@jbrowse/plugin-wiggle 2.5.0 → 2.6.1

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Source } from '../../util';
 export default function SetColorDialog({ model, handleClose, }: {
     model: {
@@ -6,4 +7,4 @@ export default function SetColorDialog({ model, handleClose, }: {
         clearLayout: () => void;
     };
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js

@@ -35,13 +35,13 @@ const clone_1 = __importDefault(require("clone"));
 // locals
 const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
 const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
-const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
 const util_2 = require("./util");
 // icons
 const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
 const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
 const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
 const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
+const UriLink_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/UriLink"));
 const useStyles = (0, mui_1.makeStyles)()({
     content: {
         minWidth: 800,
@@ -143,7 +143,7 @@ function SourcesGrid({ rows, onChange, showTips, }) {
                         sortingOrder: [null],
                         renderCell: (params) => {
                             const { value } = params;
-                            return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value })) : ((0, util_1.getStr)(value));
+                            return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(UriLink_1.default, { value: value })) : ((0, util_1.getStr)(value));
                         },
                         // @ts-ignore
                         width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),

package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map

@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts

@@ -20,6 +20,6 @@ declare const WiggleTooltip: (props: {
     clientMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents?: TooltipContentsComponent;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default WiggleTooltip;
 export { default as Tooltip } from '../../Tooltip';

package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,11 +1,12 @@
+import React from 'react';
 import { WiggleDisplayModel } from '../models/model';
 export declare const StatBars: (props: {
     model: WiggleDisplayModel;
     orientation?: string;
     exportSVG?: boolean;
-}) => JSX.Element | null;
+}) => React.JSX.Element | null;
 declare const _default: (props: {
     model: WiggleDisplayModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;
 export { default as YScaleBar } from '../../shared/YScaleBar';

package/dist/MultiLinearWiggleDisplay/index.js

@@ -1,4 +1,27 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
@@ -6,7 +29,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
 const configSchema_1 = __importDefault(require("./models/configSchema"));
 const model_1 = __importDefault(require("./models/model"));
-const WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
+const react_1 = require("react");
 exports.default = (pluginManager) => {
     pluginManager.addDisplayType(() => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
@@ -17,7 +40,7 @@ exports.default = (pluginManager) => {
             stateModel: (0, model_1.default)(pluginManager, configSchema),
             trackType: 'MultiQuantitativeTrack',
             viewType: 'LinearGenomeView',
-            ReactComponent: WiggleDisplayComponent_1.default,
+            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
         });
     });
 };

package/dist/MultiLinearWiggleDisplay/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iGAAgE;AAEhE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iCAA4B;AAE5B,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,qCAAqC,GAAC,CAAC;SAC1E,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts

@@ -3,86 +3,66 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
     /**
      * #slot
      */
-    autoscale: {
+    defaultRendering: {
         type: string;
-        defaultValue: string;
         model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
+        defaultValue: string;
     };
     /**
      * #slot
      */
+    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        MultiRowXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    /**
+     * #slot
+     */
+    height: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    autoscale: {
+        type: string;
+        defaultValue: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+    };
     minimalTicks: {
         type: string;
         defaultValue: boolean;
         description: string;
     };
-    /**
-     * #slot
-     */
     minScore: {
         type: string;
         defaultValue: number;
         description: string;
     };
-    /**
-     * #slot
-     */
     maxScore: {
         type: string;
         description: string;
         defaultValue: number;
     };
-    /**
-     * #slot
-     */
     numStdDev: {
         type: string;
         description: string;
         defaultValue: number;
     };
-    /**
-     * #slot
-     */
     scaleType: {
         type: string;
         model: import("mobx-state-tree").ISimpleType<string>;
         description: string;
         defaultValue: string;
     };
-    /**
-     * #slot
-     */
     inverted: {
         type: string;
         description: string;
         defaultValue: boolean;
     };
-    /**
-     * #slot
-     */
-    defaultRendering: {
-        type: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        defaultValue: string;
-    };
-    /**
-     * #slot
-     */
-    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        MultiRowXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-        MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    /**
-     * #slot
-     */
-    height: {
-        type: string;
-        defaultValue: number;
-    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     maxFeatureScreenDensity: {
         type: string;
@@ -105,4 +85,4 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
         defaultValue: string;
         contextVariable: string[];
     };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;

package/dist/MultiLinearWiggleDisplay/models/configSchema.js

@@ -1,8 +1,12 @@
 "use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
 const mobx_state_tree_1 = require("mobx-state-tree");
+// locals
+const configShared_1 = __importDefault(require("../../shared/configShared"));
 /**
  * #config MultiLinearWiggleDisplay
  */
@@ -14,70 +18,6 @@ function WiggleConfigFactory(pluginManager) {
     const MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
     const MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
     return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
-        /**
-         * #slot
-         */
-        autoscale: {
-            type: 'stringEnum',
-            defaultValue: 'local',
-            model: mobx_state_tree_1.types.enumeration('Autoscale type', [
-                'global',
-                'local',
-                'globalsd',
-                'localsd',
-                'zscore',
-            ]),
-            description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
-        },
-        /**
-         * #slot
-         */
-        minimalTicks: {
-            type: 'boolean',
-            defaultValue: false,
-            description: 'use the minimal amount of ticks',
-        },
-        /**
-         * #slot
-         */
-        minScore: {
-            type: 'number',
-            defaultValue: Number.MIN_VALUE,
-            description: 'minimum value for the y-scale',
-        },
-        /**
-         * #slot
-         */
-        maxScore: {
-            type: 'number',
-            description: 'maximum value for the y-scale',
-            defaultValue: Number.MAX_VALUE,
-        },
-        /**
-         * #slot
-         */
-        numStdDev: {
-            type: 'number',
-            description: 'number of standard deviations to use for autoscale types globalsd or localsd',
-            defaultValue: 3,
-        },
-        /**
-         * #slot
-         */
-        scaleType: {
-            type: 'stringEnum',
-            model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
-            description: 'The type of scale to use',
-            defaultValue: 'linear',
-        },
-        /**
-         * #slot
-         */
-        inverted: {
-            type: 'boolean',
-            description: 'draw upside down',
-            defaultValue: false,
-        },
         /**
          * #slot
          */
@@ -113,7 +53,7 @@ function WiggleConfigFactory(pluginManager) {
         /**
          * #baseConfiguration
          */
-        baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema,
+        baseConfiguration: (0, configShared_1.default)(),
         explicitlyTyped: true,
     });
 }

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