npm - @jbrowse/plugin-wiggle - Versions diffs - 2.4.2 → 2.6.1 - Mend

@jbrowse/plugin-wiggle 2.4.2 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (220) hide show

package/dist/MultiLinearWiggleDisplay/models/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts ADDED Viewed

@@ -0,0 +1,4 @@
+import React from 'react';
+import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
+import { WiggleDisplayModel } from './model';
+export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;

package/dist/MultiLinearWiggleDisplay/models/renderSvg.js ADDED Viewed

@@ -0,0 +1,20 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.renderSvg = void 0;
+const react_1 = __importDefault(require("react"));
+const util_1 = require("@jbrowse/core/util");
+const mobx_1 = require("mobx");
+const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
+async function renderSvg(self, opts, superRenderSvg) {
+    await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
+    const { offsetPx } = (0, util_1.getContainingView)(self);
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
+        react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
+            react_1.default.createElement(WiggleDisplayComponent_1.StatBars, { model: self, orientation: "left", exportSVG: true }))));
+}
+exports.renderSvg = renderSvg;
+//# sourceMappingURL=renderSvg.js.map

package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/models/renderSvg.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAAsD;AACtD,+BAA2B;AAM3B,iFAA+D;AAExD,KAAK,UAAU,SAAS,CAC7B,IAAwB,EACxB,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,CAAC,IAAI,CAAC,0BAA0B,CAAC,CAAA;IACnE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAA0B,CAAA;IACrE,OAAO,CACL;QACE,qCAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;QAC/C,qCAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;YAClD,8BAAC,iCAAQ,IAAC,KAAK,EAAE,IAAI,EAAE,WAAW,EAAC,MAAM,EAAC,SAAS,SAAG,CACpD,CACH,CACJ,CAAA;AACH,CAAC;AAfD,8BAeC"}

package/dist/MultiQuantitativeTrack/configSchema.d.ts CHANGED Viewed

@@ -1,3 +1,75 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    name: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    assemblyNames: {
+        description: string;
+        type: string;
+        defaultValue: string[];
+    };
+    description: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    category: {
+        description: string;
+        type: string;
+        defaultValue: never[];
+    };
+    metadata: {
+        type: string;
+        description: string;
+        defaultValue: {};
+    };
+    adapter: import("mobx-state-tree").IAnyModelType;
+    textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        indexingAttributes: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        indexingFeatureTypesToExclude: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        textSearchAdapter: import("mobx-state-tree").IAnyModelType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        feature: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        subfeatures: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        depth: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        config: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        hideUris: {
+            type: string;
+            defaultValue: boolean;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
 export default configSchema;

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js CHANGED Viewed

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("../util");
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"MultiRowLineRenderer.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/MultiRowLineRenderer.ts"],"names":[],"mappings":";;;;;AAAA,6CAAqD;AACrD,sCAAoC;AACpC,+EAE8B;AAE9B,MAAqB,oBAAqB,SAAQ,4BAAkB;IAClE,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;QACxD,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QACnD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;QACV,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;gBAC7B,MAAM;gBACN,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,GAAG,CAAC,SAAS,EAAE,CAAA;YACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,GAAG,CAAC,MAAM,EAAE,CAAA;YACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;YACxB,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;QACxC,CAAC,CAAC,CAAA;QACF,GAAG,CAAC,OAAO,EAAE,CAAA;QACb,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AA5BD,uCA4BC"}

package/dist/MultiRowLineRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,52 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js CHANGED Viewed

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const util_1 = require("../util");
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MultiRowXYPlotRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,69 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        /**
+         * #slot
+         */
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts CHANGED Viewed

@@ -18,7 +18,7 @@ export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
         scoreMax: number;
     }>;
     getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
-    estimateRegionsStats(_regions: Region[]): Promise<{
+    getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
         featureDensity: number;
     }>;
     getSources(): Promise<{

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js CHANGED Viewed

@@ -68,7 +68,7 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
         }, opts.signal);
     }
     // always render bigwig instead of calculating a feature density for it
-    async estimateRegionsStats(_regions) {
+    async getMultiRegionFeatureDensityStats(_regions) {
         return { featureDensity: 0 };
     }
     // in another adapter type, this could be dynamic depending on region or
@@ -83,10 +83,10 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
     }
     freeResources() { }
 }
-exports.default = MultiWiggleAdapter;
 MultiWiggleAdapter.capabilities = [
     'hasResolution',
     'hasLocalStats',
     'hasGlobalStats',
 ];
+exports.default = MultiWiggleAdapter;
 //# sourceMappingURL=MultiWiggleAdapter.js.map

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MultiWiggleAdapter/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,19 @@
-declare const MultiWiggleAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    subadapters: {
+        type: string;
+        defaultValue: never[];
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    bigWigs: {
+        type: string;
+        description: string;
+        defaultValue: never[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default MultiWiggleAdapter;

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
-/// <reference types="react" />
+import React from 'react';
 import { AddTrackModel } from '@jbrowse/plugin-data-management';
 export default function MultiWiggleWidget({ model }: {
     model: AddTrackModel;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js CHANGED Viewed

@@ -71,7 +71,7 @@ function MultiWiggleWidget({ model }) {
                 var _a;
                 const session = (0, util_1.getSession)(model);
                 const trackId = [
-                    `${trackName.toLowerCase().replace(/ /g, '_')}-${Date.now()}`,
+                    `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
                     `${session.adminMode ? '' : '-sessionTrack'}`,
                 ].join('');
                 // allow list of bigwigs in JSON format or line-by-line

package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"AddTrackWorkflow.js","sourceRoot":"","sources":["../../src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAAwD;AACxD,uCAA0C;AAC1C,6CAA2D;AAC3D,sDAA6D;AAG7D,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,KAAK,EAAE,MAAM;KACd;IACD,KAAK,EAAE;QACL,MAAM,EAAE,KAAK,CAAC,OAAO,EAAE;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE;KACzB;IACD,MAAM,EAAE;QACN,SAAS,EAAE,EAAE;QACb,YAAY,EAAE,GAAG;QACjB,OAAO,EAAE,OAAO;KACjB;CACF,CAAC,CAAC,CAAA;AAEH,SAAwB,iBAAiB,CAAC,EAAE,KAAK,EAA4B;IAC3E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,IAAA,gBAAQ,EAAC,cAAc,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;IACvE,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B;YACE,+FAA2D;YAC3D,qHAGK,CACF;QAEL,8BAAC,oBAAS,IACR,SAAS,QACT,IAAI,EAAE,EAAE,EACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAE,qDAAqD,EAClE,OAAO,EAAC,UAAU,EAClB,SAAS,EAAE,OAAO,CAAC,OAAO,GAC1B;QAEF,8BAAC,iBAAM,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAC,OAAO;;YAE1C,yCACE,IAAI,EAAC,MAAM,EACX,MAAM,QACN,QAAQ,QACR,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;oBACvB,MAAM,GAAG,GAAG,CAAC,GAAG,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK,KAAI,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;wBAClD,IAAI,EAAE,eAAe;wBACrB,cAAc,EAAE,iBAAU;4BACxB,CAAC,CAAC;gCACE,SAAS,EAAG,IAAgC,CAAC,IAAI;gCACjD,YAAY,EAAE,mBAAmB;6BAClC;4BACH,CAAC,CAAC,IAAA,0BAAiB,EAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;wBACrC,MAAM,EAAE,IAAI,CAAC,IAAI;qBAClB,CAAC,CAAC,CAAA;oBACH,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAA;gBACtC,CAAC,GACD,CACK;QACT,8BAAC,oBAAS,IACR,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EACnD,UAAU,EAAC,YAAY,GACvB;QACF,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;;gBACZ,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;gBAEjC,MAAM,OAAO,GAAG;oBACd,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;oBAC/D,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,eAAe,EAAE;iBAC9C,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;gBAEV,uDAAuD;gBACvD,IAAI,OAAO,CAAA;gBACX,IAAI;oBACF,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;iBAC1B;gBAAC,OAAO,CAAC,EAAE;oBACV,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,YAAY,CAAC,CAAA;iBAClC;gBACD,MAAM,GAAG,GACP,OAAO,OAAO,CAAC,CAAC,CAAC,KAAK,QAAQ;oBAC5B,CAAC,CAAC,EAAE,OAAO,EAAE;oBACb,CAAC,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,CAAA;gBAE9B,OAAO,CAAC,YAAY,CAAC;oBACnB,OAAO;oBACP,IAAI,EAAE,wBAAwB;oBAC9B,IAAI,EAAE,SAAS;oBACf,aAAa,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC/B,OAAO,EAAE;wBACP,IAAI,EAAE,oBAAoB;wBAC1B,GAAG,GAAG;qBACP;iBACF,CAAC,CAAA;gBACF,MAAA,KAAK,CAAC,IAAI,0CAAE,SAAS,CAAC,OAAO,CAAC,CAAA;gBAE9B,KAAK,CAAC,SAAS,EAAE,CAAA;gBACjB,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;YAC3B,CAAC,aAGM;QAET,8DAAyB;QACzB;YACE;;gBAEwB,GAAG;gBACzB,4CAAO,yHAAyH,CAAQ;gBAAC,GAAG;gEAEzI;YACL,8JAGK,CACF,CACC,CACT,CAAA;AACH,CAAC;AA3GD,oCA2GC"}

package/dist/MultiWiggleRendering.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-/// <reference types="react" />
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 import { Source } from './util';
@@ -16,6 +16,6 @@ declare function WiggleRendering(props: {
     displayModel: {
         isMultiRow: boolean;
     };
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof WiggleRendering;
 export default _default;

package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js CHANGED Viewed

@@ -26,8 +26,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const util_1 = require("@jbrowse/core/util");
 const drawxy_1 = require("../drawxy");
-const util_1 = require("../util");
+const util_2 = require("../util");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
     // @ts-expect-error
@@ -44,7 +45,7 @@ class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
             const { reducedFeatures } = (0, drawxy_1.drawXY)(ctx, {
                 ...props,
                 features,
-                offset: util_1.YSCALEBAR_LABEL_OFFSET,
+                offset: util_2.YSCALEBAR_LABEL_OFFSET,
                 colorCallback: () => source.color || 'blue',
                 Color,
             });

package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"MultiXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;~~AACA~~,sCAAkC;AAClC,~~kCAAyD~~;~~AAEzD~~,+EAE8B;AAE9B,MAAqB,mBAAoB,SAAQ,4BAAkB;IACjE,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACnC,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,KAAK,GAAG,MAAM,kDAAO,OAAO,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACxD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;YAC5B,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,SAAQ;aACT;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,eAAM,EAAC,GAAG,EAAE;gBACtC,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM,EAAE,6BAAsB;gBAC9B,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;gBAC3C,KAAK;aACN,CAAC,CAAA;YACF,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;SACvC;QACD,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AAvBD,sCAuBC"}
1	+ {"version":3,"file":"MultiXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAAqD;AACrD,sCAAkC;AAClC,kCAAgD;AAEhD,+EAE8B;AAE9B,MAAqB,mBAAoB,SAAQ,4BAAkB;IACjE,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACnC,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,MAAM,KAAK,GAAG,MAAM,kDAAO,OAAO,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACxD,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;YAC5B,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,SAAQ;aACT;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,eAAM,EAAC,GAAG,EAAE;gBACtC,GAAG,KAAK;gBACR,QAAQ;gBACR,MAAM,EAAE,6BAAsB;gBAC9B,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;gBAC3C,KAAK;aACN,CAAC,CAAA;YACF,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;SACvC;QACD,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AAvBD,sCAuBC"}

package/dist/MultiXYPlotRenderer/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,66 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/dist/QuantitativeTrack/configSchema.d.ts CHANGED Viewed

@@ -1,3 +1,75 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    name: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    assemblyNames: {
+        description: string;
+        type: string;
+        defaultValue: string[];
+    };
+    description: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    category: {
+        description: string;
+        type: string;
+        defaultValue: never[];
+    };
+    metadata: {
+        type: string;
+        description: string;
+        defaultValue: {};
+    };
+    adapter: import("mobx-state-tree").IAnyModelType;
+    textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        indexingAttributes: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        indexingFeatureTypesToExclude: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        textSearchAdapter: import("mobx-state-tree").IAnyModelType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        feature: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        subfeatures: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        depth: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        config: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        hideUris: {
+            type: string;
+            defaultValue: boolean;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
 export default configSchemaFactory;

package/dist/Tooltip.d.ts CHANGED Viewed

@@ -15,6 +15,6 @@ declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, cl
     offsetMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents: TooltipContentsComponent;
-}): JSX.Element | null;
+}): React.JSX.Element | null;
 declare const _default: typeof Tooltip;
 export default _default;