npm - @monoes/monograph - Versions diffs - 1.5.3 → 1.5.4 - Mend

@monoes/monograph 1.5.3 → 1.5.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (500) hide show

package/.monodesign/hook.cache.json +1 -1
package/__tests__/integration/call-attribution.test.ts +116 -0
package/coverage/base.css +224 -0
package/coverage/block-navigation.js +87 -0
package/coverage/coverage-summary.json +399 -0
package/coverage/favicon.png +0 -0
package/coverage/index.html +881 -0
package/coverage/prettify.css +1 -0
package/coverage/prettify.js +2 -0
package/coverage/sort-arrow-sprite.png +0 -0
package/coverage/sorter.js +210 -0
package/coverage/src/analysis/benchmark.ts.html +481 -0
package/coverage/src/analysis/changed-files.ts.html +304 -0
package/coverage/src/analysis/changed-workspaces.ts.html +367 -0
package/coverage/src/analysis/churn-cache.ts.html +622 -0
package/coverage/src/analysis/churn-trend.ts.html +256 -0
package/coverage/src/analysis/churn.ts.html +874 -0
package/coverage/src/analysis/cluster-quality.ts.html +511 -0
package/coverage/src/analysis/combined.ts.html +208 -0
package/coverage/src/analysis/corpus-health.ts.html +208 -0
package/coverage/src/analysis/coverage-gaps.ts.html +823 -0
package/coverage/src/analysis/dep-classification.ts.html +586 -0
package/coverage/src/analysis/dependency-health.ts.html +523 -0
package/coverage/src/analysis/duplicate-exports.ts.html +415 -0
package/coverage/src/analysis/fallow-suppression.ts.html +379 -0
package/coverage/src/analysis/feature-flags-config.ts.html +226 -0
package/coverage/src/analysis/feature-flags.ts.html +754 -0
package/coverage/src/analysis/file-classifier.ts.html +346 -0
package/coverage/src/analysis/git-changed-files.ts.html +271 -0
package/coverage/src/analysis/health-baseline.ts.html +325 -0
package/coverage/src/analysis/index.html +641 -0
package/coverage/src/analysis/issue-filters.ts.html +253 -0
package/coverage/src/analysis/list.ts.html +307 -0
package/coverage/src/analysis/node-similarity.ts.html +430 -0
package/coverage/src/analysis/private-type-leaks.ts.html +442 -0
package/coverage/src/analysis/progress.ts.html +214 -0
package/coverage/src/analysis/project-state.ts.html +370 -0
package/coverage/src/analysis/regression-config.ts.html +193 -0
package/coverage/src/analysis/rule-overrides.ts.html +328 -0
package/coverage/src/analysis/scripts.ts.html +370 -0
package/coverage/src/analysis/shape-extractor.ts.html +691 -0
package/coverage/src/analysis/since-duration.ts.html +211 -0
package/coverage/src/analysis/suppression-context.ts.html +370 -0
package/coverage/src/analysis/suppressions.ts.html +325 -0
package/coverage/src/analysis/surprise-scorer.ts.html +307 -0
package/coverage/src/analysis/targets.ts.html +796 -0
package/coverage/src/analysis/unused-class-members.ts.html +322 -0
package/coverage/src/analysis/workspace-filter.ts.html +352 -0
package/coverage/src/analyze/boundary-analysis.ts.html +472 -0
package/coverage/src/analyze/index.html +161 -0
package/coverage/src/analyze/predicates/file.ts.html +343 -0
package/coverage/src/analyze/predicates/import.ts.html +355 -0
package/coverage/src/analyze/predicates/index.html +146 -0
package/coverage/src/analyze/predicates/lifecycle.ts.html +250 -0
package/coverage/src/analyze/unused-deps.ts.html +295 -0
package/coverage/src/analyze/unused-exports.ts.html +520 -0
package/coverage/src/analyze/unused-files.ts.html +223 -0
package/coverage/src/api/index.html +131 -0
package/coverage/src/api/production-override.ts.html +274 -0
package/coverage/src/api/programmatic.ts.html +439 -0
package/coverage/src/audit.ts.html +787 -0
package/coverage/src/cache/augment-cache.ts.html +274 -0
package/coverage/src/cache/extraction-cache.ts.html +508 -0
package/coverage/src/cache/index.html +131 -0
package/coverage/src/check/filtering.ts.html +319 -0
package/coverage/src/check/index.html +161 -0
package/coverage/src/check/index.ts.html +382 -0
package/coverage/src/check/output.ts.html +322 -0
package/coverage/src/check/rules.ts.html +268 -0
package/coverage/src/ci-template.ts.html +337 -0
package/coverage/src/claude-cli.ts.html +262 -0
package/coverage/src/cli/ai-context.ts.html +664 -0
package/coverage/src/cli/augment.ts.html +427 -0
package/coverage/src/cli/check-update.ts.html +205 -0
package/coverage/src/cli/doctor.ts.html +631 -0
package/coverage/src/cli/eval-server.ts.html +463 -0
package/coverage/src/cli/hooks-install.ts.html +691 -0
package/coverage/src/cli/index.html +221 -0
package/coverage/src/cli/setup.ts.html +676 -0
package/coverage/src/cli/skill-gen.ts.html +1126 -0
package/coverage/src/commands/flags.ts.html +301 -0
package/coverage/src/commands/index.html +116 -0
package/coverage/src/config/boundary-config.ts.html +634 -0
package/coverage/src/config/cli-schema.ts.html +328 -0
package/coverage/src/config/config-parsing.ts.html +391 -0
package/coverage/src/config/duplicates-config.ts.html +271 -0
package/coverage/src/config/external-plugin.ts.html +316 -0
package/coverage/src/config/health-config.ts.html +211 -0
package/coverage/src/config/ignore-exports-used-in-file.ts.html +223 -0
package/coverage/src/config/index.html +341 -0
package/coverage/src/config/migration-types.ts.html +304 -0
package/coverage/src/config/output-format.ts.html +157 -0
package/coverage/src/config/plugins/builtin.ts.html +1318 -0
package/coverage/src/config/plugins/index.html +146 -0
package/coverage/src/config/plugins/registry.ts.html +316 -0
package/coverage/src/config/plugins/types.ts.html +127 -0
package/coverage/src/config/resolution.ts.html +391 -0
package/coverage/src/config/rules.ts.html +295 -0
package/coverage/src/config/schema-gen.ts.html +430 -0
package/coverage/src/config/types.ts.html +532 -0
package/coverage/src/config/used-class-members.ts.html +244 -0
package/coverage/src/config/validate.ts.html +409 -0
package/coverage/src/config/workspace.ts.html +496 -0
package/coverage/src/coverage/cloud-client.ts.html +418 -0
package/coverage/src/coverage/index.html +146 -0
package/coverage/src/coverage/upload-inventory.ts.html +337 -0
package/coverage/src/coverage/upload-source-maps.ts.html +376 -0
package/coverage/src/discover/entry-points.ts.html +238 -0
package/coverage/src/discover/index.html +131 -0
package/coverage/src/discover/infrastructure-entries.ts.html +610 -0
package/coverage/src/duplicates/detect/concatenation.ts.html +196 -0
package/coverage/src/duplicates/detect/extraction.ts.html +406 -0
package/coverage/src/duplicates/detect/filtering.ts.html +421 -0
package/coverage/src/duplicates/detect/index.html +206 -0
package/coverage/src/duplicates/detect/lcp.ts.html +166 -0
package/coverage/src/duplicates/detect/ranking.ts.html +133 -0
package/coverage/src/duplicates/detect/statistics.ts.html +292 -0
package/coverage/src/duplicates/detect/suffix-array.ts.html +349 -0
package/coverage/src/duplicates/families.ts.html +370 -0
package/coverage/src/duplicates/index.html +161 -0
package/coverage/src/duplicates/normalize.ts.html +259 -0
package/coverage/src/duplicates/shingle-filter.ts.html +196 -0
package/coverage/src/duplicates/token-types.ts.html +271 -0
package/coverage/src/duplicates/tokenize/index.html +116 -0
package/coverage/src/duplicates/tokenize/index.ts.html +397 -0
package/coverage/src/error/fallow-error.ts.html +367 -0
package/coverage/src/error/index.html +116 -0
package/coverage/src/error.ts.html +226 -0
package/coverage/src/export/adjacency-matrix.ts.html +466 -0
package/coverage/src/export/analysis-json.ts.html +346 -0
package/coverage/src/export/badge.ts.html +400 -0
package/coverage/src/export/canvas.ts.html +211 -0
package/coverage/src/export/codeclimate.ts.html +688 -0
package/coverage/src/export/compact-health.ts.html +442 -0
package/coverage/src/export/compact.ts.html +334 -0
package/coverage/src/export/csv.ts.html +184 -0
package/coverage/src/export/cypher.ts.html +184 -0
package/coverage/src/export/dot.ts.html +241 -0
package/coverage/src/export/gexf.ts.html +262 -0
package/coverage/src/export/graphml.ts.html +235 -0
package/coverage/src/export/html.ts.html +1729 -0
package/coverage/src/export/index.html +401 -0
package/coverage/src/export/index.ts.html +112 -0
package/coverage/src/export/json.ts.html +193 -0
package/coverage/src/export/markdown.ts.html +955 -0
package/coverage/src/export/mermaid.ts.html +385 -0
package/coverage/src/export/obsidian.ts.html +217 -0
package/coverage/src/export/sarif.ts.html +820 -0
package/coverage/src/export/svg.ts.html +289 -0
package/coverage/src/fix/deps.ts.html +295 -0
package/coverage/src/fix/enum-members.ts.html +394 -0
package/coverage/src/fix/export-surgery.ts.html +676 -0
package/coverage/src/fix/exports.ts.html +364 -0
package/coverage/src/fix/index.html +176 -0
package/coverage/src/fix/orchestrator.ts.html +286 -0
package/coverage/src/graph/analyzer.ts.html +292 -0
package/coverage/src/graph/author-analytics.ts.html +736 -0
package/coverage/src/graph/baseline.ts.html +1381 -0
package/coverage/src/graph/clone-families.ts.html +481 -0
package/coverage/src/graph/codeowners-extended.ts.html +427 -0
package/coverage/src/graph/codeowners-gitlab.ts.html +535 -0
package/coverage/src/graph/codeowners.ts.html +736 -0
package/coverage/src/graph/complexity.ts.html +685 -0
package/coverage/src/graph/cross-reference-findings.ts.html +340 -0
package/coverage/src/graph/cross-reference.ts.html +502 -0
package/coverage/src/graph/cycle-detection.ts.html +1018 -0
package/coverage/src/graph/cycles.ts.html +751 -0
package/coverage/src/graph/dead-code.ts.html +469 -0
package/coverage/src/graph/dependency-closure.ts.html +463 -0
package/coverage/src/graph/dfs.ts.html +439 -0
package/coverage/src/graph/diff.ts.html +361 -0
package/coverage/src/graph/duplication-stats.ts.html +322 -0
package/coverage/src/graph/edge-filter.ts.html +436 -0
package/coverage/src/graph/explain.ts.html +484 -0
package/coverage/src/graph/external-style-usage.ts.html +328 -0
package/coverage/src/graph/health-score.ts.html +622 -0
package/coverage/src/graph/hotspots.ts.html +742 -0
package/coverage/src/graph/import-chain.ts.html +529 -0
package/coverage/src/graph/index.html +746 -0
package/coverage/src/graph/loader.ts.html +217 -0
package/coverage/src/graph/maintainability.ts.html +553 -0
package/coverage/src/graph/merge.ts.html +607 -0
package/coverage/src/graph/mirrored-dirs.ts.html +691 -0
package/coverage/src/graph/narrowing.ts.html +361 -0
package/coverage/src/graph/node-search.ts.html +688 -0
package/coverage/src/graph/node-types.ts.html +286 -0
package/coverage/src/graph/normalize-id.ts.html +499 -0
package/coverage/src/graph/pagerank.ts.html +580 -0
package/coverage/src/graph/prune.ts.html +370 -0
package/coverage/src/graph/re-exports/index.html +116 -0
package/coverage/src/graph/re-exports/propagate.ts.html +370 -0
package/coverage/src/graph/reachability.ts.html +382 -0
package/coverage/src/graph/regex-search.ts.html +781 -0
package/coverage/src/graph/regression.ts.html +682 -0
package/coverage/src/graph/resolve/discover-types.ts.html +220 -0
package/coverage/src/graph/resolve/dynamic-imports.ts.html +391 -0
package/coverage/src/graph/resolve/fallbacks.ts.html +322 -0
package/coverage/src/graph/resolve/index.html +281 -0
package/coverage/src/graph/resolve/index.ts.html +289 -0
package/coverage/src/graph/resolve/path-info.ts.html +208 -0
package/coverage/src/graph/resolve/re-exports.ts.html +127 -0
package/coverage/src/graph/resolve/react-native.ts.html +166 -0
package/coverage/src/graph/resolve/require-imports.ts.html +139 -0
package/coverage/src/graph/resolve/specifier.ts.html +445 -0
package/coverage/src/graph/resolve/static-imports.ts.html +127 -0
package/coverage/src/graph/resolve/types.ts.html +409 -0
package/coverage/src/graph/resolve/upgrades.ts.html +181 -0
package/coverage/src/graph/ripple-impact.ts.html +478 -0
package/coverage/src/graph/risk-profile.ts.html +622 -0
package/coverage/src/graph/statistics.ts.html +580 -0
package/coverage/src/graph/stats.ts.html +556 -0
package/coverage/src/graph/subgraph.ts.html +571 -0
package/coverage/src/graph/topo-sort.ts.html +598 -0
package/coverage/src/graph/wcc.ts.html +646 -0
package/coverage/src/groups/contract-bridge.ts.html +394 -0
package/coverage/src/groups/contract-registry.ts.html +874 -0
package/coverage/src/groups/group-config.ts.html +409 -0
package/coverage/src/groups/group-search.ts.html +502 -0
package/coverage/src/groups/group-sync.ts.html +331 -0
package/coverage/src/groups/grpc-extractor.ts.html +277 -0
package/coverage/src/groups/index.html +221 -0
package/coverage/src/groups/service-boundary.ts.html +442 -0
package/coverage/src/groups/topic-extractor.ts.html +355 -0
package/coverage/src/health/analysis-counts-snapshot.ts.html +256 -0
package/coverage/src/health/analysis-counts.ts.html +295 -0
package/coverage/src/health/complexity-findings.ts.html +430 -0
package/coverage/src/health/distribution-thresholds.ts.html +247 -0
package/coverage/src/health/grouping.ts.html +499 -0
package/coverage/src/health/health-grouping.ts.html +343 -0
package/coverage/src/health/health-report-types.ts.html +580 -0
package/coverage/src/health/health-report.ts.html +328 -0
package/coverage/src/health/health-score.ts.html +280 -0
package/coverage/src/health/hotspot-utils.ts.html +250 -0
package/coverage/src/health/hotspots.ts.html +397 -0
package/coverage/src/health/index.html +551 -0
package/coverage/src/health/large-functions.ts.html +187 -0
package/coverage/src/health/ownership-metrics.ts.html +268 -0
package/coverage/src/health/ownership-risk.ts.html +379 -0
package/coverage/src/health/ownership.ts.html +607 -0
package/coverage/src/health/quality-gate.ts.html +256 -0
package/coverage/src/health/risk-profile.ts.html +202 -0
package/coverage/src/health/runtime-coverage-report.ts.html +388 -0
package/coverage/src/health/runtime-coverage.ts.html +298 -0
package/coverage/src/health/scores.ts.html +301 -0
package/coverage/src/health/scoring-types.ts.html +229 -0
package/coverage/src/health/target-thresholds.ts.html +361 -0
package/coverage/src/health/target-types.ts.html +247 -0
package/coverage/src/health/targets.ts.html +538 -0
package/coverage/src/health/timings.ts.html +343 -0
package/coverage/src/health/trend-types.ts.html +256 -0
package/coverage/src/health/trends.ts.html +343 -0
package/coverage/src/health/vital-signs-compute.ts.html +409 -0
package/coverage/src/health/vital-signs-snapshot.ts.html +301 -0
package/coverage/src/health/vital-signs.ts.html +388 -0
package/coverage/src/index.html +191 -0
package/coverage/src/index.ts.html +418 -0
package/coverage/src/ingest/git-clone.ts.html +823 -0
package/coverage/src/ingest/index.html +161 -0
package/coverage/src/ingest/query-memory.ts.html +481 -0
package/coverage/src/ingest/transcribe.ts.html +847 -0
package/coverage/src/ingest/url-ingest.ts.html +346 -0
package/coverage/src/init/agent-hooks.ts.html +343 -0
package/coverage/src/init/git-hooks.ts.html +298 -0
package/coverage/src/init/index.html +146 -0
package/coverage/src/init/project-detection.ts.html +400 -0
package/coverage/src/license/index.html +116 -0
package/coverage/src/license/manager.ts.html +445 -0
package/coverage/src/lsp/code-actions.ts.html +466 -0
package/coverage/src/lsp/code-lens.ts.html +253 -0
package/coverage/src/lsp/diagnostics-ext.ts.html +535 -0
package/coverage/src/lsp/diagnostics-push.ts.html +394 -0
package/coverage/src/lsp/diagnostics.ts.html +379 -0
package/coverage/src/lsp/hover.ts.html +277 -0
package/coverage/src/lsp/index.html +206 -0
package/coverage/src/lsp/server.ts.html +847 -0
package/coverage/src/mcp/index.html +146 -0
package/coverage/src/mcp/params.ts.html +688 -0
package/coverage/src/mcp/resources.ts.html +457 -0
package/coverage/src/mcp/tool-builders.ts.html +694 -0
package/coverage/src/mcp-resources/communities-resource.ts.html +301 -0
package/coverage/src/mcp-resources/graph-resource.ts.html +127 -0
package/coverage/src/mcp-resources/index.html +251 -0
package/coverage/src/mcp-resources/index.ts.html +112 -0
package/coverage/src/mcp-resources/named-cluster-resource.ts.html +190 -0
package/coverage/src/mcp-resources/named-process-resource.ts.html +163 -0
package/coverage/src/mcp-resources/processes-resource.ts.html +286 -0
package/coverage/src/mcp-resources/repo-context-resource.ts.html +193 -0
package/coverage/src/mcp-resources/repos-resource.ts.html +148 -0
package/coverage/src/mcp-resources/schema-resource.ts.html +223 -0
package/coverage/src/mcp-resources/wiki-resource.ts.html +154 -0
package/coverage/src/mcp-tools/api-impact.ts.html +628 -0
package/coverage/src/mcp-tools/context.ts.html +418 -0
package/coverage/src/mcp-tools/cypher.ts.html +172 -0
package/coverage/src/mcp-tools/detect-changes.ts.html +433 -0
package/coverage/src/mcp-tools/explain.ts.html +280 -0
package/coverage/src/mcp-tools/graph-query.ts.html +469 -0
package/coverage/src/mcp-tools/group-list.ts.html +349 -0
package/coverage/src/mcp-tools/group-query.ts.html +163 -0
package/coverage/src/mcp-tools/group-sync.ts.html +181 -0
package/coverage/src/mcp-tools/impact.ts.html +691 -0
package/coverage/src/mcp-tools/index.html +431 -0
package/coverage/src/mcp-tools/index.ts.html +148 -0
package/coverage/src/mcp-tools/list-repos.ts.html +199 -0
package/coverage/src/mcp-tools/neighbors.ts.html +325 -0
package/coverage/src/mcp-tools/query.ts.html +343 -0
package/coverage/src/mcp-tools/rename.ts.html +439 -0
package/coverage/src/mcp-tools/route-map.ts.html +379 -0
package/coverage/src/mcp-tools/serve.ts.html +208 -0
package/coverage/src/mcp-tools/shape-check.ts.html +631 -0
package/coverage/src/mcp-tools/staleness.ts.html +124 -0
package/coverage/src/mcp-tools/tool-map.ts.html +283 -0
package/coverage/src/mcp-tools/wiki-build.ts.html +196 -0
package/coverage/src/mcp-tools/wiki.ts.html +169 -0
package/coverage/src/migrate/index.html +161 -0
package/coverage/src/migrate/jscpd.ts.html +319 -0
package/coverage/src/migrate/jsonc-gen.ts.html +199 -0
package/coverage/src/migrate/knip.ts.html +463 -0
package/coverage/src/migrate/toml-gen.ts.html +229 -0
package/coverage/src/parsers/c.ts.html +178 -0
package/coverage/src/parsers/cpp.ts.html +172 -0
package/coverage/src/parsers/csharp.ts.html +214 -0
package/coverage/src/parsers/dart.ts.html +202 -0
package/coverage/src/parsers/extractor.ts.html +691 -0
package/coverage/src/parsers/go.ts.html +166 -0
package/coverage/src/parsers/index.html +386 -0
package/coverage/src/parsers/java.ts.html +166 -0
package/coverage/src/parsers/kotlin.ts.html +193 -0
package/coverage/src/parsers/language-config.ts.html +169 -0
package/coverage/src/parsers/language-parsers.ts.html +445 -0
package/coverage/src/parsers/loader.ts.html +532 -0
package/coverage/src/parsers/named-bindings.ts.html +274 -0
package/coverage/src/parsers/php.ts.html +196 -0
package/coverage/src/parsers/python.ts.html +163 -0
package/coverage/src/parsers/ruby.ts.html +202 -0
package/coverage/src/parsers/rust.ts.html +160 -0
package/coverage/src/parsers/swift.ts.html +169 -0
package/coverage/src/parsers/typescript.ts.html +208 -0
package/coverage/src/parsers/vue.ts.html +322 -0
package/coverage/src/pipeline/cluster-only.ts.html +277 -0
package/coverage/src/pipeline/effort.ts.html +235 -0
package/coverage/src/pipeline/index.html +191 -0
package/coverage/src/pipeline/orchestrator.ts.html +844 -0
package/coverage/src/pipeline/phases/boundary.ts.html +538 -0
package/coverage/src/pipeline/phases/bridge-adapters/electron-ipc.ts.html +358 -0
package/coverage/src/pipeline/phases/bridge-adapters/index.html +176 -0
package/coverage/src/pipeline/phases/bridge-adapters/registry.ts.html +127 -0
package/coverage/src/pipeline/phases/bridge-adapters/tauri.ts.html +394 -0
package/coverage/src/pipeline/phases/bridge-adapters/types.ts.html +178 -0
package/coverage/src/pipeline/phases/bridge-adapters/wails.ts.html +184 -0
package/coverage/src/pipeline/phases/bridge-resolver.ts.html +316 -0
package/coverage/src/pipeline/phases/call-site-extractors.ts.html +592 -0
package/coverage/src/pipeline/phases/communities.ts.html +634 -0
package/coverage/src/pipeline/phases/contextual-proximity.ts.html +349 -0
package/coverage/src/pipeline/phases/cross-file.ts.html +433 -0
package/coverage/src/pipeline/phases/docs-parse.ts.html +1006 -0
package/coverage/src/pipeline/phases/evidence.ts.html +112 -0
package/coverage/src/pipeline/phases/field-access.ts.html +232 -0
package/coverage/src/pipeline/phases/framework-detect.ts.html +412 -0
package/coverage/src/pipeline/phases/god-nodes.ts.html +574 -0
package/coverage/src/pipeline/phases/import-resolver.ts.html +427 -0
package/coverage/src/pipeline/phases/index.html +626 -0
package/coverage/src/pipeline/phases/leiden.ts.html +316 -0
package/coverage/src/pipeline/phases/llm-extract.ts.html +577 -0
package/coverage/src/pipeline/phases/markdown.ts.html +448 -0
package/coverage/src/pipeline/phases/middleware-extractor.ts.html +466 -0
package/coverage/src/pipeline/phases/module-resolution.ts.html +967 -0
package/coverage/src/pipeline/phases/mro.ts.html +253 -0
package/coverage/src/pipeline/phases/orm.ts.html +1594 -0
package/coverage/src/pipeline/phases/parse.ts.html +751 -0
package/coverage/src/pipeline/phases/pdf-parse.ts.html +484 -0
package/coverage/src/pipeline/phases/processes.ts.html +832 -0
package/coverage/src/pipeline/phases/re-export-propagation.ts.html +565 -0
package/coverage/src/pipeline/phases/reachability.ts.html +553 -0
package/coverage/src/pipeline/phases/routes.ts.html +1135 -0
package/coverage/src/pipeline/phases/scan.ts.html +484 -0
package/coverage/src/pipeline/phases/scope-resolution.ts.html +1147 -0
package/coverage/src/pipeline/phases/structure.ts.html +289 -0
package/coverage/src/pipeline/phases/suggest.ts.html +361 -0
package/coverage/src/pipeline/phases/surprises.ts.html +334 -0
package/coverage/src/pipeline/phases/tools.ts.html +625 -0
package/coverage/src/pipeline/phases/variables-phase.ts.html +196 -0
package/coverage/src/pipeline/phases/variables.ts.html +286 -0
package/coverage/src/pipeline/phases/wildcard-phase.ts.html +235 -0
package/coverage/src/pipeline/phases/wildcard-synthesis.ts.html +727 -0
package/coverage/src/pipeline/progress.ts.html +259 -0
package/coverage/src/pipeline/runner.ts.html +469 -0
package/coverage/src/pipeline/types.ts.html +208 -0
package/coverage/src/query/cypher-parser.ts.html +1435 -0
package/coverage/src/query/index.html +116 -0
package/coverage/src/registry/index.html +116 -0
package/coverage/src/registry/repo-registry.ts.html +460 -0
package/coverage/src/regression/baseline-deltas.ts.html +730 -0
package/coverage/src/regression/baseline.ts.html +313 -0
package/coverage/src/regression/counts.ts.html +346 -0
package/coverage/src/regression/index.html +176 -0
package/coverage/src/regression/outcome.ts.html +319 -0
package/coverage/src/regression/tolerance.ts.html +190 -0
package/coverage/src/report/attributed-duplication.ts.html +421 -0
package/coverage/src/report/badge-svg.ts.html +385 -0
package/coverage/src/report/cross-ref-human.ts.html +235 -0
package/coverage/src/report/duplication-grouping.ts.html +307 -0
package/coverage/src/report/grouping.ts.html +496 -0
package/coverage/src/report/human-check.ts.html +958 -0
package/coverage/src/report/human-dupes.ts.html +511 -0
package/coverage/src/report/human-health.ts.html +670 -0
package/coverage/src/report/human.ts.html +445 -0
package/coverage/src/report/index.html +341 -0
package/coverage/src/report/json-actions.ts.html +358 -0
package/coverage/src/report/json-builders.ts.html +295 -0
package/coverage/src/report/json-schema.ts.html +310 -0
package/coverage/src/report/number-format.ts.html +358 -0
package/coverage/src/report/output-grouped.ts.html +391 -0
package/coverage/src/report/pipeline-perf.ts.html +253 -0
package/coverage/src/report/trace-human.ts.html +466 -0
package/coverage/src/reporting/graph-report.ts.html +1378 -0
package/coverage/src/reporting/index.html +116 -0
package/coverage/src/results/fallow-results.ts.html +541 -0
package/coverage/src/results/index.html +131 -0
package/coverage/src/results/types.ts.html +532 -0
package/coverage/src/scope-resolution/evidence-weights.ts.html +208 -0
package/coverage/src/scope-resolution/index.html +116 -0
package/coverage/src/search/ast-chunker.ts.html +703 -0
package/coverage/src/search/diacritic.ts.html +106 -0
package/coverage/src/search/hybrid-query.ts.html +280 -0
package/coverage/src/search/index.html +161 -0
package/coverage/src/search/rrf.ts.html +238 -0
package/coverage/src/security/index.html +131 -0
package/coverage/src/security/safe-fetch.ts.html +424 -0
package/coverage/src/security/sensitive-files.ts.html +157 -0
package/coverage/src/skills/index.html +116 -0
package/coverage/src/skills/platform-skills.ts.html +784 -0
package/coverage/src/staleness/git-staleness.ts.html +283 -0
package/coverage/src/staleness/index.html +116 -0
package/coverage/src/storage/db.ts.html +415 -0
package/coverage/src/storage/edge-store.ts.html +400 -0
package/coverage/src/storage/file-cache.ts.html +319 -0
package/coverage/src/storage/fts-store.ts.html +1240 -0
package/coverage/src/storage/index.html +221 -0
package/coverage/src/storage/node-store.ts.html +712 -0
package/coverage/src/storage/schema.ts.html +598 -0
package/coverage/src/storage/suppressions.ts.html +520 -0
package/coverage/src/storage/unlinked-refs.ts.html +436 -0
package/coverage/src/types.ts.html +676 -0
package/coverage/src/validation/extraction-validator.ts.html +247 -0
package/coverage/src/validation/index.html +116 -0
package/coverage/src/watch/index.html +116 -0
package/coverage/src/watch/watcher.ts.html +499 -0
package/coverage/src/web/analyze-api.ts.html +523 -0
package/coverage/src/web/api.ts.html +1837 -0
package/coverage/src/web/async-jobs.ts.html +412 -0
package/coverage/src/web/index.html +191 -0
package/coverage/src/web/mcp-http.ts.html +766 -0
package/coverage/src/web/react-ui.ts.html +319 -0
package/coverage/src/web/server.ts.html +355 -0
package/coverage/src/wiki/gist-publisher.ts.html +313 -0
package/coverage/src/wiki/index.html +176 -0
package/coverage/src/wiki/prompt-builder.ts.html +190 -0
package/coverage/src/wiki/providers.ts.html +487 -0
package/coverage/src/wiki/wiki-generator.ts.html +736 -0
package/coverage/src/wiki/wiki-store.ts.html +232 -0
package/dist/src/cli/eval-server.d.ts.map +1 -1
package/dist/src/cli/eval-server.js +8 -1
package/dist/src/cli/eval-server.js.map +1 -1
package/dist/src/cli/skill-gen.js.map +1 -1
package/dist/src/graph/regex-search.d.ts.map +1 -1
package/dist/src/graph/regex-search.js +13 -13
package/dist/src/graph/regex-search.js.map +1 -1
package/dist/src/graph/statistics.d.ts +0 -4
package/dist/src/graph/statistics.d.ts.map +1 -1
package/dist/src/graph/statistics.js +0 -7
package/dist/src/graph/statistics.js.map +1 -1
package/dist/src/pipeline/phases/call-site-extractors.d.ts +8 -0
package/dist/src/pipeline/phases/call-site-extractors.d.ts.map +1 -1
package/dist/src/pipeline/phases/call-site-extractors.js +9 -9
package/dist/src/pipeline/phases/call-site-extractors.js.map +1 -1
package/dist/src/pipeline/phases/module-resolution.js +2 -2
package/dist/src/pipeline/phases/module-resolution.js.map +1 -1
package/dist/src/pipeline/phases/scope-resolution.d.ts.map +1 -1
package/dist/src/pipeline/phases/scope-resolution.js +76 -1
package/dist/src/pipeline/phases/scope-resolution.js.map +1 -1
package/dist/src/registry/repo-registry.d.ts.map +1 -1
package/dist/src/registry/repo-registry.js +1 -2
package/dist/src/registry/repo-registry.js.map +1 -1
package/dist/tsconfig.tsbuildinfo +1 -1
package/package.json +4 -3
package/src/cli/eval-server.ts +8 -1
package/src/cli/skill-gen.ts +16 -16
package/src/graph/regex-search.ts +13 -14
package/src/graph/statistics.ts +0 -8
package/src/pipeline/phases/call-site-extractors.ts +17 -9
package/src/pipeline/phases/module-resolution.ts +2 -2
package/src/pipeline/phases/scope-resolution.ts +89 -1
package/src/registry/repo-registry.ts +1 -2
package/vitest.config.ts +7 -0
package/src/analysis/cycles.ts +0 -268
package/src/analysis/trace.ts +0 -300
package/src/analysis/worker-pool.ts +0 -81
package/src/graph/clone-detector.ts +0 -163
package/src/graph/shingle-filter.ts +0 -149
package/src/watch/watch-runner.ts +0 -64

package/coverage/src/pipeline/phases/contextual-proximity.ts.html ADDED Viewed

@@ -0,0 +1,349 @@
+<!doctype html>
+<html lang="en">
+<head>
+    <title>Code coverage report for src/pipeline/phases/contextual-proximity.ts</title>
+    <meta charset="utf-8" />
+    <link rel="stylesheet" href="../../../prettify.css" />
+    <link rel="stylesheet" href="../../../base.css" />
+    <link rel="shortcut icon" type="image/x-icon" href="../../../favicon.png" />
+    <meta name="viewport" content="width=device-width, initial-scale=1" />
+    <style type='text/css'>
+        .coverage-summary .sorter {
+            background-image: url(../../../sort-arrow-sprite.png);
+        }
+    </style>
+</head>
+<body>
+<div class='wrapper'>
+    <div class='pad1'>
+        <h1><a href="../../../index.html">All files</a> / <a href="index.html">src/pipeline/phases</a> contextual-proximity.ts</h1>
+        <div class='clearfix'>
+            <div class='fl pad1y space-right2'>
+                <span class="strong">0% </span>
+                <span class="quiet">Statements</span>
+                <span class='fraction'>0/45</span>
+            </div>
+            <div class='fl pad1y space-right2'>
+                <span class="strong">0% </span>
+                <span class="quiet">Branches</span>
+                <span class='fraction'>0/20</span>
+            </div>
+            <div class='fl pad1y space-right2'>
+                <span class="strong">0% </span>
+                <span class="quiet">Functions</span>
+                <span class='fraction'>0/2</span>
+            </div>
+            <div class='fl pad1y space-right2'>
+                <span class="strong">0% </span>
+                <span class="quiet">Lines</span>
+                <span class='fraction'>0/36</span>
+            </div>
+        </div>
+        <p class="quiet">
+            Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+        </p>
+        <template id="filterTemplate">
+            <div class="quiet">
+                Filter:
+                <input type="search" id="fileSearch">
+            </div>
+        </template>
+    </div>
+    <div class='status-line low'></div>
+    <pre><table class="coverage">
+<tr><td class="line-count quiet"><a name='L1'></a><a href='#L1'>1</a>
+<a name='L2'></a><a href='#L2'>2</a>
+<a name='L3'></a><a href='#L3'>3</a>
+<a name='L4'></a><a href='#L4'>4</a>
+<a name='L5'></a><a href='#L5'>5</a>
+<a name='L6'></a><a href='#L6'>6</a>
+<a name='L7'></a><a href='#L7'>7</a>
+<a name='L8'></a><a href='#L8'>8</a>
+<a name='L9'></a><a href='#L9'>9</a>
+<a name='L10'></a><a href='#L10'>10</a>
+<a name='L11'></a><a href='#L11'>11</a>
+<a name='L12'></a><a href='#L12'>12</a>
+<a name='L13'></a><a href='#L13'>13</a>
+<a name='L14'></a><a href='#L14'>14</a>
+<a name='L15'></a><a href='#L15'>15</a>
+<a name='L16'></a><a href='#L16'>16</a>
+<a name='L17'></a><a href='#L17'>17</a>
+<a name='L18'></a><a href='#L18'>18</a>
+<a name='L19'></a><a href='#L19'>19</a>
+<a name='L20'></a><a href='#L20'>20</a>
+<a name='L21'></a><a href='#L21'>21</a>
+<a name='L22'></a><a href='#L22'>22</a>
+<a name='L23'></a><a href='#L23'>23</a>
+<a name='L24'></a><a href='#L24'>24</a>
+<a name='L25'></a><a href='#L25'>25</a>
+<a name='L26'></a><a href='#L26'>26</a>
+<a name='L27'></a><a href='#L27'>27</a>
+<a name='L28'></a><a href='#L28'>28</a>
+<a name='L29'></a><a href='#L29'>29</a>
+<a name='L30'></a><a href='#L30'>30</a>
+<a name='L31'></a><a href='#L31'>31</a>
+<a name='L32'></a><a href='#L32'>32</a>
+<a name='L33'></a><a href='#L33'>33</a>
+<a name='L34'></a><a href='#L34'>34</a>
+<a name='L35'></a><a href='#L35'>35</a>
+<a name='L36'></a><a href='#L36'>36</a>
+<a name='L37'></a><a href='#L37'>37</a>
+<a name='L38'></a><a href='#L38'>38</a>
+<a name='L39'></a><a href='#L39'>39</a>
+<a name='L40'></a><a href='#L40'>40</a>
+<a name='L41'></a><a href='#L41'>41</a>
+<a name='L42'></a><a href='#L42'>42</a>
+<a name='L43'></a><a href='#L43'>43</a>
+<a name='L44'></a><a href='#L44'>44</a>
+<a name='L45'></a><a href='#L45'>45</a>
+<a name='L46'></a><a href='#L46'>46</a>
+<a name='L47'></a><a href='#L47'>47</a>
+<a name='L48'></a><a href='#L48'>48</a>
+<a name='L49'></a><a href='#L49'>49</a>
+<a name='L50'></a><a href='#L50'>50</a>
+<a name='L51'></a><a href='#L51'>51</a>
+<a name='L52'></a><a href='#L52'>52</a>
+<a name='L53'></a><a href='#L53'>53</a>
+<a name='L54'></a><a href='#L54'>54</a>
+<a name='L55'></a><a href='#L55'>55</a>
+<a name='L56'></a><a href='#L56'>56</a>
+<a name='L57'></a><a href='#L57'>57</a>
+<a name='L58'></a><a href='#L58'>58</a>
+<a name='L59'></a><a href='#L59'>59</a>
+<a name='L60'></a><a href='#L60'>60</a>
+<a name='L61'></a><a href='#L61'>61</a>
+<a name='L62'></a><a href='#L62'>62</a>
+<a name='L63'></a><a href='#L63'>63</a>
+<a name='L64'></a><a href='#L64'>64</a>
+<a name='L65'></a><a href='#L65'>65</a>
+<a name='L66'></a><a href='#L66'>66</a>
+<a name='L67'></a><a href='#L67'>67</a>
+<a name='L68'></a><a href='#L68'>68</a>
+<a name='L69'></a><a href='#L69'>69</a>
+<a name='L70'></a><a href='#L70'>70</a>
+<a name='L71'></a><a href='#L71'>71</a>
+<a name='L72'></a><a href='#L72'>72</a>
+<a name='L73'></a><a href='#L73'>73</a>
+<a name='L74'></a><a href='#L74'>74</a>
+<a name='L75'></a><a href='#L75'>75</a>
+<a name='L76'></a><a href='#L76'>76</a>
+<a name='L77'></a><a href='#L77'>77</a>
+<a name='L78'></a><a href='#L78'>78</a>
+<a name='L79'></a><a href='#L79'>79</a>
+<a name='L80'></a><a href='#L80'>80</a>
+<a name='L81'></a><a href='#L81'>81</a>
+<a name='L82'></a><a href='#L82'>82</a>
+<a name='L83'></a><a href='#L83'>83</a>
+<a name='L84'></a><a href='#L84'>84</a>
+<a name='L85'></a><a href='#L85'>85</a>
+<a name='L86'></a><a href='#L86'>86</a>
+<a name='L87'></a><a href='#L87'>87</a>
+<a name='L88'></a><a href='#L88'>88</a>
+<a name='L89'></a><a href='#L89'>89</a></td><td class="line-coverage quiet"><span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import type { PipelinePhase, PipelineContext } from '../types.js';
+import type { MonographEdge } from '../../types.js';
+import { makeId, CONFIDENCE_SCORE } from '../../types.js';
+import { insertEdges } from '../../storage/edge-store.js';
+&nbsp;
+export interface ContextualProximityOutput {
+  coOccursEdges: number;
+  conceptsScored: number;
+}
+&nbsp;
+export const contextualProximityPhase: PipelinePhase&lt;ContextualProximityOutput&gt; = <span class="cstat-no" title="statement not covered" >{</span>
+  name: 'contextual-proximity',
+  deps: ['docs-parse', 'pdf-parse'],
+&nbsp;
+  async <span class="fstat-no" title="function not covered" >execute(c</span>tx: PipelineContext) {
+<span class="cstat-no" title="statement not covered" >    if (ctx.options.codeOnly) <span class="cstat-no" title="statement not covered" >return { coOccursEdges: 0, conceptsScored: 0 };</span></span>
+&nbsp;
+    // Fetch all Section → Concept links from TAGGED_AS edges
+    const rows = <span class="cstat-no" title="statement not covered" >ctx.db</span>
+      .prepare(`SELECT source_id, target_id FROM edges WHERE relation = 'TAGGED_AS'`)
+      .all() as { source_id: string; target_id: string }[];
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (rows.length === 0) <span class="cstat-no" title="statement not covered" >return { coOccursEdges: 0, conceptsScored: 0 };</span></span>
+&nbsp;
+    // Group concepts by section using ??= to avoid has+get pattern
+    const sectionConcepts = <span class="cstat-no" title="statement not covered" >new Map&lt;string, string[]&gt;();</span>
+<span class="cstat-no" title="statement not covered" >    for (const { source_id, target_id } of rows) {</span>
+      let list = <span class="cstat-no" title="statement not covered" >sectionConcepts.get(source_id);</span>
+<span class="cstat-no" title="statement not covered" >      if (!list) { <span class="cstat-no" title="statement not covered" >list = []; <span class="cstat-no" title="statement not covered" >s</span>ectionConcepts.set(source_id, list); }</span></span>
+<span class="cstat-no" title="statement not covered" >      list.push(target_id);</span>
+    }
+&nbsp;
+    // Count concept co-occurrences across all sections.
+    // Accumulate conceptDegree in the same pass to avoid a second loop over sectionConcepts.
+    // Use a ternary comparison instead of [a,b].sort() to avoid per-pair array allocation.
+    const coOccur = <span class="cstat-no" title="statement not covered" >new Map&lt;string, number&gt;();</span>
+    const conceptDegree = <span class="cstat-no" title="statement not covered" >new Map&lt;string, number&gt;();</span>
+<span class="cstat-no" title="statement not covered" >    for (const concepts of sectionConcepts.values()) {</span>
+<span class="cstat-no" title="statement not covered" >      for (let i = <span class="cstat-no" title="statement not covered" >0; i</span> &lt; concepts.length; i++) {</span>
+<span class="cstat-no" title="statement not covered" >        conceptDegree.set(concepts[i], (conceptDegree.get(concepts[i]) ?? 0) + 1);</span>
+<span class="cstat-no" title="statement not covered" >        for (let j = <span class="cstat-no" title="statement not covered" >i + 1; j</span> &lt; concepts.length; j++) {</span>
+          // Avoid allocating a 2-element sort array — ternary comparison is equivalent
+          const a = <span class="cstat-no" title="statement not covered" >concepts[i] &lt;= concepts[j] ? concepts[i] : concepts[j];</span>
+          const b = <span class="cstat-no" title="statement not covered" >concepts[i] &lt;= concepts[j] ? concepts[j] : concepts[i];</span>
+          const key = <span class="cstat-no" title="statement not covered" >`${a}::${b}`;</span>
+<span class="cstat-no" title="statement not covered" >          coOccur.set(key, (coOccur.get(key) ?? 0) + 1);</span>
+        }
+      }
+    }
+&nbsp;
+    // Build CO_OCCURS edges (weight = number of sections where both concepts appear)
+    const edges: MonographEdge[] = <span class="cstat-no" title="statement not covered" >[];</span>
+<span class="cstat-no" title="statement not covered" >    for (const [key, weight] of coOccur) {</span>
+      const sep = <span class="cstat-no" title="statement not covered" >key.indexOf('::');</span>
+      const sourceId = <span class="cstat-no" title="statement not covered" >key.slice(0, sep);</span>
+      const targetId = <span class="cstat-no" title="statement not covered" >key.slice(sep + 2);</span>
+<span class="cstat-no" title="statement not covered" >      edges.push({</span>
+        id: makeId(sourceId, targetId, 'co_occurs'),
+        sourceId,
+        targetId,
+        relation: 'CO_OCCURS',
+        confidence: 'INFERRED',
+        confidenceScore: CONFIDENCE_SCORE.INFERRED,
+        weight,
+      });
+    }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (conceptDegree.size &gt; 0) {</span>
+      // Compute maxDeg with a loop to avoid spread array allocation from [...values()]
+      let maxDeg = <span class="cstat-no" title="statement not covered" >0;</span>
+<span class="cstat-no" title="statement not covered" >      for (const deg of conceptDegree.values()) { <span class="cstat-no" title="statement not covered" >if (deg &gt; maxDeg) <span class="cstat-no" title="statement not covered" >maxDeg = deg; }</span></span></span>
+      const update = <span class="cstat-no" title="statement not covered" >ctx.db.prepare(</span>
+        `UPDATE nodes SET properties = json_set(COALESCE(properties, '{}'), '$.importance', ?) WHERE id = ?`,
+      );
+<span class="cstat-no" title="statement not covered" >      ctx.db.<span class="fstat-no" title="function not covered" >transaction(() =&gt; {</span></span>
+<span class="cstat-no" title="statement not covered" >        for (const [cid, deg] of conceptDegree) {</span>
+          const importance = <span class="cstat-no" title="statement not covered" >Math.max(1, Math.ceil((deg / maxDeg) * 5));</span>
+<span class="cstat-no" title="statement not covered" >          update.run(importance, cid);</span>
+        }
+      })();
+    }
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    if (edges.length &gt; <span class="cstat-no" title="statement not covered" >0) insertEdges(ctx.db, edges);</span></span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    ctx.onProgress?.({ phase: 'contextual-proximity', message: `${edges.length} CO_OCCURS edges, ${conceptDegree.size} concepts scored` });</span>
+<span class="cstat-no" title="statement not covered" >    return { coOccursEdges: edges.length, conceptsScored: conceptDegree.size };</span>
+  },
+};
+&nbsp;</pre></td></tr></table></pre>
+                <div class='push'></div><!-- for sticky footer -->
+            </div><!-- /wrapper -->
+            <div class='footer quiet pad2 space-top1 center small'>
+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-07-25T08:38:16.548Z
+            </div>
+        <script src="../../../prettify.js"></script>
+        <script>
+            window.onload = function () {
+                prettyPrint();
+            };
+        </script>
+        <script src="../../../sorter.js"></script>
+        <script src="../../../block-navigation.js"></script>
+    </body>
+</html>