@monoes/monograph 1.5.6 → 1.5.7

package/src/__tests__/graph/merge.test.ts

@@ -1,151 +0,0 @@
-import { describe, it, expect } from 'vitest';
-import { mergeGraphs, mergeGraphIntoDb } from '../../graph/merge.js';
-import { openDb } from '../../storage/db.js';
-import { join } from 'path';
-import { mkdtempSync } from 'fs';
-import { tmpdir } from 'os';
-import type { MonographNode, MonographEdge } from '../../types.js';
-
-function makeTempDb() {
-  const dir = mkdtempSync(join(tmpdir(), 'monograph-merge-test-'));
-  return openDb(join(dir, 'test.db'));
-}
-
-function makeNode(id: string, overrides: Partial<MonographNode> = {}): MonographNode {
-  return {
-    id,
-    label: 'Function',
-    name: id,
-    normLabel: id.toLowerCase(),
-    isExported: false,
-    ...overrides,
-  };
-}
-
-function makeEdge(id: string, src: string, tgt: string, overrides: Partial<MonographEdge> = {}): MonographEdge {
-  return {
-    id,
-    sourceId: src,
-    targetId: tgt,
-    relation: 'CALLS',
-    confidence: 'EXTRACTED',
-    confidenceScore: 1.0,
-    ...overrides,
-  };
-}
-
-// ── In-memory merge ────────────────────────────────────────────────────────────
-
-describe('mergeGraphs (in-memory)', () => {
-  it('merges disjoint graphs', () => {
-    const base = { nodes: [makeNode('a')], edges: [makeEdge('e1', 'a', 'b')] };
-    const incoming = { nodes: [makeNode('b'), makeNode('c')], edges: [makeEdge('e2', 'b', 'c')] };
-    const result = mergeGraphs(base, incoming);
-    expect(result.nodes).toHaveLength(3);
-    expect(result.edges).toHaveLength(2);
-    expect(result.nodesAdded).toBe(2);
-    expect(result.edgesAdded).toBe(1);
-    expect(result.nodesSkipped).toBe(0);
-    expect(result.edgesSkipped).toBe(0);
-  });
-
-  it('skips conflicting nodes/edges by default (skip strategy)', () => {
-    const nodeA = makeNode('a', { name: 'original' });
-    const base = { nodes: [nodeA], edges: [] };
-    const nodeANew = makeNode('a', { name: 'updated' });
-    const incoming = { nodes: [nodeANew], edges: [] };
-    const result = mergeGraphs(base, incoming);
-    expect(result.nodes).toHaveLength(1);
-    expect(result.nodes[0].name).toBe('original');
-    expect(result.nodesSkipped).toBe(1);
-    expect(result.nodesAdded).toBe(0);
-  });
-
-  it('replaces conflicting nodes/edges with replace strategy', () => {
-    const nodeA = makeNode('a', { name: 'original' });
-    const base = { nodes: [nodeA], edges: [] };
-    const nodeANew = makeNode('a', { name: 'updated' });
-    const incoming = { nodes: [nodeANew], edges: [] };
-    const result = mergeGraphs(base, incoming, { onConflict: 'replace' });
-    expect(result.nodes).toHaveLength(1);
-    expect(result.nodes[0].name).toBe('updated');
-    expect(result.nodesAdded).toBe(1);
-  });
-
-  it('skips conflicting edges', () => {
-    const base = { nodes: [], edges: [makeEdge('e1', 'a', 'b')] };
-    const incoming = { nodes: [], edges: [makeEdge('e1', 'a', 'c')] }; // same id, different target
-    const result = mergeGraphs(base, incoming);
-    expect(result.edges).toHaveLength(1);
-    expect(result.edges[0].targetId).toBe('b'); // original kept
-    expect(result.edgesSkipped).toBe(1);
-  });
-});
-
-// ── DB-backed merge ────────────────────────────────────────────────────────────
-
-function insertNode(db: ReturnType<typeof openDb>, id: string, name = id) {
-  db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
-    .run(id, name, name.toLowerCase());
-}
-
-function insertEdge(db: ReturnType<typeof openDb>, id: string, src: string, tgt: string) {
-  db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
-    .run(id, src, tgt);
-}
-
-describe('mergeGraphIntoDb', () => {
-  it('inserts new nodes and edges into target db', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-
-    const incoming = {
-      nodes: [makeNode('b'), makeNode('c')],
-      edges: [makeEdge('e1', 'b', 'c')],
-    };
-    const result = mergeGraphIntoDb(db, incoming);
-    expect(result.nodesAdded).toBe(2);
-    expect(result.edgesAdded).toBe(1);
-
-    const nodeCount = (db.prepare('SELECT COUNT(*) as c FROM nodes').get() as { c: number }).c;
-    expect(nodeCount).toBe(3); // a + b + c
-    db.close();
-  });
-
-  it('skips existing nodes with default strategy', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a', 'original');
-
-    const incoming = {
-      nodes: [makeNode('a', { name: 'updated' })],
-      edges: [],
-    };
-    mergeGraphIntoDb(db, incoming);
-    const row = db.prepare('SELECT name FROM nodes WHERE id = ?').get('a') as { name: string };
-    expect(row.name).toBe('original');
-    db.close();
-  });
-
-  it('replaces existing nodes with replace strategy', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a', 'original');
-
-    const incoming = {
-      nodes: [makeNode('a', { name: 'updated', normLabel: 'updated' })],
-      edges: [],
-    };
-    mergeGraphIntoDb(db, incoming, { onConflict: 'replace' });
-    const row = db.prepare('SELECT name FROM nodes WHERE id = ?').get('a') as { name: string };
-    expect(row.name).toBe('updated');
-    db.close();
-  });
-
-  it('handles empty incoming gracefully', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    const result = mergeGraphIntoDb(db, { nodes: [], edges: [] });
-    expect(result.nodesAdded).toBe(0);
-    expect(result.edgesAdded).toBe(0);
-    db.close();
-  });
-});

package/src/__tests__/graph/node-search.test.ts

@@ -1,167 +0,0 @@
-import { describe, it, expect } from 'vitest';
-import { searchNodesByProperty, searchNodesInMemory } from '../../graph/node-search.js';
-import { openDb } from '../../storage/db.js';
-import { join } from 'path';
-import { mkdtempSync } from 'fs';
-import { tmpdir } from 'os';
-import type { MonographNode } from '../../types.js';
-
-function makeTempDb() {
-  const dir = mkdtempSync(join(tmpdir(), 'monograph-node-search-test-'));
-  return openDb(join(dir, 'test.db'));
-}
-
-function insertNode(
-  db: ReturnType<typeof openDb>,
-  id: string,
-  opts: {
-    label?: string;
-    language?: string;
-    filePath?: string;
-    isExported?: boolean;
-    communityId?: number;
-  } = {},
-) {
-  db.prepare(
-    `INSERT INTO nodes (id, label, name, norm_label, file_path, is_exported, language, community_id)
-     VALUES (?, ?, ?, ?, ?, ?, ?, ?)`,
-  ).run(
-    id,
-    opts.label ?? 'Function',
-    id,
-    id.toLowerCase(),
-    opts.filePath ?? null,
-    opts.isExported ? 1 : 0,
-    opts.language ?? null,
-    opts.communityId ?? null,
-  );
-}
-
-describe('searchNodesByProperty (DB-backed)', () => {
-  it('returns all nodes when no options given', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    const result = searchNodesByProperty(db);
-    expect(result).toHaveLength(2);
-    db.close();
-  });
-
-  it('filters by label', () => {
-    const db = makeTempDb();
-    insertNode(db, 'f1', { label: 'Function' });
-    insertNode(db, 'c1', { label: 'Class' });
-    const result = searchNodesByProperty(db, { label: 'Class' });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('c1');
-    db.close();
-  });
-
-  it('filters by language (case-insensitive)', () => {
-    const db = makeTempDb();
-    insertNode(db, 'ts1', { language: 'typescript' });
-    insertNode(db, 'py1', { language: 'python' });
-    const result = searchNodesByProperty(db, { language: 'TypeScript' });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('ts1');
-    db.close();
-  });
-
-  it('filters by file extension', () => {
-    const db = makeTempDb();
-    insertNode(db, 'f1', { filePath: '/src/foo.ts' });
-    insertNode(db, 'f2', { filePath: '/src/bar.py' });
-    const result = searchNodesByProperty(db, { fileExtension: '.ts' });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('f1');
-    db.close();
-  });
-
-  it('filters by file extension without leading dot', () => {
-    const db = makeTempDb();
-    insertNode(db, 'f1', { filePath: '/src/foo.ts' });
-    insertNode(db, 'f2', { filePath: '/src/bar.py' });
-    const result = searchNodesByProperty(db, { fileExtension: 'py' });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('f2');
-    db.close();
-  });
-
-  it('filters by filePath substring', () => {
-    const db = makeTempDb();
-    insertNode(db, 'f1', { filePath: '/src/auth/login.ts' });
-    insertNode(db, 'f2', { filePath: '/src/utils/helper.ts' });
-    const result = searchNodesByProperty(db, { filePath: 'auth' });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('f1');
-    db.close();
-  });
-
-  it('filters by isExported', () => {
-    const db = makeTempDb();
-    insertNode(db, 'exported', { isExported: true });
-    insertNode(db, 'private', { isExported: false });
-    const result = searchNodesByProperty(db, { isExported: true });
-    expect(result).toHaveLength(1);
-    expect(result[0].id).toBe('exported');
-    db.close();
-  });
-
-  it('filters by communityId', () => {
-    const db = makeTempDb();
-    insertNode(db, 'c1', { communityId: 1 });
-    insertNode(db, 'c2', { communityId: 2 });
-    insertNode(db, 'c3', { communityId: 1 });
-    const result = searchNodesByProperty(db, { communityId: 1 });
-    expect(result).toHaveLength(2);
-    db.close();
-  });
-
-  it('respects limit', () => {
-    const db = makeTempDb();
-    for (let i = 0; i < 10; i++) insertNode(db, `n${i}`);
-    const result = searchNodesByProperty(db, { limit: 3 });
-    expect(result).toHaveLength(3);
-    db.close();
-  });
-});
-
-describe('searchNodesInMemory', () => {
-  const nodes: MonographNode[] = [
-    { id: 'f1', label: 'Function', name: 'login', normLabel: 'login', filePath: '/auth/login.ts', language: 'typescript', isExported: true, communityId: 1 },
-    { id: 'f2', label: 'Class', name: 'User', normLabel: 'user', filePath: '/models/user.py', language: 'python', isExported: false, communityId: 2 },
-    { id: 'f3', label: 'Function', name: 'hash', normLabel: 'hash', filePath: '/utils/crypto.ts', language: 'typescript', isExported: true, communityId: 1 },
-  ];
-
-  it('returns all with no options', () => {
-    expect(searchNodesInMemory(nodes)).toHaveLength(3);
-  });
-
-  it('filters by label', () => {
-    expect(searchNodesInMemory(nodes, { label: 'Class' })).toHaveLength(1);
-  });
-
-  it('filters by language', () => {
-    expect(searchNodesInMemory(nodes, { language: 'Python' })).toHaveLength(1);
-  });
-
-  it('filters by fileExtension', () => {
-    expect(searchNodesInMemory(nodes, { fileExtension: '.ts' })).toHaveLength(2);
-  });
-
-  it('filters by filePath substring', () => {
-    expect(searchNodesInMemory(nodes, { filePath: 'auth' })).toHaveLength(1);
-  });
-
-  it('filters by isExported', () => {
-    expect(searchNodesInMemory(nodes, { isExported: false })).toHaveLength(1);
-  });
-
-  it('filters by communityId', () => {
-    expect(searchNodesInMemory(nodes, { communityId: 1 })).toHaveLength(2);
-  });
-
-  it('respects limit', () => {
-    expect(searchNodesInMemory(nodes, { limit: 2 })).toHaveLength(2);
-  });
-});

package/src/__tests__/graph/normalize-id.test.ts

@@ -1,102 +0,0 @@
-import { describe, it, expect } from 'vitest';
-import { normalizeId, buildNormToIdMap, reconcileEdges } from '../../graph/normalize-id.js';
-
-describe('normalizeId', () => {
-  it('lowercases the result', () => {
-    expect(normalizeId('FooBar')).toBe('foobar');
-  });
-
-  it('replaces non-alphanumeric runs with a single underscore', () => {
-    expect(normalizeId('Session_ValidateToken')).toBe('session_validatetoken');
-  });
-
-  it('collapses multiple separators', () => {
-    expect(normalizeId('My--Class::method')).toBe('my_class_method');
-  });
-
-  it('strips leading and trailing underscores', () => {
-    expect(normalizeId('_hello_')).toBe('hello');
-    expect(normalizeId('__foo__bar__')).toBe('foo_bar');
-  });
-
-  it('handles an already-clean id', () => {
-    expect(normalizeId('foo_bar_baz')).toBe('foo_bar_baz');
-  });
-
-  it('handles an empty string', () => {
-    expect(normalizeId('')).toBe('');
-  });
-});
-
-describe('buildNormToIdMap', () => {
-  it('maps normalised form to original id', () => {
-    const ids = ['Session_ValidateToken', 'auth_login', 'UserService'];
-    const map = buildNormToIdMap(ids);
-    expect(map.get('session_validatetoken')).toBe('Session_ValidateToken');
-    expect(map.get('auth_login')).toBe('auth_login');
-    expect(map.get('userservice')).toBe('UserService');
-  });
-
-  it('later entries overwrite earlier ones on collision', () => {
-    // Both normalise to 'foo'
-    const ids = ['foo', 'FOO'];
-    const map = buildNormToIdMap(ids);
-    // Last one wins
-    expect(map.get('foo')).toBe('FOO');
-  });
-});
-
-describe('reconcileEdges', () => {
-  const nodeIds = new Set(['Session_ValidateToken', 'auth_login', 'UserService']);
-
-  it('keeps edges with exact endpoint match', () => {
-    const edges = [{ source: 'Session_ValidateToken', target: 'auth_login' }];
-    const result = reconcileEdges(edges, nodeIds);
-    expect(result.resolved).toHaveLength(1);
-    expect(result.dangling).toHaveLength(0);
-    expect(result.remappedCount).toBe(0);
-  });
-
-  it('remaps edges via normalisation', () => {
-    // LLM generated "session_validatetoken" instead of "Session_ValidateToken"
-    const edges = [{ source: 'session_validatetoken', target: 'auth_login' }];
-    const result = reconcileEdges(edges, nodeIds);
-    expect(result.resolved).toHaveLength(1);
-    expect(result.resolved[0].source).toBe('Session_ValidateToken');
-    expect(result.remappedCount).toBe(1);
-  });
-
-  it('moves dangling edges to dangling list', () => {
-    const edges = [{ source: 'nonexistent', target: 'auth_login' }];
-    const result = reconcileEdges(edges, nodeIds);
-    expect(result.resolved).toHaveLength(0);
-    expect(result.dangling).toHaveLength(1);
-  });
-
-  it('handles empty edge list', () => {
-    const result = reconcileEdges([], nodeIds);
-    expect(result.resolved).toHaveLength(0);
-    expect(result.dangling).toHaveLength(0);
-    expect(result.remappedCount).toBe(0);
-  });
-
-  it('handles both endpoints requiring normalisation', () => {
-    // LLM emits ids with different casing/punctuation than the canonical form
-    // 'session_validate_token' -> normalises to 'session_validate_token' -> matches 'Session_Validate_Token'
-    // 'user--service' -> normalises to 'user_service' -> matches 'User_Service'
-    const edges = [{ source: 'session_validate_token', target: 'user_service' }];
-    const ids = new Set(['Session_Validate_Token', 'User_Service']);
-    const result = reconcileEdges(edges, ids);
-    expect(result.resolved).toHaveLength(1);
-    expect(result.resolved[0].source).toBe('Session_Validate_Token');
-    expect(result.resolved[0].target).toBe('User_Service');
-    expect(result.remappedCount).toBe(1);
-  });
-
-  it('preserves extra properties on edges', () => {
-    const edges = [{ source: 'auth_login', target: 'UserService', relation: 'CALLS', confidence: 0.9 }];
-    const result = reconcileEdges(edges, nodeIds);
-    expect(result.resolved[0].relation).toBe('CALLS');
-    expect(result.resolved[0].confidence).toBe(0.9);
-  });
-});

package/src/__tests__/graph/pagerank.test.ts

@@ -1,96 +0,0 @@
-import { describe, it, expect } from 'vitest';
-import { pageRank } from '../../graph/pagerank.js';
-import { openDb } from '../../storage/db.js';
-import Database from 'better-sqlite3';
-import { join } from 'path';
-import { mkdtempSync } from 'fs';
-import { tmpdir } from 'os';
-
-function makeTempDb() {
-  const dir = mkdtempSync(join(tmpdir(), 'monograph-pagerank-test-'));
-  return openDb(join(dir, 'test.db'));
-}
-
-function insertNode(db: Database.Database, id: string) {
-  db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
-    .run(id, id, id.toLowerCase());
-}
-
-function insertEdge(db: Database.Database, src: string, tgt: string) {
-  db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
-    .run(`${src}_${tgt}`, src, tgt);
-}
-
-describe('pageRank', () => {
-  it('returns empty map for empty graph', () => {
-    const db = makeTempDb();
-    const result = pageRank(db);
-    expect(result.size).toBe(0);
-    db.close();
-  });
-
-  it('returns score 1.0 for single node (normalized)', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    const result = pageRank(db);
-    expect(result.size).toBe(1);
-    expect(result.get('a')).toBeCloseTo(1.0, 2);
-    db.close();
-  });
-
-  it('returns scores that sum to approximately 1.0', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    insertNode(db, 'c');
-    insertEdge(db, 'a', 'b');
-    insertEdge(db, 'b', 'c');
-    const result = pageRank(db);
-    const sum = [...result.values()].reduce((acc, v) => acc + v, 0);
-    // sum of all scores should equal approximately 1.0 (probability distribution)
-    expect(sum).toBeCloseTo(1.0, 1);
-    db.close();
-  });
-
-  it('gives higher rank to nodes with more incoming edges', () => {
-    const db = makeTempDb();
-    // hub: a, b, c all point to d
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    insertNode(db, 'c');
-    insertNode(db, 'd');
-    insertEdge(db, 'a', 'd');
-    insertEdge(db, 'b', 'd');
-    insertEdge(db, 'c', 'd');
-    const result = pageRank(db);
-    const rankD = result.get('d') ?? 0;
-    const rankA = result.get('a') ?? 0;
-    expect(rankD).toBeGreaterThan(rankA);
-    db.close();
-  });
-
-  it('returns Map<string, number>', () => {
-    const db = makeTempDb();
-    insertNode(db, 'x');
-    insertNode(db, 'y');
-    insertEdge(db, 'x', 'y');
-    const result = pageRank(db);
-    expect(result instanceof Map).toBe(true);
-    for (const [k, v] of result) {
-      expect(typeof k).toBe('string');
-      expect(typeof v).toBe('number');
-      expect(v).toBeGreaterThan(0);
-    }
-    db.close();
-  });
-
-  it('accepts custom damping factor and iterations', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    insertEdge(db, 'a', 'b');
-    const result = pageRank(db, { dampingFactor: 0.5, maxIterations: 20 });
-    expect(result.size).toBe(2);
-    db.close();
-  });
-});

package/src/__tests__/graph/prune.test.ts

@@ -1,110 +0,0 @@
-import { describe, it, expect } from 'vitest';
-import { pruneDanglingEdges } from '../../graph/prune.js';
-import { openDb } from '../../storage/db.js';
-import Database from 'better-sqlite3';
-import { join } from 'path';
-import { mkdtempSync } from 'fs';
-import { tmpdir } from 'os';
-
-function makeTempDb() {
-  const dir = mkdtempSync(join(tmpdir(), 'monograph-prune-test-'));
-  return openDb(join(dir, 'test.db'));
-}
-
-function insertNode(db: Database.Database, id: string) {
-  db.prepare(`INSERT INTO nodes (id, label, name, norm_label, is_exported) VALUES (?, 'Function', ?, ?, 0)`)
-    .run(id, id, id.toLowerCase());
-}
-
-function insertEdge(db: Database.Database, src: string, tgt: string) {
-  db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
-    .run(`${src}_${tgt}`, src, tgt);
-}
-
-function insertEdgeRaw(db: Database.Database, src: string, tgt: string) {
-  // inserts edge without inserting nodes — creates dangling edge
-  // temporarily disable FK checks to allow dangling edges
-  db.pragma('foreign_keys = OFF');
-  db.prepare(`INSERT INTO edges (id, source_id, target_id, relation, confidence, confidence_score) VALUES (?, ?, ?, 'CALLS', 'EXTRACTED', 1.0)`)
-    .run(`${src}_${tgt}`, src, tgt);
-  db.pragma('foreign_keys = ON');
-}
-
-function getEdgeCount(db: Database.Database): number {
-  return (db.prepare('SELECT COUNT(*) AS n FROM edges').get() as { n: number }).n;
-}
-
-describe('pruneDanglingEdges', () => {
-  it('returns 0 pruned for empty graph', () => {
-    const db = makeTempDb();
-    const pruned = pruneDanglingEdges(db);
-    expect(pruned).toBe(0);
-    db.close();
-  });
-
-  it('returns 0 pruned when all edges reference existing nodes', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    insertEdge(db, 'a', 'b');
-    const pruned = pruneDanglingEdges(db);
-    expect(pruned).toBe(0);
-    expect(getEdgeCount(db)).toBe(1);
-    db.close();
-  });
-
-  it('removes edge with missing source node', () => {
-    const db = makeTempDb();
-    insertNode(db, 'b');
-    insertEdgeRaw(db, 'ghost', 'b');
-    expect(getEdgeCount(db)).toBe(1);
-    const pruned = pruneDanglingEdges(db);
-    expect(pruned).toBe(1);
-    expect(getEdgeCount(db)).toBe(0);
-    db.close();
-  });
-
-  it('removes edge with missing target node', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertEdgeRaw(db, 'a', 'missing');
-    expect(getEdgeCount(db)).toBe(1);
-    const pruned = pruneDanglingEdges(db);
-    expect(pruned).toBe(1);
-    expect(getEdgeCount(db)).toBe(0);
-    db.close();
-  });
-
-  it('removes multiple dangling edges', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertNode(db, 'b');
-    insertEdge(db, 'a', 'b');       // valid
-    insertEdgeRaw(db, 'ghost1', 'a'); // dangling source
-    insertEdgeRaw(db, 'b', 'ghost2'); // dangling target
-    expect(getEdgeCount(db)).toBe(3);
-    const pruned = pruneDanglingEdges(db);
-    expect(pruned).toBe(2);
-    expect(getEdgeCount(db)).toBe(1);
-    db.close();
-  });
-
-  it('returns the count of pruned edges', () => {
-    const db = makeTempDb();
-    insertEdgeRaw(db, 'x', 'y'); // both nodes missing
-    const pruned = pruneDanglingEdges(db);
-    expect(typeof pruned).toBe('number');
-    expect(pruned).toBe(1);
-    db.close();
-  });
-
-  it('is idempotent — second call returns 0', () => {
-    const db = makeTempDb();
-    insertNode(db, 'a');
-    insertEdgeRaw(db, 'a', 'missing');
-    pruneDanglingEdges(db);
-    const second = pruneDanglingEdges(db);
-    expect(second).toBe(0);
-    db.close();
-  });
-});