@monoes/monograph 1.5.6 → 1.5.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (596) hide show
  1. package/README.md +25 -9
  2. package/dist/src/mcp-tools/impact.d.ts.map +1 -1
  3. package/dist/src/mcp-tools/impact.js +1 -10
  4. package/dist/src/mcp-tools/impact.js.map +1 -1
  5. package/dist/tsconfig.tsbuildinfo +1 -1
  6. package/package.json +12 -9
  7. package/.monomind/data/ranked-context.json +0 -5
  8. package/.monomind/loops/mastermind-review-1782162423447.json +0 -16
  9. package/.monomind/sessions/session-1777578175215.json +0 -15
  10. package/.monomind/sessions/session-1777823684507.json +0 -15
  11. package/.monomind/sessions/session-1777928944749.json +0 -15
  12. package/.monomind/sessions/session-1778052902210.json +0 -15
  13. package/.monomind/sessions/session-1778056744636.json +0 -15
  14. package/.monomind/sessions/session-1778061077599.json +0 -15
  15. package/.monomind/sessions/session-1778102154764.json +0 -15
  16. package/__tests__/analysis/shape-extractor.test.ts +0 -124
  17. package/__tests__/analysis/surprise-scorer.test.ts +0 -154
  18. package/__tests__/cache/extraction-cache.test.ts +0 -45
  19. package/__tests__/cli/ai-context.test.ts +0 -175
  20. package/__tests__/cli/augment.test.ts +0 -128
  21. package/__tests__/cli/doctor.test.ts +0 -125
  22. package/__tests__/cli/eval-server.test.ts +0 -89
  23. package/__tests__/cli/setup.test.ts +0 -178
  24. package/__tests__/cli/skill-gen.test.ts +0 -280
  25. package/__tests__/export/formats.test.ts +0 -82
  26. package/__tests__/fixtures/sample.c +0 -25
  27. package/__tests__/fixtures/sample.cpp +0 -32
  28. package/__tests__/fixtures/sample.dart +0 -34
  29. package/__tests__/fixtures/sample.kt +0 -30
  30. package/__tests__/fixtures/sample.php +0 -30
  31. package/__tests__/fixtures/sample.py +0 -11
  32. package/__tests__/fixtures/sample.rb +0 -26
  33. package/__tests__/fixtures/sample.swift +0 -42
  34. package/__tests__/fixtures/sample.ts +0 -17
  35. package/__tests__/fixtures/sample.vue +0 -40
  36. package/__tests__/groups/group-search.test.ts +0 -221
  37. package/__tests__/groups/group-sync.test.ts +0 -336
  38. package/__tests__/integration/build-atomicity.test.ts +0 -61
  39. package/__tests__/integration/call-attribution.test.ts +0 -116
  40. package/__tests__/integration/full-pipeline.test.ts +0 -64
  41. package/__tests__/integration/graph-report-freshness.test.ts +0 -53
  42. package/__tests__/integration/incremental-build.test.ts +0 -103
  43. package/__tests__/mcp-resources/resources.test.ts +0 -256
  44. package/__tests__/mcp-tools/api-impact.test.ts +0 -188
  45. package/__tests__/mcp-tools/context.test.ts +0 -130
  46. package/__tests__/mcp-tools/cypher.test.ts +0 -258
  47. package/__tests__/mcp-tools/detect-changes.test.ts +0 -114
  48. package/__tests__/mcp-tools/impact.test.ts +0 -133
  49. package/__tests__/mcp-tools/rename.test.ts +0 -117
  50. package/__tests__/mcp-tools/route-map.test.ts +0 -237
  51. package/__tests__/mcp-tools/shape-check.test.ts +0 -202
  52. package/__tests__/mcp-tools/tool-map.test.ts +0 -135
  53. package/__tests__/parsers/c.test.ts +0 -28
  54. package/__tests__/parsers/cpp.test.ts +0 -28
  55. package/__tests__/parsers/csharp.test.ts +0 -62
  56. package/__tests__/parsers/dart.test.ts +0 -28
  57. package/__tests__/parsers/kotlin.test.ts +0 -28
  58. package/__tests__/parsers/loader.test.ts +0 -14
  59. package/__tests__/parsers/php.test.ts +0 -28
  60. package/__tests__/parsers/python.test.ts +0 -32
  61. package/__tests__/parsers/ruby.test.ts +0 -33
  62. package/__tests__/parsers/swift.test.ts +0 -28
  63. package/__tests__/parsers/typescript.test.ts +0 -45
  64. package/__tests__/parsers/vue.test.ts +0 -28
  65. package/__tests__/pipeline/analysis.test.ts +0 -58
  66. package/__tests__/pipeline/phases/corpus-check.test.ts +0 -26
  67. package/__tests__/pipeline/phases/evidence.test.ts +0 -41
  68. package/__tests__/pipeline/phases/field-access.test.ts +0 -22
  69. package/__tests__/pipeline/phases/leiden.test.ts +0 -72
  70. package/__tests__/pipeline/phases/markdown.test.ts +0 -84
  71. package/__tests__/pipeline/phases/middleware-extractor.test.ts +0 -131
  72. package/__tests__/pipeline/phases/orm.test.ts +0 -379
  73. package/__tests__/pipeline/phases/processes.test.ts +0 -191
  74. package/__tests__/pipeline/phases/routes.test.ts +0 -195
  75. package/__tests__/pipeline/phases/scope-resolution.test.ts +0 -133
  76. package/__tests__/pipeline/phases/tools.test.ts +0 -161
  77. package/__tests__/pipeline/phases/variables.test.ts +0 -30
  78. package/__tests__/pipeline/phases/wildcard-synthesis.test.ts +0 -207
  79. package/__tests__/pipeline/phases.test.ts +0 -41
  80. package/__tests__/pipeline/runner.test.ts +0 -28
  81. package/__tests__/registry/repo-registry.test.ts +0 -127
  82. package/__tests__/reporting/graph-report.suggest.test.ts +0 -36
  83. package/__tests__/reporting/graph-report.test.ts +0 -165
  84. package/__tests__/search/ast-chunker.test.ts +0 -63
  85. package/__tests__/search/rrf.test.ts +0 -95
  86. package/__tests__/security/safe-fetch.test.ts +0 -41
  87. package/__tests__/security/sensitive-files.test.ts +0 -32
  88. package/__tests__/setup.ts +0 -1
  89. package/__tests__/skills/platform-skills.test.ts +0 -63
  90. package/__tests__/staleness/git-staleness.test.ts +0 -107
  91. package/__tests__/storage/db.test.ts +0 -37
  92. package/__tests__/storage/evidence-roundtrip.test.ts +0 -89
  93. package/__tests__/storage/stores.test.ts +0 -165
  94. package/__tests__/types.test.ts +0 -13
  95. package/__tests__/validation/extraction-validator.test.ts +0 -48
  96. package/__tests__/watch/watcher.test.ts +0 -31
  97. package/__tests__/web/analyze-api.test.ts +0 -66
  98. package/__tests__/web/api.test.ts +0 -210
  99. package/__tests__/web/mcp-http.test.ts +0 -67
  100. package/__tests__/web/react-ui.test.ts +0 -43
  101. package/__tests__/wiki/gist-publisher.test.ts +0 -66
  102. package/__tests__/wiki/providers.test.ts +0 -69
  103. package/__tests__/wiki/wiki-generator.test.ts +0 -260
  104. package/src/__tests__/analysis/benchmark.test.ts +0 -59
  105. package/src/__tests__/analysis/cluster-quality.test.ts +0 -106
  106. package/src/__tests__/analysis/corpus-health.test.ts +0 -33
  107. package/src/__tests__/analysis/dependency-health.test.ts +0 -105
  108. package/src/__tests__/analysis/file-classifier.test.ts +0 -50
  109. package/src/__tests__/analysis/node-similarity.test.ts +0 -81
  110. package/src/__tests__/cache/augment-cache.test.ts +0 -55
  111. package/src/__tests__/cli/check-update.test.ts +0 -42
  112. package/src/__tests__/cli/hooks-install.test.ts +0 -56
  113. package/src/__tests__/cli/hooks-marker.test.ts +0 -138
  114. package/src/__tests__/cli/hooks-status.test.ts +0 -42
  115. package/src/__tests__/export/adjacency-matrix.test.ts +0 -116
  116. package/src/__tests__/export/csv.test.ts +0 -39
  117. package/src/__tests__/export/dot.test.ts +0 -86
  118. package/src/__tests__/export/gexf.test.ts +0 -78
  119. package/src/__tests__/export/graphml.test.ts +0 -57
  120. package/src/__tests__/export/mermaid.test.ts +0 -89
  121. package/src/__tests__/graph/betweenness.test.ts +0 -89
  122. package/src/__tests__/graph/cycles.test.ts +0 -131
  123. package/src/__tests__/graph/dead-code.test.ts +0 -174
  124. package/src/__tests__/graph/dfs.test.ts +0 -62
  125. package/src/__tests__/graph/diff-summary.test.ts +0 -83
  126. package/src/__tests__/graph/edge-filter.test.ts +0 -129
  127. package/src/__tests__/graph/import-chain.test.ts +0 -111
  128. package/src/__tests__/graph/merge.test.ts +0 -151
  129. package/src/__tests__/graph/node-search.test.ts +0 -167
  130. package/src/__tests__/graph/normalize-id.test.ts +0 -102
  131. package/src/__tests__/graph/pagerank.test.ts +0 -96
  132. package/src/__tests__/graph/prune.test.ts +0 -110
  133. package/src/__tests__/graph/regex-search.test.ts +0 -166
  134. package/src/__tests__/graph/ripple-impact.test.ts +0 -73
  135. package/src/__tests__/graph/scc.test.ts +0 -85
  136. package/src/__tests__/graph/statistics.test.ts +0 -219
  137. package/src/__tests__/graph/subgraph.test.ts +0 -127
  138. package/src/__tests__/graph/topo-sort.test.ts +0 -110
  139. package/src/__tests__/graph/wcc.test.ts +0 -101
  140. package/src/__tests__/groups/grpc-extractor.test.ts +0 -47
  141. package/src/__tests__/groups/service-boundary.test.ts +0 -86
  142. package/src/__tests__/groups/topic-extractor.test.ts +0 -43
  143. package/src/__tests__/ingest/git-clone.test.ts +0 -128
  144. package/src/__tests__/ingest/query-memory.test.ts +0 -123
  145. package/src/__tests__/ingest/transcribe.test.ts +0 -58
  146. package/src/__tests__/ingest/url-ingest.test.ts +0 -48
  147. package/src/__tests__/mcp-resources/repo-context-resource.test.ts +0 -37
  148. package/src/__tests__/mcp-resources/repos-resource.test.ts +0 -71
  149. package/src/__tests__/mcp-resources/wiki-resource.test.ts +0 -52
  150. package/src/__tests__/mcp-tools/explain.test.ts +0 -46
  151. package/src/__tests__/mcp-tools/graph-query.test.ts +0 -45
  152. package/src/__tests__/mcp-tools/group-sync.test.ts +0 -8
  153. package/src/__tests__/mcp-tools/impact-filtering.test.ts +0 -48
  154. package/src/__tests__/mcp-tools/impact.risk.test.ts +0 -24
  155. package/src/__tests__/mcp-tools/list-repos.test.ts +0 -24
  156. package/src/__tests__/mcp-tools/neighbors.test.ts +0 -48
  157. package/src/__tests__/mcp-tools/query.test.ts +0 -42
  158. package/src/__tests__/parsers/language-parsers.test.ts +0 -52
  159. package/src/__tests__/parsers/named-bindings.test.ts +0 -73
  160. package/src/__tests__/pipeline/cluster-only.test.ts +0 -33
  161. package/src/__tests__/pipeline/phases/bridge-adapters/electron-ipc.test.ts +0 -87
  162. package/src/__tests__/pipeline/phases/bridge-adapters/tauri.test.ts +0 -116
  163. package/src/__tests__/pipeline/phases/bridge-adapters/wails.test.ts +0 -81
  164. package/src/__tests__/pipeline/phases/bridge-resolver.test.ts +0 -110
  165. package/src/__tests__/pipeline/phases/communities.cohesion.test.ts +0 -43
  166. package/src/__tests__/pipeline/phases/community-split.test.ts +0 -30
  167. package/src/__tests__/pipeline/phases/framework-detect.test.ts +0 -65
  168. package/src/__tests__/pipeline/phases/import-resolver.test.ts +0 -64
  169. package/src/__tests__/pipeline/phases/parse-arrow.test.ts +0 -33
  170. package/src/__tests__/pipeline/phases/parse-csharp.test.ts +0 -33
  171. package/src/__tests__/pipeline/phases/scan.monographignore.test.ts +0 -53
  172. package/src/__tests__/pipeline/phases/scan.negation.test.ts +0 -40
  173. package/src/__tests__/pipeline/phases/scope-resolution.go.test.ts +0 -34
  174. package/src/__tests__/pipeline/phases/scope-resolution.java.test.ts +0 -30
  175. package/src/__tests__/pipeline/phases/scope-resolution.rust.test.ts +0 -31
  176. package/src/__tests__/pipeline/phases/suggest-questions.test.ts +0 -46
  177. package/src/__tests__/pipeline/phases/surprises-scoring.test.ts +0 -46
  178. package/src/__tests__/pipeline/phases/variables-phase.test.ts +0 -78
  179. package/src/__tests__/pipeline/phases/wildcard-phase.test.ts +0 -99
  180. package/src/__tests__/pipeline/runner.parallel.test.ts +0 -78
  181. package/src/__tests__/reporting/graph-report-confidence.test.ts +0 -43
  182. package/src/__tests__/reporting/graph-report-gaps.test.ts +0 -41
  183. package/src/__tests__/scope-resolution/call-sites.test.ts +0 -89
  184. package/src/__tests__/scope-resolution/evidence-weights.test.ts +0 -49
  185. package/src/__tests__/search/diacritic.test.ts +0 -23
  186. package/src/__tests__/security/safe-fetch.test.ts +0 -125
  187. package/src/__tests__/skills/platform-skills.extra.test.ts +0 -36
  188. package/src/__tests__/web/api.clusters.test.ts +0 -65
  189. package/src/__tests__/web/api.file.test.ts +0 -44
  190. package/src/__tests__/web/api.grep.test.ts +0 -47
  191. package/src/__tests__/web/api.info.test.ts +0 -18
  192. package/src/__tests__/web/api.jobs.test.ts +0 -47
  193. package/src/__tests__/web/api.progress.test.ts +0 -25
  194. package/src/__tests__/web/api.stream.test.ts +0 -35
  195. package/src/__tests__/wiki/providers-reasoning.test.ts +0 -46
  196. package/src/__tests__/wiki/wiki-review-mode.test.ts +0 -22
  197. package/src/analysis/benchmark.ts +0 -132
  198. package/src/analysis/changed-files.ts +0 -73
  199. package/src/analysis/changed-workspaces.ts +0 -94
  200. package/src/analysis/churn-cache.ts +0 -179
  201. package/src/analysis/churn-trend.ts +0 -57
  202. package/src/analysis/churn.ts +0 -263
  203. package/src/analysis/cluster-quality.ts +0 -142
  204. package/src/analysis/combined.ts +0 -41
  205. package/src/analysis/corpus-health.ts +0 -41
  206. package/src/analysis/coverage-gaps.ts +0 -246
  207. package/src/analysis/dep-classification.ts +0 -167
  208. package/src/analysis/dependency-health.ts +0 -146
  209. package/src/analysis/duplicate-exports.ts +0 -110
  210. package/src/analysis/fallow-suppression.ts +0 -98
  211. package/src/analysis/feature-flags-config.ts +0 -47
  212. package/src/analysis/feature-flags.ts +0 -223
  213. package/src/analysis/file-classifier.ts +0 -87
  214. package/src/analysis/git-changed-files.ts +0 -62
  215. package/src/analysis/health-baseline.ts +0 -80
  216. package/src/analysis/issue-filters.ts +0 -56
  217. package/src/analysis/list.ts +0 -74
  218. package/src/analysis/node-similarity.ts +0 -115
  219. package/src/analysis/private-type-leaks.ts +0 -119
  220. package/src/analysis/progress.ts +0 -43
  221. package/src/analysis/project-state.ts +0 -95
  222. package/src/analysis/regression-config.ts +0 -36
  223. package/src/analysis/rule-overrides.ts +0 -81
  224. package/src/analysis/scripts.ts +0 -95
  225. package/src/analysis/shape-extractor.ts +0 -202
  226. package/src/analysis/since-duration.ts +0 -42
  227. package/src/analysis/suppression-context.ts +0 -95
  228. package/src/analysis/suppressions.ts +0 -80
  229. package/src/analysis/surprise-scorer.ts +0 -74
  230. package/src/analysis/targets.ts +0 -237
  231. package/src/analysis/unused-class-members.ts +0 -79
  232. package/src/analysis/workspace-filter.ts +0 -89
  233. package/src/analyze/boundary-analysis.ts +0 -129
  234. package/src/analyze/predicates/file.ts +0 -86
  235. package/src/analyze/predicates/import.ts +0 -90
  236. package/src/analyze/predicates/lifecycle.ts +0 -55
  237. package/src/analyze/unused-deps.ts +0 -70
  238. package/src/analyze/unused-exports.ts +0 -145
  239. package/src/analyze/unused-files.ts +0 -46
  240. package/src/api/production-override.ts +0 -63
  241. package/src/api/programmatic.ts +0 -118
  242. package/src/audit.ts +0 -234
  243. package/src/cache/augment-cache.ts +0 -63
  244. package/src/cache/extraction-cache.ts +0 -141
  245. package/src/check/filtering.ts +0 -78
  246. package/src/check/index.ts +0 -99
  247. package/src/check/output.ts +0 -79
  248. package/src/check/rules.ts +0 -61
  249. package/src/ci-template.ts +0 -84
  250. package/src/claude-cli.ts +0 -59
  251. package/src/cli/ai-context.ts +0 -193
  252. package/src/cli/augment.ts +0 -114
  253. package/src/cli/check-update.ts +0 -40
  254. package/src/cli/doctor.ts +0 -182
  255. package/src/cli/eval-server.ts +0 -126
  256. package/src/cli/hooks-install.ts +0 -202
  257. package/src/cli/setup.ts +0 -197
  258. package/src/cli/skill-gen.ts +0 -347
  259. package/src/commands/flags.ts +0 -72
  260. package/src/config/boundary-config.ts +0 -183
  261. package/src/config/cli-schema.ts +0 -81
  262. package/src/config/config-parsing.ts +0 -102
  263. package/src/config/duplicates-config.ts +0 -62
  264. package/src/config/external-plugin.ts +0 -77
  265. package/src/config/health-config.ts +0 -42
  266. package/src/config/ignore-exports-used-in-file.ts +0 -46
  267. package/src/config/migration-types.ts +0 -73
  268. package/src/config/output-format.ts +0 -24
  269. package/src/config/plugins/builtin.ts +0 -411
  270. package/src/config/plugins/registry.ts +0 -77
  271. package/src/config/plugins/types.ts +0 -14
  272. package/src/config/resolution.ts +0 -102
  273. package/src/config/rules.ts +0 -70
  274. package/src/config/schema-gen.ts +0 -115
  275. package/src/config/types.ts +0 -149
  276. package/src/config/used-class-members.ts +0 -53
  277. package/src/config/validate.ts +0 -108
  278. package/src/config/workspace.ts +0 -137
  279. package/src/coverage/cloud-client.ts +0 -111
  280. package/src/coverage/upload-inventory.ts +0 -84
  281. package/src/coverage/upload-source-maps.ts +0 -97
  282. package/src/discover/entry-points.ts +0 -51
  283. package/src/discover/infrastructure-entries.ts +0 -175
  284. package/src/duplicates/detect/concatenation.ts +0 -37
  285. package/src/duplicates/detect/extraction.ts +0 -107
  286. package/src/duplicates/detect/filtering.ts +0 -112
  287. package/src/duplicates/detect/lcp.ts +0 -27
  288. package/src/duplicates/detect/ranking.ts +0 -16
  289. package/src/duplicates/detect/statistics.ts +0 -69
  290. package/src/duplicates/detect/suffix-array.ts +0 -88
  291. package/src/duplicates/families.ts +0 -95
  292. package/src/duplicates/normalize.ts +0 -58
  293. package/src/duplicates/shingle-filter.ts +0 -37
  294. package/src/duplicates/token-types.ts +0 -62
  295. package/src/duplicates/tokenize/index.ts +0 -104
  296. package/src/error/fallow-error.ts +0 -94
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  298. package/src/export/adjacency-matrix.ts +0 -127
  299. package/src/export/analysis-json.ts +0 -87
  300. package/src/export/badge.ts +0 -105
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  302. package/src/export/codeclimate.ts +0 -201
  303. package/src/export/compact-health.ts +0 -119
  304. package/src/export/compact.ts +0 -83
  305. package/src/export/csv.ts +0 -33
  306. package/src/export/cypher.ts +0 -33
  307. package/src/export/dot.ts +0 -52
  308. package/src/export/gexf.ts +0 -59
  309. package/src/export/graphml.ts +0 -50
  310. package/src/export/html.ts +0 -548
  311. package/src/export/index.ts +0 -9
  312. package/src/export/json.ts +0 -36
  313. package/src/export/markdown.ts +0 -290
  314. package/src/export/mermaid.ts +0 -100
  315. package/src/export/obsidian.ts +0 -44
  316. package/src/export/sarif.ts +0 -245
  317. package/src/export/svg.ts +0 -68
  318. package/src/fix/deps.ts +0 -70
  319. package/src/fix/enum-members.ts +0 -103
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  323. package/src/graph/analyzer.ts +0 -69
  324. package/src/graph/author-analytics.ts +0 -217
  325. package/src/graph/baseline.ts +0 -432
  326. package/src/graph/clone-families.ts +0 -132
  327. package/src/graph/codeowners-extended.ts +0 -114
  328. package/src/graph/codeowners-gitlab.ts +0 -150
  329. package/src/graph/codeowners.ts +0 -217
  330. package/src/graph/complexity.ts +0 -200
  331. package/src/graph/cross-reference-findings.ts +0 -85
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  333. package/src/graph/cycle-detection.ts +0 -311
  334. package/src/graph/cycles.ts +0 -222
  335. package/src/graph/dead-code.ts +0 -128
  336. package/src/graph/dependency-closure.ts +0 -126
  337. package/src/graph/dfs.ts +0 -118
  338. package/src/graph/diff.ts +0 -92
  339. package/src/graph/duplication-stats.ts +0 -79
  340. package/src/graph/edge-filter.ts +0 -117
  341. package/src/graph/explain.ts +0 -133
  342. package/src/graph/external-style-usage.ts +0 -81
  343. package/src/graph/health-score.ts +0 -179
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  596. package/vitest.config.ts +0 -20
@@ -1,174 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { detectDeadCode, detectDeadCodeNodes, formatDeadCode } from '../../graph/dead-code.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-deadcode-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertFileNode(db: Database.Database, filePath: string) {
15
- const id = filePath.replace(/[/.]/g, '_') + '_file';
16
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, file_path, is_exported) VALUES (?, 'File', ?, ?, ?, 0)`)
17
- .run(id, filePath.split('/').pop(), filePath.split('/').pop(), filePath);
18
- return id;
19
- }
20
-
21
- function insertFunction(db: Database.Database, name: string, filePath: string, opts?: { exported?: boolean; startLine?: number }) {
22
- const id = filePath.replace(/[/.]/g, '_') + '_' + name + '_function';
23
- const fileId = filePath.replace(/[/.]/g, '_') + '_file';
24
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, file_path, start_line, is_exported) VALUES (?, 'Function', ?, ?, ?, ?, ?)`)
25
- .run(id, name, name.toLowerCase(), filePath, opts?.startLine ?? 1, opts?.exported ? 1 : 0);
26
- // CONTAINS edge from File → Function
27
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CONTAINS', 'EXTRACTED', 1.0)`)
28
- .run(`${fileId}_${id}_contains`, fileId, id);
29
- return id;
30
- }
31
-
32
- function insertCallEdge(db: Database.Database, src: string, tgt: string) {
33
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
34
- .run(`${src}_${tgt}_calls`, src, tgt);
35
- }
36
-
37
- function insertReExportEdge(db: Database.Database, srcFileId: string, tgtFileId: string) {
38
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'RE_EXPORTS', 'INFERRED', 0.8)`)
39
- .run(`${srcFileId}_${tgtFileId}_reexports`, srcFileId, tgtFileId);
40
- }
41
-
42
- describe('detectDeadCode', () => {
43
- it('returns empty array for empty graph', () => {
44
- const db = makeTempDb();
45
- expect(detectDeadCode(db)).toEqual([]);
46
- db.close();
47
- });
48
-
49
- it('does NOT flag non-exported functions', () => {
50
- const db = makeTempDb();
51
- insertFileNode(db, 'src/utils.ts');
52
- insertFunction(db, 'helper', 'src/utils.ts', { exported: false });
53
- expect(detectDeadCode(db)).toEqual([]);
54
- db.close();
55
- });
56
-
57
- it('flags exported function with no inbound edges', () => {
58
- const db = makeTempDb();
59
- insertFileNode(db, 'src/utils.ts');
60
- const id = insertFunction(db, 'unused', 'src/utils.ts', { exported: true });
61
- expect(detectDeadCode(db)).toContain(id);
62
- db.close();
63
- });
64
-
65
- it('does NOT flag functions with CALLS edges', () => {
66
- const db = makeTempDb();
67
- insertFileNode(db, 'src/a.ts');
68
- insertFileNode(db, 'src/b.ts');
69
- const callerId = insertFunction(db, 'caller', 'src/a.ts', { exported: true });
70
- const calleeId = insertFunction(db, 'callee', 'src/b.ts', { exported: true });
71
- insertCallEdge(db, callerId, calleeId);
72
- const result = detectDeadCode(db);
73
- expect(result).not.toContain(calleeId);
74
- db.close();
75
- });
76
-
77
- it('skips test files', () => {
78
- const db = makeTempDb();
79
- insertFileNode(db, 'src/__tests__/foo.test.ts');
80
- insertFunction(db, 'testHelper', 'src/__tests__/foo.test.ts', { exported: true });
81
- expect(detectDeadCode(db)).toEqual([]);
82
- db.close();
83
- });
84
-
85
- it('skips dist files', () => {
86
- const db = makeTempDb();
87
- insertFileNode(db, 'packages/foo/dist/utils.ts');
88
- insertFunction(db, 'built', 'packages/foo/dist/utils.ts', { exported: true });
89
- expect(detectDeadCode(db)).toEqual([]);
90
- db.close();
91
- });
92
-
93
- it('skips index files', () => {
94
- const db = makeTempDb();
95
- insertFileNode(db, 'src/index.ts');
96
- insertFunction(db, 'main', 'src/index.ts', { exported: true });
97
- expect(detectDeadCode(db)).toEqual([]);
98
- db.close();
99
- });
100
-
101
- it('does NOT suppress on a same-name coincidence alone (no real edge)', () => {
102
- // Regression test for P2-18(a): the old suppression matched on NAME EQUALITY
103
- // anywhere in the codebase, so a genuinely-dead `shared()` in a.ts was hidden
104
- // just because an unrelated `shared` also existed in b.ts. With no actual
105
- // RE_EXPORTS/IMPORTS edge between them, the candidate must still be flagged.
106
- const db = makeTempDb();
107
- insertFileNode(db, 'src/a.ts');
108
- insertFileNode(db, 'src/b.ts');
109
- const id = insertFunction(db, 'shared', 'src/a.ts', { exported: true });
110
- insertFunction(db, 'shared', 'src/b.ts', { exported: false });
111
- expect(detectDeadCode(db)).toContain(id);
112
- db.close();
113
- });
114
-
115
- it('does NOT suppress on same-name-in-index.ts alone (no real RE_EXPORTS edge)', () => {
116
- // Regression test for P2-18(a): a function sharing a name with something
117
- // index.ts happens to also define is not the same as being re-exported by it.
118
- const db = makeTempDb();
119
- insertFileNode(db, 'src/utils.ts');
120
- insertFileNode(db, 'src/index.ts');
121
- const id = insertFunction(db, 'helper', 'src/utils.ts', { exported: true });
122
- insertFunction(db, 'helper', 'src/index.ts', { exported: true });
123
- expect(detectDeadCode(db)).toContain(id);
124
- db.close();
125
- });
126
-
127
- it('skips functions re-exported through a REAL RE_EXPORTS edge from a barrel', () => {
128
- const db = makeTempDb();
129
- const utilsFileId = insertFileNode(db, 'src/utils.ts');
130
- const indexFileId = insertFileNode(db, 'src/index.ts');
131
- insertFunction(db, 'helper', 'src/utils.ts', { exported: true });
132
- // Actual barrel edge: src/index.ts RE_EXPORTS src/utils.ts's File node.
133
- insertReExportEdge(db, indexFileId, utilsFileId);
134
- expect(detectDeadCode(db)).toEqual([]);
135
- db.close();
136
- });
137
- });
138
-
139
- describe('detectDeadCodeNodes', () => {
140
- it('returns structured nodes with file path and line', () => {
141
- const db = makeTempDb();
142
- insertFileNode(db, 'src/utils.ts');
143
- insertFunction(db, 'unused', 'src/utils.ts', { exported: true, startLine: 42 });
144
- const nodes = detectDeadCodeNodes(db);
145
- expect(nodes).toHaveLength(1);
146
- expect(nodes[0]).toMatchObject({
147
- name: 'unused',
148
- filePath: 'src/utils.ts',
149
- startLine: 42,
150
- label: 'Function',
151
- });
152
- db.close();
153
- });
154
- });
155
-
156
- describe('formatDeadCode', () => {
157
- it('returns "none detected" for empty list', () => {
158
- expect(formatDeadCode([])).toBe('Dead code: none detected.');
159
- });
160
-
161
- it('includes candidate count and file locations', () => {
162
- const result = formatDeadCode([{
163
- id: 'test_id',
164
- name: 'unused',
165
- filePath: 'src/utils.ts',
166
- startLine: 42,
167
- label: 'Function',
168
- }]);
169
- expect(result).toContain('1 exported function');
170
- expect(result).toContain('src/utils.ts:42');
171
- expect(result).toContain('Candidates only');
172
- expect(result).not.toContain('lacks cross-file');
173
- });
174
- });
@@ -1,62 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { dfsTraversal } from '../../graph/dfs.js';
3
-
4
- function makeGraph(): Map<string, string[]> {
5
- const adj = new Map<string, string[]>();
6
- adj.set('a', ['b', 'c']);
7
- adj.set('b', ['d']);
8
- adj.set('c', ['d', 'e']);
9
- adj.set('d', []);
10
- adj.set('e', []);
11
- return adj;
12
- }
13
-
14
- describe('dfsTraversal', () => {
15
- it('visits all reachable nodes', () => {
16
- const visited: string[] = [];
17
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); });
18
- expect(visited.sort()).toEqual(['a', 'b', 'c', 'd', 'e'].sort());
19
- });
20
-
21
- it('respects depth limit', () => {
22
- const visited: string[] = [];
23
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); }, { maxDepth: 1 });
24
- expect(visited).toContain('a');
25
- expect(visited).toContain('b');
26
- expect(visited).toContain('c');
27
- expect(visited).not.toContain('d');
28
- expect(visited).not.toContain('e');
29
- });
30
-
31
- it('provides depth info in visitor', () => {
32
- const depths: Record<string, number> = {};
33
- dfsTraversal('a', makeGraph(), (node) => { depths[node.id] = node.depth; });
34
- expect(depths['a']).toBe(0);
35
- expect(depths['b']).toBe(1);
36
- expect(depths['d']).toBe(2);
37
- });
38
-
39
- it('does not revisit nodes (cycle safety)', () => {
40
- const cyclic = new Map<string, string[]>();
41
- cyclic.set('a', ['b']);
42
- cyclic.set('b', ['c']);
43
- cyclic.set('c', ['a']); // cycle
44
- const visited: string[] = [];
45
- dfsTraversal('a', cyclic, (node) => { visited.push(node.id); });
46
- expect(visited.length).toBe(3);
47
- expect(new Set(visited).size).toBe(3);
48
- });
49
-
50
- it('returns empty when start node not in graph', () => {
51
- const visited: string[] = [];
52
- dfsTraversal('z', makeGraph(), (node) => { visited.push(node.id); });
53
- expect(visited).toEqual([]);
54
- });
55
-
56
- it('returns nodes in DFS pre-order', () => {
57
- const visited: string[] = [];
58
- dfsTraversal('a', makeGraph(), (node) => { visited.push(node.id); });
59
- expect(visited.indexOf('a')).toBeLessThan(visited.indexOf('b'));
60
- expect(visited.indexOf('b')).toBeLessThan(visited.indexOf('d'));
61
- });
62
- });
@@ -1,83 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { diffSnapshots, type GraphSnapshot } from '../../graph/diff.js';
3
- import type { MonographNode, MonographEdge } from '../../types.js';
4
-
5
- function node(id: string): MonographNode {
6
- return {
7
- id,
8
- label: 'function',
9
- name: id,
10
- normLabel: id,
11
- filePath: `${id}.ts`,
12
- startLine: 1,
13
- endLine: 10,
14
- communityId: 0,
15
- isExported: false,
16
- language: 'typescript',
17
- properties: {},
18
- } as MonographNode;
19
- }
20
-
21
- function edge(sourceId: string, targetId: string): MonographEdge {
22
- return { id: `${sourceId}->${targetId}`, sourceId, targetId, relation: 'imports' } as MonographEdge;
23
- }
24
-
25
- describe('GraphDiff.summary', () => {
26
- it('includes summary string in diff result', () => {
27
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
28
- const after: GraphSnapshot = { nodes: [node('a'), node('b'), node('c')], edges: [edge('a', 'c')], capturedAt: '' };
29
- const diff = diffSnapshots(before, after);
30
- expect(typeof diff.summary).toBe('string');
31
- });
32
-
33
- it('reports new nodes in summary', () => {
34
- const before: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
35
- const after: GraphSnapshot = { nodes: [node('a'), node('b'), node('c')], edges: [], capturedAt: '' };
36
- const diff = diffSnapshots(before, after);
37
- expect(diff.summary).toMatch(/2 new node/);
38
- });
39
-
40
- it('reports removed nodes in summary', () => {
41
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
42
- const after: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
43
- const diff = diffSnapshots(before, after);
44
- expect(diff.summary).toMatch(/1 node removed/);
45
- });
46
-
47
- it('reports new edges in summary', () => {
48
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
49
- const after: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [edge('a', 'b')], capturedAt: '' };
50
- const diff = diffSnapshots(before, after);
51
- expect(diff.summary).toMatch(/1 new edge/);
52
- });
53
-
54
- it('reports removed edges in summary', () => {
55
- const before: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [edge('a', 'b')], capturedAt: '' };
56
- const after: GraphSnapshot = { nodes: [node('a'), node('b')], edges: [], capturedAt: '' };
57
- const diff = diffSnapshots(before, after);
58
- expect(diff.summary).toMatch(/1 edge removed/);
59
- });
60
-
61
- it('returns "no changes" when graph is unchanged', () => {
62
- const snap: GraphSnapshot = { nodes: [node('a')], edges: [], capturedAt: '' };
63
- const diff = diffSnapshots(snap, snap);
64
- expect(diff.summary).toMatch(/no changes/i);
65
- });
66
-
67
- it('combines multiple changes in one summary', () => {
68
- const before: GraphSnapshot = {
69
- nodes: [node('a'), node('b')],
70
- edges: [edge('a', 'b')],
71
- capturedAt: '',
72
- };
73
- const after: GraphSnapshot = {
74
- nodes: [node('a'), node('c')],
75
- edges: [edge('a', 'c')],
76
- capturedAt: '',
77
- };
78
- const diff = diffSnapshots(before, after);
79
- // Should mention new node, removed node, new edge, removed edge
80
- expect(diff.summary.length).toBeGreaterThan(5);
81
- expect(typeof diff.summary).toBe('string');
82
- });
83
- });
@@ -1,129 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { filterEdges, filterEdgesInMemory } from '../../graph/edge-filter.js';
3
- import { openDb } from '../../storage/db.js';
4
- import { join } from 'path';
5
- import { mkdtempSync } from 'fs';
6
- import { tmpdir } from 'os';
7
- import type { MonographEdge } from '../../types.js';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-edge-filter-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: ReturnType<typeof openDb>, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(
20
- db: ReturnType<typeof openDb>,
21
- id: string,
22
- src: string,
23
- tgt: string,
24
- relation = 'CALLS',
25
- confidence = 'EXTRACTED',
26
- score = 1.0,
27
- ) {
28
- db.prepare(
29
- `INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score)
30
- VALUES (?, ?, ?, ?, ?, ?)`,
31
- ).run(id, src, tgt, relation, confidence, score);
32
- }
33
-
34
- describe('filterEdges (DB-backed)', () => {
35
- it('returns all edges when no filter options are given', () => {
36
- const db = makeTempDb();
37
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
38
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
39
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'INFERRED', 0.5);
40
- const result = filterEdges(db);
41
- expect(result).toHaveLength(2);
42
- db.close();
43
- });
44
-
45
- it('filters by relation type', () => {
46
- const db = makeTempDb();
47
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
48
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
49
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'EXTRACTED', 1.0);
50
- const result = filterEdges(db, { relations: ['CALLS'] });
51
- expect(result).toHaveLength(1);
52
- expect(result[0].relation).toBe('CALLS');
53
- db.close();
54
- });
55
-
56
- it('filters by confidence label', () => {
57
- const db = makeTempDb();
58
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
59
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
60
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'INFERRED', 0.5);
61
- const result = filterEdges(db, { confidences: ['INFERRED'] });
62
- expect(result).toHaveLength(1);
63
- expect(result[0].confidence).toBe('INFERRED');
64
- db.close();
65
- });
66
-
67
- it('filters by minConfidenceScore', () => {
68
- const db = makeTempDb();
69
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
70
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 0.9);
71
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'INFERRED', 0.3);
72
- const result = filterEdges(db, { minConfidenceScore: 0.8 });
73
- expect(result).toHaveLength(1);
74
- expect(result[0].id).toBe('e1');
75
- db.close();
76
- });
77
-
78
- it('filters by maxConfidenceScore', () => {
79
- const db = makeTempDb();
80
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
81
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 0.9);
82
- insertEdge(db, 'e2', 'b', 'c', 'CALLS', 'AMBIGUOUS', 0.2);
83
- const result = filterEdges(db, { maxConfidenceScore: 0.5 });
84
- expect(result).toHaveLength(1);
85
- expect(result[0].id).toBe('e2');
86
- db.close();
87
- });
88
-
89
- it('combines relation and confidence filters (AND)', () => {
90
- const db = makeTempDb();
91
- insertNode(db, 'a'); insertNode(db, 'b'); insertNode(db, 'c');
92
- insertEdge(db, 'e1', 'a', 'b', 'CALLS', 'EXTRACTED', 1.0);
93
- insertEdge(db, 'e2', 'b', 'c', 'IMPORTS', 'INFERRED', 0.5);
94
- insertEdge(db, 'e3', 'a', 'c', 'CALLS', 'INFERRED', 0.5);
95
- const result = filterEdges(db, { relations: ['CALLS'], confidences: ['INFERRED'] });
96
- expect(result).toHaveLength(1);
97
- expect(result[0].id).toBe('e3');
98
- db.close();
99
- });
100
- });
101
-
102
- describe('filterEdgesInMemory', () => {
103
- const edges: MonographEdge[] = [
104
- { id: 'e1', sourceId: 'a', targetId: 'b', relation: 'CALLS', confidence: 'EXTRACTED', confidenceScore: 1.0 },
105
- { id: 'e2', sourceId: 'b', targetId: 'c', relation: 'IMPORTS', confidence: 'INFERRED', confidenceScore: 0.5 },
106
- { id: 'e3', sourceId: 'c', targetId: 'a', relation: 'CALLS', confidence: 'AMBIGUOUS', confidenceScore: 0.2 },
107
- ];
108
-
109
- it('returns all edges with no options', () => {
110
- expect(filterEdgesInMemory(edges)).toHaveLength(3);
111
- });
112
-
113
- it('filters by relation', () => {
114
- const result = filterEdgesInMemory(edges, { relations: ['CALLS'] });
115
- expect(result).toHaveLength(2);
116
- });
117
-
118
- it('filters by confidence', () => {
119
- const result = filterEdgesInMemory(edges, { confidences: ['EXTRACTED'] });
120
- expect(result).toHaveLength(1);
121
- expect(result[0].id).toBe('e1');
122
- });
123
-
124
- it('filters by minConfidenceScore and maxConfidenceScore', () => {
125
- const result = filterEdgesInMemory(edges, { minConfidenceScore: 0.3, maxConfidenceScore: 0.8 });
126
- expect(result).toHaveLength(1);
127
- expect(result[0].id).toBe('e2');
128
- });
129
- });
@@ -1,111 +0,0 @@
1
- import { describe, it, expect } from 'vitest';
2
- import { traceImportChain } from '../../graph/import-chain.js';
3
- import { openDb } from '../../storage/db.js';
4
- import Database from 'better-sqlite3';
5
- import { join } from 'path';
6
- import { mkdtempSync } from 'fs';
7
- import { tmpdir } from 'os';
8
-
9
- function makeTempDb() {
10
- const dir = mkdtempSync(join(tmpdir(), 'monograph-import-chain-test-'));
11
- return openDb(join(dir, 'test.db'));
12
- }
13
-
14
- function insertNode(db: Database.Database, id: string) {
15
- db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'File', ?, ?, 0)`)
16
- .run(id, id, id.toLowerCase());
17
- }
18
-
19
- function insertEdge(db: Database.Database, src: string, tgt: string) {
20
- db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'IMPORTS', 'EXTRACTED', 1.0)`)
21
- .run(`${src}_${tgt}`, src, tgt);
22
- }
23
-
24
- describe('traceImportChain', () => {
25
- it('returns empty array when source does not exist', () => {
26
- const db = makeTempDb();
27
- const result = traceImportChain(db, 'nonexistent', 'also-nonexistent');
28
- expect(result).toEqual([]);
29
- db.close();
30
- });
31
-
32
- it('returns empty array when no path exists', () => {
33
- const db = makeTempDb();
34
- insertNode(db, 'a');
35
- insertNode(db, 'b');
36
- // no edge between them
37
- const result = traceImportChain(db, 'a', 'b');
38
- expect(result).toEqual([]);
39
- db.close();
40
- });
41
-
42
- it('returns direct path when directly connected', () => {
43
- const db = makeTempDb();
44
- insertNode(db, 'a');
45
- insertNode(db, 'b');
46
- insertEdge(db, 'a', 'b');
47
- const result = traceImportChain(db, 'a', 'b');
48
- expect(result.length).toBeGreaterThan(0);
49
- expect(result[0]).toEqual(['a', 'b']);
50
- db.close();
51
- });
52
-
53
- it('returns path through intermediate node a->b->c', () => {
54
- const db = makeTempDb();
55
- insertNode(db, 'a');
56
- insertNode(db, 'b');
57
- insertNode(db, 'c');
58
- insertEdge(db, 'a', 'b');
59
- insertEdge(db, 'b', 'c');
60
- const result = traceImportChain(db, 'a', 'c');
61
- expect(result.length).toBeGreaterThan(0);
62
- const hasPath = result.some(p => JSON.stringify(p) === JSON.stringify(['a', 'b', 'c']));
63
- expect(hasPath).toBe(true);
64
- db.close();
65
- });
66
-
67
- it('returns multiple paths when they exist', () => {
68
- const db = makeTempDb();
69
- // a->b->d and a->c->d
70
- insertNode(db, 'a');
71
- insertNode(db, 'b');
72
- insertNode(db, 'c');
73
- insertNode(db, 'd');
74
- insertEdge(db, 'a', 'b');
75
- insertEdge(db, 'a', 'c');
76
- insertEdge(db, 'b', 'd');
77
- insertEdge(db, 'c', 'd');
78
- const result = traceImportChain(db, 'a', 'd');
79
- expect(result.length).toBe(2);
80
- db.close();
81
- });
82
-
83
- it('respects maxDepth option', () => {
84
- const db = makeTempDb();
85
- // a->b->c->d (depth 3 to reach d from a)
86
- ['a', 'b', 'c', 'd'].forEach(n => insertNode(db, n));
87
- insertEdge(db, 'a', 'b');
88
- insertEdge(db, 'b', 'c');
89
- insertEdge(db, 'c', 'd');
90
- // max depth 2 should not find a->b->c->d
91
- const result = traceImportChain(db, 'a', 'd', { maxDepth: 2 });
92
- expect(result).toEqual([]);
93
- db.close();
94
- });
95
-
96
- it('returns paths as arrays of node id strings', () => {
97
- const db = makeTempDb();
98
- insertNode(db, 'x');
99
- insertNode(db, 'y');
100
- insertEdge(db, 'x', 'y');
101
- const result = traceImportChain(db, 'x', 'y');
102
- expect(Array.isArray(result)).toBe(true);
103
- for (const path of result) {
104
- expect(Array.isArray(path)).toBe(true);
105
- for (const node of path) {
106
- expect(typeof node).toBe('string');
107
- }
108
- }
109
- db.close();
110
- });
111
- });