@nfdi4plants/arctrl 3.0.0-beta.5 → 3.0.0-beta.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (306) hide show
  1. package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +894 -4
  2. package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +121 -3
  3. package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +279 -1
  4. package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +101 -2
  5. package/dist/ts/node_modules/@fable-org/fable-library-js/Choice.js +187 -0
  6. package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +156 -2
  7. package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +183 -7
  8. package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +217 -5
  9. package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +154 -5
  10. package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +20 -1
  11. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Collections.js +30 -0
  12. package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +68 -1
  13. package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +6 -1
  14. package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +98 -1
  15. package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +18 -1
  16. package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +601 -5
  17. package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +10 -1
  18. package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +760 -16
  19. package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +26 -1
  20. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +18 -8
  21. package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +36 -4
  22. package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +35 -1
  23. package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +26 -1
  24. package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +355 -1
  25. package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +21 -2
  26. package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +133 -1
  27. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +543 -8
  28. package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +53 -4
  29. package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +673 -41
  30. package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +197 -4
  31. package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +128 -3
  32. package/dist/ts/node_modules/@fable-org/fable-library-js/SystemException.js +8 -0
  33. package/dist/ts/node_modules/@fable-org/fable-library-js/TimeSpan.js +180 -0
  34. package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +20 -2
  35. package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +406 -2
  36. package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +2 -2
  37. package/dist/ts/ts/ARC.d.ts +12 -5
  38. package/dist/ts/ts/ARC.d.ts.map +1 -1
  39. package/dist/ts/ts/ARC.js +172 -93
  40. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -1
  41. package/dist/ts/ts/Contract/ARC.js +8 -1
  42. package/dist/ts/ts/Contract/ArcAssay.js +14 -5
  43. package/dist/ts/ts/Contract/ArcInvestigation.js +10 -1
  44. package/dist/ts/ts/Contract/ArcRun.js +19 -6
  45. package/dist/ts/ts/Contract/ArcStudy.js +19 -6
  46. package/dist/ts/ts/Contract/ArcWorkflow.js +19 -6
  47. package/dist/ts/ts/Contract/Contract.js +42 -1
  48. package/dist/ts/ts/Contract/Datamap.js +61 -17
  49. package/dist/ts/ts/Contract/Git.d.ts.map +1 -1
  50. package/dist/ts/ts/Contract/Git.js +22 -6
  51. package/dist/ts/ts/Contract/License.d.ts +5 -0
  52. package/dist/ts/ts/Contract/License.d.ts.map +1 -0
  53. package/dist/ts/ts/Contract/License.js +34 -0
  54. package/dist/ts/ts/Contract/ValidationPackagesConfig.js +31 -6
  55. package/dist/ts/ts/ContractIO/ContractIO.js +5 -5
  56. package/dist/ts/ts/ContractIO/FileSystemHelper.js +16 -4
  57. package/dist/ts/ts/Conversion.js +321 -48
  58. package/dist/ts/ts/Core/ArcTypes.js +216 -15
  59. package/dist/ts/ts/Core/Comment.js +11 -1
  60. package/dist/ts/ts/Core/CommentList.js +77 -2
  61. package/dist/ts/ts/Core/Conversion.js +123 -43
  62. package/dist/ts/ts/Core/Data.js +9 -2
  63. package/dist/ts/ts/Core/DataContext.js +19 -4
  64. package/dist/ts/ts/Core/DataFile.js +38 -1
  65. package/dist/ts/ts/Core/DataMap.js +111 -5
  66. package/dist/ts/ts/Core/Helper/Collections.js +106 -5
  67. package/dist/ts/ts/Core/Helper/HashCodes.js +4 -4
  68. package/dist/ts/ts/Core/Helper/Identifier.js +100 -2
  69. package/dist/ts/ts/Core/Helper/Regex.js +134 -2
  70. package/dist/ts/ts/Core/Helper/SemVer.js +23 -2
  71. package/dist/ts/ts/Core/IdentifierSetters.js +27 -3
  72. package/dist/ts/ts/Core/OntologyAnnotation.js +4 -1
  73. package/dist/ts/ts/Core/OntologySourceReference.js +8 -1
  74. package/dist/ts/ts/Core/Person.js +8 -1
  75. package/dist/ts/ts/Core/Process/ColumnIndex.js +121 -4
  76. package/dist/ts/ts/Core/Process/Component.js +37 -4
  77. package/dist/ts/ts/Core/Process/Factor.js +9 -4
  78. package/dist/ts/ts/Core/Process/FactorValue.js +61 -4
  79. package/dist/ts/ts/Core/Process/Material.js +14 -4
  80. package/dist/ts/ts/Core/Process/MaterialAttribute.js +41 -3
  81. package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +67 -4
  82. package/dist/ts/ts/Core/Process/MaterialType.js +15 -1
  83. package/dist/ts/ts/Core/Process/Process.js +150 -7
  84. package/dist/ts/ts/Core/Process/ProcessInput.js +48 -8
  85. package/dist/ts/ts/Core/Process/ProcessOutput.js +44 -7
  86. package/dist/ts/ts/Core/Process/ProcessParameterValue.js +10 -5
  87. package/dist/ts/ts/Core/Process/ProcessSequence.js +127 -6
  88. package/dist/ts/ts/Core/Process/Protocol.js +78 -4
  89. package/dist/ts/ts/Core/Process/ProtocolParameter.js +6 -2
  90. package/dist/ts/ts/Core/Process/Sample.js +21 -3
  91. package/dist/ts/ts/Core/Process/Source.js +13 -3
  92. package/dist/ts/ts/Core/Publication.js +8 -1
  93. package/dist/ts/ts/Core/Table/ArcTable.js +34 -25
  94. package/dist/ts/ts/Core/Table/ArcTableAux.js +150 -23
  95. package/dist/ts/ts/Core/Table/ArcTables.js +24 -15
  96. package/dist/ts/ts/Core/Table/CompositeCell.js +7 -3
  97. package/dist/ts/ts/Core/Table/CompositeColumn.js +8 -4
  98. package/dist/ts/ts/Core/Table/CompositeHeader.js +18 -15
  99. package/dist/ts/ts/Core/Template.js +12 -2
  100. package/dist/ts/ts/Core/Templates.js +8 -4
  101. package/dist/ts/ts/Core/Value.js +7 -3
  102. package/dist/ts/ts/CrossAsync.js +11 -1
  103. package/dist/ts/ts/FileSystem/Commit.js +18 -0
  104. package/dist/ts/ts/FileSystem/FileSystem.js +8 -3
  105. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +1 -0
  106. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -1
  107. package/dist/ts/ts/FileSystem/FileSystemTree.js +20 -13
  108. package/dist/ts/ts/FileSystem/Path.d.ts +2 -0
  109. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -1
  110. package/dist/ts/ts/FileSystem/Path.js +17 -3
  111. package/dist/ts/ts/Json/Assay.js +26 -26
  112. package/dist/ts/ts/Json/Comment.js +10 -10
  113. package/dist/ts/ts/Json/Data.js +6 -6
  114. package/dist/ts/ts/Json/DataMap/DataContext.js +4 -4
  115. package/dist/ts/ts/Json/DataMap/DataMap.js +2 -2
  116. package/dist/ts/ts/Json/Decode.js +14 -9
  117. package/dist/ts/ts/Json/Encode.js +43 -11
  118. package/dist/ts/ts/Json/Investigation.js +40 -22
  119. package/dist/ts/ts/Json/OntologyAnnotation.js +5 -5
  120. package/dist/ts/ts/Json/OntologySourceReference.js +2 -2
  121. package/dist/ts/ts/Json/Person.js +26 -26
  122. package/dist/ts/ts/Json/Process/Component.js +9 -6
  123. package/dist/ts/ts/Json/Process/Factor.js +3 -3
  124. package/dist/ts/ts/Json/Process/FactorValue.js +8 -8
  125. package/dist/ts/ts/Json/Process/Material.js +9 -9
  126. package/dist/ts/ts/Json/Process/MaterialAttribute.js +1 -1
  127. package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +8 -8
  128. package/dist/ts/ts/Json/Process/Process.js +12 -12
  129. package/dist/ts/ts/Json/Process/ProcessInput.js +4 -4
  130. package/dist/ts/ts/Json/Process/ProcessOutput.js +3 -3
  131. package/dist/ts/ts/Json/Process/ProcessParameterValue.js +10 -7
  132. package/dist/ts/ts/Json/Process/Protocol.js +12 -12
  133. package/dist/ts/ts/Json/Process/ProtocolParameter.js +3 -3
  134. package/dist/ts/ts/Json/Process/Sample.js +14 -14
  135. package/dist/ts/ts/Json/Process/Source.js +9 -9
  136. package/dist/ts/ts/Json/Process/Value.js +1 -1
  137. package/dist/ts/ts/Json/PropertyValue.js +1 -1
  138. package/dist/ts/ts/Json/Publication.js +6 -6
  139. package/dist/ts/ts/Json/ROCrate/LDContext.js +1 -0
  140. package/dist/ts/ts/Json/ROCrate/LDGraph.js +3 -3
  141. package/dist/ts/ts/Json/ROCrate/LDNode.js +19 -19
  142. package/dist/ts/ts/Json/Run.js +7 -7
  143. package/dist/ts/ts/Json/StringTable.js +1 -1
  144. package/dist/ts/ts/Json/Study.js +32 -32
  145. package/dist/ts/ts/Json/Table/ArcTable.js +29 -29
  146. package/dist/ts/ts/Json/Table/CellTable.js +6 -6
  147. package/dist/ts/ts/Json/Table/CompositeCell.js +4 -4
  148. package/dist/ts/ts/Json/Table/CompositeHeader.js +2 -2
  149. package/dist/ts/ts/Json/Table/IOType.js +1 -1
  150. package/dist/ts/ts/Json/Table/OATable.js +7 -7
  151. package/dist/ts/ts/Json/Table/Templates.js +92 -6
  152. package/dist/ts/ts/Json/Workflow.js +11 -11
  153. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.js +27 -1
  154. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.js +17 -1
  155. package/dist/ts/ts/Json/context/rocrate/isa_data_context.js +19 -1
  156. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.js +27 -1
  157. package/dist/ts/ts/Json/context/rocrate/isa_material_context.js +20 -1
  158. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.js +18 -1
  159. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.js +20 -1
  160. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.js +16 -1
  161. package/dist/ts/ts/Json/context/rocrate/isa_person_context.js +25 -1
  162. package/dist/ts/ts/Json/context/rocrate/isa_process_context.js +24 -1
  163. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.js +23 -1
  164. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.js +20 -1
  165. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.js +19 -1
  166. package/dist/ts/ts/Json/context/rocrate/isa_source_context.js +19 -1
  167. package/dist/ts/ts/Json/context/rocrate/isa_study_context.js +35 -1
  168. package/dist/ts/ts/Json/context/rocrate/rocrate_context.js +61 -0
  169. package/dist/ts/ts/Json.d.ts +13 -1
  170. package/dist/ts/ts/Json.d.ts.map +1 -1
  171. package/dist/ts/ts/Json.js +89 -2
  172. package/dist/ts/ts/JsonIO/Assay.js +15 -3
  173. package/dist/ts/ts/JsonIO/Investigation.js +15 -3
  174. package/dist/ts/ts/JsonIO/LDObject.js +17 -3
  175. package/dist/ts/ts/JsonIO/OntologyAnnotation.js +12 -2
  176. package/dist/ts/ts/JsonIO/Person.d.ts +16 -0
  177. package/dist/ts/ts/JsonIO/Person.d.ts.map +1 -0
  178. package/dist/ts/ts/JsonIO/Person.js +67 -0
  179. package/dist/ts/ts/JsonIO/Run.js +9 -3
  180. package/dist/ts/ts/JsonIO/Study.js +15 -3
  181. package/dist/ts/ts/JsonIO/Table/Compression.js +3 -3
  182. package/dist/ts/ts/JsonIO/Table/Templates.js +60 -5
  183. package/dist/ts/ts/JsonIO/Workflow.js +9 -3
  184. package/dist/ts/ts/License.d.ts +39 -0
  185. package/dist/ts/ts/License.d.ts.map +1 -0
  186. package/dist/ts/ts/License.js +123 -0
  187. package/dist/ts/ts/ROCrate/Generic/Comment.js +5 -1
  188. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts +69 -0
  189. package/dist/ts/ts/ROCrate/Generic/CreativeWork.d.ts.map +1 -0
  190. package/dist/ts/ts/ROCrate/Generic/CreativeWork.js +450 -0
  191. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +1 -0
  192. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +1 -1
  193. package/dist/ts/ts/ROCrate/Generic/Dataset.js +27 -1
  194. package/dist/ts/ts/ROCrate/Generic/DefinedTerm.js +5 -1
  195. package/dist/ts/ts/ROCrate/Generic/File.js +5 -1
  196. package/dist/ts/ts/ROCrate/Generic/LabProcess.js +5 -1
  197. package/dist/ts/ts/ROCrate/Generic/LabProtocol.js +5 -1
  198. package/dist/ts/ts/ROCrate/Generic/Organization.js +5 -1
  199. package/dist/ts/ts/ROCrate/Generic/Person.js +7 -2
  200. package/dist/ts/ts/ROCrate/Generic/PostalAddress.js +5 -1
  201. package/dist/ts/ts/ROCrate/Generic/PropertyValue.js +19 -15
  202. package/dist/ts/ts/ROCrate/Generic/Sample.js +5 -1
  203. package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.js +5 -1
  204. package/dist/ts/ts/ROCrate/LDContext.js +15 -6
  205. package/dist/ts/ts/ROCrate/LDObject.js +53 -17
  206. package/dist/ts/ts/ROCrateIO.d.ts +9 -3
  207. package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
  208. package/dist/ts/ts/ROCrateIO.js +67 -14
  209. package/dist/ts/ts/Spreadsheet/AnnotationTable/ArcTable.js +18 -15
  210. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeCell.js +5 -4
  211. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +40 -17
  212. package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js +4 -4
  213. package/dist/ts/ts/Spreadsheet/ArcAssay.js +30 -15
  214. package/dist/ts/ts/Spreadsheet/ArcInvestigation.js +32 -18
  215. package/dist/ts/ts/Spreadsheet/ArcRun.js +23 -8
  216. package/dist/ts/ts/Spreadsheet/ArcStudy.js +22 -7
  217. package/dist/ts/ts/Spreadsheet/ArcWorkflow.js +23 -8
  218. package/dist/ts/ts/Spreadsheet/CollectionAux.js +75 -5
  219. package/dist/ts/ts/Spreadsheet/DataMap.js +1 -1
  220. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapColumn.js +4 -4
  221. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapHeader.js +8 -8
  222. package/dist/ts/ts/Spreadsheet/DataMapTable/DataMapTable.js +4 -4
  223. package/dist/ts/ts/Spreadsheet/Metadata/Assays.js +6 -6
  224. package/dist/ts/ts/Spreadsheet/Metadata/Comment.js +1 -1
  225. package/dist/ts/ts/Spreadsheet/Metadata/Contacts.js +2 -2
  226. package/dist/ts/ts/Spreadsheet/Metadata/Conversions.js +6 -3
  227. package/dist/ts/ts/Spreadsheet/Metadata/DesignDescriptors.js +9 -3
  228. package/dist/ts/ts/Spreadsheet/Metadata/Factors.js +6 -4
  229. package/dist/ts/ts/Spreadsheet/Metadata/OntologyAnnotation.js +7 -5
  230. package/dist/ts/ts/Spreadsheet/Metadata/OntologySourceReference.js +1 -1
  231. package/dist/ts/ts/Spreadsheet/Metadata/Protocols.js +10 -8
  232. package/dist/ts/ts/Spreadsheet/Metadata/Publication.js +5 -5
  233. package/dist/ts/ts/Spreadsheet/Metadata/Run.js +6 -6
  234. package/dist/ts/ts/Spreadsheet/Metadata/SparseTable.js +246 -10
  235. package/dist/ts/ts/Spreadsheet/Metadata/Study.js +19 -13
  236. package/dist/ts/ts/Spreadsheet/Metadata/Workflow.js +5 -5
  237. package/dist/ts/ts/Template.Web.js +5 -1
  238. package/dist/ts/ts/ValidationPackages/ValidationPackage.js +8 -1
  239. package/dist/ts/ts/ValidationPackages/ValidationPackagesConfig.js +10 -3
  240. package/dist/ts/ts/WebRequest/WebRequest.Node.js +1 -0
  241. package/dist/ts/ts/Xlsx.js +41 -1
  242. package/dist/ts/ts/Yaml/ValidationPackage.js +18 -2
  243. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -2
  244. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js +27 -4
  245. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/FableJS.fs.js +14 -3
  246. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/HashCodes.fs.js +30 -4
  247. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/PropertyHelper.fs.js +5 -1
  248. package/dist/ts/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.js +65 -2
  249. package/dist/ts/ts/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +257 -1
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  253. package/dist/ts/ts/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +80 -2
  254. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Cells/FsCell.fs.js +63 -4
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  263. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js +9 -2
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  265. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/HashCodes.fs.js +31 -1
  266. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Cell.fs.js +65 -0
  267. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Column.fs.js +38 -0
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  270. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Value.fs.js +49 -3
  271. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Json/Workbook.fs.js +44 -0
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  278. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTable.fs.js +12 -5
  279. package/dist/ts/ts/fable_modules/FsSpreadsheet.7.0.0-alpha.1/Tables/FsTableField.fs.js +12 -3
  280. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Cell.fs.js +2 -2
  281. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js +42 -3
  282. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Json.fs.js +53 -0
  283. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Table.fs.js +9 -9
  284. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Workbook.fs.js +1 -1
  285. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Worksheet.fs.js +2 -2
  286. package/dist/ts/ts/fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/Xlsx.fs.js +5 -1
  287. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js +730 -23
  288. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js +192 -7
  289. package/dist/ts/ts/fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js +45 -1
  290. package/dist/ts/ts/fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js +15 -2
  291. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.js +1383 -15
  292. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.js +45 -4
  293. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.js +10 -0
  294. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.js +5 -5
  295. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.js +16 -6
  296. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.js +26 -23
  297. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.js +1 -1
  298. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.js +8 -8
  299. package/dist/ts/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js +18 -2
  300. package/package.json +1 -1
  301. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts +0 -2
  302. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +0 -1
  303. package/dist/ts/ts/FileSystem/DefaultGitattributes.js +0 -3
  304. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts +0 -2
  305. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +0 -1
  306. package/dist/ts/ts/FileSystem/DefaultGitignore.js +0 -3
@@ -1,23 +1,23 @@
1
- import { Option_fromValueWithDefault, ResizeArray_map } from '../Core/Helper/Collections.js';
2
- import { defaultArgWith, map, value, defaultArg, unwrap, bind } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
- import { ofArray, map as map$1, empty, choose, singleton, tryFind } from '../../node_modules/@fable-org/fable-library-js/List.js';
4
- import { ArcStudy, ArcAssay } from '../Core/ArcTypes.js';
1
+ import { ResizeArray_map, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
2
+ import { defaultArg, value, map, unwrap, bind, defaultArgWith } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
+ import { tryFind, choose, ofArray, singleton, map as map$2, empty } from '../../node_modules/@fable-org/fable-library-js/List.js';
4
+ import { ArcAssay, ArcStudy } from '../Core/ArcTypes.js';
5
5
  import { tryInclude, tryIncludeSeq, tryIncludeList } from './Encode.js';
6
- import { ISAJson_decoder as ISAJson_decoder$2, decoder as decoder$1, ROCrate_decoder as ROCrate_decoder$2, encoder as encoder$1, ROCrate_encoder as ROCrate_encoder$1, ISAJson_encoder as ISAJson_encoder$2 } from './Publication.js';
7
- import { ISAJson_decoder as ISAJson_decoder$5, decoder as decoder$2, ROCrate_decoder as ROCrate_decoder$3, encoder as encoder$2, ROCrate_encoder as ROCrate_encoder$2, ISAJson_encoder as ISAJson_encoder$3 } from './Person.js';
8
- import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_encoder, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ISAJson_encoder } from './OntologyAnnotation.js';
9
- import { decoder as decoder$3, decoderCompressed as decoderCompressed$1, encoder as encoder$3, encoderCompressed as encoderCompressed$1 } from './Table/ArcTable.js';
10
- import { decoder as decoder$4, decoderCompressed as decoderCompressed$2, encoder as encoder$4, encoderCompressed as encoderCompressed$2 } from './DataMap/DataMap.js';
11
- import { ISAJson_decoder as ISAJson_decoder$3, decoder as decoder$5, ROCrate_decoder as ROCrate_decoder$4, encoder as encoder$5, ROCrate_encoder as ROCrate_encoder$6, ISAJson_encoder as ISAJson_encoder$6 } from './Comment.js';
12
- import { isEmpty, map as map$2 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
- import { string, list, resizeArray, object } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
6
+ import { encoder as encoder$1, decoder as decoder$1, ROCrate_encoder as ROCrate_encoder$1, ROCrate_decoder as ROCrate_decoder$3, ISAJson_encoder as ISAJson_encoder$2, ISAJson_decoder as ISAJson_decoder$4 } from './Publication.js';
7
+ import { encoder as encoder$2, decoder as decoder$2, ROCrate_encoder as ROCrate_encoder$2, ROCrate_decoder as ROCrate_decoder$4, ISAJson_encoder as ISAJson_encoder$3, ISAJson_decoder as ISAJson_decoder$3 } from './Person.js';
8
+ import { OntologyAnnotation_encoder, OntologyAnnotation_decoder, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ISAJson_decoder } from './OntologyAnnotation.js';
9
+ import { encoder as encoder$3, decoder as decoder$3, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './Table/ArcTable.js';
10
+ import { encoder as encoder$4, decoder as decoder$4, encoderCompressed as encoderCompressed$2, decoderCompressed as decoderCompressed$2 } from './DataMap/DataMap.js';
11
+ import { encoder as encoder$5, decoder as decoder$5, ROCrate_encoder as ROCrate_encoder$6, ROCrate_decoder as ROCrate_decoder$5, ISAJson_encoder as ISAJson_encoder$6, ISAJson_decoder as ISAJson_decoder$5 } from './Comment.js';
12
+ import { map as map$1, isEmpty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
+ import { object, string, resizeArray, list as list$1 } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
14
14
  import { getEnumerator, disposeSafe } from '../../node_modules/@fable-org/fable-library-js/Util.js';
15
15
  import { replace } from '../../node_modules/@fable-org/fable-library-js/String.js';
16
- import { createMissingIdentifier, Study_tryIdentifierFromFileName, Study_tryFileNameFromIdentifier, Study_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
17
- import { ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, Person_getSourceAssayIdentifiersFromComments, Person_removeSourceAssayComments, ARCtrl_ArcTables__ArcTables_GetProcesses, Person_setSourceAssayComment } from '../Core/Conversion.js';
18
- import { list as list$1 } from '../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
19
- import { ISAJson_decoder as ISAJson_decoder$1, ROCrate_decoder as ROCrate_decoder$1, ROCrate_encoder as ROCrate_encoder$3, ISAJson_encoder as ISAJson_encoder$4 } from './Process/Process.js';
20
- import { ISAJson_decoder as ISAJson_decoder$4, ROCrate_decoder as ROCrate_decoder$5, ROCrate_encoder as ROCrate_encoder$4, ISAJson_encoder as ISAJson_encoder$5 } from './Assay.js';
16
+ import { Study_tryFileNameFromIdentifier, Study_tryIdentifierFromFileName, createMissingIdentifier, Study_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
17
+ import { ARCtrl_ArcTables__ArcTables_GetProcesses, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D, Person_setSourceAssayComment, Person_getSourceAssayIdentifiersFromComments, Person_removeSourceAssayComments } from '../Core/Conversion.js';
18
+ import { list } from '../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
19
+ import { ROCrate_encoder as ROCrate_encoder$3, ROCrate_decoder as ROCrate_decoder$2, ISAJson_encoder as ISAJson_encoder$4, ISAJson_decoder as ISAJson_decoder$1 } from './Process/Process.js';
20
+ import { ROCrate_encoder as ROCrate_encoder$4, ROCrate_decoder as ROCrate_decoder$1, ISAJson_encoder as ISAJson_encoder$5, ISAJson_decoder as ISAJson_decoder$2 } from './Assay.js';
21
21
  import { ROCrate_encoder as ROCrate_encoder$5 } from './Data.js';
22
22
  import { getData, getUnits, getFactors, getCharacteristics, getProtocols } from '../Core/Process/ProcessSequence.js';
23
23
  import { context_jsonvalue } from './context/rocrate/isa_study_context.js';
@@ -64,7 +64,7 @@ function encoder(study) {
64
64
  }), study.RegisteredAssayIdentifiers), tryIncludeSeq("Comments", encoder$5, study.Comments)]));
65
65
  return {
66
66
  Encode(helpers_6) {
67
- const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
67
+ const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
68
68
  return helpers_6.encodeObject(arg);
69
69
  }
70
70
  };
@@ -102,7 +102,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, study) {
102
102
  }), study.RegisteredAssayIdentifiers), tryIncludeSeq("Comments", encoder$5, study.Comments)]));
103
103
  return {
104
104
  Encode(helpers_6) {
105
- const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
105
+ const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
106
106
  return helpers_6.encodeObject(arg);
107
107
  }
108
108
  };
@@ -110,7 +110,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, study) {
110
110
  function decoderCompressed(stringTable, oaTable, cellTable) {
111
111
  return object((get$) => {
112
112
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
113
- return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((arg_19 = decoderCompressed$2(), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
113
+ return new ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15))), unwrap((arg_17 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17))), unwrap((arg_19 = decoderCompressed$2(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
114
114
  });
115
115
  }
116
116
  function ROCrate_genID(a) {
@@ -130,7 +130,7 @@ function ROCrate_encoder(assays, s) {
130
130
  Encode(helpers) {
131
131
  return helpers.encodeString(value);
132
132
  }
133
- })], ["@type", list$1(singleton({
133
+ })], ["@type", list(singleton({
134
134
  Encode(helpers_1) {
135
135
  return helpers_1.encodeString("Study");
136
136
  }
@@ -165,7 +165,7 @@ function ROCrate_encoder(assays, s) {
165
165
  }), s.PublicReleaseDate), tryIncludeSeq("publications", ROCrate_encoder$1, s.Publications), tryIncludeSeq("people", ROCrate_encoder$2, s.Contacts), tryIncludeList("processSequence", (studyName = s.Identifier, (oa_3) => ROCrate_encoder$3(studyName, void 0, oa_3)), processes), tryIncludeSeq("assays", (assayName_1 = s.Identifier, (a_1) => ROCrate_encoder$4(assayName_1, a_1)), assays_1), tryIncludeList("dataFiles", ROCrate_encoder$5, getData(processes)), tryIncludeSeq("comments", ROCrate_encoder$6, s.Comments), ["@context", context_jsonvalue]]));
166
166
  return {
167
167
  Encode(helpers_9) {
168
- const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
168
+ const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
169
169
  return helpers_9.encodeObject(arg);
170
170
  }
171
171
  };
@@ -174,15 +174,15 @@ const ROCrate_decoder = object((get$) => {
174
174
  let objectArg, arg_6, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_16, objectArg_7, arg_18, objectArg_8, arg_20, objectArg_9, arg_22, objectArg_10;
175
175
  const identifier = defaultArg(bind(Study_tryIdentifierFromFileName, (objectArg = get$.Optional, objectArg.Field("filename", string))), createMissingIdentifier());
176
176
  let assays;
177
- const arg_3 = list(ROCrate_decoder$5);
177
+ const arg_3 = list$1(ROCrate_decoder$1);
178
178
  const objectArg_1 = get$.Optional;
179
179
  assays = objectArg_1.Field("assays", arg_3);
180
180
  const assayIdentifiers = map((arg_4) => {
181
- const collection = map$1((a) => a.Identifier, arg_4);
181
+ const collection = map$2((a) => a.Identifier, arg_4);
182
182
  return Array.from(collection);
183
183
  }, assays);
184
- const tables = map((ps) => ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps).Tables, (arg_6 = list(ROCrate_decoder$1), objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_6)));
185
- return [new ArcStudy(identifier, unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("title", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("description", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string))), unwrap((arg_16 = resizeArray(ROCrate_decoder$2), objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16))), unwrap((arg_18 = resizeArray(ROCrate_decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18))), unwrap((arg_20 = resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_22 = resizeArray(ROCrate_decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22)))), defaultArg(assays, empty())];
184
+ const tables = map((ps) => ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(ps).Tables, (arg_6 = list$1(ROCrate_decoder$2), objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_6)));
185
+ return [new ArcStudy(identifier, unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("title", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("description", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", string))), unwrap((arg_16 = resizeArray(ROCrate_decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16))), unwrap((arg_18 = resizeArray(ROCrate_decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18))), unwrap((arg_20 = resizeArray(OntologyAnnotation_ROCrate_decoderDefinedTerm), objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_22 = resizeArray(ROCrate_decoder$5), objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22)))), defaultArg(assays, empty())];
186
186
  });
187
187
  function ISAJson_encoder(idMap, assays, s) {
188
188
  const f = (s_1) => {
@@ -251,7 +251,7 @@ function ISAJson_encoder(idMap, assays, s) {
251
251
  }), study.PublicReleaseDate), tryIncludeSeq("publications", (oa_2) => ISAJson_encoder$2(idMap, oa_2), study.Publications), tryIncludeSeq("people", (person_2) => ISAJson_encoder$3(idMap, person_2), study.Contacts), tryIncludeSeq("studyDesignDescriptors", (oa_3) => OntologyAnnotation_ISAJson_encoder(idMap, oa_3), study.StudyDesignDescriptors), encodedProtocols, encodedMaterials, tryIncludeList("processSequence", (studyName_1 = s_1.Identifier, (oa_4) => ISAJson_encoder$4(studyName_1, void 0, idMap, oa_4)), processes), tryIncludeSeq("assays", (studyName_2 = s_1.Identifier, (a_2) => ISAJson_encoder$5(studyName_2, idMap, a_2)), assays_1), encodedFactors, encodedCharacteristics, encodedUnits, tryIncludeSeq("comments", (comment) => ISAJson_encoder$6(idMap, comment), study.Comments)]));
252
252
  return {
253
253
  Encode(helpers_7) {
254
- const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
254
+ const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
255
255
  return helpers_7.encodeObject(arg);
256
256
  }
257
257
  };
@@ -272,13 +272,13 @@ const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedField
272
272
  const tables = map((arg_6) => {
273
273
  const a = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D(arg_6);
274
274
  return a.Tables;
275
- }, (arg_5 = list(ISAJson_decoder$1), objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_5)));
275
+ }, (arg_5 = list$1(ISAJson_decoder$1), objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_5)));
276
276
  let assays;
277
- const arg_8 = list(ISAJson_decoder$4);
277
+ const arg_8 = list$1(ISAJson_decoder$2);
278
278
  const objectArg_3 = get$.Optional;
279
279
  assays = objectArg_3.Field("assays", arg_8);
280
280
  let personsRaw;
281
- const arg_10 = resizeArray(ISAJson_decoder$5);
281
+ const arg_10 = resizeArray(ISAJson_decoder$3);
282
282
  const objectArg_4 = get$.Optional;
283
283
  personsRaw = objectArg_4.Field("people", arg_10);
284
284
  const persons = [];
@@ -317,10 +317,10 @@ const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedField
317
317
  }
318
318
  }
319
319
  const assayIdentifiers = map((arg_11) => {
320
- const collection = map$1((a_1) => a_1.Identifier, arg_11);
320
+ const collection = map$2((a_1) => a_1.Identifier, arg_11);
321
321
  return Array.from(collection);
322
322
  }, assays);
323
- return [new ArcStudy(identifier, unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("title", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("description", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", string))), unwrap((arg_21 = resizeArray(ISAJson_decoder$2), objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21))), unwrap(persons.length === 0 ? void 0 : persons), unwrap((arg_23 = resizeArray(OntologyAnnotation_ISAJson_decoder), objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_25 = resizeArray(ISAJson_decoder$3), objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25)))), defaultArg(assays, empty())];
323
+ return [new ArcStudy(identifier, unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("title", string))), unwrap((objectArg_6 = get$.Optional, objectArg_6.Field("description", string))), unwrap((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", string))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", string))), unwrap((arg_21 = resizeArray(ISAJson_decoder$4), objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21))), unwrap(persons.length === 0 ? void 0 : persons), unwrap((arg_23 = resizeArray(OntologyAnnotation_ISAJson_decoder), objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23))), unwrap(tables), void 0, unwrap(assayIdentifiers), unwrap((arg_25 = resizeArray(ISAJson_decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25)))), defaultArg(assays, empty())];
324
324
  });
325
325
 
326
326
  export { Helper_getAssayInformation, ISAJson_allowedFields, ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID, decoder, decoderCompressed, encoder, encoderCompressed };
@@ -1,34 +1,34 @@
1
- import { arrayHash, equalArrays, getEnumerator, disposeSafe, int32ToString, compareArrays } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
2
- import { decoder as decoder$1, encoder as encoder$2 } from './CompositeCell.js';
1
+ import { compareArrays, arrayHash, equalArrays, getEnumerator, disposeSafe, int32ToString } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
2
+ import { encoder as encoder$1, decoder as decoder$2 } from './CompositeCell.js';
3
3
  import { getItemFromDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
4
4
  import { ErrorReason$1_BadPrimitive } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
5
- import { toList, delay, map as map$1, append, singleton, empty as empty$2 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
6
- import { list as list$1 } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
7
- import { decoder as decoder$2, encoder as encoder$1 } from './CompositeHeader.js';
5
+ import { toList, delay, append, singleton, map, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
6
+ import { list } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
7
+ import { encoder as encoder$2, decoder as decoder$1 } from './CompositeHeader.js';
8
8
  import { intDictionary } from '../Encode.js';
9
- import { ColumnValueRefs_Constant, ColumnValueRefs_Sparse, ensureCellHashInValueMap, ArcTableValues, Unchecked_setCellAt } from '../../Core/Table/ArcTableAux.js';
9
+ import { ensureCellHashInValueMap, ColumnValueRefs_Constant, ColumnValueRefs_Sparse, ArcTableValues, Unchecked_setCellAt } from '../../Core/Table/ArcTableAux.js';
10
10
  import { ArcTable } from '../../Core/Table/ArcTable.js';
11
- import { map, object, list, map$0027, string, resizeArray, int, Helpers_prependPath, tuple2, array } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
11
+ import { object, list as list$1, map$0027, tuple2, int, string, map as map$1, resizeArray, array, Helpers_prependPath } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
12
12
  import { defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
13
- import { ofArray, empty } from '../../../node_modules/@fable-org/fable-library-js/List.js';
13
+ import { empty as empty$1, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
14
14
  import { Dictionary } from '../../../node_modules/@fable-org/fable-library-js/MutableMap.js';
15
- import { empty as empty$1 } from '../../../node_modules/@fable-org/fable-library-js/Map.js';
15
+ import { empty as empty$2 } from '../../../node_modules/@fable-org/fable-library-js/Map.js';
16
16
  import { Decode_tryOneOf, Decode_intDictionary, Decode_dictionary } from '../Decode.js';
17
- import { FSharpResult$2_Ok, FSharpResult$2_Error } from '../../../node_modules/@fable-org/fable-library-js/Result.js';
17
+ import { FSharpResult$2_Error, FSharpResult$2_Ok } from '../../../node_modules/@fable-org/fable-library-js/Result.js';
18
18
  import { decodeCell, encodeCell } from './CellTable.js';
19
- import { item, fold, fill, setItem, iterateIndexed } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
20
- import { decodeString, encodeString } from '../StringTable.js';
19
+ import { iterateIndexed, fold, setItem, fill, item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
20
+ import { encodeString, decodeString } from '../StringTable.js';
21
21
 
22
22
  function encoder(table) {
23
23
  const valueMap = table.Values.ValueMap;
24
- const cellEncoder = (hash) => encoder$2(getItemFromDict(valueMap, hash));
24
+ const cellEncoder = (hash) => encoder$1(getItemFromDict(valueMap, hash));
25
25
  const values = toList(delay(() => {
26
26
  let value;
27
27
  return append(singleton(["name", (value = table.Name, {
28
28
  Encode(helpers) {
29
29
  return helpers.encodeString(value);
30
30
  }
31
- })]), delay(() => append(table.Headers.length !== 0 ? singleton(["headers", list$1(toList(delay(() => map$1(encoder$1, table.Headers))))]) : empty$2(), delay(() => table.Values.RowCount !== 0 ? append(singleton(["columns", intDictionary((col) => {
31
+ })]), delay(() => append(table.Headers.length !== 0 ? singleton(["headers", list(toList(delay(() => map(encoder$2, table.Headers))))]) : empty(), delay(() => table.Values.RowCount !== 0 ? append(singleton(["columns", intDictionary((col) => {
32
32
  if (col.tag === /* Sparse */
33
33
  1) {
34
34
  return intDictionary(cellEncoder, col.fields[0]);
@@ -42,11 +42,11 @@ function encoder(table) {
42
42
  return helpers_1.encodeSignedIntegralNumber(value_1);
43
43
  }
44
44
  })]);
45
- })) : empty$2()))));
45
+ })) : empty()))));
46
46
  }));
47
47
  return {
48
48
  Encode(helpers_2) {
49
- const arg = map$1((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_2)], values);
49
+ const arg = map((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_2)], values);
50
50
  return helpers_2.encodeObject(arg);
51
51
  }
52
52
  };
@@ -54,9 +54,9 @@ function encoder(table) {
54
54
  const decoderV2Deprecated = object((get$) => {
55
55
  let arg_1, objectArg, arg_3, objectArg_1, objectArg_2;
56
56
  let decodedHeader;
57
- const collection = defaultArg((arg_1 = list(decoder$2), objectArg = get$.Optional, objectArg.Field("header", arg_1)), empty());
57
+ const collection = defaultArg((arg_1 = list$1(decoder$1), objectArg = get$.Optional, objectArg.Field("header", arg_1)), empty$1());
58
58
  decodedHeader = Array.from(collection);
59
- const decodedValues = new Dictionary(defaultArg((arg_3 = map$0027(tuple2(int, int), decoder$1), objectArg_1 = get$.Optional, objectArg_1.Field("values", arg_3)), empty$1({
59
+ const decodedValues = new Dictionary(defaultArg((arg_3 = map$0027(tuple2(int, int), decoder$2), objectArg_1 = get$.Optional, objectArg_1.Field("values", arg_3)), empty$2({
60
60
  Compare: compareArrays
61
61
  })), {
62
62
  Equals: equalArrays,
@@ -76,11 +76,11 @@ const decoderV2Deprecated = object((get$) => {
76
76
  });
77
77
  const decoder = (() => {
78
78
  const valueMap = /* @__PURE__ */ new Map([]);
79
- const cellDecoder = map((cell) => ensureCellHashInValueMap(cell, valueMap), decoder$1);
80
- const columnDecoder = Decode_tryOneOf(ofArray([map(ColumnValueRefs_Constant, cellDecoder), map(ColumnValueRefs_Sparse, Decode_intDictionary(cellDecoder))]));
79
+ const cellDecoder = map$1((cell) => ensureCellHashInValueMap(cell, valueMap), decoder$2);
80
+ const columnDecoder = Decode_tryOneOf(ofArray([map$1(ColumnValueRefs_Constant, cellDecoder), map$1(ColumnValueRefs_Sparse, Decode_intDictionary(cellDecoder))]));
81
81
  const decoder_1 = object((get$) => {
82
82
  let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, objectArg_3;
83
- const decodedHeader = defaultArg((arg_1 = resizeArray(decoder$2), objectArg = get$.Optional, objectArg.Field("headers", arg_1)), []);
83
+ const decodedHeader = defaultArg((arg_1 = resizeArray(decoder$1), objectArg = get$.Optional, objectArg.Field("headers", arg_1)), []);
84
84
  const values = new ArcTableValues(defaultArg((arg_3 = Decode_dictionary(int, columnDecoder), objectArg_1 = get$.Optional, objectArg_1.Field("columns", arg_3)), /* @__PURE__ */ new Map([])), valueMap, defaultArg((objectArg_2 = get$.Optional, objectArg_2.Field("rowCount", int)), 0));
85
85
  return ArcTable.fromArcTableValues((objectArg_3 = get$.Required, objectArg_3.Field("name", string)), decodedHeader, values);
86
86
  });
@@ -96,7 +96,7 @@ function decoderCompressedColumn(cellTable, table, columnIndex) {
96
96
  const matchValue = array(decodeCell(cellTable)).Decode(helper, column);
97
97
  if (matchValue.tag === /* Error */
98
98
  1) {
99
- matchValue.fields[0];
99
+ const err = matchValue.fields[0];
100
100
  const rangeDecoder = object((get$) => {
101
101
  let from;
102
102
  const objectArg = get$.Required;
@@ -157,7 +157,7 @@ function arrayi(decoderi) {
157
157
  }
158
158
  function encoderCompressed(stringTable, oaTable, cellTable, table) {
159
159
  const cellEncoder = (hash) => encodeCell(cellTable, getItemFromDict(table.Values.ValueMap, hash));
160
- const values = toList(delay(() => append(singleton(["n", encodeString(stringTable, table.Name)]), delay(() => append(table.Headers.length !== 0 ? singleton(["h", list$1(toList(delay(() => map$1(encoder$1, table.Headers))))]) : empty$2(), delay(() => table.Values.RowCount !== 0 ? append(singleton(["c", intDictionary((col) => {
160
+ const values = toList(delay(() => append(singleton(["n", encodeString(stringTable, table.Name)]), delay(() => append(table.Headers.length !== 0 ? singleton(["h", list(toList(delay(() => map(encoder$2, table.Headers))))]) : empty(), delay(() => table.Values.RowCount !== 0 ? append(singleton(["c", intDictionary((col) => {
161
161
  if (col.tag === /* Sparse */
162
162
  1) {
163
163
  return intDictionary(cellEncoder, col.fields[0]);
@@ -171,10 +171,10 @@ function encoderCompressed(stringTable, oaTable, cellTable, table) {
171
171
  return helpers.encodeSignedIntegralNumber(value);
172
172
  }
173
173
  })]);
174
- })) : empty$2()))))));
174
+ })) : empty()))))));
175
175
  return {
176
176
  Encode(helpers_1) {
177
- const arg = map$1((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_1)], values);
177
+ const arg = map((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_1)], values);
178
178
  return helpers_1.encodeObject(arg);
179
179
  }
180
180
  };
@@ -183,7 +183,7 @@ function decoderCompressedV2Deprecated(stringTable, oaTable, cellTable) {
183
183
  return object((get$) => {
184
184
  let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2;
185
185
  let decodedHeader;
186
- const collection = defaultArg((arg_1 = list(decoder$2), objectArg = get$.Optional, objectArg.Field("h", arg_1)), empty());
186
+ const collection = defaultArg((arg_1 = list$1(decoder$1), objectArg = get$.Optional, objectArg.Field("h", arg_1)), empty$1());
187
187
  decodedHeader = Array.from(collection);
188
188
  const table = ArcTable.create((arg_3 = decodeString(stringTable), objectArg_1 = get$.Required, objectArg_1.Field("n", arg_3)), decodedHeader, []);
189
189
  arg_5 = arrayi((columnIndex) => decoderCompressedColumn(cellTable, table, columnIndex)), objectArg_2 = get$.Optional, objectArg_2.Field("c", arg_5);
@@ -192,11 +192,11 @@ function decoderCompressedV2Deprecated(stringTable, oaTable, cellTable) {
192
192
  }
193
193
  function decoderCompressed(stringTable, oaTable, cellTable) {
194
194
  const valueMap = /* @__PURE__ */ new Map([]);
195
- const cellDecoder = map((i) => ensureCellHashInValueMap(item(i, cellTable), valueMap), int);
196
- const columnDecoder = Decode_tryOneOf(ofArray([map(ColumnValueRefs_Constant, cellDecoder), map(ColumnValueRefs_Sparse, Decode_intDictionary(cellDecoder))]));
195
+ const cellDecoder = map$1((i) => ensureCellHashInValueMap(item(i, cellTable), valueMap), int);
196
+ const columnDecoder = Decode_tryOneOf(ofArray([map$1(ColumnValueRefs_Constant, cellDecoder), map$1(ColumnValueRefs_Sparse, Decode_intDictionary(cellDecoder))]));
197
197
  const decoder_1 = object((get$) => {
198
198
  let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, arg_7, objectArg_3;
199
- const decodedHeader = defaultArg((arg_1 = resizeArray(decoder$2), objectArg = get$.Optional, objectArg.Field("h", arg_1)), []);
199
+ const decodedHeader = defaultArg((arg_1 = resizeArray(decoder$1), objectArg = get$.Optional, objectArg.Field("h", arg_1)), []);
200
200
  const values = new ArcTableValues(defaultArg((arg_3 = Decode_dictionary(int, columnDecoder), objectArg_1 = get$.Optional, objectArg_1.Field("c", arg_3)), /* @__PURE__ */ new Map([])), valueMap, defaultArg((objectArg_2 = get$.Optional, objectArg_2.Field("r", int)), 0));
201
201
  return ArcTable.fromArcTableValues((arg_7 = decodeString(stringTable), objectArg_3 = get$.Required, objectArg_3.Field("n", arg_7)), decodedHeader, values);
202
202
  });
@@ -1,22 +1,22 @@
1
- import { toArray, map as map$1, sortBy } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
1
+ import { toArray, map, sortBy } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
2
2
  import { Dictionary_items, Dictionary_tryFind } from '../../Core/Helper/Collections.js';
3
3
  import { comparePrimitives } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
4
- import { map, item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
5
- import { decoderCompressed, encoderCompressed } from './CompositeCell.js';
4
+ import { map as map$1, item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
5
+ import { encoderCompressed, decoderCompressed } from './CompositeCell.js';
6
6
  import { array, object, int } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
7
7
  import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
8
8
  import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
9
9
 
10
10
  function arrayFromMap(otm) {
11
- return toArray(map$1((kv_1) => kv_1[0], sortBy((kv) => kv[1], Dictionary_items(otm), {
11
+ return toArray(map((kv_1) => kv_1[0], sortBy((kv) => kv[1], Dictionary_items(otm), {
12
12
  Compare: comparePrimitives
13
13
  })));
14
14
  }
15
15
  function encoder(stringTable, oaTable, ot) {
16
- const values = map((cc) => encoderCompressed(stringTable, oaTable, cc), ot);
16
+ const values = map$1((cc) => encoderCompressed(stringTable, oaTable, cc), ot);
17
17
  return {
18
18
  Encode(helpers) {
19
- const arg = map((v) => v.Encode(helpers), values);
19
+ const arg = map$1((v) => v.Encode(helpers), values);
20
20
  return helpers.encodeArray(arg);
21
21
  }
22
22
  };
@@ -1,13 +1,13 @@
1
- import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from '../OntologyAnnotation.js';
1
+ import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from '../OntologyAnnotation.js';
2
2
  import { singleton, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
3
- import { compressedDecoder, compressedEncoder, decoder as decoder$1, encoder as encoder$1 } from '../Data.js';
3
+ import { encoder as encoder$1, decoder as decoder$1, compressedEncoder, compressedDecoder } from '../Data.js';
4
4
  import { list } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
5
5
  import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
6
6
  import { CompositeCell_FreeText, CompositeCell_Term, CompositeCell_Unitized, CompositeCell_Data } from '../../Core/Table/CompositeCell.js';
7
7
  import { object, string, index } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
8
8
  import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
9
- import { decodeOA, encodeOA } from './OATable.js';
10
- import { decodeString, encodeString } from '../StringTable.js';
9
+ import { encodeOA, decodeOA } from './OATable.js';
10
+ import { encodeString, decodeString } from '../StringTable.js';
11
11
 
12
12
  function encoder(cc) {
13
13
  const oaToJsonString = OntologyAnnotation_encoder;
@@ -1,6 +1,6 @@
1
- import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from '../OntologyAnnotation.js';
1
+ import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from '../OntologyAnnotation.js';
2
2
  import { empty, singleton } from '../../../node_modules/@fable-org/fable-library-js/List.js';
3
- import { decoder as decoder$1, encoder as encoder$1 } from './IOType.js';
3
+ import { encoder as encoder$1, decoder as decoder$1 } from './IOType.js';
4
4
  import { list } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
5
5
  import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
6
6
  import { CompositeHeader_Characteristic, CompositeHeader_Parameter, CompositeHeader_Component, CompositeHeader_Factor, CompositeHeader_Input, CompositeHeader_Output, CompositeHeader_ProtocolType, CompositeHeader_ProtocolREF, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolVersion, CompositeHeader_Performer, CompositeHeader_Date, CompositeHeader_Comment, CompositeHeader_FreeText } from '../../Core/Table/CompositeHeader.js';
@@ -1,6 +1,6 @@
1
1
  import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
2
2
  import { IOType } from '../../Core/Table/CompositeHeader.js';
3
- import { andThen, string, succeed } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
3
+ import { andThen, succeed, string } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
4
4
 
5
5
  function encoder(io) {
6
6
  const value = toString(io);
@@ -1,22 +1,22 @@
1
- import { toArray, map as map$1, sortBy } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
2
- import { Dictionary_tryFind, Dictionary_items } from '../../Core/Helper/Collections.js';
1
+ import { toArray, map, sortBy } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
2
+ import { Dictionary_items, Dictionary_tryFind } from '../../Core/Helper/Collections.js';
3
3
  import { comparePrimitives } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
4
- import { map, item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
5
- import { OntologyAnnotation_compressedDecoder, OntologyAnnotation_compressedEncoder } from '../OntologyAnnotation.js';
4
+ import { map as map$1, item } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
5
+ import { OntologyAnnotation_compressedEncoder, OntologyAnnotation_compressedDecoder } from '../OntologyAnnotation.js';
6
6
  import { array, object, int } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
7
7
  import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
8
8
  import { addToDict } from '../../../node_modules/@fable-org/fable-library-js/MapUtil.js';
9
9
 
10
10
  function arrayFromMap(otm) {
11
- return toArray(map$1((kv_1) => kv_1[0], sortBy((kv) => kv[1], Dictionary_items(otm), {
11
+ return toArray(map((kv_1) => kv_1[0], sortBy((kv) => kv[1], Dictionary_items(otm), {
12
12
  Compare: comparePrimitives
13
13
  })));
14
14
  }
15
15
  function encoder(stringTable, ot) {
16
- const values = map((oa) => OntologyAnnotation_compressedEncoder(stringTable, oa), ot);
16
+ const values = map$1((oa) => OntologyAnnotation_compressedEncoder(stringTable, oa), ot);
17
17
  return {
18
18
  Encode(helpers) {
19
- const arg = map((v) => v.Encode(helpers), values);
19
+ const arg = map$1((v) => v.Encode(helpers), values);
20
20
  return helpers.encodeArray(arg);
21
21
  }
22
22
  };
@@ -1,15 +1,101 @@
1
- import { Template, Organisation } from '../../Core/Template.js';
2
- import { object, guid, string, andThen, resizeArray, succeed } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
3
- import { decoder } from './ArcTable.js';
1
+ import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
2
+ import { Organisation, Template } from '../../Core/Template.js';
3
+ import { andThen, succeed, string, object, guid, resizeArray, datetimeUtc, array } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
4
+ import { encoder, decoder, encoderCompressed, decoderCompressed } from './ArcTable.js';
5
+ import { seq } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
6
+ import { map } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
7
+ import { encoder as encoder$1, decoder as decoder$1 } from '../Person.js';
8
+ import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from '../OntologyAnnotation.js';
9
+ import { dateTime } from '../Encode.js';
4
10
  import { unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
5
- import { decoder as decoder$1 } from '../Person.js';
6
- import { OntologyAnnotation_decoder } from '../OntologyAnnotation.js';
7
11
  import { Decode_datetime } from '../Decode.js';
12
+ import { toString as toString$1 } from '../../../node_modules/@fable-org/fable-library-js/Date.js';
13
+ import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
8
14
 
15
+ const Template_Organisation_encoder = (arg) => {
16
+ const value = toString(arg);
17
+ return {
18
+ Encode(helpers) {
19
+ return helpers.encodeString(value);
20
+ }
21
+ };
22
+ };
9
23
  const Template_Organisation_decoder = andThen((textValue) => succeed(Organisation.ofString(textValue)), string);
24
+ function Template_encoder(template) {
25
+ let value_1, copyOfStruct, value_3, value_4, value_5;
26
+ const values_3 = [["id", (value_1 = (copyOfStruct = template.Id, copyOfStruct), {
27
+ Encode(helpers) {
28
+ return helpers.encodeString(value_1);
29
+ }
30
+ })], ["table", encoder(template.Table)], ["name", (value_3 = template.Name, {
31
+ Encode(helpers_1) {
32
+ return helpers_1.encodeString(value_3);
33
+ }
34
+ })], ["description", (value_4 = template.Description, {
35
+ Encode(helpers_2) {
36
+ return helpers_2.encodeString(value_4);
37
+ }
38
+ })], ["organisation", Template_Organisation_encoder(template.Organisation)], ["version", (value_5 = template.Version, {
39
+ Encode(helpers_3) {
40
+ return helpers_3.encodeString(value_5);
41
+ }
42
+ })], ["authors", seq(map(encoder$1, template.Authors))], ["endpoint_repositories", seq(map(OntologyAnnotation_encoder, template.EndpointRepositories))], ["tags", seq(map(OntologyAnnotation_encoder, template.Tags))], ["last_updated", dateTime(template.LastUpdated)]];
43
+ return {
44
+ Encode(helpers_4) {
45
+ const arg = map((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_4)], values_3);
46
+ return helpers_4.encodeObject(arg);
47
+ }
48
+ };
49
+ }
10
50
  const Template_decoder = object((get$) => {
11
51
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9;
12
52
  return Template.create((objectArg = get$.Required, objectArg.Field("id", guid)), (objectArg_1 = get$.Required, objectArg_1.Field("table", decoder)), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", Template_Organisation_decoder)), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), unwrap((arg_13 = resizeArray(decoder$1), objectArg_6 = get$.Optional, objectArg_6.Field("authors", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("endpoint_repositories", arg_15))), unwrap((arg_17 = resizeArray(OntologyAnnotation_decoder), objectArg_8 = get$.Optional, objectArg_8.Field("tags", arg_17))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", Decode_datetime)));
13
53
  });
54
+ function Template_encoderCompressed(stringTable, oaTable, cellTable, template) {
55
+ let value_1, copyOfStruct, value_3, value_4, value_5, value_1_1;
56
+ const values_3 = [["id", (value_1 = (copyOfStruct = template.Id, copyOfStruct), {
57
+ Encode(helpers) {
58
+ return helpers.encodeString(value_1);
59
+ }
60
+ })], ["table", encoderCompressed(stringTable, oaTable, cellTable, template.Table)], ["name", (value_3 = template.Name, {
61
+ Encode(helpers_1) {
62
+ return helpers_1.encodeString(value_3);
63
+ }
64
+ })], ["description", (value_4 = template.Description, {
65
+ Encode(helpers_2) {
66
+ return helpers_2.encodeString(value_4);
67
+ }
68
+ })], ["organisation", Template_Organisation_encoder(template.Organisation)], ["version", (value_5 = template.Version, {
69
+ Encode(helpers_3) {
70
+ return helpers_3.encodeString(value_5);
71
+ }
72
+ })], ["authors", seq(map(encoder$1, template.Authors))], ["endpoint_repositories", seq(map(OntologyAnnotation_encoder, template.EndpointRepositories))], ["tags", seq(map(OntologyAnnotation_encoder, template.Tags))], ["last_updated", (value_1_1 = toString$1(template.LastUpdated, "O", {}), {
73
+ Encode(helpers_4) {
74
+ return helpers_4.encodeString(value_1_1);
75
+ }
76
+ })]];
77
+ return {
78
+ Encode(helpers_5) {
79
+ const arg = map((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_5)], values_3);
80
+ return helpers_5.encodeObject(arg);
81
+ }
82
+ };
83
+ }
84
+ function Template_decoderCompressed(stringTable, oaTable, cellTable) {
85
+ return object((get$) => {
86
+ let objectArg, arg_3, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9;
87
+ return Template.create((objectArg = get$.Required, objectArg.Field("id", guid)), (arg_3 = decoderCompressed(stringTable, oaTable, cellTable), objectArg_1 = get$.Required, objectArg_1.Field("table", arg_3)), (objectArg_2 = get$.Required, objectArg_2.Field("name", string)), (objectArg_3 = get$.Required, objectArg_3.Field("description", string)), (objectArg_4 = get$.Required, objectArg_4.Field("organisation", Template_Organisation_decoder)), (objectArg_5 = get$.Required, objectArg_5.Field("version", string)), unwrap((arg_13 = resizeArray(decoder$1), objectArg_6 = get$.Optional, objectArg_6.Field("authors", arg_13))), unwrap((arg_15 = resizeArray(OntologyAnnotation_decoder), objectArg_7 = get$.Optional, objectArg_7.Field("endpoint_repositories", arg_15))), unwrap((arg_17 = resizeArray(OntologyAnnotation_decoder), objectArg_8 = get$.Optional, objectArg_8.Field("tags", arg_17))), (objectArg_9 = get$.Required, objectArg_9.Field("last_updated", datetimeUtc)));
88
+ });
89
+ }
90
+ function Templates_encoder(templates) {
91
+ const values = map$1(Template_encoder, templates);
92
+ return {
93
+ Encode(helpers) {
94
+ const arg = map$1((v) => v.Encode(helpers), values);
95
+ return helpers.encodeArray(arg);
96
+ }
97
+ };
98
+ }
99
+ const Templates_decoder = array(Template_decoder);
14
100
 
15
- export { Template_Organisation_decoder, Template_decoder };
101
+ export { Template_Organisation_decoder, Template_Organisation_encoder, Template_decoder, Template_decoderCompressed, Template_encoder, Template_encoderCompressed, Templates_decoder, Templates_encoder };
@@ -1,15 +1,15 @@
1
1
  import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
2
- import { unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
- import { ArcWorkflow_create_Z3BB02240, ArcWorkflow__get_Identifier, ArcWorkflow__get_WorkflowType, ArcWorkflow__get_Title, ArcWorkflow__get_URI, ArcWorkflow__get_Description, ArcWorkflow__get_Version, ArcWorkflow__get_DataMap, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_Parameters, ArcWorkflow__get_Components, ArcWorkflow__get_Contacts, ArcWorkflow__get_Comments } from '../Core/ArcTypes.js';
2
+ import { map, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
+ import { ArcWorkflow__get_Identifier, ArcWorkflow__get_WorkflowType, ArcWorkflow__get_Title, ArcWorkflow__get_URI, ArcWorkflow__get_Description, ArcWorkflow__get_Version, ArcWorkflow__get_DataMap, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_Parameters, ArcWorkflow__get_Components, ArcWorkflow__get_Contacts, ArcWorkflow__get_Comments, ArcWorkflow_create_Z3BB02240 } from '../Core/ArcTypes.js';
4
4
  import { tryInclude, tryIncludeSeq } from './Encode.js';
5
- import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from './OntologyAnnotation.js';
6
- import { decoder as decoder$3, decoderCompressed as decoderCompressed$1, encoder as encoder$1, encoderCompressed as encoderCompressed$1 } from './DataMap/DataMap.js';
7
- import { decoder as decoder$5, encoder as encoder$2 } from './Process/ProtocolParameter.js';
8
- import { decoder as decoder$4, encoder as encoder$3 } from './Process/Component.js';
9
- import { decoder as decoder$2, encoder as encoder$4 } from './Person.js';
10
- import { decoder as decoder$1, encoder as encoder$5 } from './Comment.js';
5
+ import { OntologyAnnotation_encoder, OntologyAnnotation_decoder } from './OntologyAnnotation.js';
6
+ import { encoder as encoder$1, decoder as decoder$3, encoderCompressed as encoderCompressed$1, decoderCompressed as decoderCompressed$1 } from './DataMap/DataMap.js';
7
+ import { encoder as encoder$2, decoder as decoder$1 } from './Process/ProtocolParameter.js';
8
+ import { encoder as encoder$3, decoder as decoder$2 } from './Process/Component.js';
9
+ import { encoder as encoder$4, decoder as decoder$4 } from './Person.js';
10
+ import { encoder as encoder$5, decoder as decoder$5 } from './Comment.js';
11
11
  import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
12
- import { object, resizeArray, string } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
12
+ import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
13
13
 
14
14
  function encoder(workflow) {
15
15
  let value;
@@ -47,7 +47,7 @@ function encoder(workflow) {
47
47
  }
48
48
  const decoder = object((get$) => {
49
49
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
50
- return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$5), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", decoder$3))), unwrap((arg_21 = resizeArray(decoder$2), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$1), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
50
+ return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$2), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", decoder$3))), unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
51
51
  });
52
52
  function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
53
53
  let value;
@@ -86,7 +86,7 @@ function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
86
86
  function decoderCompressed(stringTable, oaTable, cellTable) {
87
87
  return object((get$) => {
88
88
  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
89
- return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$5), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((arg_19 = decoderCompressed$1(), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(decoder$2), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$1), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
89
+ return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$2), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((arg_19 = decoderCompressed$1(stringTable, oaTable, cellTable), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$5), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
90
90
  });
91
91
  }
92
92