@nfdi4plants/arctrl 1.1.0 → 2.0.0-alpha.1

package/ISA/ISA/JsonTypes/StudyMaterials.js

@@ -1,45 +0,0 @@
-import { Record } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { Source_$reflection } from "./Source.js";
-import { record_type, option_type, list_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
-import { Sample_$reflection } from "./Sample.js";
-import { Material_$reflection } from "./Material.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { empty } from "../../../fable_modules/fable-library.4.5.0/List.js";
-
-export class StudyMaterials extends Record {
-    constructor(Sources, Samples, OtherMaterials) {
-        super();
-        this.Sources = Sources;
-        this.Samples = Samples;
-        this.OtherMaterials = OtherMaterials;
-    }
-}
-
-export function StudyMaterials_$reflection() {
-    return record_type("ARCtrl.ISA.StudyMaterials", [], StudyMaterials, () => [["Sources", option_type(list_type(Source_$reflection()))], ["Samples", option_type(list_type(Sample_$reflection()))], ["OtherMaterials", option_type(list_type(Material_$reflection()))]]);
-}
-
-export function StudyMaterials_make(sources, samples, otherMaterials) {
-    return new StudyMaterials(sources, samples, otherMaterials);
-}
-
-export function StudyMaterials_create_1BE9FA55(Sources, Samples, OtherMaterials) {
-    return StudyMaterials_make(Sources, Samples, OtherMaterials);
-}
-
-export function StudyMaterials_get_empty() {
-    return StudyMaterials_create_1BE9FA55();
-}
-
-export function StudyMaterials_getMaterials_Z34D4FD6D(am) {
-    return defaultArg(am.OtherMaterials, empty());
-}
-
-export function StudyMaterials_getSamples_Z34D4FD6D(am) {
-    return defaultArg(am.Samples, empty());
-}
-
-export function StudyMaterials_getSources_Z34D4FD6D(am) {
-    return defaultArg(am.Sources, empty());
-}
-

package/ISA/ISA/UIHelper.js

@@ -1,19 +0,0 @@
-import { CompositeCell } from "./ArcTypes/CompositeCell.js";
-
-/**
- * Updates current CompositeCell with information from OntologyAnnotation.
- * 
- * For `Term`, OntologyAnnotation (oa) is fully set. For `Unitized`, oa is set as unit while value is untouched.
- * For `FreeText` oa.NameText is set.
- */
-export function updateWithOA(oa, cell) {
-    switch (cell.tag) {
-        case 2:
-            return CompositeCell.createUnitized(cell.fields[0], oa);
-        case 1:
-            return CompositeCell.createFreeText(oa.NameText);
-        default:
-            return CompositeCell.createTerm(oa);
-    }
-}
-

package/ISA/ISA.Json/ArcTypes/ArcAssay.js

@@ -1,282 +0,0 @@
-import { OntologySourceReference_encoder, OntologyAnnotation_encoder, OntologySourceReference_decoder, OntologyAnnotation_decoder } from "../Ontology.js";
-import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor } from "../ConverterOptions.js";
-import { fromString, array, object as object_1, string, list as list_1 } from "../../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { safeHash, equals, uncurry2 } from "../../../fable_modules/fable-library.4.5.0/Util.js";
-import { ArcTable_compressedDecoder, ArcTable_compressedEncoder, ArcTable_encoder, ArcTable_decoder } from "./ArcTable.js";
-import { encoder, decoder as decoder_1 } from "../Person.js";
-import { encoder as encoder_1, decoder as decoder_2 } from "../Comment.js";
-import { Factor_encoder, Factor_decoder } from "../Factor.js";
-import { encoder as encoder_2, decoder as decoder_3 } from "../Publication.js";
-import { value as value_3, map, defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { toArray } from "../../../fable_modules/fable-library.4.5.0/List.js";
-import { toString, object, seq } from "../../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { empty, singleton, append, delay, toList, map as map_1 } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
-import { ArcAssay } from "../../ISA/ArcTypes/ArcTypes.js";
-import { OATable_arrayFromMap, OATable_encoder, OATable_decoder, OATable_decodeOA, OATable_encodeOA } from "./OATable.js";
-import { Assay_decoder, Assay_encoder } from "../Assay.js";
-import { fromJsonString } from "../Decode.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
-import { StringTable_arrayFromMap, StringTable_encoder, StringTable_decoder } from "../StringTable.js";
-import { CellTable_arrayFromMap, CellTable_encoder, CellTable_decoder } from "./CellTable.js";
-import { Dictionary } from "../../../fable_modules/fable-library.4.5.0/MutableMap.js";
-
-export const JsonHelper_DecodeOa = OntologyAnnotation_decoder(ConverterOptions_$ctor());
-
-export const JsonHelper_DecodeTables = (path) => ((value) => list_1(uncurry2(ArcTable_decoder), path, value));
-
-export const JsonHelper_DecodePersons = (() => {
-    const decoder = decoder_1(ConverterOptions_$ctor());
-    return (path) => ((value) => list_1(uncurry2(decoder), path, value));
-})();
-
-export const JsonHelper_DecodeComments = (() => {
-    const decoder = decoder_2(ConverterOptions_$ctor());
-    return (path) => ((value) => list_1(uncurry2(decoder), path, value));
-})();
-
-export const JsonHelper_DecodeFactors = (() => {
-    const decoder = Factor_decoder(ConverterOptions_$ctor());
-    return (path) => ((value) => list_1(uncurry2(decoder), path, value));
-})();
-
-export const JsonHelper_DecodePublications = (() => {
-    const decoder = decoder_3(ConverterOptions_$ctor());
-    return (path) => ((value) => list_1(uncurry2(decoder), path, value));
-})();
-
-export const JsonHelper_DecodeOntologySourceReferences = (() => {
-    const decoder = OntologySourceReference_decoder(ConverterOptions_$ctor());
-    return (path) => ((value) => list_1(uncurry2(decoder), path, value));
-})();
-
-export function JsonHelper_tryGetTables(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map((collection) => Array.from(collection), (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodeTables)))), []);
-}
-
-export function JsonHelper_tryGetPersons(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodePersons)))), new Array(0));
-}
-
-export function JsonHelper_tryGetComments(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodeComments)))), new Array(0));
-}
-
-export function JsonHelper_tryGetPublications(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodePublications)))), new Array(0));
-}
-
-export function JsonHelper_tryGetOAs(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, (path, value) => list_1(uncurry2(JsonHelper_DecodeOa), path, value)))), new Array(0));
-}
-
-export function JsonHelper_tryGetFactors(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodeFactors)))), new Array(0));
-}
-
-export function JsonHelper_tryGetStringResizeArray(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map((collection) => Array.from(collection), (objectArg = get$.Optional, objectArg.Field(fieldName, (path_1, value_1) => list_1(string, path_1, value_1)))), []);
-}
-
-export function JsonHelper_tryGetOntologySourceReferences(get$, fieldName) {
-    let objectArg;
-    return defaultArg(map(toArray, (objectArg = get$.Optional, objectArg.Field(fieldName, uncurry2(JsonHelper_DecodeOntologySourceReferences)))), new Array(0));
-}
-
-export function JsonHelper_EncoderOA(t) {
-    return OntologyAnnotation_encoder(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderOAs(t) {
-    return seq(map_1(JsonHelper_EncoderOA, t));
-}
-
-export function JsonHelper_EncoderTables(t) {
-    return seq(map_1(ArcTable_encoder, t));
-}
-
-export function JsonHelper_EncoderPerson(t) {
-    return encoder(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderPersons(t) {
-    return seq(map_1(JsonHelper_EncoderPerson, t));
-}
-
-export function JsonHelper_EncoderComment(t) {
-    return encoder_1(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderComments(t) {
-    return seq(map_1(JsonHelper_EncoderComment, t));
-}
-
-export function JsonHelper_EncoderPublication(t) {
-    return encoder_2(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderPublications(t) {
-    return seq(map_1(JsonHelper_EncoderPublication, t));
-}
-
-export function JsonHelper_EncoderFactor(t) {
-    return Factor_encoder(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderFactors(t) {
-    return seq(map_1(JsonHelper_EncoderFactor, t));
-}
-
-export function JsonHelper_EncoderOntologySourceReference(t) {
-    return OntologySourceReference_encoder(ConverterOptions_$ctor(), t);
-}
-
-export function JsonHelper_EncoderOntologySourceReferences(t) {
-    return seq(map_1(JsonHelper_EncoderOntologySourceReference, t));
-}
-
-export function ArcAssay_encoder(assay) {
-    return object(toList(delay(() => append(singleton(["Identifier", assay.Identifier]), delay(() => append((assay.MeasurementType != null) ? singleton(["MeasurementType", JsonHelper_EncoderOA(value_3(assay.MeasurementType))]) : empty(), delay(() => append((assay.TechnologyType != null) ? singleton(["TechnologyType", JsonHelper_EncoderOA(value_3(assay.TechnologyType))]) : empty(), delay(() => append((assay.TechnologyPlatform != null) ? singleton(["TechnologyPlatform", JsonHelper_EncoderOA(value_3(assay.TechnologyPlatform))]) : empty(), delay(() => append((assay.Tables.length !== 0) ? singleton(["Tables", JsonHelper_EncoderTables(assay.Tables)]) : empty(), delay(() => append((assay.Performers.length !== 0) ? singleton(["Performers", JsonHelper_EncoderPersons(assay.Performers)]) : empty(), delay(() => ((assay.Comments.length !== 0) ? singleton(["Comments", JsonHelper_EncoderComments(assay.Comments)]) : empty()))))))))))))))));
-}
-
-export const ArcAssay_decoder = (path_1) => ((v) => object_1((get$) => {
-    let identifier;
-    const objectArg = get$.Required;
-    identifier = objectArg.Field("Identifier", string);
-    let measurementType;
-    const objectArg_1 = get$.Optional;
-    measurementType = objectArg_1.Field("MeasurementType", uncurry2(JsonHelper_DecodeOa));
-    let technologyType;
-    const objectArg_2 = get$.Optional;
-    technologyType = objectArg_2.Field("TechnologyType", uncurry2(JsonHelper_DecodeOa));
-    let technologyPlatform;
-    const objectArg_3 = get$.Optional;
-    technologyPlatform = objectArg_3.Field("TechnologyPlatform", uncurry2(JsonHelper_DecodeOa));
-    const tables = JsonHelper_tryGetTables(get$, "Tables");
-    const performers = JsonHelper_tryGetPersons(get$, "Performers");
-    const comments = JsonHelper_tryGetComments(get$, "Comments");
-    return ArcAssay.make(identifier, measurementType, technologyType, technologyPlatform, tables, performers, comments);
-}, path_1, v));
-
-export function ArcAssay_compressedEncoder(stringTable, oaTable, cellTable, assay) {
-    return object(toList(delay(() => append(singleton(["Identifier", assay.Identifier]), delay(() => append((assay.MeasurementType != null) ? singleton(["MeasurementType", OATable_encodeOA(oaTable, value_3(assay.MeasurementType))]) : empty(), delay(() => append((assay.TechnologyType != null) ? singleton(["TechnologyType", OATable_encodeOA(oaTable, value_3(assay.TechnologyType))]) : empty(), delay(() => append((assay.TechnologyPlatform != null) ? singleton(["TechnologyPlatform", OATable_encodeOA(oaTable, value_3(assay.TechnologyPlatform))]) : empty(), delay(() => append((assay.Tables.length !== 0) ? singleton(["Tables", seq(map_1((table) => ArcTable_compressedEncoder(stringTable, oaTable, cellTable, table), assay.Tables))]) : empty(), delay(() => append((assay.Performers.length !== 0) ? singleton(["Performers", JsonHelper_EncoderPersons(assay.Performers)]) : empty(), delay(() => ((assay.Comments.length !== 0) ? singleton(["Comments", JsonHelper_EncoderComments(assay.Comments)]) : empty()))))))))))))))));
-}
-
-export function ArcAssay_compressedDecoder(stringTable, oaTable, cellTable) {
-    return (path_2) => ((v) => object_1((get$) => {
-        let arg_1, decoder, objectArg;
-        const tables = defaultArg(map((collection) => Array.from(collection), (arg_1 = ((decoder = ArcTable_compressedDecoder(stringTable, oaTable, cellTable), (path) => ((value) => array(uncurry2(decoder), path, value)))), (objectArg = get$.Optional, objectArg.Field("Tables", uncurry2(arg_1))))), []);
-        let identifier;
-        const objectArg_1 = get$.Required;
-        identifier = objectArg_1.Field("Identifier", string);
-        let measurementType;
-        const objectArg_2 = get$.Optional;
-        measurementType = objectArg_2.Field("MeasurementType", (s, o) => OATable_decodeOA(oaTable, s, o));
-        let technologyType;
-        const objectArg_3 = get$.Optional;
-        technologyType = objectArg_3.Field("TechnologyType", (s_1, o_1) => OATable_decodeOA(oaTable, s_1, o_1));
-        let technologyPlatform;
-        const objectArg_4 = get$.Optional;
-        technologyPlatform = objectArg_4.Field("TechnologyPlatform", (s_2, o_2) => OATable_decodeOA(oaTable, s_2, o_2));
-        const performers = JsonHelper_tryGetPersons(get$, "Performers");
-        const comments = JsonHelper_tryGetComments(get$, "Comments");
-        return ArcAssay.make(identifier, measurementType, technologyType, technologyPlatform, tables, performers, comments);
-    }, path_2, v));
-}
-
-/**
- * exports in json-ld format
- */
-export function ArcAssay_toStringLD(a) {
-    let returnVal;
-    return toString(2, Assay_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), a.ToAssay()));
-}
-
-export function ArcAssay_fromJsonString(s) {
-    const a = fromJsonString(uncurry2(Assay_decoder(ConverterOptions_$ctor())), s);
-    return ArcAssay.fromAssay(a);
-}
-
-export function ArcAssay_toJsonString(a) {
-    return toString(2, Assay_encoder(ConverterOptions_$ctor(), a.ToAssay()));
-}
-
-export function ArcAssay_toArcJsonString(a) {
-    return toString(0, ArcAssay_encoder(a));
-}
-
-export function ArcAssay_fromArcJsonString(jsonString) {
-    const matchValue = fromString(uncurry2(ArcAssay_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcAssay: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_fromArcJsonString_Static_Z721C83C5(jsonString) {
-    const matchValue = fromString(uncurry2(ArcAssay_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcAssay: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_ToArcJsonString_71136F3F(this$, spaces) {
-    return toString(defaultArg(spaces, 0), ArcAssay_encoder(this$));
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_toArcJsonString_Static_1C75D08D(a) {
-    return ARCtrl_ISA_ArcAssay__ArcAssay_ToArcJsonString_71136F3F(a);
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_fromCompressedJsonString_Static_Z721C83C5(jsonString) {
-    const matchValue = fromString((path, v) => object_1((get$) => {
-        let arg_5, objectArg_2;
-        let stringTable;
-        const objectArg = get$.Required;
-        stringTable = objectArg.Field("stringTable", uncurry2(StringTable_decoder));
-        let oaTable;
-        const arg_3 = OATable_decoder(stringTable);
-        const objectArg_1 = get$.Required;
-        oaTable = objectArg_1.Field("oaTable", uncurry2(arg_3));
-        const arg_7 = ArcAssay_compressedDecoder(stringTable, oaTable, (arg_5 = CellTable_decoder(stringTable, oaTable), (objectArg_2 = get$.Required, objectArg_2.Field("cellTable", uncurry2(arg_5)))));
-        const objectArg_3 = get$.Required;
-        return objectArg_3.Field("assay", uncurry2(arg_7));
-    }, path, v), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcAssay: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_ToCompressedJsonString_71136F3F(this$, spaces) {
-    const spaces_1 = defaultArg(spaces, 0) | 0;
-    const stringTable = new Map([]);
-    const oaTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
-    const cellTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
-    const arcAssay = ArcAssay_compressedEncoder(stringTable, oaTable, cellTable, this$);
-    return toString(spaces_1, object([["cellTable", CellTable_encoder(stringTable, oaTable, CellTable_arrayFromMap(cellTable))], ["oaTable", OATable_encoder(stringTable, OATable_arrayFromMap(oaTable))], ["stringTable", StringTable_encoder(StringTable_arrayFromMap(stringTable))], ["assay", arcAssay]]));
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_toCompressedJsonString_Static_1C75D08D(a) {
-    return ARCtrl_ISA_ArcAssay__ArcAssay_ToCompressedJsonString_71136F3F(a);
-}
-

package/ISA/ISA.Json/ArcTypes/ArcInvestigation.js

@@ -1,93 +0,0 @@
-import { toString, seq, object } from "../../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map, empty, singleton, append, delay, toList } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
-import { map as map_1, defaultArg, value as value_9 } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { JsonHelper_tryGetComments, JsonHelper_tryGetStringResizeArray, ArcAssay_decoder, JsonHelper_tryGetPersons, JsonHelper_tryGetPublications, JsonHelper_tryGetOntologySourceReferences, JsonHelper_EncoderComments, ArcAssay_encoder, JsonHelper_EncoderPersons, JsonHelper_EncoderPublications, JsonHelper_EncoderOntologySourceReferences } from "./ArcAssay.js";
-import { ArcStudy_decoder, ArcStudy_encoder } from "./ArcStudy.js";
-import { fromString, list, string, object as object_1 } from "../../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { uncurry2 } from "../../../fable_modules/fable-library.4.5.0/Util.js";
-import { ArcInvestigation } from "../../ISA/ArcTypes/ArcTypes.js";
-import { decoder as decoder_2, encoder } from "../Investigation.js";
-import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor } from "../ConverterOptions.js";
-import { fromJsonString } from "../Decode.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
-
-export function ArcInvestigation_encoder(inv) {
-    return object(toList(delay(() => append(singleton(["Identifier", inv.Identifier]), delay(() => append((inv.Title != null) ? singleton(["Title", value_9(inv.Title)]) : empty(), delay(() => append((inv.Description != null) ? singleton(["Description", value_9(inv.Description)]) : empty(), delay(() => append((inv.SubmissionDate != null) ? singleton(["SubmissionDate", value_9(inv.SubmissionDate)]) : empty(), delay(() => append((inv.PublicReleaseDate != null) ? singleton(["PublicReleaseDate", value_9(inv.PublicReleaseDate)]) : empty(), delay(() => append((inv.OntologySourceReferences.length !== 0) ? singleton(["OntologySourceReferences", JsonHelper_EncoderOntologySourceReferences(inv.OntologySourceReferences)]) : empty(), delay(() => append((inv.Publications.length !== 0) ? singleton(["Publications", JsonHelper_EncoderPublications(inv.Publications)]) : empty(), delay(() => append((inv.Contacts.length !== 0) ? singleton(["Contacts", JsonHelper_EncoderPersons(inv.Contacts)]) : empty(), delay(() => append((inv.Assays.length !== 0) ? singleton(["Assays", seq(map(ArcAssay_encoder, inv.Assays))]) : empty(), delay(() => append((inv.Studies.length !== 0) ? singleton(["Studies", seq(map(ArcStudy_encoder, inv.Studies))]) : empty(), delay(() => append((inv.RegisteredStudyIdentifiers.length !== 0) ? singleton(["RegisteredStudyIdentifiers", seq(map((value_5) => value_5, inv.RegisteredStudyIdentifiers))]) : empty(), delay(() => ((inv.Comments.length !== 0) ? singleton(["Comments", JsonHelper_EncoderComments(inv.Comments)]) : empty()))))))))))))))))))))))))));
-}
-
-export const ArcInvestigation_decoder = (path_7) => ((v) => object_1((get$_2) => {
-    let objectArg, objectArg_1;
-    let identifier;
-    const objectArg_2 = get$_2.Required;
-    identifier = objectArg_2.Field("Identifier", string);
-    let title;
-    const objectArg_3 = get$_2.Optional;
-    title = objectArg_3.Field("Title", string);
-    let description;
-    const objectArg_4 = get$_2.Optional;
-    description = objectArg_4.Field("Description", string);
-    let submissionDate;
-    const objectArg_5 = get$_2.Optional;
-    submissionDate = objectArg_5.Field("SubmissionDate", string);
-    let publicReleaseDate;
-    const objectArg_6 = get$_2.Optional;
-    publicReleaseDate = objectArg_6.Field("PublicReleaseDate", string);
-    const ontologySourceReferences = JsonHelper_tryGetOntologySourceReferences(get$_2, "OntologySourceReferences");
-    const publications = JsonHelper_tryGetPublications(get$_2, "Publications");
-    const contacts = JsonHelper_tryGetPersons(get$_2, "Contacts");
-    const assays = defaultArg(map_1((collection) => Array.from(collection), (objectArg = get$_2.Optional, objectArg.Field("Assays", (path, value) => list(uncurry2(ArcAssay_decoder), path, value)))), []);
-    const studies = defaultArg(map_1((collection_1) => Array.from(collection_1), (objectArg_1 = get$_2.Optional, objectArg_1.Field("Studies", (path_1, value_1) => list(uncurry2(ArcStudy_decoder), path_1, value_1)))), []);
-    const registeredStudyIdentifiers = JsonHelper_tryGetStringResizeArray(get$_2, "RegisteredStudyIdentifiers");
-    const comments = JsonHelper_tryGetComments(get$_2, "Comments");
-    return ArcInvestigation.make(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, []);
-}, path_7, v));
-
-/**
- * exports in json-ld format
- */
-export function ArcInvestigation_toStringLD(a) {
-    let returnVal;
-    return toString(2, encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), a.ToInvestigation()));
-}
-
-export function ArcInvestigation_fromJsonString(s) {
-    const i = fromJsonString(uncurry2(decoder_2(ConverterOptions_$ctor())), s);
-    return ArcInvestigation.fromInvestigation(i);
-}
-
-export function ArcInvestigation_toJsonString(a) {
-    return toString(2, encoder(ConverterOptions_$ctor(), a.ToInvestigation()));
-}
-
-export function ArcInvestigation_toArcJsonString(a) {
-    return toString(0, ArcInvestigation_encoder(a));
-}
-
-export function ArcInvestigation_fromArcJsonString(jsonString) {
-    const matchValue = fromString(uncurry2(ArcInvestigation_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcInvestigation: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_fromArcJsonString_Static_Z721C83C5(jsonString) {
-    const matchValue = fromString(uncurry2(ArcInvestigation_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcInvestigation: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToArcJsonString_71136F3F(this$, spaces) {
-    return toString(defaultArg(spaces, 0), ArcInvestigation_encoder(this$));
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_toArcJsonString_Static_Z4D87C88C(a) {
-    return ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToArcJsonString_71136F3F(a);
-}
-

package/ISA/ISA.Json/ArcTypes/ArcStudy.js

@@ -1,170 +0,0 @@
-import { toString, seq, object } from "../../../fable_modules/Thoth.Json.10.1.0/Encode.fs.js";
-import { map, empty, singleton, append, delay, toList } from "../../../fable_modules/fable-library.4.5.0/Seq.js";
-import { map as map_1, defaultArg, value as value_7 } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { JsonHelper_tryGetComments, JsonHelper_tryGetFactors, JsonHelper_tryGetStringResizeArray, JsonHelper_tryGetTables, JsonHelper_tryGetOAs, JsonHelper_tryGetPersons, JsonHelper_tryGetPublications, JsonHelper_EncoderComments, JsonHelper_EncoderFactors, JsonHelper_EncoderTables, JsonHelper_EncoderOAs, JsonHelper_EncoderPersons, JsonHelper_EncoderPublications } from "./ArcAssay.js";
-import { fromString, array, string, object as object_1 } from "../../../fable_modules/Thoth.Json.10.1.0/Decode.fs.js";
-import { ArcStudy } from "../../ISA/ArcTypes/ArcTypes.js";
-import { ArcTable_compressedDecoder, ArcTable_compressedEncoder } from "./ArcTable.js";
-import { safeHash, equals, uncurry2 } from "../../../fable_modules/fable-library.4.5.0/Util.js";
-import { Study_decoder, Study_encoder } from "../Study.js";
-import { ConverterOptions__set_IncludeType_Z1FBCCD16, ConverterOptions__set_SetID_Z1FBCCD16, ConverterOptions_$ctor } from "../ConverterOptions.js";
-import { fromJsonString } from "../Decode.js";
-import { printf, toFail } from "../../../fable_modules/fable-library.4.5.0/String.js";
-import { StringTable_arrayFromMap, StringTable_encoder, StringTable_decoder } from "../StringTable.js";
-import { OATable_arrayFromMap, OATable_encoder, OATable_decoder } from "./OATable.js";
-import { CellTable_arrayFromMap, CellTable_encoder, CellTable_decoder } from "./CellTable.js";
-import { Dictionary } from "../../../fable_modules/fable-library.4.5.0/MutableMap.js";
-
-export function ArcStudy_encoder(study) {
-    return object(toList(delay(() => append(singleton(["Identifier", study.Identifier]), delay(() => append((study.Title != null) ? singleton(["Title", value_7(study.Title)]) : empty(), delay(() => append((study.Description != null) ? singleton(["Description", value_7(study.Description)]) : empty(), delay(() => append((study.SubmissionDate != null) ? singleton(["SubmissionDate", value_7(study.SubmissionDate)]) : empty(), delay(() => append((study.PublicReleaseDate != null) ? singleton(["PublicReleaseDate", value_7(study.PublicReleaseDate)]) : empty(), delay(() => append((study.Publications.length !== 0) ? singleton(["Publications", JsonHelper_EncoderPublications(study.Publications)]) : empty(), delay(() => append((study.Contacts.length !== 0) ? singleton(["Contacts", JsonHelper_EncoderPersons(study.Contacts)]) : empty(), delay(() => append((study.StudyDesignDescriptors.length !== 0) ? singleton(["StudyDesignDescriptors", JsonHelper_EncoderOAs(study.StudyDesignDescriptors)]) : empty(), delay(() => append((study.TableCount !== 0) ? singleton(["Tables", JsonHelper_EncoderTables(study.Tables)]) : empty(), delay(() => append((study.RegisteredAssayIdentifiers.length !== 0) ? singleton(["RegisteredAssayIdentifiers", seq(map((value_5) => value_5, study.RegisteredAssayIdentifiers))]) : empty(), delay(() => append((study.Factors.length !== 0) ? singleton(["Factors", JsonHelper_EncoderFactors(study.Factors)]) : empty(), delay(() => ((study.Comments.length !== 0) ? singleton(["Comments", JsonHelper_EncoderComments(study.Comments)]) : empty()))))))))))))))))))))))))));
-}
-
-export const ArcStudy_decoder = (path_5) => ((v) => object_1((get$) => {
-    let identifier;
-    const objectArg = get$.Required;
-    identifier = objectArg.Field("Identifier", string);
-    let title;
-    const objectArg_1 = get$.Optional;
-    title = objectArg_1.Field("Title", string);
-    let description;
-    const objectArg_2 = get$.Optional;
-    description = objectArg_2.Field("Description", string);
-    let submissionDate;
-    const objectArg_3 = get$.Optional;
-    submissionDate = objectArg_3.Field("SubmissionDate", string);
-    let publicReleaseDate;
-    const objectArg_4 = get$.Optional;
-    publicReleaseDate = objectArg_4.Field("PublicReleaseDate", string);
-    const publications = JsonHelper_tryGetPublications(get$, "Publications");
-    const contacts = JsonHelper_tryGetPersons(get$, "Contacts");
-    const studyDesignDescriptors = JsonHelper_tryGetOAs(get$, "StudyDesignDescriptors");
-    const tables = JsonHelper_tryGetTables(get$, "Tables");
-    const registeredAssayIdentifiers = JsonHelper_tryGetStringResizeArray(get$, "RegisteredAssayIdentifiers");
-    const factors = JsonHelper_tryGetFactors(get$, "Factors");
-    const comments = JsonHelper_tryGetComments(get$, "Comments");
-    return ArcStudy.make(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, registeredAssayIdentifiers, factors, comments);
-}, path_5, v));
-
-export function ArcStudy_compressedEncoder(stringTable, oaTable, cellTable, study) {
-    return object(toList(delay(() => append(singleton(["Identifier", study.Identifier]), delay(() => append((study.Title != null) ? singleton(["Title", value_7(study.Title)]) : empty(), delay(() => append((study.Description != null) ? singleton(["Description", value_7(study.Description)]) : empty(), delay(() => append((study.SubmissionDate != null) ? singleton(["SubmissionDate", value_7(study.SubmissionDate)]) : empty(), delay(() => append((study.PublicReleaseDate != null) ? singleton(["PublicReleaseDate", value_7(study.PublicReleaseDate)]) : empty(), delay(() => append((study.Publications.length !== 0) ? singleton(["Publications", JsonHelper_EncoderPublications(study.Publications)]) : empty(), delay(() => append((study.Contacts.length !== 0) ? singleton(["Contacts", JsonHelper_EncoderPersons(study.Contacts)]) : empty(), delay(() => append((study.StudyDesignDescriptors.length !== 0) ? singleton(["StudyDesignDescriptors", JsonHelper_EncoderOAs(study.StudyDesignDescriptors)]) : empty(), delay(() => append((study.TableCount !== 0) ? singleton(["Tables", seq(map((table) => ArcTable_compressedEncoder(stringTable, oaTable, cellTable, table), study.Tables))]) : empty(), delay(() => append((study.RegisteredAssayIdentifiers.length !== 0) ? singleton(["RegisteredAssayIdentifiers", seq(map((value_5) => value_5, study.RegisteredAssayIdentifiers))]) : empty(), delay(() => append((study.Factors.length !== 0) ? singleton(["Factors", JsonHelper_EncoderFactors(study.Factors)]) : empty(), delay(() => ((study.Comments.length !== 0) ? singleton(["Comments", JsonHelper_EncoderComments(study.Comments)]) : empty()))))))))))))))))))))))))));
-}
-
-export function ArcStudy_compressedDecoder(stringTable, oaTable, cellTable) {
-    return (path_6) => ((v) => object_1((get$) => {
-        let arg_1, decoder, objectArg;
-        const tables = defaultArg(map_1((collection) => Array.from(collection), (arg_1 = ((decoder = ArcTable_compressedDecoder(stringTable, oaTable, cellTable), (path) => ((value) => array(uncurry2(decoder), path, value)))), (objectArg = get$.Optional, objectArg.Field("Tables", uncurry2(arg_1))))), []);
-        let identifier;
-        const objectArg_1 = get$.Required;
-        identifier = objectArg_1.Field("Identifier", string);
-        let title;
-        const objectArg_2 = get$.Optional;
-        title = objectArg_2.Field("Title", string);
-        let description;
-        const objectArg_3 = get$.Optional;
-        description = objectArg_3.Field("Description", string);
-        let submissionDate;
-        const objectArg_4 = get$.Optional;
-        submissionDate = objectArg_4.Field("SubmissionDate", string);
-        let publicReleaseDate;
-        const objectArg_5 = get$.Optional;
-        publicReleaseDate = objectArg_5.Field("PublicReleaseDate", string);
-        const publications = JsonHelper_tryGetPublications(get$, "Publications");
-        const contacts = JsonHelper_tryGetPersons(get$, "Contacts");
-        const studyDesignDescriptors = JsonHelper_tryGetOAs(get$, "StudyDesignDescriptors");
-        const registeredAssayIdentifiers = JsonHelper_tryGetStringResizeArray(get$, "RegisteredAssayIdentifiers");
-        const factors = JsonHelper_tryGetFactors(get$, "Factors");
-        const comments = JsonHelper_tryGetComments(get$, "Comments");
-        return ArcStudy.make(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, registeredAssayIdentifiers, factors, comments);
-    }, path_6, v));
-}
-
-/**
- * exports in json-ld format
- */
-export function ArcStudy_toStringLD(a, assays) {
-    let returnVal;
-    return toString(2, Study_encoder((returnVal = ConverterOptions_$ctor(), ((ConverterOptions__set_SetID_Z1FBCCD16(returnVal, true), ConverterOptions__set_IncludeType_Z1FBCCD16(returnVal, true)), returnVal)), a.ToStudy(assays)));
-}
-
-export function ArcStudy_fromJsonString(s) {
-    const s_1 = fromJsonString(uncurry2(Study_decoder(ConverterOptions_$ctor())), s);
-    return ArcStudy.fromStudy(s_1);
-}
-
-export function ArcStudy_toJsonString(a, assays) {
-    return toString(2, Study_encoder(ConverterOptions_$ctor(), a.ToStudy(assays)));
-}
-
-export function ArcStudy_toArcJsonString(a) {
-    return toString(0, ArcStudy_encoder(a));
-}
-
-export function ArcStudy_fromArcJsonString(jsonString) {
-    const matchValue = fromString(uncurry2(ArcStudy_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcStudy: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_fromArcJsonString_Static_Z721C83C5(jsonString) {
-    const matchValue = fromString(uncurry2(ArcStudy_decoder), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcStudy: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_ToArcJsonString_71136F3F(this$, spaces) {
-    return toString(defaultArg(spaces, 0), ArcStudy_encoder(this$));
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_toArcJsonString_Static_1B3D5E9B(a) {
-    return ARCtrl_ISA_ArcStudy__ArcStudy_ToArcJsonString_71136F3F(a);
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5(jsonString) {
-    const matchValue = fromString((path, v) => object_1((get$) => {
-        let arg_5, objectArg_2;
-        let stringTable;
-        const objectArg = get$.Required;
-        stringTable = objectArg.Field("stringTable", uncurry2(StringTable_decoder));
-        let oaTable;
-        const arg_3 = OATable_decoder(stringTable);
-        const objectArg_1 = get$.Required;
-        oaTable = objectArg_1.Field("oaTable", uncurry2(arg_3));
-        const arg_7 = ArcStudy_compressedDecoder(stringTable, oaTable, (arg_5 = CellTable_decoder(stringTable, oaTable), (objectArg_2 = get$.Required, objectArg_2.Field("cellTable", uncurry2(arg_5)))));
-        const objectArg_3 = get$.Required;
-        return objectArg_3.Field("study", uncurry2(arg_7));
-    }, path, v), jsonString);
-    if (matchValue.tag === 1) {
-        return toFail(printf("Error. Unable to parse json string to ArcAssay: %s"))(matchValue.fields[0]);
-    }
-    else {
-        return matchValue.fields[0];
-    }
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_ToCompressedJsonString_71136F3F(this$, spaces) {
-    const spaces_1 = defaultArg(spaces, 0) | 0;
-    const stringTable = new Map([]);
-    const oaTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
-    const cellTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
-    const arcStudy = ArcStudy_compressedEncoder(stringTable, oaTable, cellTable, this$);
-    return toString(spaces_1, object([["cellTable", CellTable_encoder(stringTable, oaTable, CellTable_arrayFromMap(cellTable))], ["oaTable", OATable_encoder(stringTable, OATable_arrayFromMap(oaTable))], ["stringTable", StringTable_encoder(StringTable_arrayFromMap(stringTable))], ["study", arcStudy]]));
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_toCompressedJsonString_Static_1B3D5E9B(s) {
-    return ARCtrl_ISA_ArcStudy__ArcStudy_ToCompressedJsonString_71136F3F(s);
-}
-