@jbrowse/plugin-wiggle 2.4.2 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +2 -2
- package/dist/BigWigAdapter/BigWigAdapter.js +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/dist/BigWigAdapter/configSchema.d.ts +20 -1
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -2
- package/dist/DensityRenderer/configSchema.d.ts +33 -1
- package/dist/LinePlotRenderer/configSchema.d.ts +44 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
- package/dist/LinearWiggleDisplay/index.js +27 -4
- package/dist/LinearWiggleDisplay/index.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/configSchema.d.ts +81 -1
- package/dist/LinearWiggleDisplay/models/configSchema.js +6 -67
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/model.d.ts +172 -320
- package/dist/LinearWiggleDisplay/models/model.js +18 -450
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js +21 -0
- package/dist/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/dist/MultiDensityRenderer/configSchema.d.ts +33 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/dist/MultiLineRenderer/configSchema.d.ts +51 -1
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -2
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +37 -38
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -3
- package/dist/MultiLinearWiggleDisplay/index.js +25 -2
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +87 -1
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -66
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +288 -153
- package/dist/MultiLinearWiggleDisplay/models/model.js +334 -523
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +20 -0
- package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +73 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/dist/MultiRowLineRenderer/configSchema.d.ts +51 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/dist/MultiWiggleAdapter/configSchema.d.ts +18 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -2
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/dist/MultiWiggleRendering.d.ts +2 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +65 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +73 -1
- package/dist/Tooltip.d.ts +1 -1
- package/dist/WiggleBaseRenderer.d.ts +1 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
- package/dist/WiggleRPC/MultiWiggleGetSources.js +51 -0
- package/dist/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +37 -0
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +54 -0
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
- package/dist/WiggleRPC/rpcMethods.d.ts +3 -47
- package/dist/WiggleRPC/rpcMethods.js +16 -117
- package/dist/WiggleRPC/rpcMethods.js.map +1 -1
- package/dist/WiggleRendering.d.ts +2 -2
- package/dist/XYPlotRenderer/configSchema.d.ts +65 -1
- package/dist/configSchema.d.ts +51 -1
- package/dist/index.d.ts +329 -180
- package/dist/index.js +2 -2
- package/dist/index.js.map +1 -1
- package/dist/shared/SetMinMaxDialog.d.ts +2 -2
- package/dist/shared/YScaleBar.d.ts +4 -3
- package/dist/shared/YScaleBar.js +1 -1
- package/dist/shared/YScaleBar.js.map +1 -1
- package/dist/shared/configShared.d.ts +85 -0
- package/dist/shared/configShared.js +84 -0
- package/dist/shared/configShared.js.map +1 -0
- package/dist/shared/modelShared.d.ts +576 -0
- package/dist/shared/modelShared.js +480 -0
- package/dist/shared/modelShared.js.map +1 -0
- package/dist/util.d.ts +9 -9
- package/dist/util.js +13 -22
- package/dist/util.js.map +1 -1
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +2 -2
- package/esm/BigWigAdapter/BigWigAdapter.js +6 -4
- package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
- package/esm/BigWigAdapter/configSchema.d.ts +20 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -2
- package/esm/DensityRenderer/configSchema.d.ts +33 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +44 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
- package/esm/LinearWiggleDisplay/index.js +2 -2
- package/esm/LinearWiggleDisplay/index.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +81 -1
- package/esm/LinearWiggleDisplay/models/configSchema.js +3 -67
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/model.d.ts +172 -320
- package/esm/LinearWiggleDisplay/models/model.js +22 -454
- package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js +14 -0
- package/esm/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
- package/esm/MultiDensityRenderer/configSchema.d.ts +33 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
- package/esm/MultiLineRenderer/configSchema.d.ts +51 -1
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +37 -38
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -3
- package/esm/MultiLinearWiggleDisplay/index.js +2 -2
- package/esm/MultiLinearWiggleDisplay/index.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +87 -1
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -66
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +288 -153
- package/esm/MultiLinearWiggleDisplay/models/model.js +336 -527
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +13 -0
- package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +73 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
- package/esm/MultiRowLineRenderer/configSchema.d.ts +51 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +3 -2
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
- package/esm/MultiWiggleAdapter/configSchema.d.ts +18 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -2
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
- package/esm/MultiWiggleRendering.d.ts +2 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -1
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +65 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +73 -1
- package/esm/Tooltip.d.ts +1 -1
- package/esm/WiggleBaseRenderer.d.ts +1 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
- package/esm/WiggleRPC/MultiWiggleGetSources.js +44 -0
- package/esm/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +30 -0
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +47 -0
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
- package/esm/WiggleRPC/rpcMethods.d.ts +3 -47
- package/esm/WiggleRPC/rpcMethods.js +3 -111
- package/esm/WiggleRPC/rpcMethods.js.map +1 -1
- package/esm/WiggleRendering.d.ts +2 -2
- package/esm/XYPlotRenderer/configSchema.d.ts +65 -1
- package/esm/configSchema.d.ts +51 -1
- package/esm/index.d.ts +329 -180
- package/esm/index.js +3 -3
- package/esm/index.js.map +1 -1
- package/esm/shared/SetMinMaxDialog.d.ts +2 -2
- package/esm/shared/YScaleBar.d.ts +4 -3
- package/esm/shared/YScaleBar.js +1 -1
- package/esm/shared/YScaleBar.js.map +1 -1
- package/esm/shared/configShared.d.ts +85 -0
- package/esm/shared/configShared.js +81 -0
- package/esm/shared/configShared.js.map +1 -0
- package/esm/shared/modelShared.d.ts +576 -0
- package/esm/shared/modelShared.js +454 -0
- package/esm/shared/modelShared.js.map +1 -0
- package/esm/util.d.ts +9 -9
- package/esm/util.js +10 -18
- package/esm/util.js.map +1 -1
- package/package.json +4 -4
- package/src/BigWigAdapter/BigWigAdapter.test.ts +8 -3
- package/src/BigWigAdapter/BigWigAdapter.ts +8 -7
- package/src/LinearWiggleDisplay/index.ts +2 -2
- package/src/LinearWiggleDisplay/models/configSchema.ts +4 -73
- package/src/LinearWiggleDisplay/models/model.tsx +25 -524
- package/src/LinearWiggleDisplay/models/renderSvg.tsx +29 -0
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +1 -2
- package/src/MultiLineRenderer/MultiLineRenderer.ts +1 -2
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +54 -51
- package/src/MultiLinearWiggleDisplay/index.ts +2 -2
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +4 -72
- package/src/MultiLinearWiggleDisplay/models/model.tsx +134 -389
- package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +26 -0
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +1 -2
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +1 -2
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +1 -1
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +1 -1
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +2 -2
- package/src/WiggleRPC/MultiWiggleGetSources.ts +68 -0
- package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +44 -0
- package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +73 -0
- package/src/WiggleRPC/rpcMethods.ts +3 -170
- package/src/index.ts +4 -4
- package/src/shared/YScaleBar.tsx +4 -2
- package/src/shared/configShared.ts +90 -0
- package/src/shared/modelShared.ts +510 -0
- package/src/util.ts +24 -26
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import React from 'react';
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import { Feature } from '@jbrowse/core/util';
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import { Instance } from 'mobx-state-tree';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
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/**
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* #stateModel LinearWiggleDisplay
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*
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* extends `SharedWiggleMixin`
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*/
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declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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renderInProgress: AbortController | undefined; /**
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features: Map<string, Feature> | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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}) => any;
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renderProps: any;
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} & {
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setLoading(abortController: AbortController): void;
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setRendered(props: {
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features: Map<string, Feature>;
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features: Map<string, import("@jbrowse/core/util").Feature>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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maxFeatureScreenDensity: {
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height: {
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mouseover: {
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
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} & {
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} & {
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featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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currStatsBpPerPx: number;
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} & {
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afterAttach(): void;
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} & {
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setCurrStatsBpPerPx(n: number): void;
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setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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setFeatureDensityStatsP(arg: any): void;
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setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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clearFeatureDensityStats(): void;
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readonly regionTooLargeReason: string;
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|
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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|
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
|
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|
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featureIdUnderMouse: string | undefined;
|
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|
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contextMenuFeature: Feature | undefined;
|
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|
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estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
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|
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|
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|
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readonly height: number;
|
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readonly blockType: "dynamicBlocks" | "staticBlocks";
|
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
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|
|
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|
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|
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|
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
|
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|
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readonly featureUnderMouse: Feature | undefined;
|
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|
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
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|
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
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|
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|
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
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|
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|
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|
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readonly currentFeatureScreenDensity: number;
|
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|
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readonly maxFeatureScreenDensity: any;
|
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|
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readonly estimatedStatsReady: boolean;
|
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|
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readonly maxAllowableBytes: number;
|
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|
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|
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setMessage(message: string): void;
|
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} & {
|
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afterAttach(): void;
|
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|
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estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
|
|
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deleteBlock(key: string): void;
|
|
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|
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selectFeature(feature: Feature): void;
|
|
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|
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
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|
clearFeatureSelection(): void;
|
|
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|
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setFeatureIdUnderMouse(feature
|
|
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|
-
|
|
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|
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* #getter
|
|
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|
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*/
|
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|
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reload(): void;
|
|
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|
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setContextMenuFeature(feature?: Feature | undefined): void;
|
|
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|
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} & {
|
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|
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readonly regionTooLarge: boolean;
|
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|
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readonly regionTooLargeReason: string;
|
|
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|
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setFeatureIdUnderMouse(feature?: string | undefined): void;
|
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|
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
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} & {
|
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|
reload(): Promise<void>;
|
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|
} & {
|
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|
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afterAttach(): void;
|
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|
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} & {
|
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|
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
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|
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
|
|
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238
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
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|
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
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|
renderProps(): any;
|
|
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|
} & {
|
|
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|
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renderSvg(opts:
|
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|
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|
|
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|
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theme: import("@mui/material").ThemeOptions;
|
|
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|
-
}): Promise<JSX.Element>;
|
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|
+
renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
|
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|
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afterAttach(): void;
|
|
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244
|
} & {
|
|
262
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|
message: string | undefined;
|
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|
stats: {
|
|
@@ -266,143 +249,46 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
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|
} | undefined;
|
|
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250
|
statsFetchInProgress: AbortController | undefined;
|
|
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|
} & {
|
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|
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|
|
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|
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* #action
|
|
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|
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*/
|
|
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|
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updateStats(stats: {
|
|
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|
+
updateQuantitativeStats(stats: {
|
|
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253
|
scoreMin: number;
|
|
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254
|
scoreMax: number;
|
|
275
255
|
}): void;
|
|
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|
-
|
|
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|
-
|
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|
-
|
|
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|
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setColor(color?: string): void;
|
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|
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/**
|
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|
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* #action
|
|
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|
-
*/
|
|
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|
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setPosColor(color?: string): void;
|
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|
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/**
|
|
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|
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* #action
|
|
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|
-
*/
|
|
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|
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setNegColor(color?: string): void;
|
|
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|
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/**
|
|
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|
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* #action
|
|
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|
-
*/
|
|
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|
+
setColor(color?: string | undefined): void;
|
|
257
|
+
setPosColor(color?: string | undefined): void;
|
|
258
|
+
setNegColor(color?: string | undefined): void;
|
|
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259
|
setLoading(aborter: AbortController): void;
|
|
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|
-
|
|
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|
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* #action
|
|
294
|
-
* this overrides the BaseLinearDisplayModel to avoid popping up a
|
|
295
|
-
* feature detail display, but still sets the feature selection on the
|
|
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|
-
* model so listeners can detect a click
|
|
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|
-
*/
|
|
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|
-
selectFeature(feature: Feature): void;
|
|
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|
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/**
|
|
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|
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* #action
|
|
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|
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*/
|
|
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|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
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261
|
setResolution(res: number): void;
|
|
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|
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/**
|
|
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|
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* #action
|
|
305
|
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*/
|
|
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262
|
setFill(fill: number): void;
|
|
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|
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/**
|
|
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|
-
* #action
|
|
309
|
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*/
|
|
310
263
|
toggleLogScale(): void;
|
|
311
|
-
|
|
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|
-
* #action
|
|
313
|
-
*/
|
|
314
|
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setScaleType(scale?: string): void;
|
|
315
|
-
/**
|
|
316
|
-
* #action
|
|
317
|
-
*/
|
|
264
|
+
setScaleType(scale?: string | undefined): void;
|
|
318
265
|
setSummaryScoreMode(val: string): void;
|
|
319
|
-
/**
|
|
320
|
-
* #action
|
|
321
|
-
*/
|
|
322
266
|
setAutoscale(val: string): void;
|
|
323
|
-
|
|
324
|
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* #action
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scoreTrackMenuItems(): ({
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} | {
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})[];
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} & {
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reload(): Promise<void>;
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} & {
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*/
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readonly
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readonly TooltipComponent: React.FC<{}>;
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*/
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readonly
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readonly rendererTypeName: string;
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} & {
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format: (d: import("d3-scale").NumberValue) => string;
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position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
|
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} | undefined;
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/**
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* #getter
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|
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*/
|
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|
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readonly adapterCapabilities: string[];
|
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/**
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* #method
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@@ -447,11 +354,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
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/**
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|
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*/
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readonly
|
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|
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/**
|
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|
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* #getter
|
|
453
|
-
*/
|
|
454
|
-
readonly hasGlobalStats: boolean;
|
|
357
|
+
readonly needsScalebar: boolean;
|
|
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|
/**
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|
* #getter
|
|
457
360
|
*/
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|
@@ -461,6 +364,32 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
461
364
|
* #method
|
|
462
365
|
*/
|
|
463
366
|
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
367
|
+
label: string;
|
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+
subMenu: ({
|
|
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|
+
label: string;
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|
+
subMenu: {
|
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|
+
label: string;
|
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372
|
+
onClick: () => void;
|
|
373
|
+
}[];
|
|
374
|
+
onClick?: undefined;
|
|
375
|
+
} | {
|
|
376
|
+
label: string;
|
|
377
|
+
subMenu: {
|
|
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|
+
label: string;
|
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|
+
type: string;
|
|
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|
+
checked: boolean;
|
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381
|
+
onClick: () => void;
|
|
382
|
+
}[];
|
|
383
|
+
onClick?: undefined;
|
|
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|
+
} | {
|
|
385
|
+
label: string;
|
|
386
|
+
onClick: () => void;
|
|
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|
+
subMenu?: undefined;
|
|
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|
+
})[];
|
|
389
|
+
type?: undefined;
|
|
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|
+
checked?: undefined;
|
|
391
|
+
onClick?: undefined;
|
|
392
|
+
} | {
|
|
464
393
|
label: string;
|
|
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394
|
subMenu: {
|
|
466
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|
label: string;
|
|
@@ -474,94 +403,17 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
|
|
|
474
403
|
} | {
|
|
475
404
|
type: string;
|
|
476
405
|
label: string;
|
|
477
|
-
checked:
|
|
406
|
+
checked: boolean;
|
|
478
407
|
onClick: () => void;
|
|
479
408
|
subMenu?: undefined;
|
|
480
409
|
})[];
|
|
481
410
|
} & {
|
|
482
|
-
/**
|
|
483
|
-
* #action
|
|
484
|
-
* re-runs stats and refresh whole display on reload
|
|
485
|
-
*/
|
|
486
|
-
reload(): Promise<void>;
|
|
487
411
|
afterAttach(): void;
|
|
488
412
|
/**
|
|
489
413
|
* #action
|
|
490
414
|
*/
|
|
491
|
-
renderSvg(opts:
|
|
492
|
-
|
|
493
|
-
theme: import("@mui/material").ThemeOptions;
|
|
494
|
-
}): Promise<JSX.Element>;
|
|
495
|
-
}, {
|
|
496
|
-
type: string;
|
|
497
|
-
} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
498
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
499
|
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type: import("mobx-state-tree").ISimpleType<string>;
|
|
500
|
-
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
501
|
-
} & {
|
|
502
|
-
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
503
|
-
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
504
|
-
key: import("mobx-state-tree").ISimpleType<string>;
|
|
505
|
-
region: import("mobx-state-tree").IModelType<{
|
|
506
|
-
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
507
|
-
start: import("mobx-state-tree").ISimpleType<number>;
|
|
508
|
-
end: import("mobx-state-tree").ISimpleType<number>;
|
|
509
|
-
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
|
|
510
|
-
* #property
|
|
511
|
-
*/
|
|
512
|
-
} & {
|
|
513
|
-
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
514
|
-
}, {
|
|
515
|
-
setRefName(newRefName: string): void;
|
|
516
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
517
|
-
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
518
|
-
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
519
|
-
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
520
|
-
}, {
|
|
521
|
-
renderInProgress: AbortController | undefined;
|
|
522
|
-
filled: boolean;
|
|
523
|
-
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
|
|
524
|
-
features: Map<string, Feature> | undefined;
|
|
525
|
-
layout: any;
|
|
526
|
-
status: string;
|
|
527
|
-
error: unknown;
|
|
528
|
-
message: string | undefined;
|
|
529
|
-
maxHeightReached: boolean;
|
|
530
|
-
ReactComponent: ({ model, }: {
|
|
531
|
-
model: any;
|
|
532
|
-
}) => any;
|
|
533
|
-
renderProps: any;
|
|
534
|
-
} & {
|
|
535
|
-
doReload(): void; /**
|
|
536
|
-
* #property
|
|
537
|
-
*/
|
|
538
|
-
afterAttach(): void;
|
|
539
|
-
setStatus(message: string): void;
|
|
540
|
-
setLoading(abortController: AbortController): void;
|
|
541
|
-
setMessage(messageText: string): void;
|
|
542
|
-
setRendered(props: {
|
|
543
|
-
reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
|
|
544
|
-
features: Map<string, Feature>;
|
|
545
|
-
layout: any;
|
|
546
|
-
maxHeightReached: boolean;
|
|
547
|
-
renderProps: any;
|
|
548
|
-
} | undefined): void;
|
|
549
|
-
setError(error: unknown): void;
|
|
550
|
-
reload(): void;
|
|
551
|
-
beforeDestroy(): void;
|
|
552
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
|
|
553
|
-
* #property
|
|
554
|
-
*/
|
|
555
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
556
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
557
|
-
}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
|
|
558
|
-
type: string;
|
|
559
|
-
id: string;
|
|
560
|
-
rpcDriverName: string | undefined;
|
|
561
|
-
heightPreConfig: number | undefined;
|
|
562
|
-
userBpPerPxLimit: number | undefined;
|
|
563
|
-
userByteSizeLimit: number | undefined;
|
|
564
|
-
} & import("mobx-state-tree")._NotCustomized>;
|
|
415
|
+
renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
|
|
416
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
565
417
|
export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
|
|
566
418
|
export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
|
|
567
419
|
export default stateModelFactory;
|