import { exists, head, tryHead, delay, append, singleton, iterateIndexed, map, tryFind, choose, tryPick, isEmpty as isEmpty$1, iterate } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
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2
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+
import { value, defaultArg, toArray, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
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3
3
|
import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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4
4
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import { fromRows as fromRows$1, toRows } from './Metadata/Assays.js';
|
|
5
|
-
import { empty,
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5
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+
import { isEmpty, empty, singleton as singleton$1, ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
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6
6
|
import { ArcAssay } from '../Core/ArcTypes.js';
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7
7
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import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
|
|
8
8
|
import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
|
|
9
|
-
import {
|
|
9
|
+
import { SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
|
|
10
10
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import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
|
|
11
|
-
import {
|
|
11
|
+
import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
12
12
|
import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
|
|
13
|
-
import { toFsWorksheet as toFsWorksheet$1
|
|
14
|
-
import {
|
|
13
|
+
import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
|
|
14
|
+
import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
|
|
15
15
|
|
|
16
16
|
function ArcAssay_fromRows(rows) {
|
|
17
17
|
const patternInput = exists((row) => {
|
|
@@ -24,14 +24,14 @@ function ArcAssay_fromRows(rows) {
|
|
|
24
24
|
loop:
|
|
25
25
|
while (true) {
|
|
26
26
|
const lastRow = lastRow_mut, assays = assays_mut, contacts = contacts_mut, rowNumber = rowNumber_mut;
|
|
27
|
-
let matchResult;
|
|
27
|
+
let matchResult, prefix_2, prefix_3;
|
|
28
28
|
if (lastRow != null) {
|
|
29
29
|
if (prefix = value(lastRow), prefix === "ASSAY" ? true : prefix === "ASSAY METADATA") {
|
|
30
30
|
matchResult = 0;
|
|
31
|
-
value(lastRow);
|
|
31
|
+
prefix_2 = value(lastRow);
|
|
32
32
|
} else if (value(lastRow) === "ASSAY PERFORMERS") {
|
|
33
33
|
matchResult = 1;
|
|
34
|
-
value(lastRow);
|
|
34
|
+
prefix_3 = value(lastRow);
|
|
35
35
|
} else {
|
|
36
36
|
matchResult = 2;
|
|
37
37
|
}
|
|
@@ -57,8 +57,8 @@ function ArcAssay_fromRows(rows) {
|
|
|
57
57
|
}
|
|
58
58
|
default: {
|
|
59
59
|
let matchResult_1, assays_2, contacts_2;
|
|
60
|
-
if (isEmpty
|
|
61
|
-
if (isEmpty
|
|
60
|
+
if (isEmpty(assays)) {
|
|
61
|
+
if (isEmpty(contacts)) {
|
|
62
62
|
matchResult_1 = 0;
|
|
63
63
|
} else {
|
|
64
64
|
matchResult_1 = 1;
|
|
@@ -81,6 +81,7 @@ function ArcAssay_fromRows(rows) {
|
|
|
81
81
|
}
|
|
82
82
|
}
|
|
83
83
|
}
|
|
84
|
+
break;
|
|
84
85
|
}
|
|
85
86
|
};
|
|
86
87
|
if (en["System.Collections.IEnumerator.MoveNext"]()) {
|
|
@@ -90,7 +91,7 @@ function ArcAssay_fromRows(rows) {
|
|
|
90
91
|
}
|
|
91
92
|
}
|
|
92
93
|
function ArcAssay_toRows(assay) {
|
|
93
|
-
return delay(() => append(singleton
|
|
94
|
+
return delay(() => append(singleton(SparseRowModule_fromValues(["ASSAY"])), delay(() => append(toRows("Assay", singleton$1(assay)), delay(() => append(singleton(SparseRowModule_fromValues(["ASSAY PERFORMERS"])), delay(() => toRows$1("Assay Person", ofSeq(assay.Performers)))))))));
|
|
94
95
|
}
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function ArcAssay_toMetadataCollection(assay) {
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}
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function ArcAssay_fromMetadataCollection(collection) {
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try {
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}
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assayMetadata.DataMap = datamapSheet;
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@@ -165,5 +177,8 @@ function ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay, datamapS
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}, assay.Tables);
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function ARCtrl_ArcAssay__ArcAssay_ToFsWorkbook_6FCE9E49(this$, datamapSheet) {
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return ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$, unwrap(datamapSheet));
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}
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export { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ArcAssay_fromMetadataSheet, ArcAssay_fromRows, ArcAssay_isMetadataSheet, ArcAssay_isMetadataSheetName, ArcAssay_toMetadataSheet, ArcAssay_toRows, ArcAssay_tryGetMetadataSheet };
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export { ARCtrl_ArcAssay__ArcAssay_ToFsWorkbook_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ArcAssay_fromMetadataCollection, ArcAssay_fromMetadataSheet, ArcAssay_fromRows, ArcAssay_isMetadataSheet, ArcAssay_isMetadataSheetName, ArcAssay_toMetadataCollection, ArcAssay_toMetadataSheet, ArcAssay_toRows, ArcAssay_tryGetMetadataSheet };
|
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@@ -1,15 +1,16 @@
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1
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import { Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
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import {
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import { Remark } from '../Core/Comment.js';
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import {
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import {
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import {
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import { ofArray, map, empty, cons, reverse, unzip, concat, append, ofSeq, isEmpty as isEmpty$1, tail, head } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
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+
import { Comment$_$reflection, Remark } from '../Core/Comment.js';
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import { stringHash, getEnumerator, comparePrimitives } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { record_type, string_type, list_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
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import { Comment_fromString, Comment_toString, Remark_wrapRemark } from './Metadata/Comment.js';
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+
import { SparseTable__TryGetValueDefault_5BAE6133, SparseTable_Create_Z2192E64B, SparseTable, SparseTable_FromRows_Z5579EC29, SparseTable_ToRows_759CAFC1, SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_getAllValues, SparseRowModule_fromAllValues, SparseRowModule_fromFsRow, SparseRowModule_writeToSheet } from './Metadata/SparseTable.js';
|
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import {
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import {
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import {
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import { defaultArg, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { ResizeArray_iter, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
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import { List_distinct, List_distinctBy } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
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import { ArcInvestigation, ArcStudy } from '../Core/ArcTypes.js';
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-
import {
|
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+
import { isEmpty, delay, append as append$1, singleton, collect, toList, map as map$1, tryFind as tryFind$1, iterateIndexed } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { fromRows as fromRows$3, toRows } from './Metadata/OntologySourceReference.js';
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import { fromRows as fromRows$2, toRows as toRows$1 } from './Metadata/Publication.js';
|
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import { fromRows as fromRows$1, toRows as toRows$2 } from './Metadata/Contacts.js';
|
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@@ -30,6 +31,9 @@ class ArcInvestigation_InvestigationInfo extends Record {
|
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this.Comments = Comments;
|
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}
|
|
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}
|
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+
function ArcInvestigation_InvestigationInfo_$reflection() {
|
|
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|
+
return record_type("ARCtrl.Spreadsheet.ArcInvestigation.InvestigationInfo", [], ArcInvestigation_InvestigationInfo, () => [["Identifier", string_type], ["Title", string_type], ["Description", string_type], ["SubmissionDate", string_type], ["PublicReleaseDate", string_type], ["Comments", list_type(Comment$_$reflection())]]);
|
|
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|
+
}
|
|
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|
function ArcInvestigation_InvestigationInfo_create(identifier, title, description, submissionDate, publicReleaseDate, comments) {
|
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|
return new ArcInvestigation_InvestigationInfo(identifier, title, description, submissionDate, publicReleaseDate, comments);
|
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|
}
|
|
@@ -83,7 +87,7 @@ function ArcInvestigation_fromParts(investigationInfo, ontologySourceReference,
|
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return ArcInvestigation.make(investigationInfo.Identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications_1, contacts_1, assays_1, studies_1, [], [], registeredStudyIdentifiers, comments, remarks_1);
|
|
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}
|
|
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|
function ArcInvestigation_fromRows(rows) {
|
|
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|
-
if (isEmpty
|
|
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|
+
if (isEmpty(rows)) {
|
|
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|
throw new Error("isa_investigation sheet in Investigation file is empty");
|
|
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|
}
|
|
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|
const en = getEnumerator(rows);
|
|
@@ -92,32 +96,32 @@ function ArcInvestigation_fromRows(rows) {
|
|
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|
loop:
|
|
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|
while (true) {
|
|
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|
const lastLine = lastLine_mut, ontologySourceReferences = ontologySourceReferences_mut, investigationInfo = investigationInfo_mut, publications = publications_mut, contacts = contacts_mut, studies = studies_mut, remarks = remarks_mut, lineNumber = lineNumber_mut;
|
|
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|
-
let matchResult;
|
|
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|
+
let matchResult, k_5, k_6, k_7, k_8, k_9;
|
|
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|
if (lastLine != null) {
|
|
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|
switch (value(lastLine)) {
|
|
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|
case "ONTOLOGY SOURCE REFERENCE": {
|
|
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|
matchResult = 0;
|
|
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|
-
value(lastLine);
|
|
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|
+
k_5 = value(lastLine);
|
|
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105
|
break;
|
|
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106
|
}
|
|
103
107
|
case "INVESTIGATION": {
|
|
104
108
|
matchResult = 1;
|
|
105
|
-
value(lastLine);
|
|
109
|
+
k_6 = value(lastLine);
|
|
106
110
|
break;
|
|
107
111
|
}
|
|
108
112
|
case "INVESTIGATION PUBLICATIONS": {
|
|
109
113
|
matchResult = 2;
|
|
110
|
-
value(lastLine);
|
|
114
|
+
k_7 = value(lastLine);
|
|
111
115
|
break;
|
|
112
116
|
}
|
|
113
117
|
case "INVESTIGATION CONTACTS": {
|
|
114
118
|
matchResult = 3;
|
|
115
|
-
value(lastLine);
|
|
119
|
+
k_8 = value(lastLine);
|
|
116
120
|
break;
|
|
117
121
|
}
|
|
118
122
|
case "STUDY": {
|
|
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123
|
matchResult = 4;
|
|
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|
-
value(lastLine);
|
|
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|
+
k_9 = value(lastLine);
|
|
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125
|
break;
|
|
122
126
|
}
|
|
123
127
|
default:
|
|
@@ -224,6 +228,7 @@ function ArcInvestigation_fromRows(rows) {
|
|
|
224
228
|
return ArcInvestigation_fromParts(investigationInfo, ontologySourceReferences, publications, contacts, patternInput_5[0], patternInput_5[1], remarks);
|
|
225
229
|
}
|
|
226
230
|
}
|
|
231
|
+
break;
|
|
227
232
|
}
|
|
228
233
|
};
|
|
229
234
|
let arcInvestigation;
|
|
@@ -250,7 +255,7 @@ function ArcInvestigation_toRows(investigation) {
|
|
|
250
255
|
const i = i_mut, l = l_mut, nl = nl_mut;
|
|
251
256
|
const matchValue = tryFind(i, rm);
|
|
252
257
|
if (matchValue == null) {
|
|
253
|
-
if (!isEmpty(l)) {
|
|
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|
+
if (!isEmpty$1(l)) {
|
|
254
259
|
i_mut = i + 1;
|
|
255
260
|
l_mut = tail(l);
|
|
256
261
|
nl_mut = cons(head(l), nl);
|
|
@@ -274,6 +279,12 @@ function ArcInvestigation_toRows(investigation) {
|
|
|
274
279
|
}
|
|
275
280
|
})();
|
|
276
281
|
}
|
|
282
|
+
function ArcInvestigation_toMetadataCollection(investigation) {
|
|
283
|
+
return map$1(SparseRowModule_getAllValues, ArcInvestigation_toRows(investigation));
|
|
284
|
+
}
|
|
285
|
+
function ArcInvestigation_fromMetadataCollection(collection) {
|
|
286
|
+
return ArcInvestigation_fromRows(map$1(SparseRowModule_fromAllValues, collection));
|
|
287
|
+
}
|
|
277
288
|
function ArcInvestigation_isMetadataSheetName(name) {
|
|
278
289
|
if (name === "isa_investigation") {
|
|
279
290
|
return true;
|
|
@@ -312,5 +323,8 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF
|
|
|
312
323
|
return toFail(printf("Could not write investigation to spreadsheet: %s"))(arg);
|
|
313
324
|
}
|
|
314
325
|
}
|
|
326
|
+
function ARCtrl_ArcInvestigation__ArcInvestigation_ToFsWorkbook(this$) {
|
|
327
|
+
return ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(this$);
|
|
328
|
+
}
|
|
315
329
|
|
|
316
|
-
export { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ArcInvestigation_InvestigationInfo, ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699, ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF, ArcInvestigation_InvestigationInfo_create, ArcInvestigation_InvestigationInfo_fromRows, ArcInvestigation_InvestigationInfo_get_Labels, ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF, ArcInvestigation_fromParts, ArcInvestigation_fromRows, ArcInvestigation_isMetadataSheet, ArcInvestigation_isMetadataSheetName, ArcInvestigation_toRows, ArcInvestigation_tryGetMetadataSheet };
|
|
330
|
+
export { ARCtrl_ArcInvestigation__ArcInvestigation_ToFsWorkbook, ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ArcInvestigation_InvestigationInfo, ArcInvestigation_InvestigationInfo_$reflection, ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699, ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF, ArcInvestigation_InvestigationInfo_create, ArcInvestigation_InvestigationInfo_fromRows, ArcInvestigation_InvestigationInfo_get_Labels, ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF, ArcInvestigation_fromMetadataCollection, ArcInvestigation_fromParts, ArcInvestigation_fromRows, ArcInvestigation_isMetadataSheet, ArcInvestigation_isMetadataSheetName, ArcInvestigation_toMetadataCollection, ArcInvestigation_toRows, ArcInvestigation_tryGetMetadataSheet };
|
|
@@ -5,12 +5,12 @@ import { empty, ofSeq } from '../../node_modules/@fable-org/fable-library-js/Lis
|
|
|
5
5
|
import { ArcRun } from '../Core/ArcTypes.js';
|
|
6
6
|
import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
|
|
7
7
|
import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
|
|
8
|
-
import {
|
|
9
|
-
import {
|
|
8
|
+
import { SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
|
|
9
|
+
import { delay, append, singleton, iterateIndexed, map, tryFind, choose, tryPick, isEmpty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
10
10
|
import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
|
|
11
|
-
import {
|
|
11
|
+
import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
12
12
|
import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
|
|
13
|
-
import {
|
|
13
|
+
import { tryFromFsWorksheet, toFsWorksheet } from './AnnotationTable/ArcTable.js';
|
|
14
14
|
import { tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
|
|
15
15
|
|
|
16
16
|
function ArcRun_fromRows(rows) {
|
|
@@ -19,17 +19,17 @@ function ArcRun_fromRows(rows) {
|
|
|
19
19
|
loop:
|
|
20
20
|
while (true) {
|
|
21
21
|
const lastRow = lastRow_mut, run = run_mut, performers = performers_mut, rowNumber = rowNumber_mut;
|
|
22
|
-
let matchResult;
|
|
22
|
+
let matchResult, prefix_2, prefix_3;
|
|
23
23
|
if (lastRow != null) {
|
|
24
24
|
switch (value(lastRow)) {
|
|
25
25
|
case "RUN": {
|
|
26
26
|
matchResult = 0;
|
|
27
|
-
value(lastRow);
|
|
27
|
+
prefix_2 = value(lastRow);
|
|
28
28
|
break;
|
|
29
29
|
}
|
|
30
30
|
case "RUN PERFORMERS": {
|
|
31
31
|
matchResult = 1;
|
|
32
|
-
value(lastRow);
|
|
32
|
+
prefix_3 = value(lastRow);
|
|
33
33
|
break;
|
|
34
34
|
}
|
|
35
35
|
default:
|
|
@@ -64,6 +64,7 @@ function ArcRun_fromRows(rows) {
|
|
|
64
64
|
return ArcRun.create(createMissingIdentifier(), void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, Array.from(performers));
|
|
65
65
|
}
|
|
66
66
|
}
|
|
67
|
+
break;
|
|
67
68
|
}
|
|
68
69
|
};
|
|
69
70
|
if (en["System.Collections.IEnumerator.MoveNext"]()) {
|
|
@@ -90,6 +91,17 @@ function ArcRun_fromMetadataSheet(sheet) {
|
|
|
90
91
|
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
91
92
|
}
|
|
92
93
|
}
|
|
94
|
+
function ArcRun_toMetadataCollection(run) {
|
|
95
|
+
return map(SparseRowModule_getAllValues, ArcRun_toRows(run));
|
|
96
|
+
}
|
|
97
|
+
function ArcRun_fromMetadataCollection(collection) {
|
|
98
|
+
try {
|
|
99
|
+
return ArcRun_fromRows(map(SparseRowModule_fromAllValues, collection));
|
|
100
|
+
} catch (err) {
|
|
101
|
+
const arg = err.message;
|
|
102
|
+
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
103
|
+
}
|
|
104
|
+
}
|
|
93
105
|
function ArcRun_isMetadataSheetName(name) {
|
|
94
106
|
return name === "isa_run";
|
|
95
107
|
}
|
|
@@ -132,5 +144,8 @@ function ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(run) {
|
|
|
132
144
|
}, run.Tables);
|
|
133
145
|
return doc;
|
|
134
146
|
}
|
|
147
|
+
function ARCtrl_ArcRun__ArcRun_ToFsWorkbook(this$) {
|
|
148
|
+
return ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$);
|
|
149
|
+
}
|
|
135
150
|
|
|
136
|
-
export { ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ArcRun_fromMetadataSheet, ArcRun_fromRows, ArcRun_isMetadataSheet, ArcRun_isMetadataSheetName, ArcRun_toMetadataSheet, ArcRun_toRows, ArcRun_tryGetMetadataSheet };
|
|
151
|
+
export { ARCtrl_ArcRun__ArcRun_ToFsWorkbook, ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ArcRun_fromMetadataCollection, ArcRun_fromMetadataSheet, ArcRun_fromRows, ArcRun_isMetadataSheet, ArcRun_isMetadataSheetName, ArcRun_toMetadataCollection, ArcRun_toMetadataSheet, ArcRun_toRows, ArcRun_tryGetMetadataSheet };
|
|
@@ -1,17 +1,17 @@
|
|
|
1
1
|
import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
|
|
2
|
-
import {
|
|
3
|
-
import { SparseRowModule_writeToSheet, SparseRowModule_fromFsRow,
|
|
2
|
+
import { iterateIndexed, append, map, tryFind, tryPick, iterate } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
3
|
+
import { SparseRowModule_writeToSheet, SparseRowModule_fromValues, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
|
|
4
4
|
import { toRows, fromRows } from './Metadata/Study.js';
|
|
5
5
|
import { ArcStudy } from '../Core/ArcTypes.js';
|
|
6
|
-
import { defaultArg, toArray,
|
|
6
|
+
import { defaultArg, value, toArray, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
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7
7
|
import { empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
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8
8
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import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
9
|
-
import {
|
|
9
|
+
import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
10
10
|
import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
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11
11
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import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
|
|
12
12
|
import { ResizeArray_choose, ResizeArray_isEmpty } from '../Core/Helper/Collections.js';
|
|
13
|
-
import { toFsWorksheet as toFsWorksheet$1
|
|
14
|
-
import {
|
|
13
|
+
import { tryFromFsWorksheet, toFsWorksheet as toFsWorksheet$1 } from './AnnotationTable/ArcTable.js';
|
|
14
|
+
import { tryFromFsWorksheet as tryFromFsWorksheet$1, toFsWorksheet } from './DataMapTable/DataMapTable.js';
|
|
15
15
|
|
|
16
16
|
function ArcStudy_toMetadataSheet(study, assays) {
|
|
17
17
|
let source_1;
|
|
@@ -34,6 +34,18 @@ function ArcStudy_fromMetadataSheet(sheet) {
|
|
|
34
34
|
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
35
35
|
}
|
|
36
36
|
}
|
|
37
|
+
function ArcStudy_toMetadataCollection(study, assays) {
|
|
38
|
+
let source_1;
|
|
39
|
+
return map(SparseRowModule_getAllValues, (source_1 = toRows(study, assays), append([SparseRowModule_fromValues(["STUDY"])], source_1)));
|
|
40
|
+
}
|
|
41
|
+
function ArcStudy_fromMetadataCollection(collection) {
|
|
42
|
+
try {
|
|
43
|
+
return defaultArg(ArcStudy_fromRows(map(SparseRowModule_fromAllValues, collection)), [ArcStudy.create(createMissingIdentifier()), empty()]);
|
|
44
|
+
} catch (err) {
|
|
45
|
+
const arg = err.message;
|
|
46
|
+
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
47
|
+
}
|
|
48
|
+
}
|
|
37
49
|
function ArcStudy_isMetadataSheetName(name) {
|
|
38
50
|
if (name === "isa_study") {
|
|
39
51
|
return true;
|
|
@@ -88,5 +100,8 @@ function ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, assays,
|
|
|
88
100
|
}, study.Tables);
|
|
89
101
|
return doc;
|
|
90
102
|
}
|
|
103
|
+
function ARCtrl_ArcStudy__ArcStudy_ToFsWorkbook_257FC1F0(this$, assays, datamapSheet) {
|
|
104
|
+
return ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$, unwrap(assays), unwrap(datamapSheet));
|
|
105
|
+
}
|
|
91
106
|
|
|
92
|
-
export { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522, ArcStudy_fromMetadataSheet, ArcStudy_fromRows, ArcStudy_isMetadataSheet, ArcStudy_isMetadataSheetName, ArcStudy_toMetadataSheet, ArcStudy_tryGetMetadataSheet };
|
|
107
|
+
export { ARCtrl_ArcStudy__ArcStudy_ToFsWorkbook_257FC1F0, ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522, ArcStudy_fromMetadataCollection, ArcStudy_fromMetadataSheet, ArcStudy_fromRows, ArcStudy_isMetadataSheet, ArcStudy_isMetadataSheetName, ArcStudy_toMetadataCollection, ArcStudy_toMetadataSheet, ArcStudy_tryGetMetadataSheet };
|
|
@@ -2,13 +2,13 @@ import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Ut
|
|
|
2
2
|
import { fromRows as fromRows$1, toRows } from './Metadata/Workflow.js';
|
|
3
3
|
import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
4
4
|
import { empty, ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
5
|
-
import {
|
|
5
|
+
import { ArcWorkflow__set_Contacts_Z7E0D1CA3, ArcWorkflow_create_Z3BB02240, ArcWorkflow__get_Contacts, ArcWorkflow__set_DataMap_51F1E59E } from '../Core/ArcTypes.js';
|
|
6
6
|
import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
|
|
7
7
|
import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
|
|
8
|
-
import {
|
|
9
|
-
import {
|
|
8
|
+
import { SparseRowModule_tryGetValueAt, SparseRowModule_fromValues, SparseRowModule_writeToSheet, SparseRowModule_fromFsRow, SparseRowModule_getAllValues, SparseRowModule_fromAllValues } from './Metadata/SparseTable.js';
|
|
9
|
+
import { delay, append, singleton, iterateIndexed, map, tryFind, tryPick } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
10
10
|
import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
|
|
11
|
-
import {
|
|
11
|
+
import { toFail, printf, toConsole } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
12
12
|
import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
|
|
13
13
|
import { tryFromFsWorksheet } from './DataMapTable/DataMapTable.js';
|
|
14
14
|
|
|
@@ -18,17 +18,17 @@ function ArcWorkflow_fromRows(rows) {
|
|
|
18
18
|
loop:
|
|
19
19
|
while (true) {
|
|
20
20
|
const lastRow = lastRow_mut, workflow = workflow_mut, contacts = contacts_mut, rowNumber = rowNumber_mut;
|
|
21
|
-
let matchResult;
|
|
21
|
+
let matchResult, prefix_2, prefix_3;
|
|
22
22
|
if (lastRow != null) {
|
|
23
23
|
switch (value(lastRow)) {
|
|
24
24
|
case "WORKFLOW": {
|
|
25
25
|
matchResult = 0;
|
|
26
|
-
value(lastRow);
|
|
26
|
+
prefix_2 = value(lastRow);
|
|
27
27
|
break;
|
|
28
28
|
}
|
|
29
29
|
case "WORKFLOW CONTACTS": {
|
|
30
30
|
matchResult = 1;
|
|
31
|
-
value(lastRow);
|
|
31
|
+
prefix_3 = value(lastRow);
|
|
32
32
|
break;
|
|
33
33
|
}
|
|
34
34
|
default:
|
|
@@ -63,6 +63,7 @@ function ArcWorkflow_fromRows(rows) {
|
|
|
63
63
|
return ArcWorkflow_create_Z3BB02240(createMissingIdentifier(), void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, Array.from(contacts));
|
|
64
64
|
}
|
|
65
65
|
}
|
|
66
|
+
break;
|
|
66
67
|
}
|
|
67
68
|
};
|
|
68
69
|
if (en["System.Collections.IEnumerator.MoveNext"]()) {
|
|
@@ -89,6 +90,17 @@ function ArcWorkflow_fromMetadataSheet(sheet) {
|
|
|
89
90
|
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
90
91
|
}
|
|
91
92
|
}
|
|
93
|
+
function ArcWorkflow_toMetadataCollection(workflow) {
|
|
94
|
+
return map(SparseRowModule_getAllValues, ArcWorkflow_toRows(workflow));
|
|
95
|
+
}
|
|
96
|
+
function ArcWorkflow_fromMetadataCollection(collection) {
|
|
97
|
+
try {
|
|
98
|
+
return ArcWorkflow_fromRows(map(SparseRowModule_fromAllValues, collection));
|
|
99
|
+
} catch (err) {
|
|
100
|
+
const arg = err.message;
|
|
101
|
+
return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
|
|
102
|
+
}
|
|
103
|
+
}
|
|
92
104
|
function ArcWorkflow_isMetadataSheetName(name) {
|
|
93
105
|
return name === "isa_workflow";
|
|
94
106
|
}
|
|
@@ -121,5 +133,8 @@ function ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(workflow)
|
|
|
121
133
|
doc.AddWorksheet(metadataSheet);
|
|
122
134
|
return doc;
|
|
123
135
|
}
|
|
136
|
+
function ARCtrl_ArcWorkflow__ArcWorkflow_ToFsWorkbook(this$) {
|
|
137
|
+
return ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$);
|
|
138
|
+
}
|
|
124
139
|
|
|
125
|
-
export { ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ArcWorkflow_fromMetadataSheet, ArcWorkflow_fromRows, ArcWorkflow_isMetadataSheet, ArcWorkflow_isMetadataSheetName, ArcWorkflow_toMetadataSheet, ArcWorkflow_toRows, ArcWorkflow_tryGetMetadataSheet };
|
|
140
|
+
export { ARCtrl_ArcWorkflow__ArcWorkflow_ToFsWorkbook, ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ArcWorkflow_fromMetadataCollection, ArcWorkflow_fromMetadataSheet, ArcWorkflow_fromRows, ArcWorkflow_isMetadataSheet, ArcWorkflow_isMetadataSheetName, ArcWorkflow_toMetadataCollection, ArcWorkflow_toMetadataSheet, ArcWorkflow_toRows, ArcWorkflow_tryGetMetadataSheet };
|