@nfdi4plants/arctrl 1.1.0 → 2.0.0-alpha.1

package/fable_modules/project_cracked.json

@@ -1 +1 @@
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package/index.js

@@ -1,13 +1,15 @@
-export { Comment$ } from "./ISA/ISA/JsonTypes/Comment.js";
-export { OntologyAnnotation } from "./ISA/ISA/JsonTypes/OntologyAnnotation.js";
-export { Person } from "./ISA/ISA/JsonTypes/Person.js";
-export { Publication } from "./ISA/ISA/JsonTypes/Publication.js";
-export { IOType, CompositeHeader } from "./ISA/ISA/ArcTypes/CompositeHeader.js";
-export { CompositeCell } from "./ISA/ISA/ArcTypes/CompositeCell.js";
-export { CompositeColumn } from "./ISA/ISA/ArcTypes/CompositeColumn.js";
-export { ArcTable } from "./ISA/ISA/ArcTypes/ArcTable.js";
-export { ArcAssay, ArcStudy, ArcInvestigation } from "./ISA/ISA/ArcTypes/ArcTypes.js";
-export { Template, Organisation } from "./Templates/Template.js";
-export { Templates } from "./Templates/Templates.js";
-export { JsWeb } from "./Templates/Template.Web.js";
+export { Comment$ } from "./Core/Comment.js";
+export { OntologyAnnotation } from "./Core/OntologyAnnotation.js";
+export { Person } from "./Core/Person.js";
+export { Publication } from "./Core/Publication.js";
+export { IOType, CompositeHeader } from "./Core/Table/CompositeHeader.js";
+export { CompositeCell } from "./Core/Table/CompositeCell.js";
+export { CompositeColumn } from "./Core/Table/CompositeColumn.js";
+export { ArcTable } from "./Core/Table/ArcTable.js";
+export { ArcAssay, ArcStudy, ArcInvestigation } from "./Core/ArcTypes.js";
+export { Template, Organisation } from "./Core/Template.js";
+export { Templates } from "./Core/Templates.js";
+export { WebController } from "./Template.Web.js";
 export { ARC } from "./ARC.js";
+export { JsonController } from "./Json.js";
+export { XlsxController } from "./Xlsx.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nfdi4plants/arctrl",
-  "version": "1.1.0+6309e03",
+  "version": "2.0.0-alpha.1",
   "description": "Top level ARC DataModel and API function descriptions.",
   "type": "module",
   "main": "index.js",

package/Contracts/Contracts.ArcTypes.js

@@ -1,268 +0,0 @@
-import { combineMany } from "../FileSystem/Path.js";
-import { equalsWith } from "../fable_modules/fable-library.4.5.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library.4.5.0/Util.js";
-import { unwrap, defaultArg } from "../fable_modules/fable-library.4.5.0/Option.js";
-import { fromFsWorkbook, toFsWorkbook, toLightFsWorkbook } from "../ISA/ISA.Spreadsheet/ArcInvestigation.js";
-import { Contract } from "../Contract/Contract.js";
-import { Assay_fileNameFromIdentifier, Study_fileNameFromIdentifier } from "../ISA/ISA/Identifier.js";
-import { ARCtrl_ISA_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ISA_ArcStudy__ArcStudy_toFsWorkbook_Static_Z2A9662E9 } from "../ISA/ISA.Spreadsheet/ArcStudy.js";
-import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library.4.5.0/Seq.js";
-import { createAssayFolder, createStudyFolder, createStudiesFolder } from "../FileSystemTree.js";
-import { getAssayFolderPath, getStudyFolderPath } from "../Path.js";
-import { fromFsWorkbook as fromFsWorkbook_1, toFsWorkbook as toFsWorkbook_1 } from "../ISA/ISA.Spreadsheet/ArcAssay.js";
-
-export function $007CStudyPath$007C_$007C(input) {
-    let matchResult;
-    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 3)) {
-        if (input[0] === "studies") {
-            if (input[2] === "isa.study.xlsx") {
-                matchResult = 0;
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0: {
-            const anyStudyName = input[1];
-            return combineMany(input);
-        }
-        default:
-            return void 0;
-    }
-}
-
-export function $007CAssayPath$007C_$007C(input) {
-    let matchResult;
-    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 3)) {
-        if (input[0] === "assays") {
-            if (input[2] === "isa.assay.xlsx") {
-                matchResult = 0;
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0: {
-            const anyAssayName = input[1];
-            return combineMany(input);
-        }
-        default:
-            return void 0;
-    }
-}
-
-export function $007CInvestigationPath$007C_$007C(input) {
-    let matchResult;
-    if (!equalsWith((x, y) => (x === y), input, defaultOf()) && (input.length === 1)) {
-        if (input[0] === "isa.investigation.xlsx") {
-            matchResult = 0;
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0:
-            return combineMany(input);
-        default:
-            return void 0;
-    }
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToCreateContract_6FCE9E49(this$, isLight) {
-    const converter = defaultArg(isLight, true) ? (toLightFsWorkbook) : (toFsWorkbook);
-    return Contract.createCreate("isa.investigation.xlsx", "ISA_Investigation", converter(this$));
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(this$, isLight) {
-    const converter = defaultArg(isLight, true) ? (toLightFsWorkbook) : (toFsWorkbook);
-    return Contract.createUpdate("isa.investigation.xlsx", "ISA_Investigation", converter(this$));
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_toCreateContract_Static_6EB1BBBD(inv, isLight) {
-    return ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToCreateContract_6FCE9E49(inv, unwrap(isLight));
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_toUpdateContract_Static_6EB1BBBD(inv, isLight) {
-    return ARCtrl_ISA_ArcInvestigation__ArcInvestigation_ToUpdateContract_6FCE9E49(inv, unwrap(isLight));
-}
-
-export function ARCtrl_ISA_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c) {
-    let matchResult, fsworkbook;
-    if (c.Operation === "READ") {
-        if (c.DTOType != null) {
-            if (c.DTOType === "ISA_Investigation") {
-                if (c.DTO != null) {
-                    matchResult = 0;
-                    fsworkbook = c.DTO;
-                }
-                else {
-                    matchResult = 1;
-                }
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0:
-            return fromFsWorkbook(fsworkbook);
-        default:
-            return void 0;
-    }
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$, WithFolder) {
-    const withFolder = defaultArg(WithFolder, false);
-    const path = Study_fileNameFromIdentifier(this$.Identifier);
-    const c = Contract.createCreate(path, "ISA_Study", ARCtrl_ISA_ArcStudy__ArcStudy_toFsWorkbook_Static_Z2A9662E9(this$));
-    return toArray(delay(() => {
-        let folderFS;
-        return append(withFolder ? ((folderFS = createStudiesFolder([createStudyFolder(this$.Identifier)]), collect((p) => ((p !== path) ? singleton(Contract.createCreate(p, "PlainText")) : empty()), folderFS.ToFilePaths(false)))) : empty(), delay(() => singleton(c)));
-    }));
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_ToUpdateContract(this$) {
-    const path = Study_fileNameFromIdentifier(this$.Identifier);
-    return Contract.createUpdate(path, "ISA_Study", ARCtrl_ISA_ArcStudy__ArcStudy_toFsWorkbook_Static_Z2A9662E9(this$));
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_ToDeleteContract(this$) {
-    const path = getStudyFolderPath(this$.Identifier);
-    return Contract.createDelete(path);
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_toDeleteContract_Static_1B3D5E9B(study) {
-    return ARCtrl_ISA_ArcStudy__ArcStudy_ToDeleteContract(study);
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_toCreateContract_Static_Z12D8504E(study, WithFolder) {
-    return ARCtrl_ISA_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(study, unwrap(WithFolder));
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_toUpdateContract_Static_1B3D5E9B(study) {
-    return ARCtrl_ISA_ArcStudy__ArcStudy_ToUpdateContract(study);
-}
-
-export function ARCtrl_ISA_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c) {
-    let matchResult, fsworkbook;
-    if (c.Operation === "READ") {
-        if (c.DTOType != null) {
-            if (c.DTOType === "ISA_Study") {
-                if (c.DTO != null) {
-                    matchResult = 0;
-                    fsworkbook = c.DTO;
-                }
-                else {
-                    matchResult = 1;
-                }
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0:
-            return ARCtrl_ISA_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fsworkbook);
-        default:
-            return void 0;
-    }
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$, WithFolder) {
-    const withFolder = defaultArg(WithFolder, false);
-    const path = Assay_fileNameFromIdentifier(this$.Identifier);
-    const c = Contract.createCreate(path, "ISA_Assay", toFsWorkbook_1(this$));
-    return toArray(delay(() => {
-        let folderFS;
-        return append(withFolder ? ((folderFS = createAssayFolder(this$.Identifier), collect((p) => ((p !== path) ? singleton(Contract.createCreate(p, "PlainText")) : empty()), folderFS.ToFilePaths(false)))) : empty(), delay(() => singleton(c)));
-    }));
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_ToUpdateContract(this$) {
-    const path = Assay_fileNameFromIdentifier(this$.Identifier);
-    return Contract.createUpdate(path, "ISA_Assay", toFsWorkbook_1(this$));
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_ToDeleteContract(this$) {
-    const path = getAssayFolderPath(this$.Identifier);
-    return Contract.createDelete(path);
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_toDeleteContract_Static_1C75D08D(assay) {
-    return ARCtrl_ISA_ArcAssay__ArcAssay_ToDeleteContract(assay);
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_toCreateContract_Static_Z3B1E839C(assay, WithFolder) {
-    return ARCtrl_ISA_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(assay, unwrap(WithFolder));
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_toUpdateContract_Static_1C75D08D(assay) {
-    return ARCtrl_ISA_ArcAssay__ArcAssay_ToUpdateContract(assay);
-}
-
-export function ARCtrl_ISA_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c) {
-    let matchResult, fsworkbook;
-    if (c.Operation === "READ") {
-        if (c.DTOType != null) {
-            if (c.DTOType === "ISA_Assay") {
-                if (c.DTO != null) {
-                    matchResult = 0;
-                    fsworkbook = c.DTO;
-                }
-                else {
-                    matchResult = 1;
-                }
-            }
-            else {
-                matchResult = 1;
-            }
-        }
-        else {
-            matchResult = 1;
-        }
-    }
-    else {
-        matchResult = 1;
-    }
-    switch (matchResult) {
-        case 0:
-            return fromFsWorkbook_1(fsworkbook);
-        default:
-            return void 0;
-    }
-}
-

package/FileSystemTree.js

@@ -1,51 +0,0 @@
-import { FileSystemTree } from "./FileSystem/FileSystemTree.js";
-import { append } from "./fable_modules/fable-library.4.5.0/Array.js";
-
-export function createGitKeepFile() {
-    return FileSystemTree.createFile(".gitkeep");
-}
-
-export function createReadmeFile() {
-    return FileSystemTree.createFile("README.md");
-}
-
-export function createEmptyFolder(name) {
-    return FileSystemTree.createFolder(name, [createGitKeepFile()]);
-}
-
-export function createAssayFolder(assayName) {
-    const dataset = createEmptyFolder("dataset");
-    const protocols = createEmptyFolder("protocols");
-    const readme = createReadmeFile();
-    const assayFile = FileSystemTree.createFile("isa.assay.xlsx");
-    return FileSystemTree.createFolder(assayName, [dataset, protocols, assayFile, readme]);
-}
-
-export function createStudyFolder(studyName) {
-    const resources = createEmptyFolder("resources");
-    const protocols = createEmptyFolder("protocols");
-    const readme = createReadmeFile();
-    const studyFile = FileSystemTree.createFile("isa.study.xlsx");
-    return FileSystemTree.createFolder(studyName, [resources, protocols, studyFile, readme]);
-}
-
-export function createInvestigationFile() {
-    return FileSystemTree.createFile("isa.investigation.xlsx");
-}
-
-export function createAssaysFolder(assays) {
-    return FileSystemTree.createFolder("assays", append([createGitKeepFile()], assays));
-}
-
-export function createStudiesFolder(studies) {
-    return FileSystemTree.createFolder("studies", append([createGitKeepFile()], studies));
-}
-
-export function createWorkflowsFolder(workflows) {
-    return FileSystemTree.createFolder("workflows", append([createGitKeepFile()], workflows));
-}
-
-export function createRunsFolder(runs) {
-    return FileSystemTree.createFolder("runs", append([createGitKeepFile()], runs));
-}
-