@jbrowse/plugin-wiggle 2.5.0 → 2.6.1

package/dist/shared/SetMinMaxDialog.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 export default function SetMinMaxDlg(props: {
     model: {
         minScore: number;
@@ -7,4 +8,4 @@ export default function SetMinMaxDlg(props: {
         setMaxScore: Function;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/shared/YScaleBar.d.ts

@@ -1,8 +1,10 @@
+import React from 'react';
 import { axisPropsFromTickScale } from 'react-d3-axis-mod';
+type Ticks = ReturnType<typeof axisPropsFromTickScale>;
 declare const _default: ({ model, orientation, }: {
     model: {
-        ticks?: ReturnType<typeof axisPropsFromTickScale>;
+        ticks?: Ticks;
     };
     orientation?: string | undefined;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 export default _default;

package/dist/shared/YScaleBar.js

@@ -7,7 +7,7 @@ const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mobx_react_1 = require("mobx-react");
 const react_d3_axis_mod_1 = require("react-d3-axis-mod");
-exports.default = (0, mobx_react_1.observer)(function ({ model, orientation, }) {
+exports.default = (0, mobx_react_1.observer)(function YScaleBar({ model, orientation, }) {
     const { ticks } = model;
     const theme = (0, material_1.useTheme)();
     return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, { ...ticks, shadow: 2, format: (n) => n, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT }, bg: theme.palette.background.default, fg: theme.palette.text.primary })) : null;

package/dist/shared/YScaleBar.js.map

@@ -1 +1 @@
-{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../src/shared/YScaleBar.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAwC;AACxC,2CAAqC;AACrC,yDAA6E;AAE7E,kBAAe,IAAA,qBAAQ,EAAC,UAAU,EAChC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,EACxD,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EACpC,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,GAC9B,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../src/shared/YScaleBar.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAwC;AACxC,2CAAqC;AACrC,yDAA6E;AAI7E,kBAAe,IAAA,qBAAQ,EAAC,SAAS,SAAS,CAAC,EACzC,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,OACC,KAAK,EACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,EACxD,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO,EACpC,EAAE,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,GAC9B,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA"}

package/dist/shared/configShared.d.ts

@@ -0,0 +1,85 @@
+/**
+ * #config SharedWiggleDisplay
+ */
+export default function sharedWiggleConfigFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    autoscale: {
+        type: string;
+        defaultValue: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    minimalTicks: {
+        type: string;
+        defaultValue: boolean;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    minScore: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    maxScore: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    numStdDev: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    scaleType: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    inverted: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/dist/shared/configShared.js

@@ -0,0 +1,84 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const configuration_1 = require("@jbrowse/core/configuration");
+const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+const mobx_state_tree_1 = require("mobx-state-tree");
+/**
+ * #config SharedWiggleDisplay
+ */
+function sharedWiggleConfigFactory() {
+    return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
+        /**
+         * #slot
+         */
+        autoscale: {
+            type: 'stringEnum',
+            defaultValue: 'local',
+            model: mobx_state_tree_1.types.enumeration('Autoscale type', [
+                'global',
+                'local',
+                'globalsd',
+                'localsd',
+                'zscore',
+            ]),
+            description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
+        },
+        /**
+         * #slot
+         */
+        minimalTicks: {
+            type: 'boolean',
+            defaultValue: false,
+            description: 'use the minimal amount of ticks',
+        },
+        /**
+         * #slot
+         */
+        minScore: {
+            type: 'number',
+            defaultValue: Number.MIN_VALUE,
+            description: 'minimum value for the y-scale',
+        },
+        /**
+         * #slot
+         */
+        maxScore: {
+            type: 'number',
+            description: 'maximum value for the y-scale',
+            defaultValue: Number.MAX_VALUE,
+        },
+        /**
+         * #slot
+         */
+        numStdDev: {
+            type: 'number',
+            description: 'number of standard deviations to use for autoscale types globalsd or localsd',
+            defaultValue: 3,
+        },
+        /**
+         * #slot
+         */
+        scaleType: {
+            type: 'stringEnum',
+            model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
+            description: 'The type of scale to use',
+            defaultValue: 'linear',
+        },
+        /**
+         * #slot
+         */
+        inverted: {
+            type: 'boolean',
+            description: 'draw upside down',
+            defaultValue: false,
+        },
+    }, {
+        /**
+         * #baseConfiguration
+         */
+        baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema,
+        explicitlyTyped: true,
+    });
+}
+exports.default = sharedWiggleConfigFactory;
+//# sourceMappingURL=configShared.js.map

package/dist/shared/configShared.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configShared.js","sourceRoot":"","sources":["../../src/shared/configShared.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,kFAAkF;AAClF,qDAAuC;AAEvC;;GAEG;AACH,SAAwB,yBAAyB;IAC/C,OAAO,IAAA,mCAAmB,EACxB,0BAA0B,EAC1B;QACE;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,YAAY,EAAE,OAAO;YACrB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,gBAAgB,EAAE;gBACzC,QAAQ;gBACR,OAAO;gBACP,UAAU;gBACV,SAAS;gBACT,QAAQ;aACT,CAAC;YACF,WAAW,EACT,sFAAsF;SACzF;QAED;;WAEG;QACH,YAAY,EAAE;YACZ,IAAI,EAAE,SAAS;YACf,YAAY,EAAE,KAAK;YACnB,WAAW,EAAE,iCAAiC;SAC/C;QAED;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,MAAM,CAAC,SAAS;YAC9B,WAAW,EAAE,+BAA+B;SAC7C;QACD;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,WAAW,EAAE,+BAA+B;YAC5C,YAAY,EAAE,MAAM,CAAC,SAAS;SAC/B;QACD;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,QAAQ;YACd,WAAW,EACT,8EAA8E;YAChF,YAAY,EAAE,CAAC;SAChB;QACD;;WAEG;QACH,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YACzD,WAAW,EAAE,0BAA0B;YACvC,YAAY,EAAE,QAAQ;SACvB;QAED;;WAEG;QACH,QAAQ,EAAE;YACR,IAAI,EAAE,SAAS;YACf,WAAW,EAAE,kBAAkB;YAC/B,YAAY,EAAE,KAAK;SACpB;KACF,EACD;QACE;;WAEG;QACH,iBAAiB,EAAE,yDAA6B;QAChD,eAAe,EAAE,IAAI;KACtB,CACF,CAAA;AACH,CAAC;AAlFD,4CAkFC"}