@jbrowse/plugin-wiggle 2.4.2 → 2.6.1

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Files changed (220) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  2. package/dist/BigWigAdapter/BigWigAdapter.js +4 -3
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.d.ts +20 -1
  5. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -2
  6. package/dist/DensityRenderer/configSchema.d.ts +33 -1
  7. package/dist/LinePlotRenderer/configSchema.d.ts +44 -1
  8. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
  9. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  10. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
  11. package/dist/LinearWiggleDisplay/index.js +27 -4
  12. package/dist/LinearWiggleDisplay/index.js.map +1 -1
  13. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +81 -1
  14. package/dist/LinearWiggleDisplay/models/configSchema.js +6 -67
  15. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  16. package/dist/LinearWiggleDisplay/models/model.d.ts +172 -320
  17. package/dist/LinearWiggleDisplay/models/model.js +18 -450
  18. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  19. package/dist/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  20. package/dist/LinearWiggleDisplay/models/renderSvg.js +21 -0
  21. package/dist/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
  22. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
  23. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  24. package/dist/MultiDensityRenderer/configSchema.d.ts +33 -1
  25. package/dist/MultiLineRenderer/MultiLineRenderer.js +1 -1
  26. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  27. package/dist/MultiLineRenderer/configSchema.d.ts +51 -1
  28. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -2
  29. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
  30. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +37 -38
  31. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  32. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  33. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -3
  34. package/dist/MultiLinearWiggleDisplay/index.js +25 -2
  35. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -1
  36. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +87 -1
  37. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +6 -66
  38. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  39. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +288 -153
  40. package/dist/MultiLinearWiggleDisplay/models/model.js +334 -523
  41. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  42. package/dist/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  43. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js +20 -0
  44. package/dist/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
  45. package/dist/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  46. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
  47. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  48. package/dist/MultiRowLineRenderer/configSchema.d.ts +51 -1
  49. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
  50. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  51. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  52. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  53. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
  54. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  55. package/dist/MultiWiggleAdapter/configSchema.d.ts +18 -1
  56. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -2
  57. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
  58. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  59. package/dist/MultiWiggleRendering.d.ts +2 -2
  60. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +3 -2
  61. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  62. package/dist/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  63. package/dist/QuantitativeTrack/configSchema.d.ts +73 -1
  64. package/dist/Tooltip.d.ts +1 -1
  65. package/dist/WiggleBaseRenderer.d.ts +1 -1
  66. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  67. package/dist/WiggleRPC/MultiWiggleGetSources.js +51 -0
  68. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  69. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  70. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +37 -0
  71. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  72. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  73. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +54 -0
  74. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  75. package/dist/WiggleRPC/rpcMethods.d.ts +3 -47
  76. package/dist/WiggleRPC/rpcMethods.js +16 -117
  77. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  78. package/dist/WiggleRendering.d.ts +2 -2
  79. package/dist/XYPlotRenderer/configSchema.d.ts +65 -1
  80. package/dist/configSchema.d.ts +51 -1
  81. package/dist/index.d.ts +329 -180
  82. package/dist/index.js +2 -2
  83. package/dist/index.js.map +1 -1
  84. package/dist/shared/SetMinMaxDialog.d.ts +2 -2
  85. package/dist/shared/YScaleBar.d.ts +4 -3
  86. package/dist/shared/YScaleBar.js +1 -1
  87. package/dist/shared/YScaleBar.js.map +1 -1
  88. package/dist/shared/configShared.d.ts +85 -0
  89. package/dist/shared/configShared.js +84 -0
  90. package/dist/shared/configShared.js.map +1 -0
  91. package/dist/shared/modelShared.d.ts +576 -0
  92. package/dist/shared/modelShared.js +480 -0
  93. package/dist/shared/modelShared.js.map +1 -0
  94. package/dist/util.d.ts +9 -9
  95. package/dist/util.js +13 -22
  96. package/dist/util.js.map +1 -1
  97. package/esm/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  98. package/esm/BigWigAdapter/BigWigAdapter.js +6 -4
  99. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  100. package/esm/BigWigAdapter/configSchema.d.ts +20 -1
  101. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -2
  102. package/esm/DensityRenderer/configSchema.d.ts +33 -1
  103. package/esm/LinePlotRenderer/configSchema.d.ts +44 -1
  104. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
  105. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  106. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -2
  107. package/esm/LinearWiggleDisplay/index.js +2 -2
  108. package/esm/LinearWiggleDisplay/index.js.map +1 -1
  109. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +81 -1
  110. package/esm/LinearWiggleDisplay/models/configSchema.js +3 -67
  111. package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -1
  112. package/esm/LinearWiggleDisplay/models/model.d.ts +172 -320
  113. package/esm/LinearWiggleDisplay/models/model.js +22 -454
  114. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  115. package/esm/LinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  116. package/esm/LinearWiggleDisplay/models/renderSvg.js +14 -0
  117. package/esm/LinearWiggleDisplay/models/renderSvg.js.map +1 -0
  118. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +1 -1
  119. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -1
  120. package/esm/MultiDensityRenderer/configSchema.d.ts +33 -1
  121. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -1
  122. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -1
  123. package/esm/MultiLineRenderer/configSchema.d.ts +51 -1
  124. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +2 -2
  125. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -2
  126. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +37 -38
  127. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  128. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +1 -1
  129. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +3 -3
  130. package/esm/MultiLinearWiggleDisplay/index.js +2 -2
  131. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -1
  132. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +87 -1
  133. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +3 -66
  134. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -1
  135. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +288 -153
  136. package/esm/MultiLinearWiggleDisplay/models/model.js +336 -527
  137. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  138. package/esm/MultiLinearWiggleDisplay/models/renderSvg.d.ts +4 -0
  139. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js +13 -0
  140. package/esm/MultiLinearWiggleDisplay/models/renderSvg.js.map +1 -0
  141. package/esm/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  142. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -1
  143. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -1
  144. package/esm/MultiRowLineRenderer/configSchema.d.ts +51 -1
  145. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -1
  146. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -1
  147. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  148. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  149. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +3 -2
  150. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  151. package/esm/MultiWiggleAdapter/configSchema.d.ts +18 -1
  152. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +2 -2
  153. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +1 -1
  154. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -1
  155. package/esm/MultiWiggleRendering.d.ts +2 -2
  156. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -1
  157. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -1
  158. package/esm/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  159. package/esm/QuantitativeTrack/configSchema.d.ts +73 -1
  160. package/esm/Tooltip.d.ts +1 -1
  161. package/esm/WiggleBaseRenderer.d.ts +1 -1
  162. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  163. package/esm/WiggleRPC/MultiWiggleGetSources.js +44 -0
  164. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  165. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  166. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +30 -0
  167. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  168. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  169. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +47 -0
  170. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  171. package/esm/WiggleRPC/rpcMethods.d.ts +3 -47
  172. package/esm/WiggleRPC/rpcMethods.js +3 -111
  173. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  174. package/esm/WiggleRendering.d.ts +2 -2
  175. package/esm/XYPlotRenderer/configSchema.d.ts +65 -1
  176. package/esm/configSchema.d.ts +51 -1
  177. package/esm/index.d.ts +329 -180
  178. package/esm/index.js +3 -3
  179. package/esm/index.js.map +1 -1
  180. package/esm/shared/SetMinMaxDialog.d.ts +2 -2
  181. package/esm/shared/YScaleBar.d.ts +4 -3
  182. package/esm/shared/YScaleBar.js +1 -1
  183. package/esm/shared/YScaleBar.js.map +1 -1
  184. package/esm/shared/configShared.d.ts +85 -0
  185. package/esm/shared/configShared.js +81 -0
  186. package/esm/shared/configShared.js.map +1 -0
  187. package/esm/shared/modelShared.d.ts +576 -0
  188. package/esm/shared/modelShared.js +454 -0
  189. package/esm/shared/modelShared.js.map +1 -0
  190. package/esm/util.d.ts +9 -9
  191. package/esm/util.js +10 -18
  192. package/esm/util.js.map +1 -1
  193. package/package.json +4 -4
  194. package/src/BigWigAdapter/BigWigAdapter.test.ts +8 -3
  195. package/src/BigWigAdapter/BigWigAdapter.ts +8 -7
  196. package/src/LinearWiggleDisplay/index.ts +2 -2
  197. package/src/LinearWiggleDisplay/models/configSchema.ts +4 -73
  198. package/src/LinearWiggleDisplay/models/model.tsx +25 -524
  199. package/src/LinearWiggleDisplay/models/renderSvg.tsx +29 -0
  200. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +1 -2
  201. package/src/MultiLineRenderer/MultiLineRenderer.ts +1 -2
  202. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +54 -51
  203. package/src/MultiLinearWiggleDisplay/index.ts +2 -2
  204. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +4 -72
  205. package/src/MultiLinearWiggleDisplay/models/model.tsx +134 -389
  206. package/src/MultiLinearWiggleDisplay/models/renderSvg.tsx +26 -0
  207. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +1 -2
  208. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +1 -2
  209. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +1 -1
  210. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +1 -1
  211. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +2 -2
  212. package/src/WiggleRPC/MultiWiggleGetSources.ts +68 -0
  213. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +44 -0
  214. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +73 -0
  215. package/src/WiggleRPC/rpcMethods.ts +3 -170
  216. package/src/index.ts +4 -4
  217. package/src/shared/YScaleBar.tsx +4 -2
  218. package/src/shared/configShared.ts +90 -0
  219. package/src/shared/modelShared.ts +510 -0
  220. package/src/util.ts +24 -26
@@ -1,2 +1,34 @@
1
- declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ color: {
3
+ type: string;
4
+ description: string;
5
+ defaultValue: string;
6
+ };
7
+ posColor: {
8
+ type: string;
9
+ description: string;
10
+ defaultValue: string;
11
+ };
12
+ negColor: {
13
+ type: string;
14
+ description: string;
15
+ defaultValue: string;
16
+ };
17
+ clipColor: {
18
+ type: string;
19
+ description: string;
20
+ defaultValue: string;
21
+ };
22
+ bicolorPivot: {
23
+ type: string;
24
+ model: import("mobx-state-tree").ISimpleType<string>;
25
+ description: string;
26
+ defaultValue: string;
27
+ };
28
+ bicolorPivotValue: {
29
+ type: string;
30
+ defaultValue: number;
31
+ description: string;
32
+ };
33
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
2
34
  export default configSchema;
@@ -3,8 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ const util_1 = require("@jbrowse/core/util");
6
7
  const drawxy_1 = require("../drawxy");
7
- const util_1 = require("../util");
8
8
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
9
9
  class MultiLineRenderer extends WiggleBaseRenderer_1.default {
10
10
  // @ts-expect-error
@@ -1 +1 @@
1
- {"version":3,"file":"MultiLineRenderer.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/MultiLineRenderer.ts"],"names":[],"mappings":";;;;;AACA,sCAAoC;AACpC,kCAAiC;AAEjC,+EAE8B;AAE9B,MAAqB,iBAAkB,SAAQ,4BAAkB;IAC/D,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACnC,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ;gBACR,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;QACxC,CAAC,CAAC,CAAA;QACF,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AApBD,oCAoBC"}
1
+ {"version":3,"file":"MultiLineRenderer.js","sourceRoot":"","sources":["../../src/MultiLineRenderer/MultiLineRenderer.ts"],"names":[],"mappings":";;;;;AAAA,6CAAqD;AACrD,sCAAoC;AAEpC,+EAE8B;AAE9B,MAAqB,iBAAkB,SAAQ,4BAAkB;IAC/D,mBAAmB;IACnB,KAAK,CAAC,IAAI,CAAC,GAA6B,EAAE,KAAgB;QACxD,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;QACnC,MAAM,MAAM,GAAG,IAAA,cAAO,EAAC,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QACpE,IAAI,KAAK,GAAG,EAAe,CAAA;QAC3B,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;YACvB,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YACpC,IAAI,CAAC,QAAQ,EAAE;gBACb,OAAM;aACP;YACD,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAQ,EAAC,GAAG,EAAE;gBACxC,GAAG,KAAK;gBACR,QAAQ;gBACR,aAAa,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM;aAC5C,CAAC,CAAA;YACF,KAAK,GAAG,CAAC,GAAG,KAAK,EAAE,GAAG,eAAe,CAAC,CAAA;QACxC,CAAC,CAAC,CAAA;QACF,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,CAAA;IACnC,CAAC;CACF;AApBD,oCAoBC"}
@@ -1,2 +1,52 @@
1
- declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ /**
3
+ * #slot
4
+ */
5
+ displayCrossHatches: {
6
+ type: string;
7
+ description: string;
8
+ defaultValue: boolean;
9
+ };
10
+ /**
11
+ * #slot
12
+ */
13
+ summaryScoreMode: {
14
+ type: string;
15
+ model: import("mobx-state-tree").ISimpleType<string>;
16
+ description: string;
17
+ defaultValue: string;
18
+ };
19
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
20
+ color: {
21
+ type: string;
22
+ description: string;
23
+ defaultValue: string;
24
+ };
25
+ posColor: {
26
+ type: string;
27
+ description: string;
28
+ defaultValue: string;
29
+ };
30
+ negColor: {
31
+ type: string;
32
+ description: string;
33
+ defaultValue: string;
34
+ };
35
+ clipColor: {
36
+ type: string;
37
+ description: string;
38
+ defaultValue: string;
39
+ };
40
+ bicolorPivot: {
41
+ type: string;
42
+ model: import("mobx-state-tree").ISimpleType<string>;
43
+ description: string;
44
+ defaultValue: string;
45
+ };
46
+ bicolorPivotValue: {
47
+ type: string;
48
+ defaultValue: number;
49
+ description: string;
50
+ };
51
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
2
52
  export default configSchema;
@@ -1,7 +1,7 @@
1
- /// <reference types="react" />
1
+ import React from 'react';
2
2
  import { DialogProps } from '@mui/material';
3
3
  declare function DraggableDialog(props: DialogProps & {
4
4
  title: string;
5
- }): JSX.Element;
5
+ }): React.JSX.Element;
6
6
  declare const _default: typeof DraggableDialog;
7
7
  export default _default;
@@ -1,4 +1,4 @@
1
- /// <reference types="react" />
1
+ import React from 'react';
2
2
  import { Source } from '../../util';
3
3
  export default function SetColorDialog({ model, handleClose, }: {
4
4
  model: {
@@ -7,4 +7,4 @@ export default function SetColorDialog({ model, handleClose, }: {
7
7
  clearLayout: () => void;
8
8
  };
9
9
  handleClose: () => void;
10
- }): JSX.Element;
10
+ }): React.JSX.Element;
@@ -35,13 +35,13 @@ const clone_1 = __importDefault(require("clone"));
35
35
  // locals
36
36
  const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
37
37
  const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
38
- const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
39
38
  const util_2 = require("./util");
40
39
  // icons
41
40
  const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
42
41
  const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
43
42
  const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
44
43
  const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
44
+ const UriLink_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/UriLink"));
45
45
  const useStyles = (0, mui_1.makeStyles)()({
46
46
  content: {
47
47
  minWidth: 800,
@@ -87,43 +87,11 @@ function SourcesGrid({ rows, onChange, showTips, }) {
87
87
  const [selected, setSelected] = (0, react_1.useState)([]);
88
88
  // @ts-expect-error
89
89
  const { name: _name, color: _color, baseUri: _baseUri, ...rest } = rows[0];
90
- // similar to BaseFeatureDetail data-grid for auto-measuring columns
91
- const columns = [
92
- {
93
- field: 'color',
94
- headerName: 'Color',
95
- renderCell: (params) => {
96
- const { value, id } = params;
97
- return (react_1.default.createElement(ColorPicker_1.default, { color: value || 'blue', onChange: c => {
98
- const elt = rows.find(f => f.name === id);
99
- if (elt) {
100
- elt.color = c;
101
- }
102
- onChange([...rows]);
103
- } }));
104
- },
105
- },
106
- {
107
- field: 'name',
108
- sortingOrder: [null],
109
- headerName: 'Name',
110
- width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
111
- },
112
- ...Object.keys(rest).map(val => ({
113
- field: val,
114
- sortingOrder: [null],
115
- renderCell: (params) => {
116
- const { value } = params;
117
- return (0, util_1.isUriLocation)(value) ? react_1.default.createElement(BaseFeatureDetail_1.UriLink, { value: value }) : (0, util_1.getStr)(value);
118
- },
119
- // @ts-expect-error
120
- width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
121
- })),
122
- ];
123
- // this helps keep track of the selection, even though it is not used
124
- // anywhere except inside the picker
125
90
  const [widgetColor, setWidgetColor] = (0, react_1.useState)('blue');
126
- const [currSort, setCurrSort] = (0, react_1.useState)({ idx: 0, field: null });
91
+ const [currSort, setCurrSort] = (0, react_1.useState)({
92
+ idx: 0,
93
+ field: null,
94
+ });
127
95
  return (react_1.default.createElement("div", null,
128
96
  react_1.default.createElement(material_1.Button, { disabled: !selected.length, onClick: event => setAnchorEl(event.currentTarget) }, "Change color of selected items"),
129
97
  react_1.default.createElement(material_1.Button, { onClick: () => onChange((0, util_2.moveUp)([...rows], selected)), disabled: !selected.length },
@@ -149,7 +117,38 @@ function SourcesGrid({ rows, onChange, showTips, }) {
149
117
  onChange([...rows]);
150
118
  }, onClose: () => setAnchorEl(null) }),
151
119
  react_1.default.createElement("div", { style: { height: 400, width: '100%' } },
152
- react_1.default.createElement(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableSelectionOnClick: true, onSelectionModelChange: arg => setSelected(arg), rows: rows, rowHeight: 25, headerHeight: 33, columns: columns, sortModel: [
120
+ react_1.default.createElement(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableRowSelectionOnClick: true, onRowSelectionModelChange: arg => setSelected(arg), rows: rows, rowHeight: 25, columnHeaderHeight: 33, columns: [
121
+ {
122
+ field: 'color',
123
+ headerName: 'Color',
124
+ renderCell: params => {
125
+ const { value, id } = params;
126
+ return (react_1.default.createElement(ColorPicker_1.default, { color: value || 'blue', onChange: c => {
127
+ const elt = rows.find(f => f.name === id);
128
+ if (elt) {
129
+ elt.color = c;
130
+ }
131
+ onChange([...rows]);
132
+ } }));
133
+ },
134
+ },
135
+ {
136
+ field: 'name',
137
+ sortingOrder: [null],
138
+ headerName: 'Name',
139
+ width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
140
+ },
141
+ ...Object.keys(rest).map(val => ({
142
+ field: val,
143
+ sortingOrder: [null],
144
+ renderCell: (params) => {
145
+ const { value } = params;
146
+ return (0, util_1.isUriLocation)(value) ? (react_1.default.createElement(UriLink_1.default, { value: value })) : ((0, util_1.getStr)(value));
147
+ },
148
+ // @ts-ignore
149
+ width: (0, util_1.measureGridWidth)(rows.map(r => r[val])),
150
+ })),
151
+ ], sortModel: [
153
152
  /* we control the sort as a controlled component using onSortModelChange */
154
153
  ], onSortModelChange: args => {
155
154
  const sort = args[0];
@@ -1 +1 @@
1
- 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+ 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@@ -20,6 +20,6 @@ declare const WiggleTooltip: (props: {
20
20
  clientMouseCoord: Coord;
21
21
  clientRect?: DOMRect;
22
22
  TooltipContents?: TooltipContentsComponent;
23
- }) => JSX.Element;
23
+ }) => React.JSX.Element;
24
24
  export default WiggleTooltip;
25
25
  export { default as Tooltip } from '../../Tooltip';
@@ -1,12 +1,12 @@
1
- /// <reference types="react" />
1
+ import React from 'react';
2
2
  import { WiggleDisplayModel } from '../models/model';
3
3
  export declare const StatBars: (props: {
4
4
  model: WiggleDisplayModel;
5
5
  orientation?: string;
6
6
  exportSVG?: boolean;
7
- }) => JSX.Element | null;
7
+ }) => React.JSX.Element | null;
8
8
  declare const _default: (props: {
9
9
  model: WiggleDisplayModel;
10
- }) => JSX.Element;
10
+ }) => React.JSX.Element;
11
11
  export default _default;
12
12
  export { default as YScaleBar } from '../../shared/YScaleBar';
@@ -1,4 +1,27 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
2
25
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
27
  };
@@ -6,7 +29,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
6
29
  const DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
7
30
  const configSchema_1 = __importDefault(require("./models/configSchema"));
8
31
  const model_1 = __importDefault(require("./models/model"));
9
- const WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
32
+ const react_1 = require("react");
10
33
  exports.default = (pluginManager) => {
11
34
  pluginManager.addDisplayType(() => {
12
35
  const configSchema = (0, configSchema_1.default)(pluginManager);
@@ -17,7 +40,7 @@ exports.default = (pluginManager) => {
17
40
  stateModel: (0, model_1.default)(pluginManager, configSchema),
18
41
  trackType: 'MultiQuantitativeTrack',
19
42
  viewType: 'LinearGenomeView',
20
- ReactComponent: WiggleDisplayComponent_1.default,
43
+ ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/WiggleDisplayComponent')))),
21
44
  });
22
45
  });
23
46
  };
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iGAAgE;AAEhE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAd,gCAAc;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,kGAAyE;AAEzE,yEAAuD;AACvD,2DAAyC;AACzC,iCAA4B;AAE5B,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QAChC,MAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,WAAW,EAAE,sBAAsB;YACnC,YAAY;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,EAAE,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,qCAAqC,GAAC,CAAC;SAC1E,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
@@ -1,2 +1,88 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
+ /**
4
+ * #slot
5
+ */
6
+ defaultRendering: {
7
+ type: string;
8
+ model: import("mobx-state-tree").ISimpleType<string>;
9
+ defaultValue: string;
10
+ };
11
+ /**
12
+ * #slot
13
+ */
14
+ renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
15
+ MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
16
+ MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
17
+ MultiRowXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
18
+ MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
19
+ MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
20
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
21
+ /**
22
+ * #slot
23
+ */
24
+ height: {
25
+ type: string;
26
+ defaultValue: number;
27
+ };
28
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
29
+ autoscale: {
30
+ type: string;
31
+ defaultValue: string;
32
+ model: import("mobx-state-tree").ISimpleType<string>;
33
+ description: string;
34
+ };
35
+ minimalTicks: {
36
+ type: string;
37
+ defaultValue: boolean;
38
+ description: string;
39
+ };
40
+ minScore: {
41
+ type: string;
42
+ defaultValue: number;
43
+ description: string;
44
+ };
45
+ maxScore: {
46
+ type: string;
47
+ description: string;
48
+ defaultValue: number;
49
+ };
50
+ numStdDev: {
51
+ type: string;
52
+ description: string;
53
+ defaultValue: number;
54
+ };
55
+ scaleType: {
56
+ type: string;
57
+ model: import("mobx-state-tree").ISimpleType<string>;
58
+ description: string;
59
+ defaultValue: string;
60
+ };
61
+ inverted: {
62
+ type: string;
63
+ description: string;
64
+ defaultValue: boolean;
65
+ };
66
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
67
+ maxFeatureScreenDensity: {
68
+ type: string;
69
+ description: string;
70
+ defaultValue: number;
71
+ };
72
+ fetchSizeLimit: {
73
+ type: string;
74
+ defaultValue: number;
75
+ description: string;
76
+ };
77
+ height: {
78
+ type: string;
79
+ defaultValue: number;
80
+ description: string;
81
+ };
82
+ mouseover: {
83
+ type: string;
84
+ description: string;
85
+ defaultValue: string;
86
+ contextVariable: string[];
87
+ };
88
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>, undefined>>;
@@ -1,8 +1,12 @@
1
1
  "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
2
5
  Object.defineProperty(exports, "__esModule", { value: true });
3
6
  const configuration_1 = require("@jbrowse/core/configuration");
4
- const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
5
7
  const mobx_state_tree_1 = require("mobx-state-tree");
8
+ // locals
9
+ const configShared_1 = __importDefault(require("../../shared/configShared"));
6
10
  /**
7
11
  * #config MultiLinearWiggleDisplay
8
12
  */
@@ -14,70 +18,6 @@ function WiggleConfigFactory(pluginManager) {
14
18
  const MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
15
19
  const MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
16
20
  return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
17
- /**
18
- * #slot
19
- */
20
- autoscale: {
21
- type: 'stringEnum',
22
- defaultValue: 'local',
23
- model: mobx_state_tree_1.types.enumeration('Autoscale type', [
24
- 'global',
25
- 'local',
26
- 'globalsd',
27
- 'localsd',
28
- 'zscore',
29
- ]),
30
- description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
31
- },
32
- /**
33
- * #slot
34
- */
35
- minimalTicks: {
36
- type: 'boolean',
37
- defaultValue: false,
38
- description: 'use the minimal amount of ticks',
39
- },
40
- /**
41
- * #slot
42
- */
43
- minScore: {
44
- type: 'number',
45
- defaultValue: Number.MIN_VALUE,
46
- description: 'minimum value for the y-scale',
47
- },
48
- /**
49
- * #slot
50
- */
51
- maxScore: {
52
- type: 'number',
53
- description: 'maximum value for the y-scale',
54
- defaultValue: Number.MAX_VALUE,
55
- },
56
- /**
57
- * #slot
58
- */
59
- numStdDev: {
60
- type: 'number',
61
- description: 'number of standard deviations to use for autoscale types globalsd or localsd',
62
- defaultValue: 3,
63
- },
64
- /**
65
- * #slot
66
- */
67
- scaleType: {
68
- type: 'stringEnum',
69
- model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
70
- description: 'The type of scale to use',
71
- defaultValue: 'linear',
72
- },
73
- /**
74
- * #slot
75
- */
76
- inverted: {
77
- type: 'boolean',
78
- description: 'draw upside down',
79
- defaultValue: false,
80
- },
81
21
  /**
82
22
  * #slot
83
23
  */
@@ -113,7 +53,7 @@ function WiggleConfigFactory(pluginManager) {
113
53
  /**
114
54
  * #baseConfiguration
115
55
  */
116
- baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema,
56
+ baseConfiguration: (0, configShared_1.default)(),
117
57
  explicitlyTyped: true,
118
58
  });
119
59
  }
@@ -1 +1 @@
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