@jbrowse/plugin-wiggle 2.5.0 → 2.6.1

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Files changed (151) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.js +2 -1
  2. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  3. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  4. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  5. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  6. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  7. package/dist/LinearWiggleDisplay/index.js +27 -4
  8. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  9. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  10. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -67
  11. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  12. package/dist/LinearWiggleDisplay/models/model.d.ts +147 -342
  13. package/dist/LinearWiggleDisplay/models/model.js +17 -432
  14. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  15. package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  16. package/dist/LinearWiggleDisplay/models/renderSvg.js +21 -0
  17. package/dist/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
  18. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
  19. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  20. package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -1
  21. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  22. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  23. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  24. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +2 -2
  25. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  26. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  27. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  28. package/dist/MultiLinearWiggleDisplay/index.js +25 -2
  29. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
  30. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  31. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -66
  32. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  33. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  34. package/dist/MultiLinearWiggleDisplay/models/model.js +335 -508
  35. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  36. package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  37. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +20 -0
  38. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
  39. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
  40. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  41. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
  42. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  43. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  44. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
  45. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  46. package/dist/MultiWiggleRendering.d.ts +2 -1
  47. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -2
  48. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  49. package/dist/Tooltip.d.ts +1 -1
  50. package/dist/WiggleBaseRenderer.d.ts +1 -1
  51. package/dist/WiggleRendering.d.ts +2 -1
  52. package/dist/index.d.ts +222 -198
  53. package/dist/shared/SetMinMaxDialog.d.ts +2 -1
  54. package/dist/shared/YScaleBar.d.ts +4 -2
  55. package/dist/shared/YScaleBar.js +1 -1
  56. package/dist/shared/YScaleBar.js.map +1 -1
  57. package/dist/shared/configShared.d.ts +85 -0
  58. package/dist/shared/configShared.js +84 -0
  59. package/dist/shared/configShared.js.map +1 -0
  60. package/dist/shared/modelShared.d.ts +576 -0
  61. package/dist/shared/modelShared.js +480 -0
  62. package/dist/shared/modelShared.js.map +1 -0
  63. package/dist/util.d.ts +0 -3
  64. package/dist/util.js +1 -11
  65. package/dist/util.js.map +1 -1
  66. package/esm/BigWigAdapter/BigWigAdapter.js +2 -1
  67. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  68. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -1
  69. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  70. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  71. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -1
  72. package/esm/LinearWiggleDisplay/index.js +2 -2
  73. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  74. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +18 -35
  75. package/esm/LinearWiggleDisplay/models/configSchema.js +3 -67
  76. package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  77. package/esm/LinearWiggleDisplay/models/model.d.ts +147 -342
  78. package/esm/LinearWiggleDisplay/models/model.js +20 -435
  79. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  80. package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  81. package/esm/LinearWiggleDisplay/models/renderSvg.js +14 -0
  82. package/esm/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
  83. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
  84. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  85. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -1
  86. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  87. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -1
  88. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -1
  89. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +1 -1
  90. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  91. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  92. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -2
  93. package/esm/MultiLinearWiggleDisplay/index.js +2 -2
  94. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -1
  95. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +24 -44
  96. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -66
  97. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  98. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +263 -175
  99. package/esm/MultiLinearWiggleDisplay/models/model.js +337 -512
  100. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  101. package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  102. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +13 -0
  103. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
  104. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
  105. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  106. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
  107. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  108. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -1
  109. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
  110. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  111. package/esm/MultiWiggleRendering.d.ts +2 -1
  112. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -1
  113. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  114. package/esm/Tooltip.d.ts +1 -1
  115. package/esm/WiggleBaseRenderer.d.ts +1 -1
  116. package/esm/WiggleRendering.d.ts +2 -1
  117. package/esm/index.d.ts +222 -198
  118. package/esm/shared/SetMinMaxDialog.d.ts +2 -1
  119. package/esm/shared/YScaleBar.d.ts +4 -2
  120. package/esm/shared/YScaleBar.js +1 -1
  121. package/esm/shared/YScaleBar.js.map +1 -1
  122. package/esm/shared/configShared.d.ts +85 -0
  123. package/esm/shared/configShared.js +81 -0
  124. package/esm/shared/configShared.js.map +1 -0
  125. package/esm/shared/modelShared.d.ts +576 -0
  126. package/esm/shared/modelShared.js +454 -0
  127. package/esm/shared/modelShared.js.map +1 -0
  128. package/esm/util.d.ts +0 -3
  129. package/esm/util.js +0 -9
  130. package/esm/util.js.map +1 -1
  131. package/package.json +3 -3
  132. package/src/BigWigAdapter/BigWigAdapter.ts +2 -4
  133. package/src/LinearWiggleDisplay/index.ts +2 -2
  134. package/src/LinearWiggleDisplay/models/configSchema.ts +4 -73
  135. package/src/LinearWiggleDisplay/models/model.tsx +22 -503
  136. package/src/LinearWiggleDisplay/models/renderSvg.tsx +29 -0
  137. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +1 -2
  138. package/src/MultiLineRenderer/MultiLineRenderer.ts +1 -2
  139. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +1 -1
  140. package/src/MultiLinearWiggleDisplay/index.ts +2 -2
  141. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +4 -72
  142. package/src/MultiLinearWiggleDisplay/models/model.tsx +132 -371
  143. package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +26 -0
  144. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +1 -2
  145. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +1 -2
  146. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +1 -1
  147. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +2 -2
  148. package/src/shared/YScaleBar.tsx +4 -2
  149. package/src/shared/configShared.ts +90 -0
  150. package/src/shared/modelShared.ts +510 -0
  151. package/src/util.ts +1 -10
@@ -1,13 +1,13 @@
1
1
  import { ConfigurationSchema } from '@jbrowse/core/configuration'
2
- import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view'
3
2
  import { types } from 'mobx-state-tree'
4
3
  import PluginManager from '@jbrowse/core/PluginManager'
5
4
 
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+ // locals
6
+ import sharedWiggleConfigFactory from '../../shared/configShared'
7
+
6
8
  /**
7
9
  * #config LinearWiggleDisplay
8
10
  */
9
- function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
10
-
11
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  export default function WiggleConfigFactory(pluginManager: PluginManager) {
12
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  const XYPlotRendererConfigSchema =
13
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  pluginManager.getRendererType('XYPlotRenderer').configSchema
@@ -19,75 +19,6 @@ export default function WiggleConfigFactory(pluginManager: PluginManager) {
19
19
  return ConfigurationSchema(
20
20
  'LinearWiggleDisplay',
21
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  {
22
- /**
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- * #slot
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- */
25
- autoscale: {
26
- type: 'stringEnum',
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- defaultValue: 'local',
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- model: types.enumeration('Autoscale type', [
29
- 'global',
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- 'local',
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- 'globalsd',
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- 'localsd',
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- 'zscore',
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- ]),
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- description:
36
- 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
37
- },
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-
39
- /**
40
- * #slot
41
- */
42
- minimalTicks: {
43
- type: 'boolean',
44
- defaultValue: false,
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- description: 'use the minimal amount of ticks',
46
- },
47
-
48
- /**
49
- * #slot
50
- */
51
- minScore: {
52
- type: 'number',
53
- defaultValue: Number.MIN_VALUE,
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- description: 'minimum value for the y-scale',
55
- },
56
- /**
57
- * #slot
58
- */
59
- maxScore: {
60
- type: 'number',
61
- description: 'maximum value for the y-scale',
62
- defaultValue: Number.MAX_VALUE,
63
- },
64
- /**
65
- * #slot
66
- */
67
- numStdDev: {
68
- type: 'number',
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- description:
70
- 'number of standard deviations to use for autoscale types globalsd or localsd',
71
- defaultValue: 3,
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- },
73
- /**
74
- * #slot
75
- */
76
- scaleType: {
77
- type: 'stringEnum',
78
- model: types.enumeration('Scale type', ['linear', 'log']), // todo zscale
79
- description: 'The type of scale to use',
80
- defaultValue: 'linear',
81
- },
82
- /**
83
- * #slot
84
- */
85
- inverted: {
86
- type: 'boolean',
87
- description: 'draw upside down',
88
- defaultValue: false,
89
- },
90
-
91
22
  /**
92
23
  * #slot
93
24
  */
@@ -109,7 +40,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager) {
109
40
  /**
110
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  * #baseConfiguration
111
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  */
112
- baseConfiguration: baseLinearDisplayConfigSchema,
43
+ baseConfiguration: sharedWiggleConfigFactory(),
113
44
  explicitlyTyped: true,
114
45
  },
115
46
  )