@jbrowse/plugin-wiggle 2.5.0 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.js +2 -1
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/dist/LinearWiggleDisplay/index.js +27 -4
- package/dist/LinearWiggleDisplay/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -67
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/dist/LinearWiggleDisplay/models/model.js +17 -432
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js +21 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -2
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/dist/MultiLinearWiggleDisplay/index.js +25 -2
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -66
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/dist/MultiLinearWiggleDisplay/models/model.js +335 -508
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +20 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/dist/MultiWiggleRendering.d.ts +2 -1
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/WiggleBaseRenderer.d.ts +1 -1
- package/dist/WiggleRendering.d.ts +2 -1
- package/dist/index.d.ts +222 -198
- package/dist/shared/SetMinMaxDialog.d.ts +2 -1
- package/dist/shared/YScaleBar.d.ts +4 -2
- package/dist/shared/YScaleBar.js +1 -1
- package/dist/shared/YScaleBar.js.map +1 -1
- package/dist/shared/configShared.d.ts +85 -0
- package/dist/shared/configShared.js +84 -0
- package/dist/shared/configShared.js.map +1 -0
- package/dist/shared/modelShared.d.ts +576 -0
- package/dist/shared/modelShared.js +480 -0
- package/dist/shared/modelShared.js.map +1 -0
- package/dist/util.d.ts +0 -3
- package/dist/util.js +1 -11
- package/dist/util.js.map +1 -1
- package/esm/BigWigAdapter/BigWigAdapter.js +2 -1
- package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
- package/esm/LinearWiggleDisplay/index.js +2 -2
- package/esm/LinearWiggleDisplay/index.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
- package/esm/LinearWiggleDisplay/models/configSchema.js +3 -67
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
- package/esm/LinearWiggleDisplay/models/model.js +20 -435
- package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js +14 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -1
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
- package/esm/MultiLinearWiggleDisplay/index.js +2 -2
- package/esm/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -66
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
- package/esm/MultiLinearWiggleDisplay/models/model.js +337 -512
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +13 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/esm/MultiWiggleRendering.d.ts +2 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/WiggleBaseRenderer.d.ts +1 -1
- package/esm/WiggleRendering.d.ts +2 -1
- package/esm/index.d.ts +222 -198
- package/esm/shared/SetMinMaxDialog.d.ts +2 -1
- package/esm/shared/YScaleBar.d.ts +4 -2
- package/esm/shared/YScaleBar.js +1 -1
- package/esm/shared/YScaleBar.js.map +1 -1
- package/esm/shared/configShared.d.ts +85 -0
- package/esm/shared/configShared.js +81 -0
- package/esm/shared/configShared.js.map +1 -0
- package/esm/shared/modelShared.d.ts +576 -0
- package/esm/shared/modelShared.js +454 -0
- package/esm/shared/modelShared.js.map +1 -0
- package/esm/util.d.ts +0 -3
- package/esm/util.js +0 -9
- package/esm/util.js.map +1 -1
- package/package.json +3 -3
- package/src/BigWigAdapter/BigWigAdapter.ts +2 -4
- package/src/LinearWiggleDisplay/index.ts +2 -2
- package/src/LinearWiggleDisplay/models/configSchema.ts +4 -73
- package/src/LinearWiggleDisplay/models/model.tsx +22 -503
- package/src/LinearWiggleDisplay/models/renderSvg.tsx +29 -0
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +1 -2
- package/src/MultiLineRenderer/MultiLineRenderer.ts +1 -2
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +1 -1
- package/src/MultiLinearWiggleDisplay/index.ts +2 -2
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +4 -72
- package/src/MultiLinearWiggleDisplay/models/model.tsx +132 -371
- package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +26 -0
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +1 -2
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +1 -2
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +1 -1
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +2 -2
- package/src/shared/YScaleBar.tsx +4 -2
- package/src/shared/configShared.ts +90 -0
- package/src/shared/modelShared.ts +510 -0
- package/src/util.ts +1 -10
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@@ -3,7 +3,7 @@ import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType'
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import configSchemaFactory from './models/configSchema'
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import modelFactory from './models/model'
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import
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import { lazy } from 'react'
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export default (pluginManager: PluginManager) => {
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pluginManager.addDisplayType(() => {
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@@ -15,7 +15,7 @@ export default (pluginManager: PluginManager) => {
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stateModel: modelFactory(pluginManager, configSchema),
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trackType: 'MultiQuantitativeTrack',
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viewType: 'LinearGenomeView',
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ReactComponent,
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ReactComponent: lazy(() => import('./components/WiggleDisplayComponent')),
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})
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})
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}
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@@ -1,8 +1,10 @@
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import { ConfigurationSchema } from '@jbrowse/core/configuration'
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import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view'
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import { types } from 'mobx-state-tree'
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import PluginManager from '@jbrowse/core/PluginManager'
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// locals
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import sharedWiggleConfigFactory from '../../shared/configShared'
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/**
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* #config MultiLinearWiggleDisplay
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*/
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return ConfigurationSchema(
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'MultiLinearWiggleDisplay',
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{
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/**
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* #slot
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*/
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autoscale: {
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type: 'stringEnum',
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defaultValue: 'local',
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model: types.enumeration('Autoscale type', [
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'global',
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'local',
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'globalsd',
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'localsd',
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'zscore',
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]),
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description:
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'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
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},
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/**
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* #slot
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*/
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minimalTicks: {
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type: 'boolean',
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defaultValue: false,
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description: 'use the minimal amount of ticks',
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},
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/**
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* #slot
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minScore: {
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type: 'number',
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defaultValue: Number.MIN_VALUE,
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description: 'minimum value for the y-scale',
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},
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/**
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* #slot
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maxScore: {
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type: 'number',
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description: 'maximum value for the y-scale',
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defaultValue: Number.MAX_VALUE,
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},
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/**
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* #slot
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numStdDev: {
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type: 'number',
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description:
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'number of standard deviations to use for autoscale types globalsd or localsd',
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defaultValue: 3,
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},
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/**
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scaleType: {
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type: 'stringEnum',
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model: types.enumeration('Scale type', ['linear', 'log']), // todo zscale
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description: 'The type of scale to use',
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defaultValue: 'linear',
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},
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/**
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inverted: {
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type: 'boolean',
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description: 'draw upside down',
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defaultValue: false,
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},
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*/
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/**
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* #baseConfiguration
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*/
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baseConfiguration:
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baseConfiguration: sharedWiggleConfigFactory(),
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explicitlyTyped: true,
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},
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)
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