@monoes/monograph 1.5.6 → 1.5.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (596) hide show
  1. package/README.md +25 -9
  2. package/dist/src/mcp-tools/impact.d.ts.map +1 -1
  3. package/dist/src/mcp-tools/impact.js +1 -10
  4. package/dist/src/mcp-tools/impact.js.map +1 -1
  5. package/dist/tsconfig.tsbuildinfo +1 -1
  6. package/package.json +12 -9
  7. package/.monomind/data/ranked-context.json +0 -5
  8. package/.monomind/loops/mastermind-review-1782162423447.json +0 -16
  9. package/.monomind/sessions/session-1777578175215.json +0 -15
  10. package/.monomind/sessions/session-1777823684507.json +0 -15
  11. package/.monomind/sessions/session-1777928944749.json +0 -15
  12. package/.monomind/sessions/session-1778052902210.json +0 -15
  13. package/.monomind/sessions/session-1778056744636.json +0 -15
  14. package/.monomind/sessions/session-1778061077599.json +0 -15
  15. package/.monomind/sessions/session-1778102154764.json +0 -15
  16. package/__tests__/analysis/shape-extractor.test.ts +0 -124
  17. package/__tests__/analysis/surprise-scorer.test.ts +0 -154
  18. package/__tests__/cache/extraction-cache.test.ts +0 -45
  19. package/__tests__/cli/ai-context.test.ts +0 -175
  20. package/__tests__/cli/augment.test.ts +0 -128
  21. package/__tests__/cli/doctor.test.ts +0 -125
  22. package/__tests__/cli/eval-server.test.ts +0 -89
  23. package/__tests__/cli/setup.test.ts +0 -178
  24. package/__tests__/cli/skill-gen.test.ts +0 -280
  25. package/__tests__/export/formats.test.ts +0 -82
  26. package/__tests__/fixtures/sample.c +0 -25
  27. package/__tests__/fixtures/sample.cpp +0 -32
  28. package/__tests__/fixtures/sample.dart +0 -34
  29. package/__tests__/fixtures/sample.kt +0 -30
  30. package/__tests__/fixtures/sample.php +0 -30
  31. package/__tests__/fixtures/sample.py +0 -11
  32. package/__tests__/fixtures/sample.rb +0 -26
  33. package/__tests__/fixtures/sample.swift +0 -42
  34. package/__tests__/fixtures/sample.ts +0 -17
  35. package/__tests__/fixtures/sample.vue +0 -40
  36. package/__tests__/groups/group-search.test.ts +0 -221
  37. package/__tests__/groups/group-sync.test.ts +0 -336
  38. package/__tests__/integration/build-atomicity.test.ts +0 -61
  39. package/__tests__/integration/call-attribution.test.ts +0 -116
  40. package/__tests__/integration/full-pipeline.test.ts +0 -64
  41. package/__tests__/integration/graph-report-freshness.test.ts +0 -53
  42. package/__tests__/integration/incremental-build.test.ts +0 -103
  43. package/__tests__/mcp-resources/resources.test.ts +0 -256
  44. package/__tests__/mcp-tools/api-impact.test.ts +0 -188
  45. package/__tests__/mcp-tools/context.test.ts +0 -130
  46. package/__tests__/mcp-tools/cypher.test.ts +0 -258
  47. package/__tests__/mcp-tools/detect-changes.test.ts +0 -114
  48. package/__tests__/mcp-tools/impact.test.ts +0 -133
  49. package/__tests__/mcp-tools/rename.test.ts +0 -117
  50. package/__tests__/mcp-tools/route-map.test.ts +0 -237
  51. package/__tests__/mcp-tools/shape-check.test.ts +0 -202
  52. package/__tests__/mcp-tools/tool-map.test.ts +0 -135
  53. package/__tests__/parsers/c.test.ts +0 -28
  54. package/__tests__/parsers/cpp.test.ts +0 -28
  55. package/__tests__/parsers/csharp.test.ts +0 -62
  56. package/__tests__/parsers/dart.test.ts +0 -28
  57. package/__tests__/parsers/kotlin.test.ts +0 -28
  58. package/__tests__/parsers/loader.test.ts +0 -14
  59. package/__tests__/parsers/php.test.ts +0 -28
  60. package/__tests__/parsers/python.test.ts +0 -32
  61. package/__tests__/parsers/ruby.test.ts +0 -33
  62. package/__tests__/parsers/swift.test.ts +0 -28
  63. package/__tests__/parsers/typescript.test.ts +0 -45
  64. package/__tests__/parsers/vue.test.ts +0 -28
  65. package/__tests__/pipeline/analysis.test.ts +0 -58
  66. package/__tests__/pipeline/phases/corpus-check.test.ts +0 -26
  67. package/__tests__/pipeline/phases/evidence.test.ts +0 -41
  68. package/__tests__/pipeline/phases/field-access.test.ts +0 -22
  69. package/__tests__/pipeline/phases/leiden.test.ts +0 -72
  70. package/__tests__/pipeline/phases/markdown.test.ts +0 -84
  71. package/__tests__/pipeline/phases/middleware-extractor.test.ts +0 -131
  72. package/__tests__/pipeline/phases/orm.test.ts +0 -379
  73. package/__tests__/pipeline/phases/processes.test.ts +0 -191
  74. package/__tests__/pipeline/phases/routes.test.ts +0 -195
  75. package/__tests__/pipeline/phases/scope-resolution.test.ts +0 -133
  76. package/__tests__/pipeline/phases/tools.test.ts +0 -161
  77. package/__tests__/pipeline/phases/variables.test.ts +0 -30
  78. package/__tests__/pipeline/phases/wildcard-synthesis.test.ts +0 -207
  79. package/__tests__/pipeline/phases.test.ts +0 -41
  80. package/__tests__/pipeline/runner.test.ts +0 -28
  81. package/__tests__/registry/repo-registry.test.ts +0 -127
  82. package/__tests__/reporting/graph-report.suggest.test.ts +0 -36
  83. package/__tests__/reporting/graph-report.test.ts +0 -165
  84. package/__tests__/search/ast-chunker.test.ts +0 -63
  85. package/__tests__/search/rrf.test.ts +0 -95
  86. package/__tests__/security/safe-fetch.test.ts +0 -41
  87. package/__tests__/security/sensitive-files.test.ts +0 -32
  88. package/__tests__/setup.ts +0 -1
  89. package/__tests__/skills/platform-skills.test.ts +0 -63
  90. package/__tests__/staleness/git-staleness.test.ts +0 -107
  91. package/__tests__/storage/db.test.ts +0 -37
  92. package/__tests__/storage/evidence-roundtrip.test.ts +0 -89
  93. package/__tests__/storage/stores.test.ts +0 -165
  94. package/__tests__/types.test.ts +0 -13
  95. package/__tests__/validation/extraction-validator.test.ts +0 -48
  96. package/__tests__/watch/watcher.test.ts +0 -31
  97. package/__tests__/web/analyze-api.test.ts +0 -66
  98. package/__tests__/web/api.test.ts +0 -210
  99. package/__tests__/web/mcp-http.test.ts +0 -67
  100. package/__tests__/web/react-ui.test.ts +0 -43
  101. package/__tests__/wiki/gist-publisher.test.ts +0 -66
  102. package/__tests__/wiki/providers.test.ts +0 -69
  103. package/__tests__/wiki/wiki-generator.test.ts +0 -260
  104. package/src/__tests__/analysis/benchmark.test.ts +0 -59
  105. package/src/__tests__/analysis/cluster-quality.test.ts +0 -106
  106. package/src/__tests__/analysis/corpus-health.test.ts +0 -33
  107. package/src/__tests__/analysis/dependency-health.test.ts +0 -105
  108. package/src/__tests__/analysis/file-classifier.test.ts +0 -50
  109. package/src/__tests__/analysis/node-similarity.test.ts +0 -81
  110. package/src/__tests__/cache/augment-cache.test.ts +0 -55
  111. package/src/__tests__/cli/check-update.test.ts +0 -42
  112. package/src/__tests__/cli/hooks-install.test.ts +0 -56
  113. package/src/__tests__/cli/hooks-marker.test.ts +0 -138
  114. package/src/__tests__/cli/hooks-status.test.ts +0 -42
  115. package/src/__tests__/export/adjacency-matrix.test.ts +0 -116
  116. package/src/__tests__/export/csv.test.ts +0 -39
  117. package/src/__tests__/export/dot.test.ts +0 -86
  118. package/src/__tests__/export/gexf.test.ts +0 -78
  119. package/src/__tests__/export/graphml.test.ts +0 -57
  120. package/src/__tests__/export/mermaid.test.ts +0 -89
  121. package/src/__tests__/graph/betweenness.test.ts +0 -89
  122. package/src/__tests__/graph/cycles.test.ts +0 -131
  123. package/src/__tests__/graph/dead-code.test.ts +0 -174
  124. package/src/__tests__/graph/dfs.test.ts +0 -62
  125. package/src/__tests__/graph/diff-summary.test.ts +0 -83
  126. package/src/__tests__/graph/edge-filter.test.ts +0 -129
  127. package/src/__tests__/graph/import-chain.test.ts +0 -111
  128. package/src/__tests__/graph/merge.test.ts +0 -151
  129. package/src/__tests__/graph/node-search.test.ts +0 -167
  130. package/src/__tests__/graph/normalize-id.test.ts +0 -102
  131. package/src/__tests__/graph/pagerank.test.ts +0 -96
  132. package/src/__tests__/graph/prune.test.ts +0 -110
  133. package/src/__tests__/graph/regex-search.test.ts +0 -166
  134. package/src/__tests__/graph/ripple-impact.test.ts +0 -73
  135. package/src/__tests__/graph/scc.test.ts +0 -85
  136. package/src/__tests__/graph/statistics.test.ts +0 -219
  137. package/src/__tests__/graph/subgraph.test.ts +0 -127
  138. package/src/__tests__/graph/topo-sort.test.ts +0 -110
  139. package/src/__tests__/graph/wcc.test.ts +0 -101
  140. package/src/__tests__/groups/grpc-extractor.test.ts +0 -47
  141. package/src/__tests__/groups/service-boundary.test.ts +0 -86
  142. package/src/__tests__/groups/topic-extractor.test.ts +0 -43
  143. package/src/__tests__/ingest/git-clone.test.ts +0 -128
  144. package/src/__tests__/ingest/query-memory.test.ts +0 -123
  145. package/src/__tests__/ingest/transcribe.test.ts +0 -58
  146. package/src/__tests__/ingest/url-ingest.test.ts +0 -48
  147. package/src/__tests__/mcp-resources/repo-context-resource.test.ts +0 -37
  148. package/src/__tests__/mcp-resources/repos-resource.test.ts +0 -71
  149. package/src/__tests__/mcp-resources/wiki-resource.test.ts +0 -52
  150. package/src/__tests__/mcp-tools/explain.test.ts +0 -46
  151. package/src/__tests__/mcp-tools/graph-query.test.ts +0 -45
  152. package/src/__tests__/mcp-tools/group-sync.test.ts +0 -8
  153. package/src/__tests__/mcp-tools/impact-filtering.test.ts +0 -48
  154. package/src/__tests__/mcp-tools/impact.risk.test.ts +0 -24
  155. package/src/__tests__/mcp-tools/list-repos.test.ts +0 -24
  156. package/src/__tests__/mcp-tools/neighbors.test.ts +0 -48
  157. package/src/__tests__/mcp-tools/query.test.ts +0 -42
  158. package/src/__tests__/parsers/language-parsers.test.ts +0 -52
  159. package/src/__tests__/parsers/named-bindings.test.ts +0 -73
  160. package/src/__tests__/pipeline/cluster-only.test.ts +0 -33
  161. package/src/__tests__/pipeline/phases/bridge-adapters/electron-ipc.test.ts +0 -87
  162. package/src/__tests__/pipeline/phases/bridge-adapters/tauri.test.ts +0 -116
  163. package/src/__tests__/pipeline/phases/bridge-adapters/wails.test.ts +0 -81
  164. package/src/__tests__/pipeline/phases/bridge-resolver.test.ts +0 -110
  165. package/src/__tests__/pipeline/phases/communities.cohesion.test.ts +0 -43
  166. package/src/__tests__/pipeline/phases/community-split.test.ts +0 -30
  167. package/src/__tests__/pipeline/phases/framework-detect.test.ts +0 -65
  168. package/src/__tests__/pipeline/phases/import-resolver.test.ts +0 -64
  169. package/src/__tests__/pipeline/phases/parse-arrow.test.ts +0 -33
  170. package/src/__tests__/pipeline/phases/parse-csharp.test.ts +0 -33
  171. package/src/__tests__/pipeline/phases/scan.monographignore.test.ts +0 -53
  172. package/src/__tests__/pipeline/phases/scan.negation.test.ts +0 -40
  173. package/src/__tests__/pipeline/phases/scope-resolution.go.test.ts +0 -34
  174. package/src/__tests__/pipeline/phases/scope-resolution.java.test.ts +0 -30
  175. package/src/__tests__/pipeline/phases/scope-resolution.rust.test.ts +0 -31
  176. package/src/__tests__/pipeline/phases/suggest-questions.test.ts +0 -46
  177. package/src/__tests__/pipeline/phases/surprises-scoring.test.ts +0 -46
  178. package/src/__tests__/pipeline/phases/variables-phase.test.ts +0 -78
  179. package/src/__tests__/pipeline/phases/wildcard-phase.test.ts +0 -99
  180. package/src/__tests__/pipeline/runner.parallel.test.ts +0 -78
  181. package/src/__tests__/reporting/graph-report-confidence.test.ts +0 -43
  182. package/src/__tests__/reporting/graph-report-gaps.test.ts +0 -41
  183. package/src/__tests__/scope-resolution/call-sites.test.ts +0 -89
  184. package/src/__tests__/scope-resolution/evidence-weights.test.ts +0 -49
  185. package/src/__tests__/search/diacritic.test.ts +0 -23
  186. package/src/__tests__/security/safe-fetch.test.ts +0 -125
  187. package/src/__tests__/skills/platform-skills.extra.test.ts +0 -36
  188. package/src/__tests__/web/api.clusters.test.ts +0 -65
  189. package/src/__tests__/web/api.file.test.ts +0 -44
  190. package/src/__tests__/web/api.grep.test.ts +0 -47
  191. package/src/__tests__/web/api.info.test.ts +0 -18
  192. package/src/__tests__/web/api.jobs.test.ts +0 -47
  193. package/src/__tests__/web/api.progress.test.ts +0 -25
  194. package/src/__tests__/web/api.stream.test.ts +0 -35
  195. package/src/__tests__/wiki/providers-reasoning.test.ts +0 -46
  196. package/src/__tests__/wiki/wiki-review-mode.test.ts +0 -22
  197. package/src/analysis/benchmark.ts +0 -132
  198. package/src/analysis/changed-files.ts +0 -73
  199. package/src/analysis/changed-workspaces.ts +0 -94
  200. package/src/analysis/churn-cache.ts +0 -179
  201. package/src/analysis/churn-trend.ts +0 -57
  202. package/src/analysis/churn.ts +0 -263
  203. package/src/analysis/cluster-quality.ts +0 -142
  204. package/src/analysis/combined.ts +0 -41
  205. package/src/analysis/corpus-health.ts +0 -41
  206. package/src/analysis/coverage-gaps.ts +0 -246
  207. package/src/analysis/dep-classification.ts +0 -167
  208. package/src/analysis/dependency-health.ts +0 -146
  209. package/src/analysis/duplicate-exports.ts +0 -110
  210. package/src/analysis/fallow-suppression.ts +0 -98
  211. package/src/analysis/feature-flags-config.ts +0 -47
  212. package/src/analysis/feature-flags.ts +0 -223
  213. package/src/analysis/file-classifier.ts +0 -87
  214. package/src/analysis/git-changed-files.ts +0 -62
  215. package/src/analysis/health-baseline.ts +0 -80
  216. package/src/analysis/issue-filters.ts +0 -56
  217. package/src/analysis/list.ts +0 -74
  218. package/src/analysis/node-similarity.ts +0 -115
  219. package/src/analysis/private-type-leaks.ts +0 -119
  220. package/src/analysis/progress.ts +0 -43
  221. package/src/analysis/project-state.ts +0 -95
  222. package/src/analysis/regression-config.ts +0 -36
  223. package/src/analysis/rule-overrides.ts +0 -81
  224. package/src/analysis/scripts.ts +0 -95
  225. package/src/analysis/shape-extractor.ts +0 -202
  226. package/src/analysis/since-duration.ts +0 -42
  227. package/src/analysis/suppression-context.ts +0 -95
  228. package/src/analysis/suppressions.ts +0 -80
  229. package/src/analysis/surprise-scorer.ts +0 -74
  230. package/src/analysis/targets.ts +0 -237
  231. package/src/analysis/unused-class-members.ts +0 -79
  232. package/src/analysis/workspace-filter.ts +0 -89
  233. package/src/analyze/boundary-analysis.ts +0 -129
  234. package/src/analyze/predicates/file.ts +0 -86
  235. package/src/analyze/predicates/import.ts +0 -90
  236. package/src/analyze/predicates/lifecycle.ts +0 -55
  237. package/src/analyze/unused-deps.ts +0 -70
  238. package/src/analyze/unused-exports.ts +0 -145
  239. package/src/analyze/unused-files.ts +0 -46
  240. package/src/api/production-override.ts +0 -63
  241. package/src/api/programmatic.ts +0 -118
  242. package/src/audit.ts +0 -234
  243. package/src/cache/augment-cache.ts +0 -63
  244. package/src/cache/extraction-cache.ts +0 -141
  245. package/src/check/filtering.ts +0 -78
  246. package/src/check/index.ts +0 -99
  247. package/src/check/output.ts +0 -79
  248. package/src/check/rules.ts +0 -61
  249. package/src/ci-template.ts +0 -84
  250. package/src/claude-cli.ts +0 -59
  251. package/src/cli/ai-context.ts +0 -193
  252. package/src/cli/augment.ts +0 -114
  253. package/src/cli/check-update.ts +0 -40
  254. package/src/cli/doctor.ts +0 -182
  255. package/src/cli/eval-server.ts +0 -126
  256. package/src/cli/hooks-install.ts +0 -202
  257. package/src/cli/setup.ts +0 -197
  258. package/src/cli/skill-gen.ts +0 -347
  259. package/src/commands/flags.ts +0 -72
  260. package/src/config/boundary-config.ts +0 -183
  261. package/src/config/cli-schema.ts +0 -81
  262. package/src/config/config-parsing.ts +0 -102
  263. package/src/config/duplicates-config.ts +0 -62
  264. package/src/config/external-plugin.ts +0 -77
  265. package/src/config/health-config.ts +0 -42
  266. package/src/config/ignore-exports-used-in-file.ts +0 -46
  267. package/src/config/migration-types.ts +0 -73
  268. package/src/config/output-format.ts +0 -24
  269. package/src/config/plugins/builtin.ts +0 -411
  270. package/src/config/plugins/registry.ts +0 -77
  271. package/src/config/plugins/types.ts +0 -14
  272. package/src/config/resolution.ts +0 -102
  273. package/src/config/rules.ts +0 -70
  274. package/src/config/schema-gen.ts +0 -115
  275. package/src/config/types.ts +0 -149
  276. package/src/config/used-class-members.ts +0 -53
  277. package/src/config/validate.ts +0 -108
  278. package/src/config/workspace.ts +0 -137
  279. package/src/coverage/cloud-client.ts +0 -111
  280. package/src/coverage/upload-inventory.ts +0 -84
  281. package/src/coverage/upload-source-maps.ts +0 -97
  282. package/src/discover/entry-points.ts +0 -51
  283. package/src/discover/infrastructure-entries.ts +0 -175
  284. package/src/duplicates/detect/concatenation.ts +0 -37
  285. package/src/duplicates/detect/extraction.ts +0 -107
  286. package/src/duplicates/detect/filtering.ts +0 -112
  287. package/src/duplicates/detect/lcp.ts +0 -27
  288. package/src/duplicates/detect/ranking.ts +0 -16
  289. package/src/duplicates/detect/statistics.ts +0 -69
  290. package/src/duplicates/detect/suffix-array.ts +0 -88
  291. package/src/duplicates/families.ts +0 -95
  292. package/src/duplicates/normalize.ts +0 -58
  293. package/src/duplicates/shingle-filter.ts +0 -37
  294. package/src/duplicates/token-types.ts +0 -62
  295. package/src/duplicates/tokenize/index.ts +0 -104
  296. package/src/error/fallow-error.ts +0 -94
  297. package/src/error.ts +0 -47
  298. package/src/export/adjacency-matrix.ts +0 -127
  299. package/src/export/analysis-json.ts +0 -87
  300. package/src/export/badge.ts +0 -105
  301. package/src/export/canvas.ts +0 -42
  302. package/src/export/codeclimate.ts +0 -201
  303. package/src/export/compact-health.ts +0 -119
  304. package/src/export/compact.ts +0 -83
  305. package/src/export/csv.ts +0 -33
  306. package/src/export/cypher.ts +0 -33
  307. package/src/export/dot.ts +0 -52
  308. package/src/export/gexf.ts +0 -59
  309. package/src/export/graphml.ts +0 -50
  310. package/src/export/html.ts +0 -548
  311. package/src/export/index.ts +0 -9
  312. package/src/export/json.ts +0 -36
  313. package/src/export/markdown.ts +0 -290
  314. package/src/export/mermaid.ts +0 -100
  315. package/src/export/obsidian.ts +0 -44
  316. package/src/export/sarif.ts +0 -245
  317. package/src/export/svg.ts +0 -68
  318. package/src/fix/deps.ts +0 -70
  319. package/src/fix/enum-members.ts +0 -103
  320. package/src/fix/export-surgery.ts +0 -197
  321. package/src/fix/exports.ts +0 -93
  322. package/src/fix/orchestrator.ts +0 -67
  323. package/src/graph/analyzer.ts +0 -69
  324. package/src/graph/author-analytics.ts +0 -217
  325. package/src/graph/baseline.ts +0 -432
  326. package/src/graph/clone-families.ts +0 -132
  327. package/src/graph/codeowners-extended.ts +0 -114
  328. package/src/graph/codeowners-gitlab.ts +0 -150
  329. package/src/graph/codeowners.ts +0 -217
  330. package/src/graph/complexity.ts +0 -200
  331. package/src/graph/cross-reference-findings.ts +0 -85
  332. package/src/graph/cross-reference.ts +0 -139
  333. package/src/graph/cycle-detection.ts +0 -311
  334. package/src/graph/cycles.ts +0 -222
  335. package/src/graph/dead-code.ts +0 -128
  336. package/src/graph/dependency-closure.ts +0 -126
  337. package/src/graph/dfs.ts +0 -118
  338. package/src/graph/diff.ts +0 -92
  339. package/src/graph/duplication-stats.ts +0 -79
  340. package/src/graph/edge-filter.ts +0 -117
  341. package/src/graph/explain.ts +0 -133
  342. package/src/graph/external-style-usage.ts +0 -81
  343. package/src/graph/health-score.ts +0 -179
  344. package/src/graph/hotspots.ts +0 -219
  345. package/src/graph/import-chain.ts +0 -148
  346. package/src/graph/loader.ts +0 -44
  347. package/src/graph/maintainability.ts +0 -156
  348. package/src/graph/merge.ts +0 -174
  349. package/src/graph/mirrored-dirs.ts +0 -202
  350. package/src/graph/narrowing.ts +0 -92
  351. package/src/graph/node-search.ts +0 -201
  352. package/src/graph/node-types.ts +0 -67
  353. package/src/graph/normalize-id.ts +0 -138
  354. package/src/graph/pagerank.ts +0 -165
  355. package/src/graph/prune.ts +0 -95
  356. package/src/graph/re-exports/propagate.ts +0 -95
  357. package/src/graph/reachability.ts +0 -99
  358. package/src/graph/regex-search.ts +0 -232
  359. package/src/graph/regression.ts +0 -199
  360. package/src/graph/resolve/discover-types.ts +0 -45
  361. package/src/graph/resolve/dynamic-imports.ts +0 -102
  362. package/src/graph/resolve/fallbacks.ts +0 -79
  363. package/src/graph/resolve/index.ts +0 -68
  364. package/src/graph/resolve/path-info.ts +0 -41
  365. package/src/graph/resolve/re-exports.ts +0 -14
  366. package/src/graph/resolve/react-native.ts +0 -27
  367. package/src/graph/resolve/require-imports.ts +0 -18
  368. package/src/graph/resolve/specifier.ts +0 -120
  369. package/src/graph/resolve/static-imports.ts +0 -14
  370. package/src/graph/resolve/types.ts +0 -108
  371. package/src/graph/resolve/upgrades.ts +0 -32
  372. package/src/graph/ripple-impact.ts +0 -131
  373. package/src/graph/risk-profile.ts +0 -179
  374. package/src/graph/statistics.ts +0 -165
  375. package/src/graph/stats.ts +0 -157
  376. package/src/graph/subgraph.ts +0 -162
  377. package/src/graph/topo-sort.ts +0 -171
  378. package/src/graph/wcc.ts +0 -187
  379. package/src/groups/contract-bridge.ts +0 -103
  380. package/src/groups/contract-registry.ts +0 -263
  381. package/src/groups/group-config.ts +0 -108
  382. package/src/groups/group-search.ts +0 -139
  383. package/src/groups/group-sync.ts +0 -82
  384. package/src/groups/grpc-extractor.ts +0 -64
  385. package/src/groups/service-boundary.ts +0 -119
  386. package/src/groups/topic-extractor.ts +0 -90
  387. package/src/health/analysis-counts-snapshot.ts +0 -57
  388. package/src/health/analysis-counts.ts +0 -70
  389. package/src/health/complexity-findings.ts +0 -115
  390. package/src/health/distribution-thresholds.ts +0 -54
  391. package/src/health/grouping.ts +0 -138
  392. package/src/health/health-grouping.ts +0 -86
  393. package/src/health/health-report-types.ts +0 -165
  394. package/src/health/health-report.ts +0 -81
  395. package/src/health/health-score.ts +0 -65
  396. package/src/health/hotspot-utils.ts +0 -55
  397. package/src/health/hotspots.ts +0 -104
  398. package/src/health/large-functions.ts +0 -34
  399. package/src/health/ownership-metrics.ts +0 -61
  400. package/src/health/ownership-risk.ts +0 -98
  401. package/src/health/ownership.ts +0 -174
  402. package/src/health/quality-gate.ts +0 -57
  403. package/src/health/risk-profile.ts +0 -39
  404. package/src/health/runtime-coverage-report.ts +0 -101
  405. package/src/health/runtime-coverage.ts +0 -71
  406. package/src/health/scores.ts +0 -72
  407. package/src/health/scoring-types.ts +0 -48
  408. package/src/health/target-thresholds.ts +0 -92
  409. package/src/health/target-types.ts +0 -54
  410. package/src/health/targets.ts +0 -151
  411. package/src/health/timings.ts +0 -86
  412. package/src/health/trend-types.ts +0 -57
  413. package/src/health/trends.ts +0 -86
  414. package/src/health/vital-signs-compute.ts +0 -108
  415. package/src/health/vital-signs-snapshot.ts +0 -72
  416. package/src/health/vital-signs.ts +0 -101
  417. package/src/index.ts +0 -111
  418. package/src/ingest/git-clone.ts +0 -246
  419. package/src/ingest/query-memory.ts +0 -132
  420. package/src/ingest/transcribe.ts +0 -254
  421. package/src/ingest/url-ingest.ts +0 -87
  422. package/src/init/agent-hooks.ts +0 -86
  423. package/src/init/git-hooks.ts +0 -71
  424. package/src/init/project-detection.ts +0 -105
  425. package/src/license/manager.ts +0 -120
  426. package/src/lsp/code-actions.ts +0 -127
  427. package/src/lsp/code-lens.ts +0 -56
  428. package/src/lsp/diagnostics-ext.ts +0 -150
  429. package/src/lsp/diagnostics-push.ts +0 -103
  430. package/src/lsp/diagnostics.ts +0 -98
  431. package/src/lsp/hover.ts +0 -64
  432. package/src/lsp/server.ts +0 -254
  433. package/src/mcp/params.ts +0 -201
  434. package/src/mcp/resources.ts +0 -124
  435. package/src/mcp/tool-builders.ts +0 -203
  436. package/src/mcp-resources/communities-resource.ts +0 -72
  437. package/src/mcp-resources/graph-resource.ts +0 -14
  438. package/src/mcp-resources/index.ts +0 -9
  439. package/src/mcp-resources/named-cluster-resource.ts +0 -35
  440. package/src/mcp-resources/named-process-resource.ts +0 -26
  441. package/src/mcp-resources/processes-resource.ts +0 -67
  442. package/src/mcp-resources/repo-context-resource.ts +0 -36
  443. package/src/mcp-resources/repos-resource.ts +0 -21
  444. package/src/mcp-resources/schema-resource.ts +0 -46
  445. package/src/mcp-resources/wiki-resource.ts +0 -23
  446. package/src/mcp-tools/api-impact.ts +0 -181
  447. package/src/mcp-tools/context.ts +0 -111
  448. package/src/mcp-tools/cypher.ts +0 -29
  449. package/src/mcp-tools/detect-changes.ts +0 -116
  450. package/src/mcp-tools/explain.ts +0 -65
  451. package/src/mcp-tools/graph-query.ts +0 -128
  452. package/src/mcp-tools/group-list.ts +0 -88
  453. package/src/mcp-tools/group-query.ts +0 -26
  454. package/src/mcp-tools/group-sync.ts +0 -32
  455. package/src/mcp-tools/impact.ts +0 -202
  456. package/src/mcp-tools/index.ts +0 -21
  457. package/src/mcp-tools/list-repos.ts +0 -38
  458. package/src/mcp-tools/neighbors.ts +0 -80
  459. package/src/mcp-tools/query.ts +0 -86
  460. package/src/mcp-tools/rename.ts +0 -118
  461. package/src/mcp-tools/route-map.ts +0 -98
  462. package/src/mcp-tools/serve.ts +0 -41
  463. package/src/mcp-tools/shape-check.ts +0 -182
  464. package/src/mcp-tools/staleness.ts +0 -13
  465. package/src/mcp-tools/tool-map.ts +0 -66
  466. package/src/mcp-tools/wiki-build.ts +0 -37
  467. package/src/mcp-tools/wiki.ts +0 -28
  468. package/src/migrate/jscpd.ts +0 -78
  469. package/src/migrate/jsonc-gen.ts +0 -38
  470. package/src/migrate/knip.ts +0 -126
  471. package/src/migrate/toml-gen.ts +0 -48
  472. package/src/parsers/c.ts +0 -31
  473. package/src/parsers/cpp.ts +0 -29
  474. package/src/parsers/csharp.ts +0 -43
  475. package/src/parsers/dart.ts +0 -39
  476. package/src/parsers/extractor.ts +0 -202
  477. package/src/parsers/go.ts +0 -27
  478. package/src/parsers/java.ts +0 -27
  479. package/src/parsers/kotlin.ts +0 -36
  480. package/src/parsers/language-config.ts +0 -28
  481. package/src/parsers/language-parsers.ts +0 -120
  482. package/src/parsers/loader.ts +0 -149
  483. package/src/parsers/named-bindings.ts +0 -63
  484. package/src/parsers/php.ts +0 -37
  485. package/src/parsers/python.ts +0 -26
  486. package/src/parsers/ruby.ts +0 -39
  487. package/src/parsers/rust.ts +0 -25
  488. package/src/parsers/swift.ts +0 -28
  489. package/src/parsers/typescript.ts +0 -41
  490. package/src/parsers/vue.ts +0 -79
  491. package/src/pipeline/cluster-only.ts +0 -64
  492. package/src/pipeline/effort.ts +0 -50
  493. package/src/pipeline/orchestrator.ts +0 -384
  494. package/src/pipeline/phases/boundary.ts +0 -151
  495. package/src/pipeline/phases/bridge-adapters/electron-ipc.ts +0 -91
  496. package/src/pipeline/phases/bridge-adapters/registry.ts +0 -14
  497. package/src/pipeline/phases/bridge-adapters/tauri.ts +0 -103
  498. package/src/pipeline/phases/bridge-adapters/types.ts +0 -31
  499. package/src/pipeline/phases/bridge-adapters/wails.ts +0 -33
  500. package/src/pipeline/phases/bridge-resolver.ts +0 -77
  501. package/src/pipeline/phases/call-site-extractors.ts +0 -177
  502. package/src/pipeline/phases/communities.ts +0 -183
  503. package/src/pipeline/phases/contextual-proximity.ts +0 -88
  504. package/src/pipeline/phases/cross-file.ts +0 -116
  505. package/src/pipeline/phases/docs-parse.ts +0 -307
  506. package/src/pipeline/phases/evidence.ts +0 -9
  507. package/src/pipeline/phases/field-access.ts +0 -49
  508. package/src/pipeline/phases/framework-detect.ts +0 -109
  509. package/src/pipeline/phases/god-nodes.ts +0 -163
  510. package/src/pipeline/phases/import-resolver.ts +0 -114
  511. package/src/pipeline/phases/leiden.ts +0 -77
  512. package/src/pipeline/phases/llm-extract.ts +0 -178
  513. package/src/pipeline/phases/markdown.ts +0 -121
  514. package/src/pipeline/phases/middleware-extractor.ts +0 -127
  515. package/src/pipeline/phases/module-resolution.ts +0 -294
  516. package/src/pipeline/phases/mro.ts +0 -56
  517. package/src/pipeline/phases/orm.ts +0 -503
  518. package/src/pipeline/phases/parse.ts +0 -222
  519. package/src/pipeline/phases/pdf-parse.ts +0 -133
  520. package/src/pipeline/phases/processes.ts +0 -249
  521. package/src/pipeline/phases/re-export-propagation.ts +0 -160
  522. package/src/pipeline/phases/reachability.ts +0 -156
  523. package/src/pipeline/phases/routes.ts +0 -350
  524. package/src/pipeline/phases/scan.ts +0 -133
  525. package/src/pipeline/phases/scope-resolution.ts +0 -442
  526. package/src/pipeline/phases/structure.ts +0 -68
  527. package/src/pipeline/phases/suggest.ts +0 -92
  528. package/src/pipeline/phases/surprises.ts +0 -83
  529. package/src/pipeline/phases/tools.ts +0 -180
  530. package/src/pipeline/phases/variables-phase.ts +0 -37
  531. package/src/pipeline/phases/variables.ts +0 -67
  532. package/src/pipeline/phases/wildcard-phase.ts +0 -50
  533. package/src/pipeline/phases/wildcard-synthesis.ts +0 -214
  534. package/src/pipeline/progress.ts +0 -58
  535. package/src/pipeline/runner.ts +0 -88
  536. package/src/pipeline/types.ts +0 -41
  537. package/src/query/cypher-parser.ts +0 -450
  538. package/src/registry/repo-registry.ts +0 -125
  539. package/src/regression/baseline-deltas.ts +0 -215
  540. package/src/regression/baseline.ts +0 -76
  541. package/src/regression/counts.ts +0 -87
  542. package/src/regression/outcome.ts +0 -78
  543. package/src/regression/tolerance.ts +0 -35
  544. package/src/report/attributed-duplication.ts +0 -112
  545. package/src/report/badge-svg.ts +0 -100
  546. package/src/report/cross-ref-human.ts +0 -50
  547. package/src/report/duplication-grouping.ts +0 -74
  548. package/src/report/grouping.ts +0 -137
  549. package/src/report/human-check.ts +0 -291
  550. package/src/report/human-dupes.ts +0 -142
  551. package/src/report/human-health.ts +0 -195
  552. package/src/report/human.ts +0 -120
  553. package/src/report/json-actions.ts +0 -91
  554. package/src/report/json-builders.ts +0 -70
  555. package/src/report/json-schema.ts +0 -75
  556. package/src/report/number-format.ts +0 -91
  557. package/src/report/output-grouped.ts +0 -102
  558. package/src/report/pipeline-perf.ts +0 -56
  559. package/src/report/trace-human.ts +0 -127
  560. package/src/reporting/graph-report.ts +0 -431
  561. package/src/results/fallow-results.ts +0 -152
  562. package/src/results/types.ts +0 -149
  563. package/src/scope-resolution/evidence-weights.ts +0 -41
  564. package/src/search/ast-chunker.ts +0 -206
  565. package/src/search/diacritic.ts +0 -7
  566. package/src/search/hybrid-query.ts +0 -65
  567. package/src/search/rrf.ts +0 -51
  568. package/src/security/safe-fetch.ts +0 -113
  569. package/src/security/sensitive-files.ts +0 -24
  570. package/src/skills/platform-skills.ts +0 -233
  571. package/src/staleness/git-staleness.ts +0 -66
  572. package/src/storage/db.ts +0 -110
  573. package/src/storage/edge-store.ts +0 -103
  574. package/src/storage/file-cache.ts +0 -78
  575. package/src/storage/fts-store.ts +0 -385
  576. package/src/storage/node-store.ts +0 -209
  577. package/src/storage/schema.ts +0 -171
  578. package/src/storage/suppressions.ts +0 -145
  579. package/src/storage/unlinked-refs.ts +0 -117
  580. package/src/types.ts +0 -197
  581. package/src/validation/extraction-validator.ts +0 -54
  582. package/src/watch/watcher.ts +0 -160
  583. package/src/web/analyze-api.ts +0 -146
  584. package/src/web/api.ts +0 -584
  585. package/src/web/async-jobs.ts +0 -109
  586. package/src/web/mcp-http.ts +0 -227
  587. package/src/web/react-ui.ts +0 -78
  588. package/src/web/server.ts +0 -90
  589. package/src/web/ui/index.html +0 -204
  590. package/src/wiki/gist-publisher.ts +0 -76
  591. package/src/wiki/prompt-builder.ts +0 -35
  592. package/src/wiki/providers.ts +0 -134
  593. package/src/wiki/wiki-generator.ts +0 -223
  594. package/src/wiki/wiki-store.ts +0 -49
  595. package/tsconfig.json +0 -11
  596. package/vitest.config.ts +0 -20
@@ -1,246 +0,0 @@
1
- import type { MonographDb } from '../storage/db.js';
2
-
3
- export interface UntestedFile {
4
- nodeId: string;
5
- filePath: string;
6
- reachabilityRole: string; // 'runtime'
7
- inDegree: number; // from runtime files
8
- reason: string; // e.g. 'No test imports this file'
9
- }
10
-
11
- export interface UntestedExport {
12
- nodeId: string;
13
- name: string;
14
- filePath: string | null;
15
- startLine: number | null;
16
- exportType: string; // label
17
- }
18
-
19
- export interface CoverageGapsResult {
20
- untestedFiles: UntestedFile[];
21
- untestedExports: UntestedExport[];
22
- fileCoveragePct: number; // (runtime files reachable by tests) / (total runtime files) * 100
23
- exportCoveragePct: number;
24
- summary: string;
25
- }
26
-
27
- interface FileRow {
28
- id: string;
29
- file_path: string;
30
- }
31
-
32
- interface ImportEdgeRow {
33
- source_id: string;
34
- target_id: string;
35
- }
36
-
37
- interface ExportRow {
38
- id: string;
39
- name: string;
40
- file_path: string | null;
41
- start_line: number | null;
42
- label: string;
43
- }
44
-
45
- interface InDegreeRow {
46
- target_id: string;
47
- cnt: number;
48
- }
49
-
50
- export function computeCoverageGaps(db: MonographDb): CoverageGapsResult {
51
- // Runtime-reachable files
52
- const runtimeFiles = db.prepare(
53
- `SELECT id, file_path FROM nodes
54
- WHERE label = 'File'
55
- AND json_extract(properties, '$.reachabilityRole') = 'runtime'`
56
- ).all() as FileRow[];
57
-
58
- // Test entry points
59
- const testFiles = db.prepare(
60
- `SELECT id, file_path FROM nodes
61
- WHERE label = 'File'
62
- AND json_extract(properties, '$.reachabilityRole') = 'test'`
63
- ).all() as FileRow[];
64
-
65
- // All IMPORTS edges between files for BFS
66
- const allImportEdges = db.prepare(
67
- `SELECT e.source_id, e.target_id
68
- FROM edges e
69
- WHERE e.relation IN ('IMPORTS', 'RE_EXPORTS')
70
- AND e.source_id IN (SELECT id FROM nodes WHERE label = 'File')
71
- AND e.target_id IN (SELECT id FROM nodes WHERE label = 'File')`
72
- ).all() as ImportEdgeRow[];
73
-
74
- // Build forward adjacency for BFS
75
- const forwardAdj = new Map<string, string[]>();
76
- for (const edge of allImportEdges) {
77
- let list = forwardAdj.get(edge.source_id);
78
- if (!list) {
79
- list = [];
80
- forwardAdj.set(edge.source_id, list);
81
- }
82
- list.push(edge.target_id);
83
- }
84
-
85
- // BFS from test entry points
86
- const testReachable = new Set<string>();
87
- const queue: string[] = [];
88
- for (const tf of testFiles) {
89
- if (!testReachable.has(tf.id)) {
90
- testReachable.add(tf.id);
91
- queue.push(tf.id);
92
- }
93
- }
94
-
95
- let head = 0;
96
- while (head < queue.length) {
97
- const current = queue[head++];
98
- const neighbors = forwardAdj.get(current) ?? [];
99
- for (const neighbor of neighbors) {
100
- if (!testReachable.has(neighbor)) {
101
- testReachable.add(neighbor);
102
- queue.push(neighbor);
103
- }
104
- }
105
- }
106
-
107
- // Compute in-degree from runtime files only (not test files) so fan-in reflects
108
- // real dependency weight, not test coverage depth.
109
- const runtimeFileIdSet = new Set(runtimeFiles.map(rf => rf.id));
110
- const inDegreeMap = new Map<string, number>();
111
- for (const edge of allImportEdges) {
112
- if (!runtimeFileIdSet.has(edge.source_id)) continue;
113
- const current = inDegreeMap.get(edge.target_id) ?? 0;
114
- inDegreeMap.set(edge.target_id, current + 1);
115
- }
116
-
117
- // Untested files = runtime files NOT in the test-reachable set
118
- const untestedFiles: UntestedFile[] = [];
119
- for (const rf of runtimeFiles) {
120
- if (!testReachable.has(rf.id)) {
121
- untestedFiles.push({
122
- nodeId: rf.id,
123
- filePath: rf.file_path,
124
- reachabilityRole: 'runtime',
125
- inDegree: inDegreeMap.get(rf.id) ?? 0,
126
- reason: 'No test imports this file',
127
- });
128
- }
129
- }
130
-
131
- // All exported symbols
132
- const allExportedRows = db.prepare(
133
- `SELECT n.id, n.name, n.file_path, n.start_line, n.label
134
- FROM nodes n
135
- WHERE n.is_exported = 1
136
- AND n.label IN ('Function','Class','Method','Interface','Const','TypeAlias','Enum','Variable')`
137
- ).all() as ExportRow[];
138
-
139
- // Runtime file IDs set for quick lookup
140
- const runtimeFileIds = new Set(runtimeFiles.map(rf => rf.id));
141
-
142
- // Map file_path -> file node id for runtime files
143
- const runtimeFilePathToId = new Map<string, string>();
144
- for (const rf of runtimeFiles) {
145
- runtimeFilePathToId.set(rf.file_path, rf.id);
146
- }
147
-
148
- // Determine which file a symbol belongs to (by file_path)
149
- const testedRuntimeFileIds = new Set<string>();
150
- for (const rf of runtimeFiles) {
151
- if (testReachable.has(rf.id)) {
152
- testedRuntimeFileIds.add(rf.id);
153
- }
154
- }
155
-
156
- const untestedExports: UntestedExport[] = [];
157
- let totalRuntimeExports = 0;
158
- let testedRuntimeExports = 0;
159
-
160
- for (const exp of allExportedRows) {
161
- if (!exp.file_path) continue;
162
- const fileId = runtimeFilePathToId.get(exp.file_path);
163
- if (!fileId) continue; // not a runtime file
164
-
165
- totalRuntimeExports++;
166
- if (testedRuntimeFileIds.has(fileId)) {
167
- testedRuntimeExports++;
168
- } else {
169
- untestedExports.push({
170
- nodeId: exp.id,
171
- name: exp.name,
172
- filePath: exp.file_path,
173
- startLine: exp.start_line ?? null,
174
- exportType: exp.label,
175
- });
176
- }
177
- }
178
-
179
- const totalRuntimeFiles = runtimeFiles.length;
180
- const testedRuntimeFiles = runtimeFiles.filter(rf => testReachable.has(rf.id)).length;
181
-
182
- const fileCoveragePct = totalRuntimeFiles > 0
183
- ? (testedRuntimeFiles / totalRuntimeFiles) * 100
184
- : 100;
185
-
186
- const exportCoveragePct = totalRuntimeExports > 0
187
- ? (testedRuntimeExports / totalRuntimeExports) * 100
188
- : 100;
189
-
190
- const summary = [
191
- `${testedRuntimeFiles}/${totalRuntimeFiles} runtime files reachable by tests`,
192
- `(${fileCoveragePct.toFixed(1)}% file coverage,`,
193
- `${exportCoveragePct.toFixed(1)}% export coverage).`,
194
- untestedFiles.length > 0
195
- ? `${untestedFiles.length} untested file(s) found.`
196
- : 'All runtime files are test-reachable.',
197
- ].join(' ');
198
-
199
- return {
200
- untestedFiles,
201
- untestedExports,
202
- fileCoveragePct,
203
- exportCoveragePct,
204
- summary,
205
- };
206
- }
207
-
208
- /** Format CoverageGapsResult as structured text with file:line hints for LLM navigation. */
209
- export function formatCoverageGaps(result: CoverageGapsResult, topN = 20): string {
210
- const lines: string[] = [result.summary, ''];
211
-
212
- if (result.untestedFiles.length > 0) {
213
- // Sort untested files by inDegree descending — highest-impact first
214
- const sorted = [...result.untestedFiles].sort((a, b) => b.inDegree - a.inDegree);
215
- const shown = sorted.slice(0, topN);
216
- lines.push(`Top untested files by import-count (${shown.length}/${result.untestedFiles.length} shown):`);
217
- for (const f of shown) {
218
- lines.push(` ${f.filePath} in-degree:${f.inDegree}`);
219
- }
220
- lines.push('');
221
- }
222
-
223
- if (result.untestedExports.length > 0) {
224
- // Group untested exports by file
225
- const byFile = new Map<string, UntestedExport[]>();
226
- for (const exp of result.untestedExports) {
227
- const key = exp.filePath ?? '(unknown)';
228
- let group = byFile.get(key);
229
- if (!group) { group = []; byFile.set(key, group); }
230
- group.push(exp);
231
- }
232
-
233
- lines.push(`Untested exported symbols (${result.untestedExports.length}) grouped by file:`);
234
- for (const [filePath, exports] of byFile) {
235
- lines.push(` ${filePath}`);
236
- for (const exp of exports) {
237
- const ref = exp.startLine != null ? `${filePath}:${exp.startLine}` : filePath;
238
- lines.push(` ${exp.exportType} ${exp.name} (${ref})`);
239
- }
240
- }
241
- lines.push('');
242
- }
243
-
244
- lines.push('Fix: add tests importing the untested files, or mark files as non-runtime if they are build artifacts.');
245
- return lines.join('\n').trimEnd();
246
- }
@@ -1,167 +0,0 @@
1
- import type { MonographDb } from '../storage/db.js';
2
-
3
- export interface PackageDepClassification {
4
- packageName: string;
5
- usedAsValue: boolean; // has any non-type-only import
6
- usedAsTypeOnly: boolean; // has any type-only import
7
- recommendation: 'keep-as-dep' | 'move-to-devdeps' | 'type-only' | 'unused';
8
- importCount: number;
9
- typeOnlyImportCount: number;
10
- }
11
-
12
- export interface DepClassificationResult {
13
- packages: PackageDepClassification[];
14
- typeOnlyCount: number; // packages only used in type positions
15
- mixedCount: number; // packages used in both
16
- valueOnlyCount: number;
17
- }
18
-
19
- interface EdgeRow {
20
- relation: string;
21
- confidence: string | null;
22
- src: string;
23
- tgt: string;
24
- tgt_name: string;
25
- properties: string | null;
26
- }
27
-
28
- function isExternalPackage(tgtName: string, tgtFilePath: string): boolean {
29
- // External if the file_path doesn't start with '/' or '.'
30
- // and doesn't look like a relative import
31
- if (!tgtFilePath) {
32
- // Fall back to name heuristic: starts with alpha, no path separators
33
- return /^[a-zA-Z@]/.test(tgtName) && !tgtName.includes('/') || /^@[a-zA-Z]/.test(tgtName);
34
- }
35
- return !tgtFilePath.startsWith('/') && !tgtFilePath.startsWith('.');
36
- }
37
-
38
- function extractPackageName(tgt: string): string {
39
- // Handle scoped packages like @scope/name
40
- if (tgt.startsWith('@')) {
41
- const parts = tgt.split('/');
42
- return parts.slice(0, 2).join('/');
43
- }
44
- // Plain packages: take only the package name portion (before any '/')
45
- return tgt.split('/')[0];
46
- }
47
-
48
- export function classifyDependencies(db: MonographDb): DepClassificationResult {
49
- const rows = db.prepare(`
50
- SELECT e.relation, e.confidence, n_src.file_path as src, n_tgt.file_path as tgt, n_tgt.name as tgt_name, e.properties
51
- FROM edges e
52
- JOIN nodes n_src ON n_src.id = e.source_id
53
- JOIN nodes n_tgt ON n_tgt.id = e.target_id
54
- WHERE e.relation = 'IMPORTS'
55
- `).all() as EdgeRow[];
56
-
57
- // Aggregate per external package
58
- const packageMap = new Map<string, { valueImports: number; typeImports: number }>();
59
-
60
- for (const row of rows) {
61
- const tgtPath = row.tgt ?? '';
62
- const tgtName = row.tgt_name ?? '';
63
-
64
- if (!isExternalPackage(tgtName, tgtPath)) continue;
65
-
66
- const packageName = extractPackageName(tgtName || tgtPath);
67
- if (!packageName) continue;
68
-
69
- // Check if type-only: parse properties JSON for isTypeOnly flag
70
- let isTypeOnly = false;
71
- if (row.properties) {
72
- try {
73
- const props = JSON.parse(row.properties) as Record<string, unknown>;
74
- isTypeOnly = props['isTypeOnly'] === true;
75
- } catch {
76
- // fall through — infer from confidence
77
- }
78
- }
79
- // Note: INFERRED confidence is NOT a reliable signal for type-only imports —
80
- // re-export propagation and wildcard synthesis both emit INFERRED edges for real
81
- // runtime imports. Only trust the explicit isTypeOnly property.
82
-
83
- const existing = packageMap.get(packageName) ?? { valueImports: 0, typeImports: 0 };
84
- if (isTypeOnly) {
85
- existing.typeImports++;
86
- } else {
87
- existing.valueImports++;
88
- }
89
- packageMap.set(packageName, existing);
90
- }
91
-
92
- const packages: PackageDepClassification[] = [];
93
-
94
- for (const [packageName, counts] of packageMap) {
95
- const usedAsValue = counts.valueImports > 0;
96
- const usedAsTypeOnly = counts.typeImports > 0;
97
-
98
- let recommendation: PackageDepClassification['recommendation'];
99
- if (usedAsValue && usedAsTypeOnly) {
100
- recommendation = 'keep-as-dep';
101
- } else if (usedAsValue && !usedAsTypeOnly) {
102
- recommendation = 'keep-as-dep';
103
- } else if (!usedAsValue && usedAsTypeOnly) {
104
- recommendation = 'type-only';
105
- } else {
106
- recommendation = 'unused';
107
- }
108
-
109
- packages.push({
110
- packageName,
111
- usedAsValue,
112
- usedAsTypeOnly,
113
- recommendation,
114
- importCount: counts.valueImports + counts.typeImports,
115
- typeOnlyImportCount: counts.typeImports,
116
- });
117
- }
118
-
119
- // Sort: 'type-only' first, then 'unused', then rest
120
- const ORDER: Record<string, number> = { 'type-only': 0, 'unused': 1, 'move-to-devdeps': 2, 'keep-as-dep': 3 };
121
- packages.sort((a, b) => (ORDER[a.recommendation] ?? 3) - (ORDER[b.recommendation] ?? 3));
122
-
123
- const typeOnlyCount = packages.filter(p => p.recommendation === 'type-only').length;
124
- const mixedCount = packages.filter(p => p.usedAsValue && p.usedAsTypeOnly).length;
125
- const valueOnlyCount = packages.filter(p => p.usedAsValue && !p.usedAsTypeOnly).length;
126
-
127
- return {
128
- packages,
129
- typeOnlyCount,
130
- mixedCount,
131
- valueOnlyCount,
132
- };
133
- }
134
-
135
- /** Format DepClassificationResult as structured text for LLM navigation and actionable guidance. */
136
- export function formatDepClassification(result: DepClassificationResult): string {
137
- if (result.packages.length === 0) {
138
- return 'Dependency classification: no external packages detected.';
139
- }
140
-
141
- const lines: string[] = [
142
- `Dependency classification: ${result.packages.length} external package(s).`,
143
- ` type-only: ${result.typeOnlyCount} mixed: ${result.mixedCount} value-only: ${result.valueOnlyCount}`,
144
- '',
145
- ];
146
-
147
- const groups: Array<[PackageDepClassification['recommendation'], string, string]> = [
148
- ['type-only', 'Type-only (move to devDependencies or use @types)', 'Move to devDependencies — not needed at runtime.'],
149
- ['unused', 'Unused', 'Remove from dependencies — no imports detected.'],
150
- ['move-to-devdeps', 'Move to devDependencies', 'Only used in non-production code paths.'],
151
- ['keep-as-dep', 'Keep as dependency', 'Used as runtime value imports — keep in dependencies.'],
152
- ];
153
-
154
- for (const [rec, heading, advice] of groups) {
155
- const pkgs = result.packages.filter(p => p.recommendation === rec);
156
- if (pkgs.length === 0) continue;
157
- lines.push(`${heading} (${pkgs.length}):`);
158
- for (const p of pkgs) {
159
- const typeNote = p.typeOnlyImportCount > 0 ? ` (${p.typeOnlyImportCount} type-only)` : '';
160
- lines.push(` ${p.packageName} imports:${p.importCount}${typeNote}`);
161
- }
162
- lines.push(` → ${advice}`);
163
- lines.push('');
164
- }
165
-
166
- return lines.join('\n').trimEnd();
167
- }
@@ -1,146 +0,0 @@
1
- /**
2
- * Dependency health scoring.
3
- *
4
- * Produces a composite [0, 1] score by combining four sub-metrics:
5
- *
6
- * 1. Cycle penalty — fraction of nodes involved in cycles (lower = worse)
7
- * 2. Dead-code ratio — fraction of nodes that are unreachable / unused
8
- * 3. Fan-out skew — coefficient of variation of out-degrees (high skew = god nodes)
9
- * 4. God-node concentration — max in-degree / total edges (hub dominance)
10
- *
11
- * Final score = 1 − weighted average of penalties.
12
- * All individual penalty components are clamped to [0, 1].
13
- */
14
-
15
- export interface DependencyHealthEdge {
16
- sourceId: string;
17
- targetId: string;
18
- }
19
-
20
- export interface DependencyHealthInput {
21
- /** All node IDs in the graph. */
22
- nodes: string[];
23
- /** All directed edges. */
24
- edges: DependencyHealthEdge[];
25
- /** Pre-computed number of cycles (e.g., from detectCycles). */
26
- cycleCount: number;
27
- /** Pre-computed count of dead nodes (e.g., from detectDeadCode). */
28
- deadNodeCount: number;
29
- }
30
-
31
- export interface DependencyHealthDetails {
32
- /** Fraction of nodes involved in cycles in [0, 1]. */
33
- cyclePenalty: number;
34
- /** Fraction of dead nodes in [0, 1]. */
35
- deadCodeRatio: number;
36
- /** Coefficient of variation for out-degree distribution (normalised to [0,1]). */
37
- fanSkew: number;
38
- /** Max in-degree / total edge count — hub dominance in [0, 1]. */
39
- godNodeConcentration: number;
40
- }
41
-
42
- export interface DependencyHealthResult {
43
- /** Composite health score in [0, 1] where 1 is perfectly healthy. */
44
- score: number;
45
- details: DependencyHealthDetails;
46
- }
47
-
48
- function stdDev(values: number[]): number {
49
- if (values.length === 0) return 0;
50
- const mean = values.reduce((a, b) => a + b, 0) / values.length;
51
- const variance = values.reduce((a, b) => a + (b - mean) ** 2, 0) / values.length;
52
- return Math.sqrt(variance);
53
- }
54
-
55
- function clamp(x: number): number {
56
- return Math.max(0, Math.min(1, x));
57
- }
58
-
59
- /**
60
- * Compute a composite dependency health score for the given graph.
61
- */
62
- export function dependencyHealth(input: DependencyHealthInput): DependencyHealthResult {
63
- const { nodes, edges, cycleCount, deadNodeCount } = input;
64
- const n = nodes.length;
65
- const m = edges.length;
66
-
67
- if (n === 0) {
68
- return {
69
- score: 1,
70
- details: { cyclePenalty: 0, deadCodeRatio: 0, fanSkew: 0, godNodeConcentration: 0 },
71
- };
72
- }
73
-
74
- // 1. Cycle penalty: cycleCount is the number of nodes in cycles (from topologicalLevelSort)
75
- // Normalised by node count. Capped at 1.
76
- const cyclePenalty = clamp(cycleCount / n);
77
-
78
- // 2. Dead-code ratio
79
- const deadCodeRatio = clamp(deadNodeCount / n);
80
-
81
- // 3. Fan-out skew: coefficient of variation of out-degrees, normalised
82
- const outDegree = new Map<string, number>(nodes.map(id => [id, 0]));
83
- for (const { sourceId } of edges) {
84
- outDegree.set(sourceId, (outDegree.get(sourceId) ?? 0) + 1);
85
- }
86
- const outValues = [...outDegree.values()];
87
- const outMean = outValues.reduce((a, b) => a + b, 0) / n;
88
- const cv = outMean > 0 ? stdDev(outValues) / outMean : 0;
89
- // CV > 2 → very skewed; normalise to [0,1] by clamping at 4
90
- const fanSkew = clamp(cv / 4);
91
-
92
- // 4. God-node concentration: max in-degree / total edges
93
- const inDegree = new Map<string, number>(nodes.map(id => [id, 0]));
94
- for (const { targetId } of edges) {
95
- inDegree.set(targetId, (inDegree.get(targetId) ?? 0) + 1);
96
- }
97
- // Use reduce instead of spread to avoid RangeError on graphs with 65k+ nodes
98
- const maxInDeg = inDegree.size > 0
99
- ? [...inDegree.values()].reduce((a, b) => Math.max(a, b), 0)
100
- : 0;
101
- const godNodeConcentration = m > 0 ? clamp(maxInDeg / m) : 0;
102
-
103
- // Weighted composite penalty (weights sum to 1)
104
- const W_CYCLE = 0.35;
105
- const W_DEAD = 0.25;
106
- const W_FAN = 0.20;
107
- const W_GOD = 0.20;
108
-
109
- const penalty =
110
- W_CYCLE * cyclePenalty +
111
- W_DEAD * deadCodeRatio +
112
- W_FAN * fanSkew +
113
- W_GOD * godNodeConcentration;
114
-
115
- const score = clamp(1 - penalty);
116
-
117
- return {
118
- score,
119
- details: { cyclePenalty, deadCodeRatio, fanSkew, godNodeConcentration },
120
- };
121
- }
122
-
123
- /**
124
- * Format dependency health results as structured text for LLM consumption.
125
- */
126
- export function formatDependencyHealth(result: DependencyHealthResult): string {
127
- const { score, details } = result;
128
- const pct = (v: number) => `${(v * 100).toFixed(1)}%`;
129
- const grade = score >= 0.9 ? 'Excellent' : score >= 0.75 ? 'Good' : score >= 0.5 ? 'Fair' : 'Poor';
130
- const lines: string[] = [
131
- `Dependency health score: ${pct(score)} (${grade})`,
132
- ` Cycle penalty : ${pct(details.cyclePenalty)} (fraction of nodes in cycles; weight 35%)`,
133
- ` Dead-code ratio : ${pct(details.deadCodeRatio)} (fraction of unreachable nodes; weight 25%)`,
134
- ` Fan-out skew : ${pct(details.fanSkew)} (out-degree coefficient of variation / 4; weight 20%)`,
135
- ` God-node density : ${pct(details.godNodeConcentration)} (max in-degree / total edges; weight 20%)`,
136
- ];
137
- const advice: string[] = [];
138
- if (details.cyclePenalty > 0.1) advice.push('reduce circular imports (cyclePenalty high)');
139
- if (details.deadCodeRatio > 0.1) advice.push('remove unreachable exports (deadCodeRatio high)');
140
- if (details.fanSkew > 0.25) advice.push('break up high-fan-out modules (fanSkew high)');
141
- if (details.godNodeConcentration > 0.1) advice.push('distribute hub dependencies (godNodeConcentration high)');
142
- if (advice.length > 0) {
143
- lines.push(' Recommendations: ' + advice.join('; '));
144
- }
145
- return lines.join('\n');
146
- }
@@ -1,110 +0,0 @@
1
- import type { MonographDb } from '../storage/db.js';
2
-
3
- export interface DuplicateExportLocation {
4
- nodeId: string;
5
- filePath: string | null;
6
- startLine: number | null;
7
- label: string;
8
- }
9
-
10
- export interface DuplicateExportGroup {
11
- exportName: string;
12
- locations: DuplicateExportLocation[];
13
- count: number;
14
- }
15
-
16
- export interface DuplicateExportsResult {
17
- groups: DuplicateExportGroup[];
18
- totalDuplicates: number;
19
- affectedFiles: number;
20
- }
21
-
22
- interface ExportedRow {
23
- id: string;
24
- name: string;
25
- file_path: string | null;
26
- start_line: number | null;
27
- label: string;
28
- }
29
-
30
- /** Generic names that are too common to be meaningful duplicates. */
31
- const GENERIC_NAMES = new Set(['default', 'index', 'module']);
32
-
33
- export function detectDuplicateExports(db: MonographDb): DuplicateExportsResult {
34
- const rows = db.prepare(
35
- `SELECT id, name, file_path, start_line, label
36
- FROM nodes
37
- WHERE is_exported = 1
38
- AND label IN ('Function','Class','Method','Interface','Const','TypeAlias','Enum','Variable')`
39
- ).all() as ExportedRow[];
40
-
41
- // Group by normalized name
42
- const groups = new Map<string, DuplicateExportLocation[]>();
43
-
44
- for (const row of rows) {
45
- const normalized = row.name.toLowerCase().trim();
46
- if (GENERIC_NAMES.has(normalized)) continue;
47
-
48
- let list = groups.get(normalized);
49
- if (!list) {
50
- list = [];
51
- groups.set(normalized, list);
52
- }
53
- list.push({ nodeId: row.id, filePath: row.file_path, startLine: row.start_line ?? null, label: row.label });
54
- }
55
-
56
- // Filter to duplicates only (count > 1)
57
- const duplicateGroups: DuplicateExportGroup[] = [];
58
- const affectedFileSet = new Set<string>();
59
-
60
- for (const [name, locations] of groups) {
61
- if (locations.length <= 1) continue;
62
-
63
- duplicateGroups.push({
64
- exportName: name,
65
- locations,
66
- count: locations.length,
67
- });
68
-
69
- for (const loc of locations) {
70
- if (loc.filePath) affectedFileSet.add(loc.filePath);
71
- }
72
- }
73
-
74
- // Sort by count descending
75
- duplicateGroups.sort((a, b) => b.count - a.count);
76
-
77
- return {
78
- groups: duplicateGroups,
79
- totalDuplicates: duplicateGroups.length,
80
- affectedFiles: affectedFileSet.size,
81
- };
82
- }
83
-
84
- /** Format DuplicateExportsResult as structured text with file:line hints for LLM navigation. */
85
- export function formatDuplicateExports(result: DuplicateExportsResult): string {
86
- if (result.totalDuplicates === 0) {
87
- return 'Duplicate exports: none detected.';
88
- }
89
-
90
- const lines: string[] = [
91
- `Duplicate exports: ${result.totalDuplicates} name(s) exported from multiple files (${result.affectedFiles} file(s) affected).`,
92
- '',
93
- ];
94
-
95
- for (const group of result.groups) {
96
- lines.push(` ${group.exportName} (${group.count} locations):`);
97
- for (const loc of group.locations) {
98
- const ref = loc.filePath
99
- ? loc.startLine != null
100
- ? `${loc.filePath}:${loc.startLine}`
101
- : loc.filePath
102
- : '(unknown)';
103
- lines.push(` ${loc.label} ${ref}`);
104
- }
105
- }
106
-
107
- lines.push('');
108
- lines.push('Fix: consolidate duplicate exports into a single canonical location or rename to avoid conflicts.');
109
- return lines.join('\n').trimEnd();
110
- }