@nfdi4plants/arctrl 1.1.0 → 2.0.0-alpha.1

package/{ISA/ISA/JsonTypes → Core/Process}/Sample.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { append, choose, empty, length } from "../../../fable_modules/fable-library.4.5.0/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { append, choose, empty, length } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { record_type, list_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.16.0/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 import { FactorValue_$reflection } from "./FactorValue.js";
 import { Source_$reflection } from "./Source.js";
@@ -30,35 +30,35 @@ export class Sample extends Record {
 }
 
 export function Sample_$reflection() {
-    return record_type("ARCtrl.ISA.Sample", [], Sample, () => [["ID", option_type(string_type)], ["Name", option_type(string_type)], ["Characteristics", option_type(list_type(MaterialAttributeValue_$reflection()))], ["FactorValues", option_type(list_type(FactorValue_$reflection()))], ["DerivesFrom", option_type(list_type(Source_$reflection()))]]);
+    return record_type("ARCtrl.Process.Sample", [], Sample, () => [["ID", option_type(string_type)], ["Name", option_type(string_type)], ["Characteristics", option_type(list_type(MaterialAttributeValue_$reflection()))], ["FactorValues", option_type(list_type(FactorValue_$reflection()))], ["DerivesFrom", option_type(list_type(Source_$reflection()))]]);
 }
 
 export function Sample_make(id, name, characteristics, factorValues, derivesFrom) {
     return new Sample(id, name, characteristics, factorValues, derivesFrom);
 }
 
-export function Sample_create_E50ED22(Id, Name, Characteristics, FactorValues, DerivesFrom) {
+export function Sample_create_62424AD2(Id, Name, Characteristics, FactorValues, DerivesFrom) {
     return Sample_make(Id, Name, Characteristics, FactorValues, DerivesFrom);
 }
 
 export function Sample_get_empty() {
-    return Sample_create_E50ED22();
+    return Sample_create_62424AD2();
 }
 
 export function Sample__get_NameAsString(this$) {
     return defaultArg(this$.Name, "");
 }
 
-export function Sample_getCharacteristicUnits_Z29207F1E(s) {
+export function Sample_getCharacteristicUnits_53716792(s) {
     return choose((c) => c.Unit, defaultArg(s.Characteristics, empty()));
 }
 
-export function Sample_getFactorUnits_Z29207F1E(s) {
+export function Sample_getFactorUnits_53716792(s) {
     return choose((c) => c.Unit, defaultArg(s.FactorValues, empty()));
 }
 
-export function Sample_getUnits_Z29207F1E(s) {
-    return append(Sample_getCharacteristicUnits_Z29207F1E(s), Sample_getFactorUnits_Z29207F1E(s));
+export function Sample_getUnits_53716792(s) {
+    return append(Sample_getCharacteristicUnits_53716792(s), Sample_getFactorUnits_53716792(s));
 }
 
 export function Sample_setCharacteristicValues(values, s) {

package/{ISA/ISA/JsonTypes → Core/Process}/Source.js

@@ -1,8 +1,8 @@
-import { Record, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { choose, empty, length } from "../../../fable_modules/fable-library.4.5.0/List.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
-import { record_type, list_type, option_type, string_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { Record, toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { choose, empty, length } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { record_type, list_type, option_type, string_type } from "../../fable_modules/fable-library-js.4.16.0/Reflection.js";
 import { MaterialAttributeValue_$reflection } from "./MaterialAttributeValue.js";
 
 export class Source extends Record {
@@ -25,26 +25,26 @@ export class Source extends Record {
 }
 
 export function Source_$reflection() {
-    return record_type("ARCtrl.ISA.Source", [], Source, () => [["ID", option_type(string_type)], ["Name", option_type(string_type)], ["Characteristics", option_type(list_type(MaterialAttributeValue_$reflection()))]]);
+    return record_type("ARCtrl.Process.Source", [], Source, () => [["ID", option_type(string_type)], ["Name", option_type(string_type)], ["Characteristics", option_type(list_type(MaterialAttributeValue_$reflection()))]]);
 }
 
 export function Source_make(id, name, characteristics) {
     return new Source(id, name, characteristics);
 }
 
-export function Source_create_7A281ED9(Id, Name, Characteristics) {
+export function Source_create_Z5CA08497(Id, Name, Characteristics) {
     return Source_make(Id, Name, Characteristics);
 }
 
 export function Source_get_empty() {
-    return Source_create_7A281ED9();
+    return Source_create_Z5CA08497();
 }
 
 export function Source__get_NameAsString(this$) {
     return defaultArg(this$.Name, "");
 }
 
-export function Source_getUnits_Z28BE5327(m) {
+export function Source_getUnits_53E41069(m) {
     return choose((c) => c.Unit, defaultArg(m.Characteristics, empty()));
 }
 

package/{ISA/ISA/JsonTypes → Core/Process}/Value.js

@@ -1,11 +1,11 @@
-import { parse } from "../../../fable_modules/fable-library.4.5.0/Double.js";
-import { parse as parse_1 } from "../../../fable_modules/fable-library.4.5.0/Int32.js";
-import { OntologyAnnotation_$reflection, OntologyAnnotation } from "./OntologyAnnotation.js";
-import { defaultArg } from "../../../fable_modules/fable-library.4.5.0/Option.js";
-import { int32ToString } from "../../../fable_modules/fable-library.4.5.0/Util.js";
-import { Union, toString } from "../../../fable_modules/fable-library.4.5.0/Types.js";
-import { printf, toText } from "../../../fable_modules/fable-library.4.5.0/String.js";
-import { union_type, string_type, float64_type, int32_type } from "../../../fable_modules/fable-library.4.5.0/Reflection.js";
+import { tryParse } from "../../fable_modules/fable-library-js.4.16.0/Int32.js";
+import { Union, toString, FSharpRef } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { tryParse as tryParse_1 } from "../../fable_modules/fable-library-js.4.16.0/Double.js";
+import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../OntologyAnnotation.js";
+import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { int32ToString } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
+import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { union_type, string_type, float64_type, int32_type } from "../../fable_modules/fable-library-js.4.16.0/Reflection.js";
 
 export class Value extends Union {
     constructor(tag, fields) {
@@ -17,33 +17,26 @@ export class Value extends Union {
         return ["Ontology", "Int", "Float", "Name"];
     }
     static fromString(value) {
-        try {
-            return new Value(1, [parse_1(value, 511, false, 32)]);
+        let matchValue;
+        let outArg = 0;
+        matchValue = [tryParse(value, 511, false, 32, new FSharpRef(() => outArg, (v) => {
+            outArg = (v | 0);
+        })), outArg];
+        if (matchValue[0]) {
+            return new Value(1, [matchValue[1]]);
         }
-        catch (matchValue) {
-            try {
-                return new Value(2, [parse(value)]);
-            }
-            catch (matchValue_1) {
-                return new Value(3, [value]);
-            }
+        else {
+            let matchValue_1;
+            let outArg_1 = 0;
+            matchValue_1 = [tryParse_1(value, new FSharpRef(() => outArg_1, (v_2) => {
+                outArg_1 = v_2;
+            })), outArg_1];
+            return matchValue_1[0] ? (new Value(2, [matchValue_1[1]])) : (new Value(0, [OntologyAnnotation.create(value)]));
         }
     }
     static fromOptions(value, termSource, termAccesssion) {
         let value_1;
-        return (value == null) ? ((termSource == null) ? ((termAccesssion == null) ? void 0 : (new Value(0, [OntologyAnnotation.fromString(defaultArg(value, ""), termSource, termAccesssion)]))) : (new Value(0, [OntologyAnnotation.fromString(defaultArg(value, ""), termSource, termAccesssion)]))) : ((termSource == null) ? ((termAccesssion == null) ? ((value_1 = value, (() => {
-            try {
-                return new Value(1, [parse_1(value_1, 511, false, 32)]);
-            }
-            catch (matchValue_1) {
-                try {
-                    return new Value(2, [parse(value_1)]);
-                }
-                catch (matchValue_2) {
-                    return new Value(3, [value_1]);
-                }
-            }
-        })())) : (new Value(0, [OntologyAnnotation.fromString(defaultArg(value, ""), termSource, termAccesssion)]))) : (new Value(0, [OntologyAnnotation.fromString(defaultArg(value, ""), termSource, termAccesssion)])));
+        return (value == null) ? ((termSource == null) ? ((termAccesssion == null) ? void 0 : (new Value(0, [OntologyAnnotation.create(defaultArg(value, ""), termSource, termAccesssion)]))) : (new Value(0, [OntologyAnnotation.create(defaultArg(value, ""), termSource, termAccesssion)]))) : ((termSource == null) ? ((termAccesssion == null) ? ((value_1 = value, Value.fromString(value_1))) : (new Value(0, [OntologyAnnotation.create(defaultArg(value, ""), termSource, termAccesssion)]))) : (new Value(0, [OntologyAnnotation.create(defaultArg(value, ""), termSource, termAccesssion)])));
     }
     static toOptions(value) {
         switch (value.tag) {
@@ -139,6 +132,6 @@ export class Value extends Union {
 }
 
 export function Value_$reflection() {
-    return union_type("ARCtrl.ISA.Value", [], Value, () => [[["Item", OntologyAnnotation_$reflection()]], [["Item", int32_type]], [["Item", float64_type]], [["Item", string_type]]]);
+    return union_type("ARCtrl.Process.Value", [], Value, () => [[["Item", OntologyAnnotation_$reflection()]], [["Item", int32_type]], [["Item", float64_type]], [["Item", string_type]]]);
 }
 

package/Core/Publication.js

@@ -0,0 +1,116 @@
+import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { ResizeArray_map } from "./Helper/Collections.js";
+import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
+import { safeHash } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.16.0/System.Text.js";
+import { printf, toText, join } from "../fable_modules/fable-library-js.4.16.0/String.js";
+import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.16.0/List.js";
+import { length } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { toString } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+
+export class Publication {
+    constructor(pubMedID, doi, authors, title, status, comments) {
+        this._pubMedID = pubMedID;
+        this._doi = doi;
+        this._authors = authors;
+        this._title = title;
+        this._status = status;
+        this._comments = defaultArg(comments, []);
+    }
+    get PubMedID() {
+        const this$ = this;
+        return unwrap(this$._pubMedID);
+    }
+    set PubMedID(pubMedID) {
+        const this$ = this;
+        this$._pubMedID = pubMedID;
+    }
+    get DOI() {
+        const this$ = this;
+        return unwrap(this$._doi);
+    }
+    set DOI(doi) {
+        const this$ = this;
+        this$._doi = doi;
+    }
+    get Authors() {
+        const this$ = this;
+        return unwrap(this$._authors);
+    }
+    set Authors(authors) {
+        const this$ = this;
+        this$._authors = authors;
+    }
+    get Title() {
+        const this$ = this;
+        return unwrap(this$._title);
+    }
+    set Title(title) {
+        const this$ = this;
+        this$._title = title;
+    }
+    get Status() {
+        const this$ = this;
+        return unwrap(this$._status);
+    }
+    set Status(status) {
+        const this$ = this;
+        this$._status = status;
+    }
+    get Comments() {
+        const this$ = this;
+        return this$._comments;
+    }
+    set Comments(comments) {
+        const this$ = this;
+        this$._comments = comments;
+    }
+    static make(pubMedID, doi, authors, title, status, comments) {
+        return new Publication(unwrap(pubMedID), unwrap(doi), unwrap(authors), unwrap(title), unwrap(status), comments);
+    }
+    static create(pubMedID, doi, authors, title, status, comments) {
+        const comments_1 = defaultArg(comments, []);
+        return Publication.make(pubMedID, doi, authors, title, status, comments_1);
+    }
+    static empty() {
+        return Publication.create();
+    }
+    Copy() {
+        const this$ = this;
+        const nextComments = ResizeArray_map((c) => c.Copy(), this$.Comments);
+        const pubMedID = this$.PubMedID;
+        const doi = this$.DOI;
+        const authors = this$.Authors;
+        const title = this$.Title;
+        const status = this$.Status;
+        return Publication.make(pubMedID, doi, authors, title, status, nextComments);
+    }
+    GetHashCode() {
+        const this$ = this;
+        return boxHashArray([boxHashOption(this$.DOI), boxHashOption(this$.Title), boxHashOption(this$.Authors), boxHashOption(this$.PubMedID), boxHashOption(this$.Status), boxHashSeq(this$.Comments)]) | 0;
+    }
+    Equals(obj) {
+        let p;
+        const this$ = this;
+        return (obj instanceof Publication) && ((p = obj, safeHash(this$) === safeHash(p)));
+    }
+    toString() {
+        let option, clo, arg_1;
+        const this$ = this;
+        const sb = StringBuilder_$ctor();
+        StringBuilder__Append_Z721C83C5(sb, "Publication {\n\t");
+        StringBuilder__Append_Z721C83C5(sb, join(",\n\t", map((tupledArg_1) => toText(printf("%s = %A"))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["PubMedID", this$.PubMedID], ["DOI", this$.DOI], ["Authors", this$.Authors], ["Title", this$.Title], ["Status", (option = this$.Status, map_1((clo = toText(printf("%A")), clo), option))], ["Comments", (length(this$.Comments) > 0) ? ((arg_1 = this$.Comments, toText(printf("%A"))(arg_1))) : void 0]])))));
+        StringBuilder__Append_Z721C83C5(sb, "\n}");
+        return toString(sb);
+    }
+}
+
+export function Publication_$reflection() {
+    return class_type("ARCtrl.Publication", void 0, Publication);
+}
+
+export function Publication_$ctor_Z645CED36(pubMedID, doi, authors, title, status, comments) {
+    return new Publication(pubMedID, doi, authors, title, status, comments);
+}
+