@monoes/monograph 1.5.3 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (500) hide show
  1. package/.monodesign/hook.cache.json +1 -1
  2. package/__tests__/integration/call-attribution.test.ts +116 -0
  3. package/coverage/base.css +224 -0
  4. package/coverage/block-navigation.js +87 -0
  5. package/coverage/coverage-summary.json +399 -0
  6. package/coverage/favicon.png +0 -0
  7. package/coverage/index.html +881 -0
  8. package/coverage/prettify.css +1 -0
  9. package/coverage/prettify.js +2 -0
  10. package/coverage/sort-arrow-sprite.png +0 -0
  11. package/coverage/sorter.js +210 -0
  12. package/coverage/src/analysis/benchmark.ts.html +481 -0
  13. package/coverage/src/analysis/changed-files.ts.html +304 -0
  14. package/coverage/src/analysis/changed-workspaces.ts.html +367 -0
  15. package/coverage/src/analysis/churn-cache.ts.html +622 -0
  16. package/coverage/src/analysis/churn-trend.ts.html +256 -0
  17. package/coverage/src/analysis/churn.ts.html +874 -0
  18. package/coverage/src/analysis/cluster-quality.ts.html +511 -0
  19. package/coverage/src/analysis/combined.ts.html +208 -0
  20. package/coverage/src/analysis/corpus-health.ts.html +208 -0
  21. package/coverage/src/analysis/coverage-gaps.ts.html +823 -0
  22. package/coverage/src/analysis/dep-classification.ts.html +586 -0
  23. package/coverage/src/analysis/dependency-health.ts.html +523 -0
  24. package/coverage/src/analysis/duplicate-exports.ts.html +415 -0
  25. package/coverage/src/analysis/fallow-suppression.ts.html +379 -0
  26. package/coverage/src/analysis/feature-flags-config.ts.html +226 -0
  27. package/coverage/src/analysis/feature-flags.ts.html +754 -0
  28. package/coverage/src/analysis/file-classifier.ts.html +346 -0
  29. package/coverage/src/analysis/git-changed-files.ts.html +271 -0
  30. package/coverage/src/analysis/health-baseline.ts.html +325 -0
  31. package/coverage/src/analysis/index.html +641 -0
  32. package/coverage/src/analysis/issue-filters.ts.html +253 -0
  33. package/coverage/src/analysis/list.ts.html +307 -0
  34. package/coverage/src/analysis/node-similarity.ts.html +430 -0
  35. package/coverage/src/analysis/private-type-leaks.ts.html +442 -0
  36. package/coverage/src/analysis/progress.ts.html +214 -0
  37. package/coverage/src/analysis/project-state.ts.html +370 -0
  38. package/coverage/src/analysis/regression-config.ts.html +193 -0
  39. package/coverage/src/analysis/rule-overrides.ts.html +328 -0
  40. package/coverage/src/analysis/scripts.ts.html +370 -0
  41. package/coverage/src/analysis/shape-extractor.ts.html +691 -0
  42. package/coverage/src/analysis/since-duration.ts.html +211 -0
  43. package/coverage/src/analysis/suppression-context.ts.html +370 -0
  44. package/coverage/src/analysis/suppressions.ts.html +325 -0
  45. package/coverage/src/analysis/surprise-scorer.ts.html +307 -0
  46. package/coverage/src/analysis/targets.ts.html +796 -0
  47. package/coverage/src/analysis/unused-class-members.ts.html +322 -0
  48. package/coverage/src/analysis/workspace-filter.ts.html +352 -0
  49. package/coverage/src/analyze/boundary-analysis.ts.html +472 -0
  50. package/coverage/src/analyze/index.html +161 -0
  51. package/coverage/src/analyze/predicates/file.ts.html +343 -0
  52. package/coverage/src/analyze/predicates/import.ts.html +355 -0
  53. package/coverage/src/analyze/predicates/index.html +146 -0
  54. package/coverage/src/analyze/predicates/lifecycle.ts.html +250 -0
  55. package/coverage/src/analyze/unused-deps.ts.html +295 -0
  56. package/coverage/src/analyze/unused-exports.ts.html +520 -0
  57. package/coverage/src/analyze/unused-files.ts.html +223 -0
  58. package/coverage/src/api/index.html +131 -0
  59. package/coverage/src/api/production-override.ts.html +274 -0
  60. package/coverage/src/api/programmatic.ts.html +439 -0
  61. package/coverage/src/audit.ts.html +787 -0
  62. package/coverage/src/cache/augment-cache.ts.html +274 -0
  63. package/coverage/src/cache/extraction-cache.ts.html +508 -0
  64. package/coverage/src/cache/index.html +131 -0
  65. package/coverage/src/check/filtering.ts.html +319 -0
  66. package/coverage/src/check/index.html +161 -0
  67. package/coverage/src/check/index.ts.html +382 -0
  68. package/coverage/src/check/output.ts.html +322 -0
  69. package/coverage/src/check/rules.ts.html +268 -0
  70. package/coverage/src/ci-template.ts.html +337 -0
  71. package/coverage/src/claude-cli.ts.html +262 -0
  72. package/coverage/src/cli/ai-context.ts.html +664 -0
  73. package/coverage/src/cli/augment.ts.html +427 -0
  74. package/coverage/src/cli/check-update.ts.html +205 -0
  75. package/coverage/src/cli/doctor.ts.html +631 -0
  76. package/coverage/src/cli/eval-server.ts.html +463 -0
  77. package/coverage/src/cli/hooks-install.ts.html +691 -0
  78. package/coverage/src/cli/index.html +221 -0
  79. package/coverage/src/cli/setup.ts.html +676 -0
  80. package/coverage/src/cli/skill-gen.ts.html +1126 -0
  81. package/coverage/src/commands/flags.ts.html +301 -0
  82. package/coverage/src/commands/index.html +116 -0
  83. package/coverage/src/config/boundary-config.ts.html +634 -0
  84. package/coverage/src/config/cli-schema.ts.html +328 -0
  85. package/coverage/src/config/config-parsing.ts.html +391 -0
  86. package/coverage/src/config/duplicates-config.ts.html +271 -0
  87. package/coverage/src/config/external-plugin.ts.html +316 -0
  88. package/coverage/src/config/health-config.ts.html +211 -0
  89. package/coverage/src/config/ignore-exports-used-in-file.ts.html +223 -0
  90. package/coverage/src/config/index.html +341 -0
  91. package/coverage/src/config/migration-types.ts.html +304 -0
  92. package/coverage/src/config/output-format.ts.html +157 -0
  93. package/coverage/src/config/plugins/builtin.ts.html +1318 -0
  94. package/coverage/src/config/plugins/index.html +146 -0
  95. package/coverage/src/config/plugins/registry.ts.html +316 -0
  96. package/coverage/src/config/plugins/types.ts.html +127 -0
  97. package/coverage/src/config/resolution.ts.html +391 -0
  98. package/coverage/src/config/rules.ts.html +295 -0
  99. package/coverage/src/config/schema-gen.ts.html +430 -0
  100. package/coverage/src/config/types.ts.html +532 -0
  101. package/coverage/src/config/used-class-members.ts.html +244 -0
  102. package/coverage/src/config/validate.ts.html +409 -0
  103. package/coverage/src/config/workspace.ts.html +496 -0
  104. package/coverage/src/coverage/cloud-client.ts.html +418 -0
  105. package/coverage/src/coverage/index.html +146 -0
  106. package/coverage/src/coverage/upload-inventory.ts.html +337 -0
  107. package/coverage/src/coverage/upload-source-maps.ts.html +376 -0
  108. package/coverage/src/discover/entry-points.ts.html +238 -0
  109. package/coverage/src/discover/index.html +131 -0
  110. package/coverage/src/discover/infrastructure-entries.ts.html +610 -0
  111. package/coverage/src/duplicates/detect/concatenation.ts.html +196 -0
  112. package/coverage/src/duplicates/detect/extraction.ts.html +406 -0
  113. package/coverage/src/duplicates/detect/filtering.ts.html +421 -0
  114. package/coverage/src/duplicates/detect/index.html +206 -0
  115. package/coverage/src/duplicates/detect/lcp.ts.html +166 -0
  116. package/coverage/src/duplicates/detect/ranking.ts.html +133 -0
  117. package/coverage/src/duplicates/detect/statistics.ts.html +292 -0
  118. package/coverage/src/duplicates/detect/suffix-array.ts.html +349 -0
  119. package/coverage/src/duplicates/families.ts.html +370 -0
  120. package/coverage/src/duplicates/index.html +161 -0
  121. package/coverage/src/duplicates/normalize.ts.html +259 -0
  122. package/coverage/src/duplicates/shingle-filter.ts.html +196 -0
  123. package/coverage/src/duplicates/token-types.ts.html +271 -0
  124. package/coverage/src/duplicates/tokenize/index.html +116 -0
  125. package/coverage/src/duplicates/tokenize/index.ts.html +397 -0
  126. package/coverage/src/error/fallow-error.ts.html +367 -0
  127. package/coverage/src/error/index.html +116 -0
  128. package/coverage/src/error.ts.html +226 -0
  129. package/coverage/src/export/adjacency-matrix.ts.html +466 -0
  130. package/coverage/src/export/analysis-json.ts.html +346 -0
  131. package/coverage/src/export/badge.ts.html +400 -0
  132. package/coverage/src/export/canvas.ts.html +211 -0
  133. package/coverage/src/export/codeclimate.ts.html +688 -0
  134. package/coverage/src/export/compact-health.ts.html +442 -0
  135. package/coverage/src/export/compact.ts.html +334 -0
  136. package/coverage/src/export/csv.ts.html +184 -0
  137. package/coverage/src/export/cypher.ts.html +184 -0
  138. package/coverage/src/export/dot.ts.html +241 -0
  139. package/coverage/src/export/gexf.ts.html +262 -0
  140. package/coverage/src/export/graphml.ts.html +235 -0
  141. package/coverage/src/export/html.ts.html +1729 -0
  142. package/coverage/src/export/index.html +401 -0
  143. package/coverage/src/export/index.ts.html +112 -0
  144. package/coverage/src/export/json.ts.html +193 -0
  145. package/coverage/src/export/markdown.ts.html +955 -0
  146. package/coverage/src/export/mermaid.ts.html +385 -0
  147. package/coverage/src/export/obsidian.ts.html +217 -0
  148. package/coverage/src/export/sarif.ts.html +820 -0
  149. package/coverage/src/export/svg.ts.html +289 -0
  150. package/coverage/src/fix/deps.ts.html +295 -0
  151. package/coverage/src/fix/enum-members.ts.html +394 -0
  152. package/coverage/src/fix/export-surgery.ts.html +676 -0
  153. package/coverage/src/fix/exports.ts.html +364 -0
  154. package/coverage/src/fix/index.html +176 -0
  155. package/coverage/src/fix/orchestrator.ts.html +286 -0
  156. package/coverage/src/graph/analyzer.ts.html +292 -0
  157. package/coverage/src/graph/author-analytics.ts.html +736 -0
  158. package/coverage/src/graph/baseline.ts.html +1381 -0
  159. package/coverage/src/graph/clone-families.ts.html +481 -0
  160. package/coverage/src/graph/codeowners-extended.ts.html +427 -0
  161. package/coverage/src/graph/codeowners-gitlab.ts.html +535 -0
  162. package/coverage/src/graph/codeowners.ts.html +736 -0
  163. package/coverage/src/graph/complexity.ts.html +685 -0
  164. package/coverage/src/graph/cross-reference-findings.ts.html +340 -0
  165. package/coverage/src/graph/cross-reference.ts.html +502 -0
  166. package/coverage/src/graph/cycle-detection.ts.html +1018 -0
  167. package/coverage/src/graph/cycles.ts.html +751 -0
  168. package/coverage/src/graph/dead-code.ts.html +469 -0
  169. package/coverage/src/graph/dependency-closure.ts.html +463 -0
  170. package/coverage/src/graph/dfs.ts.html +439 -0
  171. package/coverage/src/graph/diff.ts.html +361 -0
  172. package/coverage/src/graph/duplication-stats.ts.html +322 -0
  173. package/coverage/src/graph/edge-filter.ts.html +436 -0
  174. package/coverage/src/graph/explain.ts.html +484 -0
  175. package/coverage/src/graph/external-style-usage.ts.html +328 -0
  176. package/coverage/src/graph/health-score.ts.html +622 -0
  177. package/coverage/src/graph/hotspots.ts.html +742 -0
  178. package/coverage/src/graph/import-chain.ts.html +529 -0
  179. package/coverage/src/graph/index.html +746 -0
  180. package/coverage/src/graph/loader.ts.html +217 -0
  181. package/coverage/src/graph/maintainability.ts.html +553 -0
  182. package/coverage/src/graph/merge.ts.html +607 -0
  183. package/coverage/src/graph/mirrored-dirs.ts.html +691 -0
  184. package/coverage/src/graph/narrowing.ts.html +361 -0
  185. package/coverage/src/graph/node-search.ts.html +688 -0
  186. package/coverage/src/graph/node-types.ts.html +286 -0
  187. package/coverage/src/graph/normalize-id.ts.html +499 -0
  188. package/coverage/src/graph/pagerank.ts.html +580 -0
  189. package/coverage/src/graph/prune.ts.html +370 -0
  190. package/coverage/src/graph/re-exports/index.html +116 -0
  191. package/coverage/src/graph/re-exports/propagate.ts.html +370 -0
  192. package/coverage/src/graph/reachability.ts.html +382 -0
  193. package/coverage/src/graph/regex-search.ts.html +781 -0
  194. package/coverage/src/graph/regression.ts.html +682 -0
  195. package/coverage/src/graph/resolve/discover-types.ts.html +220 -0
  196. package/coverage/src/graph/resolve/dynamic-imports.ts.html +391 -0
  197. package/coverage/src/graph/resolve/fallbacks.ts.html +322 -0
  198. package/coverage/src/graph/resolve/index.html +281 -0
  199. package/coverage/src/graph/resolve/index.ts.html +289 -0
  200. package/coverage/src/graph/resolve/path-info.ts.html +208 -0
  201. package/coverage/src/graph/resolve/re-exports.ts.html +127 -0
  202. package/coverage/src/graph/resolve/react-native.ts.html +166 -0
  203. package/coverage/src/graph/resolve/require-imports.ts.html +139 -0
  204. package/coverage/src/graph/resolve/specifier.ts.html +445 -0
  205. package/coverage/src/graph/resolve/static-imports.ts.html +127 -0
  206. package/coverage/src/graph/resolve/types.ts.html +409 -0
  207. package/coverage/src/graph/resolve/upgrades.ts.html +181 -0
  208. package/coverage/src/graph/ripple-impact.ts.html +478 -0
  209. package/coverage/src/graph/risk-profile.ts.html +622 -0
  210. package/coverage/src/graph/statistics.ts.html +580 -0
  211. package/coverage/src/graph/stats.ts.html +556 -0
  212. package/coverage/src/graph/subgraph.ts.html +571 -0
  213. package/coverage/src/graph/topo-sort.ts.html +598 -0
  214. package/coverage/src/graph/wcc.ts.html +646 -0
  215. package/coverage/src/groups/contract-bridge.ts.html +394 -0
  216. package/coverage/src/groups/contract-registry.ts.html +874 -0
  217. package/coverage/src/groups/group-config.ts.html +409 -0
  218. package/coverage/src/groups/group-search.ts.html +502 -0
  219. package/coverage/src/groups/group-sync.ts.html +331 -0
  220. package/coverage/src/groups/grpc-extractor.ts.html +277 -0
  221. package/coverage/src/groups/index.html +221 -0
  222. package/coverage/src/groups/service-boundary.ts.html +442 -0
  223. package/coverage/src/groups/topic-extractor.ts.html +355 -0
  224. package/coverage/src/health/analysis-counts-snapshot.ts.html +256 -0
  225. package/coverage/src/health/analysis-counts.ts.html +295 -0
  226. package/coverage/src/health/complexity-findings.ts.html +430 -0
  227. package/coverage/src/health/distribution-thresholds.ts.html +247 -0
  228. package/coverage/src/health/grouping.ts.html +499 -0
  229. package/coverage/src/health/health-grouping.ts.html +343 -0
  230. package/coverage/src/health/health-report-types.ts.html +580 -0
  231. package/coverage/src/health/health-report.ts.html +328 -0
  232. package/coverage/src/health/health-score.ts.html +280 -0
  233. package/coverage/src/health/hotspot-utils.ts.html +250 -0
  234. package/coverage/src/health/hotspots.ts.html +397 -0
  235. package/coverage/src/health/index.html +551 -0
  236. package/coverage/src/health/large-functions.ts.html +187 -0
  237. package/coverage/src/health/ownership-metrics.ts.html +268 -0
  238. package/coverage/src/health/ownership-risk.ts.html +379 -0
  239. package/coverage/src/health/ownership.ts.html +607 -0
  240. package/coverage/src/health/quality-gate.ts.html +256 -0
  241. package/coverage/src/health/risk-profile.ts.html +202 -0
  242. package/coverage/src/health/runtime-coverage-report.ts.html +388 -0
  243. package/coverage/src/health/runtime-coverage.ts.html +298 -0
  244. package/coverage/src/health/scores.ts.html +301 -0
  245. package/coverage/src/health/scoring-types.ts.html +229 -0
  246. package/coverage/src/health/target-thresholds.ts.html +361 -0
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  249. package/coverage/src/health/timings.ts.html +343 -0
  250. package/coverage/src/health/trend-types.ts.html +256 -0
  251. package/coverage/src/health/trends.ts.html +343 -0
  252. package/coverage/src/health/vital-signs-compute.ts.html +409 -0
  253. package/coverage/src/health/vital-signs-snapshot.ts.html +301 -0
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  255. package/coverage/src/index.html +191 -0
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  257. package/coverage/src/ingest/git-clone.ts.html +823 -0
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  259. package/coverage/src/ingest/query-memory.ts.html +481 -0
  260. package/coverage/src/ingest/transcribe.ts.html +847 -0
  261. package/coverage/src/ingest/url-ingest.ts.html +346 -0
  262. package/coverage/src/init/agent-hooks.ts.html +343 -0
  263. package/coverage/src/init/git-hooks.ts.html +298 -0
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  265. package/coverage/src/init/project-detection.ts.html +400 -0
  266. package/coverage/src/license/index.html +116 -0
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  268. package/coverage/src/lsp/code-actions.ts.html +466 -0
  269. package/coverage/src/lsp/code-lens.ts.html +253 -0
  270. package/coverage/src/lsp/diagnostics-ext.ts.html +535 -0
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  275. package/coverage/src/lsp/server.ts.html +847 -0
  276. package/coverage/src/mcp/index.html +146 -0
  277. package/coverage/src/mcp/params.ts.html +688 -0
  278. package/coverage/src/mcp/resources.ts.html +457 -0
  279. package/coverage/src/mcp/tool-builders.ts.html +694 -0
  280. package/coverage/src/mcp-resources/communities-resource.ts.html +301 -0
  281. package/coverage/src/mcp-resources/graph-resource.ts.html +127 -0
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  284. package/coverage/src/mcp-resources/named-cluster-resource.ts.html +190 -0
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  290. package/coverage/src/mcp-resources/wiki-resource.ts.html +154 -0
  291. package/coverage/src/mcp-tools/api-impact.ts.html +628 -0
  292. package/coverage/src/mcp-tools/context.ts.html +418 -0
  293. package/coverage/src/mcp-tools/cypher.ts.html +172 -0
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  299. package/coverage/src/mcp-tools/group-sync.ts.html +181 -0
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  303. package/coverage/src/mcp-tools/list-repos.ts.html +199 -0
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  310. package/coverage/src/mcp-tools/staleness.ts.html +124 -0
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  312. package/coverage/src/mcp-tools/wiki-build.ts.html +196 -0
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+ <span class="cline-any cline-no">&nbsp;</span>
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+ <span class="cline-any cline-no">&nbsp;</span>
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+ <span class="cline-any cline-no">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-no">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span>
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+ <span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import { readFileSync, statSync } from 'fs';
681
+ import { extname, basename, join } from 'path';
682
+ import type { PipelinePhase, PipelineContext } from '../types.js';
683
+ import type { MonographNode, MonographEdge } from '../../types.js';
684
+ import { makeId, toNormLabel, CONFIDENCE_SCORE } from '../../types.js';
685
+ import { insertNodes } from '../../storage/node-store.js';
686
+ import { insertEdges } from '../../storage/edge-store.js';
687
+ import type { StructureOutput } from './structure.js';
688
+ &nbsp;
689
+ const DOC_EXTENSIONS = <span class="cstat-no" title="statement not covered" >new Set(['.md', '.mdx', '.txt', '.rst']);</span>
690
+ &nbsp;
691
+ interface HeadingEntry {
692
+ level: number;
693
+ title: string;
694
+ startLine: number;
695
+ endLine: number;
696
+ content: string;
697
+ }
698
+ &nbsp;
699
+ interface LinkRef {
700
+ target: string;
701
+ isWiki: boolean;
702
+ }
703
+ &nbsp;
704
+ export interface DocsParseOutput {
705
+ sectionNodes: MonographNode[];
706
+ docFiles: number;
707
+ }
708
+ &nbsp;
709
+ // ── Frontmatter ───────────────────────────────────────────────────────────────
710
+ &nbsp;
711
+ function <span class="fstat-no" title="function not covered" >parseFrontmatter(t</span>ext: string): { meta: Record&lt;string, unknown&gt;; body: string; lineOffset: number } {
712
+ const fmMatch = <span class="cstat-no" title="statement not covered" >text.match(/^---\r?\n([\s\S]*?)\r?\n---\r?\n/);</span>
713
+ <span class="cstat-no" title="statement not covered" > if (!fmMatch) <span class="cstat-no" title="statement not covered" >return { meta: {}, body: text, lineOffset: 0 };</span></span>
714
+ &nbsp;
715
+ const yaml = <span class="cstat-no" title="statement not covered" >fmMatch[1];</span>
716
+ const meta: Record&lt;string, unknown&gt; = <span class="cstat-no" title="statement not covered" >{};</span>
717
+ let currentKey: string | null = <span class="cstat-no" title="statement not covered" >null;</span>
718
+ &nbsp;
719
+ <span class="cstat-no" title="statement not covered" > for (const line of yaml.split('\n')) {</span>
720
+ const keyOnlyMatch = <span class="cstat-no" title="statement not covered" >line.match(/^(\w[\w-]*)\s*:\s*$/);</span>
721
+ <span class="cstat-no" title="statement not covered" > if (keyOnlyMatch) {</span>
722
+ <span class="cstat-no" title="statement not covered" > currentKey = keyOnlyMatch[1];</span>
723
+ <span class="cstat-no" title="statement not covered" > meta[currentKey] = [];</span>
724
+ <span class="cstat-no" title="statement not covered" > continue;</span>
725
+ }
726
+ const itemMatch = <span class="cstat-no" title="statement not covered" >line.match(/^\s+-\s+(.+)$/);</span>
727
+ <span class="cstat-no" title="statement not covered" > if (itemMatch &amp;&amp; currentKey &amp;&amp; Array.isArray(meta[currentKey])) {</span>
728
+ <span class="cstat-no" title="statement not covered" > (meta[currentKey] as string[]).push(itemMatch[1].trim().replace(/^["']|["']$/g, ''));</span>
729
+ <span class="cstat-no" title="statement not covered" > continue;</span>
730
+ }
731
+ <span class="cstat-no" title="statement not covered" > if (line &amp;&amp; !line.match(/^\s/)) <span class="cstat-no" title="statement not covered" >currentKey = null;</span></span>
732
+ const kvMatch = <span class="cstat-no" title="statement not covered" >line.match(/^(\w[\w-]*)\s*:\s*(.+)$/);</span>
733
+ <span class="cstat-no" title="statement not covered" > if (!kvMatch) <span class="cstat-no" title="statement not covered" >continue;</span></span>
734
+ const key = <span class="cstat-no" title="statement not covered" >kvMatch[1];</span>
735
+ const val = <span class="cstat-no" title="statement not covered" >kvMatch[2].trim();</span>
736
+ <span class="cstat-no" title="statement not covered" > if (val.startsWith('[')) {</span>
737
+ <span class="cstat-no" title="statement not covered" > meta[key] = val.slice(1, -1).split(',').<span class="fstat-no" title="function not covered" >map(s</span> =&gt; <span class="cstat-no" title="statement not covered" >s.trim().replace(/^["']|["']$/g, ''))</span>;</span>
738
+ } else {
739
+ <span class="cstat-no" title="statement not covered" > meta[key] = val.replace(/^["']|["']$/g, '');</span>
740
+ }
741
+ }
742
+ &nbsp;
743
+ const lineOffset = <span class="cstat-no" title="statement not covered" >fmMatch[0].split('\n').length - 1;</span>
744
+ <span class="cstat-no" title="statement not covered" > return { meta, body: text.slice(fmMatch[0].length), lineOffset };</span>
745
+ }
746
+ &nbsp;
747
+ // ── Heading extraction ────────────────────────────────────────────────────────
748
+ &nbsp;
749
+ function <span class="fstat-no" title="function not covered" >extractHeadings(b</span>ody: string, lineOffset: number): HeadingEntry[] {
750
+ const lines = <span class="cstat-no" title="statement not covered" >body.split('\n');</span>
751
+ const positions: Array&lt;{ level: number; title: string; idx: number }&gt; = <span class="cstat-no" title="statement not covered" >[];</span>
752
+ &nbsp;
753
+ <span class="cstat-no" title="statement not covered" > for (let i = <span class="cstat-no" title="statement not covered" >0; i</span> &lt; lines.length; i++) {</span>
754
+ const m = <span class="cstat-no" title="statement not covered" >lines[i].match(/^(#{1,6})\s+(.+?)(?:\s+#+)?$/);</span>
755
+ <span class="cstat-no" title="statement not covered" > if (m) <span class="cstat-no" title="statement not covered" >positions.push({ level: m[1].length, title: m[2].trim(), idx: i });</span></span>
756
+ }
757
+ &nbsp;
758
+ <span class="cstat-no" title="statement not covered" > return positions.<span class="fstat-no" title="function not covered" >map((h</span>, i) =&gt; {</span>
759
+ const nextIdx = <span class="cstat-no" title="statement not covered" >positions[i + 1]?.idx ?? lines.length;</span>
760
+ <span class="cstat-no" title="statement not covered" > return {</span>
761
+ level: h.level,
762
+ title: h.title,
763
+ startLine: lineOffset + h.idx + 1,
764
+ endLine: lineOffset + nextIdx,
765
+ content: lines.slice(h.idx + 1, nextIdx).join('\n').trim(),
766
+ };
767
+ });
768
+ }
769
+ &nbsp;
770
+ // ── Link extraction ───────────────────────────────────────────────────────────
771
+ &nbsp;
772
+ function <span class="fstat-no" title="function not covered" >extractLinks(t</span>ext: string): LinkRef[] {
773
+ const links: LinkRef[] = <span class="cstat-no" title="statement not covered" >[];</span>
774
+ <span class="cstat-no" title="statement not covered" > for (const m of text.matchAll(/\[\[([^\]|#]+)(?:[|#][^\]]+)?\]\]/g)) {</span>
775
+ <span class="cstat-no" title="statement not covered" > links.push({ target: m[1].trim(), isWiki: true });</span>
776
+ }
777
+ <span class="cstat-no" title="statement not covered" > for (const m of text.matchAll(/\[[^\]]+\]\(([^)]+\.mdx?(?:#[^)]*)?)\)/g)) {</span>
778
+ const href = <span class="cstat-no" title="statement not covered" >m[1].split('#')[0].trim();</span>
779
+ <span class="cstat-no" title="statement not covered" > if (!href.startsWith('http')) <span class="cstat-no" title="statement not covered" >links.push({ target: href, isWiki: false });</span></span>
780
+ }
781
+ <span class="cstat-no" title="statement not covered" > return links;</span>
782
+ }
783
+ &nbsp;
784
+ // ── Tag extraction ────────────────────────────────────────────────────────────
785
+ &nbsp;
786
+ function <span class="fstat-no" title="function not covered" >extractTags(t</span>ext: string, meta: Record&lt;string, unknown&gt;): string[] {
787
+ const tags = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;();</span>
788
+ <span class="cstat-no" title="statement not covered" > for (const key of ['tags', 'tag', 'categories', 'category']) {</span>
789
+ const v = <span class="cstat-no" title="statement not covered" >meta[key];</span>
790
+ <span class="cstat-no" title="statement not covered" > if (Array.isArray(v)) <span class="cstat-no" title="statement not covered" >v.<span class="fstat-no" title="function not covered" >forEach(t</span> =&gt; <span class="cstat-no" title="statement not covered" >typeof t === 'string' &amp;&amp; tags.add(t.toLowerCase()))</span>;</span></span>
791
+ else <span class="cstat-no" title="statement not covered" >if (typeof v === 'string') <span class="cstat-no" title="statement not covered" >tags.add(v.toLowerCase());</span></span>
792
+ }
793
+ <span class="cstat-no" title="statement not covered" > for (const m of text.matchAll(/(?&lt;![a-z0-9])#([a-z][a-z0-9_-]+)/gi)) {</span>
794
+ <span class="cstat-no" title="statement not covered" > tags.add(m[1].toLowerCase());</span>
795
+ }
796
+ <span class="cstat-no" title="statement not covered" > return [...tags];</span>
797
+ }
798
+ &nbsp;
799
+ // ── Phase ─────────────────────────────────────────────────────────────────────
800
+ &nbsp;
801
+ export const docsParsePhase: PipelinePhase&lt;DocsParseOutput&gt; = <span class="cstat-no" title="statement not covered" >{</span>
802
+ name: 'docs-parse',
803
+ deps: ['structure'],
804
+ &nbsp;
805
+ async <span class="fstat-no" title="function not covered" >execute(c</span>tx, deps) {
806
+ // Respect codeOnly flag
807
+ <span class="cstat-no" title="statement not covered" > if (ctx.options.codeOnly) <span class="cstat-no" title="statement not covered" >return { sectionNodes: [], docFiles: 0 };</span></span>
808
+ &nbsp;
809
+ const { fileNodes } = <span class="cstat-no" title="statement not covered" >deps.get('structure') as StructureOutput;</span>
810
+ const docFiles = <span class="cstat-no" title="statement not covered" >fileNodes.<span class="fstat-no" title="function not covered" >filter(n</span> =&gt; <span class="cstat-no" title="statement not covered" >n.filePath &amp;&amp; DOC_EXTENSIONS.has(extname(n.filePath).toLowerCase()))</span>;</span>
811
+ <span class="cstat-no" title="statement not covered" > if (docFiles.length === 0) <span class="cstat-no" title="statement not covered" >return { sectionNodes: [], docFiles: 0 };</span></span>
812
+ &nbsp;
813
+ const fileByRel = <span class="cstat-no" title="statement not covered" >new Map&lt;string, MonographNode&gt;(docFiles.<span class="fstat-no" title="function not covered" >map(n</span> =&gt; <span class="cstat-no" title="statement not covered" >[n.filePath!, n])</span>);</span>
814
+ const fileByName = <span class="cstat-no" title="statement not covered" >new Map&lt;string, MonographNode&gt;(</span>
815
+ docFiles.<span class="fstat-no" title="function not covered" >map(n</span> =&gt; <span class="cstat-no" title="statement not covered" >[basename(n.filePath!).replace(/\.mdx?$/, '').toLowerCase(), n])</span>
816
+ );
817
+ &nbsp;
818
+ const sectionNodes: MonographNode[] = <span class="cstat-no" title="statement not covered" >[];</span>
819
+ // Key: `${fileId}::${normTitle}` to avoid cross-file title collisions
820
+ const sectionByKey = <span class="cstat-no" title="statement not covered" >new Map&lt;string, MonographNode&gt;();</span>
821
+ const conceptNodes = <span class="cstat-no" title="statement not covered" >new Map&lt;string, MonographNode&gt;();</span>
822
+ const allEdges: MonographEdge[] = <span class="cstat-no" title="statement not covered" >[];</span>
823
+ const deferredRefs: Array&lt;{ sourceId: string; fileId: string; target: string; isWiki: boolean }&gt; = <span class="cstat-no" title="statement not covered" >[];</span>
824
+ &nbsp;
825
+ <span class="cstat-no" title="statement not covered" > for (const fileNode of docFiles) {</span>
826
+ const <span class="cstat-no" title="statement not covered" >absPath = join(ctx.repoPath, fileNode.filePath!);</span>
827
+ let text: string;
828
+ <span class="cstat-no" title="statement not covered" > try {</span>
829
+ const <span class="cstat-no" title="statement not covered" >st = statSync(absPath);</span>
830
+ <span class="cstat-no" title="statement not covered" > if (st.size &gt; ctx.options.maxFileSizeBytes) <span class="cstat-no" title="statement not covered" >continue;</span></span>
831
+ <span class="cstat-no" title="statement not covered" > text = readFileSync(absPath, 'utf-8');</span>
832
+ } catch { <span class="cstat-no" title="statement not covered" >continue; }</span>
833
+ &nbsp;
834
+ const { meta, body, lineOffset } = <span class="cstat-no" title="statement not covered" >parseFrontmatter(text);</span>
835
+ const headings = <span class="cstat-no" title="statement not covered" >extractHeadings(body, lineOffset);</span>
836
+ const fileTags = <span class="cstat-no" title="statement not covered" >extractTags('', meta);</span>
837
+ &nbsp;
838
+ // No headings → single Section node for the whole file
839
+ <span class="cstat-no" title="statement not covered" > if (headings.length === 0) {</span>
840
+ const title = (<span class="cstat-no" title="statement not covered" >meta['title'] as string | undefined) ?? basename(fileNode.filePath!).replace(/\.[^.]+$/, '');</span>
841
+ const <span class="cstat-no" title="statement not covered" >sectionId = makeId('section', fileNode.id, 'root');</span>
842
+ const node: MonographNode = <span class="cstat-no" title="statement not covered" >{</span>
843
+ id: sectionId, label: 'Section',
844
+ name: title, normLabel: toNormLabel(title),
845
+ filePath: fileNode.filePath, startLine: 1, endLine: text.split('\n').length,
846
+ isExported: false,
847
+ properties: { ...meta, level: 0, content: body.slice(0, 2000) },
848
+ };
849
+ <span class="cstat-no" title="statement not covered" > sectionNodes.push(node);</span>
850
+ <span class="cstat-no" title="statement not covered" > sectionByKey.set(`${fileNode.id}::${toNormLabel(title)}`, node);</span>
851
+ &nbsp;
852
+ <span class="cstat-no" title="statement not covered" > allEdges.push({</span>
853
+ id: makeId(fileNode.id, sectionId, 'defines'),
854
+ sourceId: fileNode.id, targetId: sectionId,
855
+ relation: 'DEFINES', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
856
+ });
857
+ &nbsp;
858
+ <span class="cstat-no" title="statement not covered" > wireTagEdges(sectionId, fileTags, conceptNodes, allEdges);</span>
859
+ <span class="cstat-no" title="statement not covered" > for (const lnk of extractLinks(body)) <span class="cstat-no" title="statement not covered" >deferredRefs.push({ sourceId: sectionId, fileId: fileNode.id, ...lnk });</span></span>
860
+ <span class="cstat-no" title="statement not covered" > continue;</span>
861
+ }
862
+ &nbsp;
863
+ // Preamble content: text before the first heading
864
+ const firstHeadingStart = <span class="cstat-no" title="statement not covered" >headings[0].startLine - lineOffset - 1;</span>
865
+ const preamble = <span class="cstat-no" title="statement not covered" >body.split('\n').slice(0, firstHeadingStart).join('\n').trim();</span>
866
+ &nbsp;
867
+ // Build section nodes with parent hierarchy
868
+ const stack: Array&lt;{ level: number; id: string }&gt; = <span class="cstat-no" title="statement not covered" >[];</span>
869
+ let firstSectionId: string | null = <span class="cstat-no" title="statement not covered" >null;</span>
870
+ &nbsp;
871
+ <span class="cstat-no" title="statement not covered" > for (const h of headings) {</span>
872
+ const <span class="cstat-no" title="statement not covered" >sectionId = makeId('section', fileNode.id, toNormLabel(h.title), String(h.startLine));</span>
873
+ <span class="cstat-no" title="statement not covered" > if (!firstSectionId) <span class="cstat-no" title="statement not covered" >firstSectionId = sectionId;</span></span>
874
+ &nbsp;
875
+ const node: MonographNode = <span class="cstat-no" title="statement not covered" >{</span>
876
+ id: sectionId, label: 'Section',
877
+ name: h.title, normLabel: toNormLabel(h.title),
878
+ filePath: fileNode.filePath, startLine: h.startLine, endLine: h.endLine,
879
+ isExported: false,
880
+ properties: { ...meta, level: h.level, content: h.content.slice(0, 2000) },
881
+ };
882
+ <span class="cstat-no" title="statement not covered" > sectionNodes.push(node);</span>
883
+ // Scoped key: fileId::normTitle — prevents cross-file title collisions
884
+ <span class="cstat-no" title="statement not covered" > sectionByKey.set(`${fileNode.id}::${toNormLabel(h.title)}`, node);</span>
885
+ &nbsp;
886
+ // File → Section (DEFINES)
887
+ <span class="cstat-no" title="statement not covered" > allEdges.push({</span>
888
+ id: makeId(fileNode.id, sectionId, 'defines'),
889
+ sourceId: fileNode.id, targetId: sectionId,
890
+ relation: 'DEFINES', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
891
+ });
892
+ &nbsp;
893
+ // Parent section → this section (PARENT_SECTION)
894
+ <span class="cstat-no" title="statement not covered" > while (stack.length &gt; 0 &amp;&amp; stack[stack.length - 1].level &gt;= h.level) <span class="cstat-no" title="statement not covered" >stack.pop();</span></span>
895
+ <span class="cstat-no" title="statement not covered" > if (stack.length &gt; 0) {</span>
896
+ const parentId = <span class="cstat-no" title="statement not covered" >stack[stack.length - 1].id;</span>
897
+ <span class="cstat-no" title="statement not covered" > allEdges.push({</span>
898
+ id: makeId(parentId, sectionId, 'parent_section'),
899
+ sourceId: parentId, targetId: sectionId,
900
+ relation: 'PARENT_SECTION', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
901
+ });
902
+ }
903
+ <span class="cstat-no" title="statement not covered" > stack.push({ level: h.level, id: sectionId });</span>
904
+ &nbsp;
905
+ <span class="cstat-no" title="statement not covered" > wireTagEdges(sectionId, extractTags(h.content, {}), conceptNodes, allEdges);</span>
906
+ <span class="cstat-no" title="statement not covered" > for (const lnk of extractLinks(h.content)) <span class="cstat-no" title="statement not covered" >deferredRefs.push({ sourceId: sectionId, fileId: fileNode.id, ...lnk });</span></span>
907
+ }
908
+ &nbsp;
909
+ // Preamble links/tags → attach to first section
910
+ <span class="cstat-no" title="statement not covered" > if (preamble &amp;&amp; firstSectionId) {</span>
911
+ <span class="cstat-no" title="statement not covered" > wireTagEdges(firstSectionId, extractTags(preamble, {}), conceptNodes, allEdges);</span>
912
+ <span class="cstat-no" title="statement not covered" > for (const lnk of extractLinks(preamble)) <span class="cstat-no" title="statement not covered" >deferredRefs.push({ sourceId: firstSectionId, fileId: fileNode.id, ...lnk });</span></span>
913
+ }
914
+ &nbsp;
915
+ // Frontmatter tags → first section
916
+ <span class="cstat-no" title="statement not covered" > if (fileTags.length &gt; 0 &amp;&amp; firstSectionId) {</span>
917
+ <span class="cstat-no" title="statement not covered" > wireTagEdges(firstSectionId, fileTags, conceptNodes, allEdges);</span>
918
+ }
919
+ }
920
+ &nbsp;
921
+ // Resolve deferred REFERENCES edges
922
+ // Wiki links resolve within the same file first, then fall back to cross-file
923
+ const seenRefs = <span class="cstat-no" title="statement not covered" >new Set&lt;string&gt;();</span>
924
+ <span class="cstat-no" title="statement not covered" > for (const ref of deferredRefs as Array&lt;{ sourceId: string; fileId: string; target: string; isWiki: boolean }&gt;) {</span>
925
+ let target: MonographNode | undefined;
926
+ &nbsp;
927
+ <span class="cstat-no" title="statement not covered" > if (ref.isWiki) {</span>
928
+ // Same-file resolution first (avoids cross-file title collisions)
929
+ const <span class="cstat-no" title="statement not covered" >normTarget = toNormLabel(ref.target);</span>
930
+ <span class="cstat-no" title="statement not covered" > target = sectionByKey.get(`${ref.fileId}::${normTarget}`);</span>
931
+ <span class="cstat-no" title="statement not covered" > if (!target) {</span>
932
+ // Cross-file: search all files for matching title
933
+ <span class="cstat-no" title="statement not covered" > for (const [key, node] of sectionByKey) {</span>
934
+ <span class="cstat-no" title="statement not covered" > if (key.endsWith(`::${normTarget}`)) { <span class="cstat-no" title="statement not covered" >target = node; <span class="cstat-no" title="statement not covered" >b</span>reak; }</span></span>
935
+ }
936
+ }
937
+ <span class="cstat-no" title="statement not covered" > if (!target) <span class="cstat-no" title="statement not covered" >target = fileByName.get(normTarget);</span></span>
938
+ } else {
939
+ <span class="cstat-no" title="statement not covered" > target = fileByRel.get(ref.target.replace(/^\.\//, ''))</span>
940
+ ?? fileByName.get(basename(ref.target).replace(/\.mdx?$/, '').toLowerCase());
941
+ }
942
+ &nbsp;
943
+ <span class="cstat-no" title="statement not covered" > if (target) {</span>
944
+ const <span class="cstat-no" title="statement not covered" >edgeId = makeId(ref.sourceId, target.id, 'references');</span>
945
+ <span class="cstat-no" title="statement not covered" > if (!seenRefs.has(edgeId)) {</span>
946
+ <span class="cstat-no" title="statement not covered" > seenRefs.add(edgeId);</span>
947
+ <span class="cstat-no" title="statement not covered" > allEdges.push({</span>
948
+ id: edgeId, sourceId: ref.sourceId, targetId: target.id,
949
+ relation: 'REFERENCES', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
950
+ });
951
+ }
952
+ }
953
+ }
954
+ &nbsp;
955
+ // File nodes are never persisted by structure/parse phases — insert them here
956
+ // so DEFINES/REFERENCES edges can satisfy FK constraints.
957
+ <span class="cstat-no" title="statement not covered" > insertNodes(ctx.db, docFiles);</span>
958
+ <span class="cstat-no" title="statement not covered" > if (sectionNodes.length &gt; <span class="cstat-no" title="statement not covered" >0) insertNodes(ctx.db, sectionNodes);</span></span>
959
+ <span class="cstat-no" title="statement not covered" > if (conceptNodes.size &gt; <span class="cstat-no" title="statement not covered" >0) insertNodes(ctx.db, [...conceptNodes.values()]);</span></span>
960
+ <span class="cstat-no" title="statement not covered" > if (allEdges.length &gt; <span class="cstat-no" title="statement not covered" >0) insertEdges(ctx.db, allEdges);</span></span>
961
+ &nbsp;
962
+ <span class="cstat-no" title="statement not covered" > ctx.onProgress?.({ phase: 'docs-parse', message: `Parsed ${docFiles.length} doc files → ${sectionNodes.length} sections` });</span>
963
+ <span class="cstat-no" title="statement not covered" > return { sectionNodes, docFiles: docFiles.length };</span>
964
+ },
965
+ };
966
+ &nbsp;
967
+ function <span class="fstat-no" title="function not covered" >wireTagEdges(</span>
968
+ sourceId: string,
969
+ tags: string[],
970
+ conceptNodes: Map&lt;string, MonographNode&gt;,
971
+ edges: MonographEdge[],
972
+ ): void {
973
+ <span class="cstat-no" title="statement not covered" > for (const tag of tags) {</span>
974
+ const <span class="cstat-no" title="statement not covered" >conceptId = makeId('concept', tag.replace(/[^a-z0-9]/g, '_'));</span>
975
+ <span class="cstat-no" title="statement not covered" > if (!conceptNodes.has(conceptId)) {</span>
976
+ <span class="cstat-no" title="statement not covered" > conceptNodes.set(conceptId, {</span>
977
+ id: conceptId, label: 'Concept', name: tag, normLabel: toNormLabel(tag), isExported: false,
978
+ });
979
+ }
980
+ <span class="cstat-no" title="statement not covered" > edges.push({</span>
981
+ id: makeId(sourceId, conceptId, 'tagged_as'),
982
+ sourceId, targetId: conceptId,
983
+ relation: 'TAGGED_AS', confidence: 'EXTRACTED', confidenceScore: CONFIDENCE_SCORE.EXTRACTED,
984
+ });
985
+ }
986
+ }
987
+ &nbsp;</pre></td></tr></table></pre>
988
+
989
+ <div class='push'></div><!-- for sticky footer -->
990
+ </div><!-- /wrapper -->
991
+ <div class='footer quiet pad2 space-top1 center small'>
992
+ Code coverage generated by
993
+ <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
994
+ at 2026-07-25T08:38:16.548Z
995
+ </div>
996
+ <script src="../../../prettify.js"></script>
997
+ <script>
998
+ window.onload = function () {
999
+ prettyPrint();
1000
+ };
1001
+ </script>
1002
+ <script src="../../../sorter.js"></script>
1003
+ <script src="../../../block-navigation.js"></script>
1004
+ </body>
1005
+ </html>
1006
+