@nfdi4plants/arctrl 1.1.0 → 2.0.0-alpha.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/ARC.js +53 -35
- package/{Contracts/Contracts.ARCtrl.js → Contract/ARC.js} +4 -2
- package/Contract/ArcAssay.js +102 -0
- package/Contract/ArcInvestigation.js +78 -0
- package/Contract/ArcStudy.js +102 -0
- package/Contract/Contract.js +3 -3
- package/{Contracts/Contracts.Git.js → Contract/Git.js} +5 -5
- package/{ISA/ISA/ArcTypes → Core}/ArcTypes.js +307 -295
- package/Core/Comment.js +97 -0
- package/{ISA/ISA/JsonTypes → Core}/CommentList.js +12 -18
- package/Core/Conversion.js +1056 -0
- package/Core/Helper/Collections.js +318 -0
- package/Core/Helper/HashCodes.js +39 -0
- package/{ISA/ISA → Core/Helper}/Identifier.js +67 -2
- package/{ISA/ISA → Core/Helper}/Regex.js +3 -3
- package/{SemVer.js → Core/Helper/SemVer.js} +8 -8
- package/{ISA/ISA/ArcTypes → Core}/IdentifierSetters.js +1 -1
- package/Core/OntologyAnnotation.js +186 -0
- package/Core/OntologySourceReference.js +92 -0
- package/Core/Person.js +194 -0
- package/Core/Process/ColumnIndex.js +248 -0
- package/Core/Process/Component.js +188 -0
- package/{ISA/ISA/JsonTypes → Core/Process}/Data.js +8 -8
- package/{ISA/ISA/JsonTypes → Core/Process}/DataFile.js +3 -3
- package/Core/Process/Factor.js +109 -0
- package/{ISA/ISA/JsonTypes → Core/Process}/FactorValue.js +32 -13
- package/{ISA/ISA/JsonTypes → Core/Process}/Material.js +9 -9
- package/{ISA/ISA/JsonTypes → Core/Process}/MaterialAttribute.js +17 -17
- package/{ISA/ISA/JsonTypes → Core/Process}/MaterialAttributeValue.js +35 -16
- package/{ISA/ISA/JsonTypes → Core/Process}/MaterialType.js +3 -3
- package/{ISA/ISA/JsonTypes → Core/Process}/Process.js +46 -79
- package/{ISA/ISA/JsonTypes → Core/Process}/ProcessInput.js +42 -42
- package/{ISA/ISA/JsonTypes → Core/Process}/ProcessOutput.js +36 -36
- package/{ISA/ISA/JsonTypes → Core/Process}/ProcessParameterValue.js +26 -7
- package/{ISA/ISA/JsonTypes → Core/Process}/ProcessSequence.js +21 -25
- package/{ISA/ISA/JsonTypes → Core/Process}/Protocol.js +26 -57
- package/{ISA/ISA/JsonTypes → Core/Process}/ProtocolParameter.js +10 -10
- package/{ISA/ISA/JsonTypes → Core/Process}/Sample.js +12 -12
- package/{ISA/ISA/JsonTypes → Core/Process}/Source.js +9 -9
- package/{ISA/ISA/JsonTypes → Core/Process}/Value.js +24 -31
- package/Core/Publication.js +116 -0
- package/{ISA/ISA/ArcTypes → Core/Table}/ArcTable.js +49 -155
- package/Core/Table/ArcTableAux.js +532 -0
- package/{ISA/ISA/ArcTypes → Core/Table}/ArcTables.js +20 -32
- package/{ISA/ISA/ArcTypes → Core/Table}/CompositeCell.js +19 -76
- package/{ISA/ISA/ArcTypes → Core/Table}/CompositeColumn.js +9 -8
- package/{ISA/ISA/ArcTypes → Core/Table}/CompositeHeader.js +14 -34
- package/{Templates → Core}/Template.js +16 -17
- package/Core/Templates.js +84 -0
- package/FileSystem/Commit.js +2 -2
- package/FileSystem/FileSystem.js +4 -4
- package/FileSystem/FileSystemTree.js +46 -8
- package/FileSystem/Path.js +10 -2
- package/Json/ARC.js +25 -0
- package/Json/Assay.js +202 -0
- package/Json/Comment.js +130 -0
- package/Json/ConverterOptions.js +18 -0
- package/Json/Decode.js +128 -0
- package/Json/Encode.js +45 -0
- package/Json/Investigation.js +220 -0
- package/Json/OntologyAnnotation.js +169 -0
- package/Json/OntologySourceReference.js +122 -0
- package/Json/Person.js +250 -0
- package/Json/Process/AssayMaterials.js +22 -0
- package/Json/Process/Component.js +79 -0
- package/Json/Process/Data.js +102 -0
- package/Json/Process/DataFile.js +81 -0
- package/Json/Process/Factor.js +48 -0
- package/Json/Process/FactorValue.js +53 -0
- package/Json/Process/Material.js +107 -0
- package/Json/Process/MaterialAttribute.js +45 -0
- package/Json/Process/MaterialAttributeValue.js +70 -0
- package/Json/Process/MaterialType.js +60 -0
- package/Json/Process/Process.js +107 -0
- package/Json/Process/ProcessInput.js +59 -0
- package/Json/Process/ProcessOutput.js +71 -0
- package/Json/Process/ProcessParameterValue.js +69 -0
- package/Json/Process/ProcessSequence.js +53 -0
- package/Json/Process/PropertyValue.js +82 -0
- package/Json/Process/Protocol.js +147 -0
- package/Json/Process/ProtocolParameter.js +45 -0
- package/Json/Process/Sample.js +134 -0
- package/Json/Process/Source.js +101 -0
- package/Json/Process/StudyMaterials.js +24 -0
- package/Json/Process/Value.js +42 -0
- package/Json/Publication.js +142 -0
- package/Json/StringTable.js +44 -0
- package/Json/Study.js +306 -0
- package/Json/Table/ArcTable.js +223 -0
- package/Json/Table/CellTable.js +40 -0
- package/Json/Table/CompositeCell.js +65 -0
- package/Json/Table/CompositeHeader.js +57 -0
- package/Json/Table/Compression.js +38 -0
- package/Json/Table/IOType.js +37 -0
- package/Json/Table/OATable.js +40 -0
- package/Json/Table/Templates.js +107 -0
- package/Json/context/rocrate/isa_assay_context.js +32 -0
- package/Json/context/rocrate/isa_comment_context.js +23 -0
- package/Json/context/rocrate/isa_component_context.js +24 -0
- package/Json/context/rocrate/isa_data_context.js +25 -0
- package/Json/context/rocrate/isa_factor_context.js +25 -0
- package/Json/context/rocrate/isa_factor_value_context.js +23 -0
- package/Json/context/rocrate/isa_investigation_context.js +33 -0
- package/Json/context/rocrate/isa_material_attribute_context.js +23 -0
- package/Json/context/rocrate/isa_material_attribute_value_context.js +23 -0
- package/Json/context/rocrate/isa_material_context.js +26 -0
- package/Json/context/rocrate/isa_ontology_annotation_context.js +23 -0
- package/Json/context/rocrate/isa_ontology_source_reference_context.js +26 -0
- package/Json/context/rocrate/isa_organization_context.js +22 -0
- package/Json/context/rocrate/isa_person_context.js +33 -0
- package/Json/context/rocrate/isa_process_context.js +29 -0
- package/Json/context/rocrate/isa_process_parameter_value_context.js +23 -0
- package/Json/context/rocrate/isa_protocol_context.js +28 -0
- package/Json/context/rocrate/isa_protocol_parameter_context.js +23 -0
- package/Json/context/rocrate/isa_publication_context.js +25 -0
- package/Json/context/rocrate/isa_sample_context.js +24 -0
- package/Json/context/rocrate/isa_source_context.js +25 -0
- package/Json/context/rocrate/isa_study_context.js +40 -0
- package/Json/context/rocrate/property_value_context.js +4 -0
- package/Json/context/rocrate/rocrate_context.js +23 -0
- package/Json.js +193 -0
- package/README.md +50 -12
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/AnnotationTable/ArcTable.js +12 -12
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/AnnotationTable/CompositeCell.js +8 -7
- package/Spreadsheet/AnnotationTable/CompositeColumn.js +59 -0
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/AnnotationTable/CompositeHeader.js +10 -10
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/ArcAssay.js +11 -11
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/ArcInvestigation.js +34 -37
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/ArcStudy.js +12 -12
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/CollectionAux.js +8 -8
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Assays.js +32 -32
- package/Spreadsheet/Metadata/Comment.js +71 -0
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Contacts.js +28 -30
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Conversions.js +22 -16
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/DesignDescriptors.js +1 -1
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Factors.js +23 -22
- package/Spreadsheet/Metadata/OntologyAnnotation.js +64 -0
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/OntologySourceReference.js +22 -24
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Protocols.js +17 -17
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Publication.js +29 -31
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/SparseTable.js +34 -28
- package/{ISA/ISA.Spreadsheet → Spreadsheet}/Metadata/Study.js +38 -40
- package/{Templates/Template.Spreadsheet.js → Spreadsheet/Template.js} +31 -31
- package/Template.Web.js +27 -0
- package/WebRequest/WebRequest.Node.js +15 -0
- package/WebRequest/WebRequest.js +10 -29
- package/Xlsx.js +85 -0
- package/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +7 -7
- package/fable_modules/Fable.Promise.2.2.2/Promise.fs.js +3 -3
- package/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +8 -8
- package/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +2 -2
- package/fable_modules/FsSpreadsheet.5.1.3/Cells/FsCell.fs.js +14 -14
- package/fable_modules/FsSpreadsheet.5.1.3/Cells/FsCellsCollection.fs.js +6 -6
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/CellBuilder.fs.js +4 -4
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/ColumnBuilder.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/DSL.fs.js +2 -2
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/Expression.fs.js +1 -1
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/RowBuilder.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/SheetBuilder.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/TableBuilder.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/Transform.fs.js +6 -6
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/Types.fs.js +4 -4
- package/fable_modules/FsSpreadsheet.5.1.3/DSL/WorkbookBuilder.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/FsAddress.fs.js +8 -8
- package/fable_modules/FsSpreadsheet.5.1.3/FsColumn.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/FsRow.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/FsWorkbook.fs.js +6 -6
- package/fable_modules/FsSpreadsheet.5.1.3/FsWorksheet.fs.js +9 -9
- package/fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRange.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRangeAddress.fs.js +4 -3
- package/fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRangeBase.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRangeColumn.fs.js +3 -3
- package/fable_modules/FsSpreadsheet.5.1.3/Ranges/FsRangeRow.fs.js +1 -1
- package/fable_modules/FsSpreadsheet.5.1.3/SheetBuilder.fs.js +8 -8
- package/fable_modules/FsSpreadsheet.5.1.3/Tables/FsTable.fs.js +7 -7
- package/fable_modules/FsSpreadsheet.5.1.3/Tables/FsTableField.fs.js +4 -4
- package/fable_modules/FsSpreadsheet.5.1.3/Tables/FsTableRow.fs.js +1 -1
- package/fable_modules/Thoth.Json.Core.0.2.1/Decode.fs +1390 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js +1230 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Encode.fs +233 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js +113 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Thoth.Json.Core.fableproj +28 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Types.fs +76 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js +33 -0
- package/fable_modules/Thoth.Json.Core.0.2.1/obj/Debug/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +3 -0
- package/fable_modules/{Thoth.Json.10.1.0/obj/Release/netstandard2.0/Thoth.Json.AssemblyInfo.fs → Thoth.Json.Core.0.2.1/obj/Debug/netstandard2.0/Thoth.Json.Core.AssemblyInfo.fs} +8 -7
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs +79 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js +85 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs +32 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js +45 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/Thoth.Json.JavaScript.fableproj +21 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/obj/Debug/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +3 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/obj/Debug/netstandard2.0/Thoth.Json.JavaScript.AssemblyInfo.fs +18 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/obj/Release/netstandard2.0/.NETStandard,Version=v2.0.AssemblyAttributes.fs +3 -0
- package/fable_modules/Thoth.Json.JavaScript.0.1.0/obj/Release/netstandard2.0/Thoth.Json.JavaScript.AssemblyInfo.fs +19 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Array.d.ts +4 -1
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Array.js +124 -86
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Boolean.js +2 -2
- package/fable_modules/fable-library-js.4.16.0/CHANGELOG.md +47 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Choice.d.ts +0 -17
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Choice.js +0 -43
- package/fable_modules/fable-library-js.4.16.0/ConditionalWeakTable.d.ts +9 -0
- package/fable_modules/fable-library-js.4.16.0/ConditionalWeakTable.js +21 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Date.js +340 -42
- package/fable_modules/fable-library-js.4.16.0/FSharp.Core.CompilerServices.d.ts +12 -0
- package/fable_modules/fable-library-js.4.16.0/FSharp.Core.CompilerServices.js +27 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/List.js +3 -3
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Map.js +3 -3
- package/fable_modules/fable-library-js.4.16.0/MapUtil.d.ts +12 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/MapUtil.js +15 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/MutableMap.js +2 -1
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/MutableSet.js +2 -1
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Random.js +7 -7
- package/fable_modules/fable-library-js.4.16.0/Result.d.ts +37 -0
- package/fable_modules/fable-library-js.4.16.0/Result.js +165 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Set.js +2 -2
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/String.d.ts +1 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/String.js +8 -5
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/System.Collections.Generic.d.ts +15 -7
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/System.Collections.Generic.js +46 -36
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/System.Text.d.ts +9 -1
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/System.Text.js +60 -8
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Util.d.ts +6 -3
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Util.js +2 -13
- package/fable_modules/fable-library-js.4.16.0/big.d.ts +338 -0
- package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/package.json +4 -3
- package/fable_modules/project_cracked.json +1 -1
- package/index.js +14 -12
- package/package.json +1 -1
- package/Contracts/Contracts.ArcTypes.js +0 -268
- package/FileSystemTree.js +0 -51
- package/ISA/ISA/ArcTypes/ArcTableAux.js +0 -1155
- package/ISA/ISA/ArcTypes/CompositeRow.js +0 -111
- package/ISA/ISA/Builder/Types.js +0 -243
- package/ISA/ISA/Fable.js +0 -123
- package/ISA/ISA/Helper.js +0 -503
- package/ISA/ISA/JsonTypes/Assay.js +0 -620
- package/ISA/ISA/JsonTypes/AssayMaterials.js +0 -39
- package/ISA/ISA/JsonTypes/ColumnIndex.js +0 -246
- package/ISA/ISA/JsonTypes/Comment.js +0 -58
- package/ISA/ISA/JsonTypes/Component.js +0 -165
- package/ISA/ISA/JsonTypes/Factor.js +0 -128
- package/ISA/ISA/JsonTypes/Investigation.js +0 -204
- package/ISA/ISA/JsonTypes/OntologyAnnotation.js +0 -196
- package/ISA/ISA/JsonTypes/OntologySourceReference.js +0 -85
- package/ISA/ISA/JsonTypes/Person.js +0 -137
- package/ISA/ISA/JsonTypes/Publication.js +0 -105
- package/ISA/ISA/JsonTypes/Study.js +0 -942
- package/ISA/ISA/JsonTypes/StudyMaterials.js +0 -45
- package/ISA/ISA/UIHelper.js +0 -19
- package/ISA/ISA.Json/ArcTypes/ArcAssay.js +0 -282
- package/ISA/ISA.Json/ArcTypes/ArcInvestigation.js +0 -93
- package/ISA/ISA.Json/ArcTypes/ArcStudy.js +0 -170
- package/ISA/ISA.Json/ArcTypes/ArcTable.js +0 -178
- package/ISA/ISA.Json/ArcTypes/CellTable.js +0 -46
- package/ISA/ISA.Json/ArcTypes/CompositeCell.js +0 -77
- package/ISA/ISA.Json/ArcTypes/CompositeHeader.js +0 -82
- package/ISA/ISA.Json/ArcTypes/IOType.js +0 -35
- package/ISA/ISA.Json/ArcTypes/OATable.js +0 -48
- package/ISA/ISA.Json/Assay.js +0 -105
- package/ISA/ISA.Json/Comment.js +0 -84
- package/ISA/ISA.Json/ConverterOptions.js +0 -33
- package/ISA/ISA.Json/Data.js +0 -271
- package/ISA/ISA.Json/Decode.js +0 -46
- package/ISA/ISA.Json/Factor.js +0 -194
- package/ISA/ISA.Json/GEncode.js +0 -15
- package/ISA/ISA.Json/Investigation.js +0 -114
- package/ISA/ISA.Json/Material.js +0 -233
- package/ISA/ISA.Json/Ontology.js +0 -223
- package/ISA/ISA.Json/Person.js +0 -204
- package/ISA/ISA.Json/Process.js +0 -291
- package/ISA/ISA.Json/Protocol.js +0 -242
- package/ISA/ISA.Json/Publication.js +0 -92
- package/ISA/ISA.Json/StringTable.js +0 -43
- package/ISA/ISA.Json/Study.js +0 -212
- package/ISA/ISA.Json/Validation/Fable.js +0 -69
- package/ISA/ISA.Json/Validation/JsonSchemaValidation.js +0 -88
- package/ISA/ISA.Json/Validation/ValidationResult.js +0 -45
- package/ISA/ISA.Spreadsheet/AnnotationTable/CompositeColumn.js +0 -59
- package/ISA/ISA.Spreadsheet/Metadata/Comment.js +0 -60
- package/ISA/ISA.Spreadsheet/Metadata/OntologyAnnotation.js +0 -65
- package/Path.js +0 -10
- package/Templates/Template.Json.js +0 -83
- package/Templates/Template.Web.js +0 -27
- package/Templates/Templates.js +0 -82
- package/fable_modules/Thoth.Json.10.1.0/Decode.fs +0 -1366
- package/fable_modules/Thoth.Json.10.1.0/Decode.fs.js +0 -1798
- package/fable_modules/Thoth.Json.10.1.0/Encode.fs +0 -621
- package/fable_modules/Thoth.Json.10.1.0/Encode.fs.js +0 -472
- package/fable_modules/Thoth.Json.10.1.0/Extra.fs +0 -31
- package/fable_modules/Thoth.Json.10.1.0/Extra.fs.js +0 -8
- package/fable_modules/Thoth.Json.10.1.0/Thoth.Json.fableproj +0 -30
- package/fable_modules/Thoth.Json.10.1.0/Types.fs +0 -59
- package/fable_modules/Thoth.Json.10.1.0/Types.fs.js +0 -98
- package/fable_modules/Thoth.Json.10.1.0/package.json +0 -5
- package/fable_modules/fable-library.4.5.0/CHANGELOG.md +0 -11
- package/fable_modules/fable-library.4.5.0/MapUtil.d.ts +0 -10
- /package/{ISA/ISA/JsonTypes → Core}/URI.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Async.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Async.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/AsyncBuilder.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/AsyncBuilder.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/BigInt.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/BigInt.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/BitConverter.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/BitConverter.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Boolean.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Char.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Char.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Date.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/DateOffset.d.ts +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/DateOffset.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/DateOnly.d.ts +0 -0
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- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Native.js +0 -0
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- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Observable.js +0 -0
- /package/fable_modules/{fable-library.4.5.0 → fable-library-js.4.16.0}/Option.d.ts +0 -0
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package/ISA/ISA.Json/Person.js
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import { tryPick } from "../../fable_modules/fable-library.4.5.0/Array.js";
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import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
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import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
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import { Person } from "../ISA/JsonTypes/Person.js";
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import { toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
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import { choose } from "../../fable_modules/fable-library.4.5.0/List.js";
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import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
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import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
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import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
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import { tryInclude } from "./GEncode.js";
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import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
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import { decoder as decoder_3, encoder as encoder_1 } from "./Comment.js";
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import { array as array_1, string, object as object_23 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
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import { fromJsonString as fromJsonString_1, uri } from "./Decode.js";
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export function genID(p) {
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const matchValue = p.ID;
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if (matchValue == null) {
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let orcid;
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const matchValue_1 = p.Comments;
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orcid = ((matchValue_1 == null) ? void 0 : tryPick((c) => {
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const matchValue_2 = c.Name;
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const matchValue_3 = c.Value;
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let matchResult, n, v;
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matchResult = 0;
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n = matchValue_2;
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v = matchValue_3;
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}
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}
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}
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switch (matchResult) {
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case 0:
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if (((n === "orcid") ? true : (n === "Orcid")) ? true : (n === "ORCID")) {
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default:
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}, matchValue_1));
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if (orcid == null) {
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const matchValue_5 = p.EMail;
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const matchValue_6 = p.FirstName;
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const matchValue_7 = p.MidInitials;
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const matchValue_8 = p.LastName;
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let matchResult_1, fn, ln, mn, fn_1, ln_1, ln_2, fn_2;
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}
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}
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matchResult_1 = 1;
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fn_1 = matchValue_6;
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}
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}
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fn = matchValue_6;
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ln = matchValue_8;
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}
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return (((("#" + replace(fn, " ", "_")) + "_") + replace(mn, " ", "_")) + "_") + replace(ln, " ", "_");
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case 1:
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return (("#" + replace(fn_1, " ", "_")) + "_") + replace(ln_1, " ", "_");
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case 2:
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return "#" + replace(ln_2, " ", "_");
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case 3:
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return "#" + replace(fn_2, " ", "_");
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default:
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return "#EmptyPerson";
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}
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}
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}
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}
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}
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export function encoder(options, oa) {
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const person = oa;
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oa_1 = Person.setCommentFromORCID(person);
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}
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}, toList(delay(() => {
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return append(ConverterOptions__get_SetID(options) ? singleton(["@id", (value = genID(oa_1), (typeof value === "string") ? ((s = value, s)) : nil)]) : singleton(tryInclude("@id", (value_2) => {
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}, oa_1["ID"])), delay(() => {
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return append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", (value_5 = "Person", (typeof value_5 === "string") ? ((s_2 = value_5, s_2)) : nil)]) : empty(), delay(() => append(singleton(tryInclude("firstName", (value_7) => {
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}, oa_1["FirstName"])), delay(() => append(singleton(tryInclude("lastName", (value_10) => {
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}, oa_1["EMail"])), delay(() => append(singleton(tryInclude("phone", (value_19) => {
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}, oa_1["Fax"])), delay(() => append(singleton(tryInclude("address", (value_25) => {
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}, oa_1["Address"])), delay(() => append(singleton(tryInclude("affiliation", (value_28) => {
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}, oa_1["Affiliation"])), delay(() => append(singleton(tryInclude("roles", (oa_2) => OntologyAnnotation_encoder(options, oa_2), oa_1["Roles"])), delay(() => singleton(tryInclude("comments", (comment) => encoder_1(options, comment), oa_1["Comments"]))))))))))))))))))))));
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}))));
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}
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export function decoder(options) {
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return (path_10) => ((v) => object_23((get$) => {
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let objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_19, decoder_1, objectArg_9, arg_21, decoder_2, objectArg_10;
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let person;
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let ID;
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const objectArg = get$.Optional;
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ID = objectArg.Field("@id", uri);
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let FirstName;
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const objectArg_1 = get$.Optional;
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FirstName = objectArg_1.Field("firstName", string);
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person = (new Person(ID, void 0, (objectArg_2 = get$.Optional, objectArg_2.Field("lastName", string)), FirstName, (objectArg_3 = get$.Optional, objectArg_3.Field("midInitials", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("email", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("phone", string)), (objectArg_6 = get$.Optional, objectArg_6.Field("fax", string)), (objectArg_7 = get$.Optional, objectArg_7.Field("address", string)), (objectArg_8 = get$.Optional, objectArg_8.Field("affiliation", string)), (arg_19 = ((decoder_1 = OntologyAnnotation_decoder(options), (path_8) => ((value_8) => array_1(uncurry2(decoder_1), path_8, value_8)))), (objectArg_9 = get$.Optional, objectArg_9.Field("roles", uncurry2(arg_19)))), (arg_21 = ((decoder_2 = decoder_3(options), (path_9) => ((value_9) => array_1(uncurry2(decoder_2), path_9, value_9)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21))))));
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export function toJsonString(p) {
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package/ISA/ISA.Json/Process.js
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import { replace } from "../../fable_modules/fable-library.4.5.0/String.js";
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import { ProtocolParameter } from "../ISA/JsonTypes/ProtocolParameter.js";
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import { Value } from "../ISA/JsonTypes/Value.js";
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import { list as list_2, toString, nil, object as object_22 } from "../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
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import { map, choose } from "../../fable_modules/fable-library.4.5.0/List.js";
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import { uncurry2, equals } from "../../fable_modules/fable-library.4.5.0/Util.js";
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import { empty, singleton, append, delay, toList } from "../../fable_modules/fable-library.4.5.0/Seq.js";
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|
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import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor, ConverterOptions__get_IncludeType, ConverterOptions__get_SetID } from "./ConverterOptions.js";
|
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|
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import { tryInclude } from "./GEncode.js";
|
|
10
|
-
import { Protocol_decoder, Protocol_encoder, ProtocolParameter_decoder, ProtocolParameter_encoder } from "./Protocol.js";
|
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|
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import { Value_decoder, Value_encoder } from "./Factor.js";
|
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|
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import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "./Ontology.js";
|
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|
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import { list as list_1, string, object as object_23 } from "../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
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import { ProcessParameterValue } from "../ISA/JsonTypes/ProcessParameterValue.js";
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import { ProcessInput } from "../ISA/JsonTypes/ProcessInput.js";
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import { Data_decoder, Sample_decoder, Source_decoder, Source_encoder, Data_encoder, Sample_encoder } from "./Data.js";
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import { Material_decoder, Material_encoder } from "./Material.js";
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import { FSharpResult$2 } from "../../fable_modules/fable-library.4.5.0/Choice.js";
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import { ProcessOutput } from "../ISA/JsonTypes/ProcessOutput.js";
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import { URIModule_toString } from "../ISA/JsonTypes/URI.js";
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import { decoder as decoder_4, encoder } from "./Comment.js";
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return append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", (value_2 = "ProcessParameterValue", (typeof value_2 === "string") ? ((s_1 = value_2, s_1)) : nil)]) : empty(), delay(() => append(singleton(tryInclude("category", (oa_1) => ProtocolParameter_encoder(options, oa_1), oa["Category"])), delay(() => append(singleton(tryInclude("value", (value_4) => Value_encoder(options, value_4), oa["Value"])), delay(() => singleton(tryInclude("unit", (oa_2) => OntologyAnnotation_encoder(options, oa_2), oa["Unit"]))))))));
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return new ProcessParameterValue((arg_1 = ProtocolParameter_decoder(options), (objectArg = get$.Optional, objectArg.Field("category", uncurry2(arg_1)))), (objectArg_1 = get$.Optional, objectArg_1.Field("value", (s, json) => Value_decoder(options, s, json))), (arg_5 = OntologyAnnotation_decoder(options), (objectArg_2 = get$.Optional, objectArg_2.Field("unit", uncurry2(arg_5)))));
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}
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export function ProcessParameterValue_fromJsonString(s) {
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}
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/**
|
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*/
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export function ProcessParameterValue_toStringLD(p) {
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let returnVal;
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return toString(2, ProcessParameterValue_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), p));
|
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}
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export function ProcessInput_encoder(options, value) {
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}
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else if (value.tag === 2) {
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}
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else if (value.tag === 3) {
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}
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else {
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return Source_encoder(options, value.fields[0]);
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}
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}
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}
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export function ProcessInput_decoder(options, s, json) {
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const matchValue_1 = Sample_decoder(options, s, json);
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if (matchValue_1.tag === 1) {
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const matchValue_2 = Data_decoder(options, s, json);
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const matchValue_3 = Material_decoder(options, s, json);
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|
|
139
|
-
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|
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let options;
|
|
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|
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return fromJsonString(uncurry2((options = ConverterOptions_$ctor(), (s_1) => ((json) => ProcessInput_decoder(options, s_1, json)))), s);
|
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|
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}
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|
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|
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|
|
144
|
-
export function ProcessInput_toJsonString(m) {
|
|
145
|
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return toString(2, ProcessInput_encoder(ConverterOptions_$ctor(), m));
|
|
146
|
-
}
|
|
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|
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|
|
148
|
-
export function ProcessInput_toStringLD(m) {
|
|
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|
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|
|
150
|
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return toString(2, ProcessInput_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), m));
|
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}
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export function ProcessOutput_encoder(options, value) {
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|
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else {
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|
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|
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|
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}
|
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|
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}
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|
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|
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|
|
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|
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export function ProcessOutput_decoder(options, s, json) {
|
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const matchValue = Sample_decoder(options, s, json);
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|
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const matchValue_1 = Data_decoder(options, s, json);
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|
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if (matchValue_1.tag === 1) {
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|
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const matchValue_2 = Material_decoder(options, s, json);
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|
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|
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|
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}
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else {
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return new FSharpResult$2(0, [new ProcessOutput(2, [matchValue_2.fields[0]])]);
|
|
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|
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}
|
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|
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}
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else {
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|
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return new FSharpResult$2(0, [new ProcessOutput(1, [matchValue_1.fields[0]])]);
|
|
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|
-
}
|
|
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|
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}
|
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|
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else {
|
|
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|
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return new FSharpResult$2(0, [new ProcessOutput(0, [matchValue.fields[0]])]);
|
|
189
|
-
}
|
|
190
|
-
}
|
|
191
|
-
|
|
192
|
-
export function ProcessOutput_fromJsonString(s) {
|
|
193
|
-
let options;
|
|
194
|
-
return fromJsonString(uncurry2((options = ConverterOptions_$ctor(), (s_1) => ((json) => ProcessOutput_decoder(options, s_1, json)))), s);
|
|
195
|
-
}
|
|
196
|
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|
|
197
|
-
export function ProcessOutput_toJsonString(m) {
|
|
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|
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return toString(2, ProcessOutput_encoder(ConverterOptions_$ctor(), m));
|
|
199
|
-
}
|
|
200
|
-
|
|
201
|
-
export function Process_genID(p) {
|
|
202
|
-
const matchValue = p.ID;
|
|
203
|
-
if (matchValue == null) {
|
|
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|
-
const matchValue_1 = p.Name;
|
|
205
|
-
if (matchValue_1 == null) {
|
|
206
|
-
return "#EmptyProcess";
|
|
207
|
-
}
|
|
208
|
-
else {
|
|
209
|
-
return "#Process_" + replace(matchValue_1, " ", "_");
|
|
210
|
-
}
|
|
211
|
-
}
|
|
212
|
-
else {
|
|
213
|
-
return URIModule_toString(matchValue);
|
|
214
|
-
}
|
|
215
|
-
}
|
|
216
|
-
|
|
217
|
-
export function Process_encoder(options, oa) {
|
|
218
|
-
return object_22(choose((tupledArg) => {
|
|
219
|
-
const v = tupledArg[1];
|
|
220
|
-
if (equals(v, nil)) {
|
|
221
|
-
return void 0;
|
|
222
|
-
}
|
|
223
|
-
else {
|
|
224
|
-
return [tupledArg[0], v];
|
|
225
|
-
}
|
|
226
|
-
}, toList(delay(() => {
|
|
227
|
-
let value, s;
|
|
228
|
-
return append(ConverterOptions__get_SetID(options) ? singleton(["@id", (value = Process_genID(oa), (typeof value === "string") ? ((s = value, s)) : nil)]) : singleton(tryInclude("@id", (value_2) => {
|
|
229
|
-
let s_1;
|
|
230
|
-
const value_3 = value_2;
|
|
231
|
-
return (typeof value_3 === "string") ? ((s_1 = value_3, s_1)) : nil;
|
|
232
|
-
}, oa["ID"])), delay(() => {
|
|
233
|
-
let value_5, s_2;
|
|
234
|
-
return append(ConverterOptions__get_IncludeType(options) ? singleton(["@type", (value_5 = "Process", (typeof value_5 === "string") ? ((s_2 = value_5, s_2)) : nil)]) : empty(), delay(() => append(singleton(tryInclude("name", (value_7) => {
|
|
235
|
-
let s_3;
|
|
236
|
-
const value_8 = value_7;
|
|
237
|
-
return (typeof value_8 === "string") ? ((s_3 = value_8, s_3)) : nil;
|
|
238
|
-
}, oa["Name"])), delay(() => append(singleton(tryInclude("executesProtocol", (oa_1) => Protocol_encoder(options, oa_1), oa["ExecutesProtocol"])), delay(() => append(singleton(tryInclude("parameterValues", (oa_2) => ProcessParameterValue_encoder(options, oa_2), oa["ParameterValues"])), delay(() => append(singleton(tryInclude("performer", (value_10) => {
|
|
239
|
-
let s_4;
|
|
240
|
-
const value_11 = value_10;
|
|
241
|
-
return (typeof value_11 === "string") ? ((s_4 = value_11, s_4)) : nil;
|
|
242
|
-
}, oa["Performer"])), delay(() => append(singleton(tryInclude("date", (value_13) => {
|
|
243
|
-
let s_5;
|
|
244
|
-
const value_14 = value_13;
|
|
245
|
-
return (typeof value_14 === "string") ? ((s_5 = value_14, s_5)) : nil;
|
|
246
|
-
}, oa["Date"])), delay(() => append(singleton(tryInclude("previousProcess", (oa_3) => Process_encoder(options, oa_3), oa["PreviousProcess"])), delay(() => append(singleton(tryInclude("nextProcess", (oa_4) => Process_encoder(options, oa_4), oa["NextProcess"])), delay(() => append(singleton(tryInclude("inputs", (value_16) => ProcessInput_encoder(options, value_16), oa["Inputs"])), delay(() => append(singleton(tryInclude("outputs", (value_17) => ProcessOutput_encoder(options, value_17), oa["Outputs"])), delay(() => singleton(tryInclude("comments", (comment) => encoder(options, comment), oa["Comments"]))))))))))))))))))))));
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}));
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}))));
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}
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export function Process_decoder(options) {
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return (path_7) => ((v) => object_23((get$) => {
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let objectArg, objectArg_1, arg_5, objectArg_2, arg_7, decoder, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, objectArg_8, objectArg_9, arg_21, decoder_3, objectArg_10;
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return new Process((objectArg = get$.Optional, objectArg.Field("@id", uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (arg_5 = Protocol_decoder(options), (objectArg_2 = get$.Optional, objectArg_2.Field("executesProtocol", uncurry2(arg_5)))), (arg_7 = ((decoder = ProcessParameterValue_decoder(options), (path_1) => ((value_1) => list_1(uncurry2(decoder), path_1, value_1)))), (objectArg_3 = get$.Optional, objectArg_3.Field("parameterValues", uncurry2(arg_7)))), (objectArg_4 = get$.Optional, objectArg_4.Field("performer", string)), (objectArg_5 = get$.Optional, objectArg_5.Field("date", string)), (arg_13 = Process_decoder(options), (objectArg_6 = get$.Optional, objectArg_6.Field("previousProcess", uncurry2(arg_13)))), (arg_15 = Process_decoder(options), (objectArg_7 = get$.Optional, objectArg_7.Field("nextProcess", uncurry2(arg_15)))), (objectArg_8 = get$.Optional, objectArg_8.Field("inputs", (path_4, value_4) => list_1((s_1, json_1) => ProcessInput_decoder(options, s_1, json_1), path_4, value_4))), (objectArg_9 = get$.Optional, objectArg_9.Field("outputs", (path_5, value_5) => list_1((s_2, json_2) => ProcessOutput_decoder(options, s_2, json_2), path_5, value_5))), (arg_21 = ((decoder_3 = decoder_4(options), (path_6) => ((value_6) => list_1(uncurry2(decoder_3), path_6, value_6)))), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", uncurry2(arg_21)))));
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}, path_7, v));
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256
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}
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257
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258
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export function Process_fromJsonString(s) {
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259
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return fromJsonString(uncurry2(Process_decoder(ConverterOptions_$ctor())), s);
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260
|
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}
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261
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262
|
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export function Process_toJsonString(p) {
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|
263
|
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return toString(2, Process_encoder(ConverterOptions_$ctor(), p));
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264
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}
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265
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266
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/**
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267
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* exports in json-ld format
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268
|
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*/
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269
|
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export function Process_toStringLD(p) {
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|
270
|
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let returnVal;
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|
271
|
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return toString(2, Process_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), p));
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|
272
|
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}
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|
273
|
-
|
|
274
|
-
export function ProcessSequence_fromJsonString(s) {
|
|
275
|
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let decoder;
|
|
276
|
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return fromJsonString(uncurry2((decoder = Process_decoder(ConverterOptions_$ctor()), (path) => ((value) => list_1(uncurry2(decoder), path, value)))), s);
|
|
277
|
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}
|
|
278
|
-
|
|
279
|
-
export function ProcessSequence_toJsonString(p) {
|
|
280
|
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let options;
|
|
281
|
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return toString(2, list_2(map((options = ConverterOptions_$ctor(), (oa) => Process_encoder(options, oa)), p)));
|
|
282
|
-
}
|
|
283
|
-
|
|
284
|
-
/**
|
|
285
|
-
* exports in json-ld format
|
|
286
|
-
*/
|
|
287
|
-
export function ProcessSequence_toStringLD(p) {
|
|
288
|
-
let options, returnVal;
|
|
289
|
-
return toString(2, list_2(map((options = ((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal))), (oa) => Process_encoder(options, oa)), p)));
|
|
290
|
-
}
|
|
291
|
-
|