@jbrowse/plugin-wiggle 2.4.2 → 2.6.1

package/esm/shared/modelShared.js

@@ -0,0 +1,454 @@
+import { ConfigurationReference, getConf, readConfObject, } from '@jbrowse/core/configuration';
+import { getEnv, getSession, isSelectionContainer, } from '@jbrowse/core/util';
+import { BaseLinearDisplay } from '@jbrowse/plugin-linear-genome-view';
+import { types } from 'mobx-state-tree';
+// locals
+import { getNiceDomain } from '../util';
+import { lazy } from 'react';
+// lazies
+const SetMinMaxDlg = lazy(() => import('./SetMinMaxDialog'));
+/**
+ * #stateModel SharedWiggleMixin
+ */
+export default function SharedWiggleMixin(configSchema) {
+    return types
+        .compose(BaseLinearDisplay, types.model({
+        /**
+         * #property
+         */
+        selectedRendering: types.optional(types.string, ''),
+        /**
+         * #property
+         */
+        resolution: types.optional(types.number, 1),
+        /**
+         * #property
+         */
+        fill: types.maybe(types.boolean),
+        /**
+         * #property
+         */
+        minSize: types.maybe(types.number),
+        /**
+         * #property
+         */
+        color: types.maybe(types.string),
+        /**
+         * #property
+         */
+        posColor: types.maybe(types.string),
+        /**
+         * #property
+         */
+        negColor: types.maybe(types.string),
+        /**
+         * #property
+         */
+        summaryScoreMode: types.maybe(types.string),
+        /**
+         * #property
+         */
+        rendererTypeNameState: types.maybe(types.string),
+        /**
+         * #property
+         */
+        scale: types.maybe(types.string),
+        /**
+         * #property
+         */
+        autoscale: types.maybe(types.string),
+        /**
+         * #property
+         */
+        displayCrossHatches: types.maybe(types.boolean),
+        /**
+         * #property
+         */
+        constraints: types.optional(types.model({
+            max: types.maybe(types.number),
+            min: types.maybe(types.number),
+        }), {}),
+        /**
+         * #property
+         */
+        configuration: ConfigurationReference(configSchema),
+    }))
+        .volatile(() => ({
+        message: undefined,
+        stats: undefined,
+        statsFetchInProgress: undefined,
+    }))
+        .actions(self => ({
+        /**
+         * #action
+         */
+        updateQuantitativeStats(stats) {
+            const { scoreMin, scoreMax } = stats;
+            const EPSILON = 0.000001;
+            if (!self.stats) {
+                self.stats = { scoreMin, scoreMax };
+            }
+            else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+                Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
+                self.stats = { scoreMin, scoreMax };
+            }
+        },
+        /**
+         * #action
+         */
+        setColor(color) {
+            self.color = color;
+        },
+        /**
+         * #action
+         */
+        setPosColor(color) {
+            self.posColor = color;
+        },
+        /**
+         * #action
+         */
+        setNegColor(color) {
+            self.negColor = color;
+        },
+        /**
+         * #action
+         */
+        setLoading(aborter) {
+            const { statsFetchInProgress: statsFetch } = self;
+            if (statsFetch !== undefined && !statsFetch.signal.aborted) {
+                statsFetch.abort();
+            }
+            self.statsFetchInProgress = aborter;
+        },
+        /**
+         * #action
+         * this overrides the BaseLinearDisplayModel to avoid popping up a
+         * feature detail display, but still sets the feature selection on the
+         * model so listeners can detect a click
+         */
+        selectFeature(feature) {
+            const session = getSession(self);
+            if (isSelectionContainer(session)) {
+                session.setSelection(feature);
+            }
+        },
+        /**
+         * #action
+         */
+        setResolution(res) {
+            self.resolution = res;
+        },
+        /**
+         * #action
+         */
+        setFill(fill) {
+            if (fill === 0) {
+                self.fill = true;
+                self.minSize = 0;
+            }
+            else if (fill === 1) {
+                self.fill = false;
+                self.minSize = 1;
+            }
+            else if (fill === 2) {
+                self.fill = false;
+                self.minSize = 2;
+            }
+        },
+        /**
+         * #action
+         */
+        toggleLogScale() {
+            self.scale = self.scale === 'log' ? 'linear' : 'log';
+        },
+        /**
+         * #action
+         */
+        setScaleType(scale) {
+            self.scale = scale;
+        },
+        /**
+         * #action
+         */
+        setSummaryScoreMode(val) {
+            self.summaryScoreMode = val;
+        },
+        /**
+         * #action
+         */
+        setAutoscale(val) {
+            self.autoscale = val;
+        },
+        /**
+         * #action
+         */
+        setMaxScore(val) {
+            self.constraints.max = val;
+        },
+        /**
+         * #action
+         */
+        setRendererType(val) {
+            self.rendererTypeNameState = val;
+        },
+        /**
+         * #action
+         */
+        setMinScore(val) {
+            self.constraints.min = val;
+        },
+        /**
+         * #action
+         */
+        toggleCrossHatches() {
+            self.displayCrossHatches = !self.displayCrossHatches;
+        },
+        /**
+         * #action
+         */
+        setCrossHatches(cross) {
+            self.displayCrossHatches = cross;
+        },
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get adapterTypeName() {
+            return self.adapterConfig.type;
+        },
+        /**
+         * #getter
+         */
+        get rendererTypeNameSimple() {
+            var _a;
+            return (_a = self.rendererTypeNameState) !== null && _a !== void 0 ? _a : getConf(self, 'defaultRendering');
+        },
+        /**
+         * #getter
+         * subclasses can define these, as snpcoverage track does
+         */
+        get filters() {
+            return undefined;
+        },
+        /**
+         * #getter
+         */
+        get scaleType() {
+            var _a;
+            return (_a = self.scale) !== null && _a !== void 0 ? _a : getConf(self, 'scaleType');
+        },
+        /**
+         * #getter
+         */
+        get maxScore() {
+            var _a;
+            return (_a = self.constraints.max) !== null && _a !== void 0 ? _a : getConf(self, 'maxScore');
+        },
+        /**
+         * #getter
+         */
+        get minScore() {
+            var _a;
+            return (_a = self.constraints.min) !== null && _a !== void 0 ? _a : getConf(self, 'minScore');
+        },
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get adapterCapabilities() {
+            const type = self.adapterTypeName;
+            const { pluginManager } = getEnv(self);
+            return pluginManager.getAdapterType(type).adapterCapabilities;
+        },
+        /**
+         * #getter
+         */
+        get rendererConfig() {
+            const { color, displayCrossHatches, fill, minSize, negColor, posColor, summaryScoreMode, scaleType, rendererTypeName, } = self;
+            const configBlob = getConf(self, ['renderers', rendererTypeName]) || {};
+            return self.rendererType.configSchema.create({
+                ...configBlob,
+                ...(scaleType ? { scaleType } : {}),
+                ...(fill !== undefined ? { filled: fill } : {}),
+                ...(displayCrossHatches !== undefined
+                    ? { displayCrossHatches }
+                    : {}),
+                ...(summaryScoreMode !== undefined ? { summaryScoreMode } : {}),
+                ...(color !== undefined ? { color } : {}),
+                ...(negColor !== undefined ? { negColor } : {}),
+                ...(posColor !== undefined ? { posColor } : {}),
+                ...(minSize !== undefined ? { minSize } : {}),
+            }, getEnv(self));
+        },
+        /**
+         * #getter
+         */
+        get autoscaleType() {
+            var _a;
+            return (_a = self.autoscale) !== null && _a !== void 0 ? _a : getConf(self, 'autoscale');
+        },
+    }))
+        .views(self => {
+        let oldDomain = [0, 0];
+        return {
+            /**
+             * #getter
+             */
+            get domain() {
+                const { stats, scaleType, minScore, maxScore } = self;
+                if (!stats) {
+                    return undefined;
+                }
+                const ret = getNiceDomain({
+                    domain: [stats.scoreMin, stats.scoreMax],
+                    bounds: [minScore, maxScore],
+                    scaleType,
+                });
+                // avoid weird scalebar if log value and empty region displayed
+                if (scaleType === 'log' && ret[1] === Number.MIN_VALUE) {
+                    return [0, Number.MIN_VALUE];
+                }
+                // avoid returning a new object if it matches the old value
+                if (JSON.stringify(oldDomain) !== JSON.stringify(ret)) {
+                    oldDomain = ret;
+                }
+                return oldDomain;
+            },
+        };
+    })
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get filled() {
+            const { fill, rendererConfig } = self;
+            return fill !== null && fill !== void 0 ? fill : readConfObject(rendererConfig, 'filled');
+        },
+        /**
+         * #getter
+         */
+        get summaryScoreModeSetting() {
+            const { summaryScoreMode: mode, rendererConfig } = self;
+            return mode !== null && mode !== void 0 ? mode : readConfObject(rendererConfig, 'summaryScoreMode');
+        },
+        /**
+         * #getter
+         */
+        get scaleOpts() {
+            return {
+                domain: self.domain,
+                stats: self.stats,
+                autoscaleType: self.autoscaleType,
+                scaleType: self.scaleType,
+                inverted: getConf(self, 'inverted'),
+            };
+        },
+        /**
+         * #getter
+         */
+        get canHaveFill() {
+            return self.rendererTypeName === 'XYPlotRenderer';
+        },
+        /**
+         * #getter
+         */
+        get displayCrossHatchesSetting() {
+            const { displayCrossHatches: hatches, rendererConfig } = self;
+            return hatches !== null && hatches !== void 0 ? hatches : readConfObject(rendererConfig, 'displayCrossHatches');
+        },
+        /**
+         * #getter
+         */
+        get hasResolution() {
+            return self.adapterCapabilities.includes('hasResolution');
+        },
+        /**
+         * #getter
+         */
+        get hasGlobalStats() {
+            return self.adapterCapabilities.includes('hasGlobalStats');
+        },
+    }))
+        .views(self => ({
+        /**
+         * #method
+         */
+        scoreTrackMenuItems() {
+            return [
+                ...(self.hasResolution
+                    ? [
+                        {
+                            label: 'Resolution',
+                            subMenu: [
+                                {
+                                    label: 'Finer resolution',
+                                    onClick: () => self.setResolution(self.resolution * 5),
+                                },
+                                {
+                                    label: 'Coarser resolution',
+                                    onClick: () => self.setResolution(self.resolution / 5),
+                                },
+                            ],
+                        },
+                        {
+                            label: 'Summary score mode',
+                            subMenu: ['min', 'max', 'avg', 'whiskers'].map(elt => ({
+                                label: elt,
+                                type: 'radio',
+                                checked: self.summaryScoreModeSetting === elt,
+                                onClick: () => self.setSummaryScoreMode(elt),
+                            })),
+                        },
+                    ]
+                    : []),
+                {
+                    label: self.scaleType === 'log' ? 'Set linear scale' : 'Set log scale',
+                    onClick: () => self.toggleLogScale(),
+                },
+                {
+                    label: 'Autoscale type',
+                    subMenu: [
+                        ['local', 'Local'],
+                        ...(self.hasGlobalStats
+                            ? [
+                                ['global', 'Global'],
+                                ['globalsd', 'Global ± 3σ'],
+                            ]
+                            : []),
+                        ['localsd', 'Local ± 3σ'],
+                    ].map(([val, label]) => ({
+                        label,
+                        type: 'radio',
+                        checked: self.autoscaleType === val,
+                        onClick: () => self.setAutoscale(val),
+                    })),
+                },
+                {
+                    label: 'Set min/max score',
+                    onClick: () => {
+                        getSession(self).queueDialog(handleClose => [
+                            SetMinMaxDlg,
+                            { model: self, handleClose },
+                        ]);
+                    },
+                },
+            ];
+        },
+    }))
+        .actions(self => {
+        const { reload: superReload } = self;
+        return {
+            /**
+             * #action
+             */
+            async reload() {
+                self.setError();
+                superReload();
+            },
+        };
+    });
+}
+//# sourceMappingURL=modelShared.js.map

package/esm/shared/modelShared.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"modelShared.js","sourceRoot":"","sources":["../../src/shared/modelShared.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,sBAAsB,EACtB,OAAO,EACP,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAEL,MAAM,EACN,UAAU,EACV,oBAAoB,GACrB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,oCAAoC,CAAA;AACtE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,SAAS;AACT,OAAO,EAAE,aAAa,EAAE,MAAM,SAAS,CAAA;AACvC,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,SAAS;AACT,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,mBAAmB,CAAC,CAAC,CAAA;AAE5D;;GAEG;AACH,MAAM,CAAC,OAAO,UAAU,iBAAiB,CACvC,YAAwC;IAExC,OAAO,KAAK;SACT,OAAO,CACN,iBAAiB,EACjB,KAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,iBAAiB,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC;QACnD;;WAEG;QACH,UAAU,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QAC3C;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC;QAChC;;WAEG;QACH,OAAO,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAClC;;WAEG;QACH,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAChC;;WAEG;QACH,QAAQ,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QACnC;;WAEG;QACH,QAAQ,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QACnC;;WAEG;QACH,gBAAgB,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC3C;;WAEG;QACH,qBAAqB,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAChD;;WAEG;QACH,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAChC;;WAEG;QACH,SAAS,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QACpC;;WAEG;QACH,mBAAmB,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC;QAC/C;;WAEG;QACH,WAAW,EAAE,KAAK,CAAC,QAAQ,CACzB,KAAK,CAAC,KAAK,CAAC;YACV,GAAG,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;YAC9B,GAAG,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;SAC/B,CAAC,EACF,EAAE,CACH;QACD;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,OAAO,EAAE,SAA+B;QACxC,KAAK,EAAE,SAA+D;QACtE,oBAAoB,EAAE,SAAwC;KAC/D,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,uBAAuB,CAAC,KAA6C;YACnE,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;YACpC,MAAM,OAAO,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE;gBACf,IAAI,CAAC,KAAK,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;aACpC;iBAAM,IACL,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,QAAQ,CAAC,GAAG,OAAO;gBAClD,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,QAAQ,CAAC,GAAG,OAAO,EAClD;gBACA,IAAI,CAAC,KAAK,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;aACpC;QACH,CAAC;QACD;;WAEG;QACH,QAAQ,CAAC,KAAc;YACrB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QACpB,CAAC;QACD;;WAEG;QACH,WAAW,CAAC,KAAc;YACxB,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAA;QACvB,CAAC;QACD;;WAEG;QACH,WAAW,CAAC,KAAc;YACxB,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAA;QACvB,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,OAAwB;YACjC,MAAM,EAAE,oBAAoB,EAAE,UAAU,EAAE,GAAG,IAAI,CAAA;YACjD,IAAI,UAAU,KAAK,SAAS,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,OAAO,EAAE;gBAC1D,UAAU,CAAC,KAAK,EAAE,CAAA;aACnB;YACD,IAAI,CAAC,oBAAoB,GAAG,OAAO,CAAA;QACrC,CAAC;QAED;;;;;WAKG;QACH,aAAa,CAAC,OAAgB;YAC5B,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,IAAI,oBAAoB,CAAC,OAAO,CAAC,EAAE;gBACjC,OAAO,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;aAC9B;QACH,CAAC;QAED;;WAEG;QACH,aAAa,CAAC,GAAW;YACvB,IAAI,CAAC,UAAU,GAAG,GAAG,CAAA;QACvB,CAAC;QAED;;WAEG;QACH,OAAO,CAAC,IAAY;YAClB,IAAI,IAAI,KAAK,CAAC,EAAE;gBACd,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;gBAChB,IAAI,CAAC,OAAO,GAAG,CAAC,CAAA;aACjB;iBAAM,IAAI,IAAI,KAAK,CAAC,EAAE;gBACrB,IAAI,CAAC,IAAI,GAAG,KAAK,CAAA;gBACjB,IAAI,CAAC,OAAO,GAAG,CAAC,CAAA;aACjB;iBAAM,IAAI,IAAI,KAAK,CAAC,EAAE;gBACrB,IAAI,CAAC,IAAI,GAAG,KAAK,CAAA;gBACjB,IAAI,CAAC,OAAO,GAAG,CAAC,CAAA;aACjB;QACH,CAAC;QAED;;WAEG;QACH,cAAc;YACZ,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,KAAK,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAA;QACtD,CAAC;QAED;;WAEG;QACH,YAAY,CAAC,KAAc;YACzB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QACpB,CAAC;QAED;;WAEG;QACH,mBAAmB,CAAC,GAAW;YAC7B,IAAI,CAAC,gBAAgB,GAAG,GAAG,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,YAAY,CAAC,GAAW;YACtB,IAAI,CAAC,SAAS,GAAG,GAAG,CAAA;QACtB,CAAC;QAED;;WAEG;QACH,WAAW,CAAC,GAAY;YACtB,IAAI,CAAC,WAAW,CAAC,GAAG,GAAG,GAAG,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,eAAe,CAAC,GAAW;YACzB,IAAI,CAAC,qBAAqB,GAAG,GAAG,CAAA;QAClC,CAAC;QAED;;WAEG;QACH,WAAW,CAAC,GAAY;YACtB,IAAI,CAAC,WAAW,CAAC,GAAG,GAAG,GAAG,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,kBAAkB;YAChB,IAAI,CAAC,mBAAmB,GAAG,CAAC,IAAI,CAAC,mBAAmB,CAAA;QACtD,CAAC;QAED;;WAEG;QACH,eAAe,CAAC,KAAc;YAC5B,IAAI,CAAC,mBAAmB,GAAG,KAAK,CAAA;QAClC,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,eAAe;YACjB,OAAO,IAAI,CAAC,aAAa,CAAC,IAAI,CAAA;QAChC,CAAC;QAED;;WAEG;QACH,IAAI,sBAAsB;;YACxB,OAAO,MAAA,IAAI,CAAC,qBAAqB,mCAAI,OAAO,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACxE,CAAC;QAED;;;WAGG;QACH,IAAI,OAAO;YACT,OAAO,SAAS,CAAA;QAClB,CAAC;QAED;;WAEG;QACH,IAAI,SAAS;;YACX,OAAO,MAAA,IAAI,CAAC,KAAK,mCAAI,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,CAAA;QACjD,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;;YACV,OAAO,MAAA,IAAI,CAAC,WAAW,CAAC,GAAG,mCAAI,OAAO,CAAC,IAAI,EAAE,UAAU,CAAC,CAAA;QAC1D,CAAC;QAED;;WAEG;QACH,IAAI,QAAQ;;YACV,OAAO,MAAA,IAAI,CAAC,WAAW,CAAC,GAAG,mCAAI,OAAO,CAAC,IAAI,EAAE,UAAU,CAAC,CAAA;QAC1D,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,mBAAmB;YACrB,MAAM,IAAI,GAAG,IAAI,CAAC,eAAe,CAAA;YACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;YACtC,OAAO,aAAa,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC,mBAAmB,CAAA;QAC/D,CAAC;QACD;;WAEG;QACH,IAAI,cAAc;YAChB,MAAM,EACJ,KAAK,EACL,mBAAmB,EACnB,IAAI,EACJ,OAAO,EACP,QAAQ,EACR,QAAQ,EACR,gBAAgB,EAChB,SAAS,EACT,gBAAgB,GACjB,GAAG,IAAI,CAAA;YACR,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAA;YACvE,OAAO,IAAI,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,CAC1C;gBACE,GAAG,UAAU;gBACb,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBACnC,GAAG,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/C,GAAG,CAAC,mBAAmB,KAAK,SAAS;oBACnC,CAAC,CAAC,EAAE,mBAAmB,EAAE;oBACzB,CAAC,CAAC,EAAE,CAAC;gBACP,GAAG,CAAC,gBAAgB,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,gBAAgB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/D,GAAG,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBACzC,GAAG,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/C,GAAG,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC/C,GAAG,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;aAC9C,EACD,MAAM,CAAC,IAAI,CAAC,CACb,CAAA;QACH,CAAC;QAED;;WAEG;QACH,IAAI,aAAa;;YACf,OAAO,MAAA,IAAI,CAAC,SAAS,mCAAI,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,CAAA;QACrD,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,IAAI,SAAS,GAAqB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;QACxC,OAAO;YACL;;eAEG;YACH,IAAI,MAAM;gBACR,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;gBACrD,IAAI,CAAC,KAAK,EAAE;oBACV,OAAO,SAAS,CAAA;iBACjB;gBAED,MAAM,GAAG,GAAG,aAAa,CAAC;oBACxB,MAAM,EAAE,CAAC,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,QAAQ,CAAC;oBACxC,MAAM,EAAE,CAAC,QAAQ,EAAE,QAAQ,CAAC;oBAC5B,SAAS;iBACV,CAAC,CAAA;gBAEF,+DAA+D;gBAC/D,IAAI,SAAS,KAAK,KAAK,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,MAAM,CAAC,SAAS,EAAE;oBACtD,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,SAAS,CAAC,CAAA;iBAC7B;gBAED,2DAA2D;gBAC3D,IAAI,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,KAAK,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE;oBACrD,SAAS,GAAG,GAAG,CAAA;iBAChB;gBAED,OAAO,SAAS,CAAA;YAClB,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,MAAM;YACR,MAAM,EAAE,IAAI,EAAE,cAAc,EAAE,GAAG,IAAI,CAAA;YACrC,OAAO,IAAI,aAAJ,IAAI,cAAJ,IAAI,GAAI,cAAc,CAAC,cAAc,EAAE,QAAQ,CAAC,CAAA;QACzD,CAAC;QACD;;WAEG;QACH,IAAI,uBAAuB;YACzB,MAAM,EAAE,gBAAgB,EAAE,IAAI,EAAE,cAAc,EAAE,GAAG,IAAI,CAAA;YACvD,OAAO,IAAI,aAAJ,IAAI,cAAJ,IAAI,GAAI,cAAc,CAAC,cAAc,EAAE,kBAAkB,CAAC,CAAA;QACnE,CAAC;QAED;;WAEG;QACH,IAAI,SAAS;YACX,OAAO;gBACL,MAAM,EAAE,IAAI,CAAC,MAAM;gBACnB,KAAK,EAAE,IAAI,CAAC,KAAK;gBACjB,aAAa,EAAE,IAAI,CAAC,aAAa;gBACjC,SAAS,EAAE,IAAI,CAAC,SAAS;gBACzB,QAAQ,EAAE,OAAO,CAAC,IAAI,EAAE,UAAU,CAAC;aACpC,CAAA;QACH,CAAC;QAED;;WAEG;QACH,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,gBAAgB,KAAK,gBAAgB,CAAA;QACnD,CAAC;QAED;;WAEG;QACH,IAAI,0BAA0B;YAC5B,MAAM,EAAE,mBAAmB,EAAE,OAAO,EAAE,cAAc,EAAE,GAAG,IAAI,CAAA;YAC7D,OAAO,OAAO,aAAP,OAAO,cAAP,OAAO,GAAI,cAAc,CAAC,cAAc,EAAE,qBAAqB,CAAC,CAAA;QACzE,CAAC;QACD;;WAEG;QACH,IAAI,aAAa;YACf,OAAO,IAAI,CAAC,mBAAmB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAA;QAC3D,CAAC;QAED;;WAEG;QACH,IAAI,cAAc;YAChB,OAAO,IAAI,CAAC,mBAAmB,CAAC,QAAQ,CAAC,gBAAgB,CAAC,CAAA;QAC5D,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,mBAAmB;YACjB,OAAO;gBACL,GAAG,CAAC,IAAI,CAAC,aAAa;oBACpB,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,YAAY;4BACnB,OAAO,EAAE;gCACP;oCACE,KAAK,EAAE,kBAAkB;oCACzB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;iCACvD;gCACD;oCACE,KAAK,EAAE,oBAAoB;oCAC3B,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;iCACvD;6BACF;yBACF;wBACD;4BACE,KAAK,EAAE,oBAAoB;4BAC3B,OAAO,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;gCACrD,KAAK,EAAE,GAAG;gCACV,IAAI,EAAE,OAAO;gCACb,OAAO,EAAE,IAAI,CAAC,uBAAuB,KAAK,GAAG;gCAC7C,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,mBAAmB,CAAC,GAAG,CAAC;6BAC7C,CAAC,CAAC;yBACJ;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;gBACP;oBACE,KAAK,EACH,IAAI,CAAC,SAAS,KAAK,KAAK,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,eAAe;oBACjE,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,cAAc,EAAE;iBACrC;gBACD;oBACE,KAAK,EAAE,gBAAgB;oBACvB,OAAO,EAAE;wBACP,CAAC,OAAO,EAAE,OAAO,CAAC;wBAClB,GAAG,CAAC,IAAI,CAAC,cAAc;4BACrB,CAAC,CAAC;gCACE,CAAC,QAAQ,EAAE,QAAQ,CAAC;gCACpB,CAAC,UAAU,EAAE,aAAa,CAAC;6BAC5B;4BACH,CAAC,CAAC,EAAE,CAAC;wBACP,CAAC,SAAS,EAAE,YAAY,CAAC;qBAC1B,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC;wBACvB,KAAK;wBACL,IAAI,EAAE,OAAO;wBACb,OAAO,EAAE,IAAI,CAAC,aAAa,KAAK,GAAG;wBACnC,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC;qBACtC,CAAC,CAAC;iBACJ;gBACD;oBACE,KAAK,EAAE,mBAAmB;oBAC1B,OAAO,EAAE,GAAG,EAAE;wBACZ,UAAU,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;4BAC1C,YAAY;4BACZ,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,EAAE;yBAC7B,CAAC,CAAA;oBACJ,CAAC;iBACF;aACF,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QACpC,OAAO;YACL;;eAEG;YACH,KAAK,CAAC,MAAM;gBACV,IAAI,CAAC,QAAQ,EAAE,CAAA;gBACf,WAAW,EAAE,CAAA;YACf,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}

package/esm/util.d.ts

@@ -1,4 +1,4 @@
-import { FeatureStats } from '@jbrowse/core/util/stats';
+import { QuantitativeStats } from '@jbrowse/core/util/stats';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 export declare const YSCALEBAR_LABEL_OFFSET = 5;
 export interface ScaleOpts {
@@ -47,25 +47,25 @@ export declare function getNiceDomain({ scaleType, domain, bounds, }: {
     domain: readonly [number, number];
     bounds: readonly [number | undefined, number | undefined];
 }): [number, number];
-export declare function groupBy<T>(array: T[], predicate: (v: T) => string): {
-    [key: string]: T[];
-};
-export declare function getStats(self: {
+export declare function getQuantitativeStats(self: {
     adapterConfig: AnyConfigurationModel;
+    configuration: AnyConfigurationModel;
     autoscaleType: string;
     setMessage: (str: string) => void;
 }, opts: {
     headers?: Record<string, string>;
     signal?: AbortSignal;
     filters?: string[];
-}): Promise<FeatureStats>;
-export declare function statsAutorun(self: {
-    estimatedStatsReady: boolean;
+}): Promise<QuantitativeStats>;
+export declare function quantitativeStatsAutorun(self: {
+    featureDensityStatsReady: boolean;
     regionTooLarge: boolean;
+    error: unknown;
     setLoading: (aborter: AbortController) => void;
     setError: (error: unknown) => void;
-    updateStats: (stats: FeatureStats, statsRegion: string) => void;
+    updateQuantitativeStats: (stats: QuantitativeStats, statsRegion: string) => void;
     renderProps: () => Record<string, unknown>;
+    configuration: AnyConfigurationModel;
     adapterConfig: AnyConfigurationModel;
     autoscaleType: string;
     setMessage: (str: string) => void;

package/esm/util.js

@@ -126,16 +126,7 @@ export function getNiceDomain({ scaleType, domain, bounds, }) {
     scale.nice();
     return scale.domain();
 }
-export function groupBy(array, predicate) {
-    var _a;
-    const result = {};
-    for (const value of array) {
-        const entry = (result[_a = predicate(value)] || (result[_a] = []));
-        entry.push(value);
-    }
-    return result;
-}
-export async function getStats(self, opts) {
+export async function getQuantitativeStats(self, opts) {
     const { rpcManager } = getSession(self);
     const nd = getConf(self, 'numStdDev') || 3;
     const { adapterConfig, autoscaleType } = self;
@@ -151,7 +142,7 @@ export async function getStats(self, opts) {
         ...opts,
     };
     if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
-        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalStats', params));
+        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params));
         const { scoreMin, scoreMean, scoreStdDev } = results;
         // globalsd uses heuristic to avoid unnecessary scoreMin<0
         // if the scoreMin is never less than 0
@@ -166,7 +157,7 @@ export async function getStats(self, opts) {
     }
     if (autoscaleType === 'local' || autoscaleType === 'localsd') {
         const { dynamicBlocks, bpPerPx } = getContainingView(self);
-        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', {
+        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionQuantitativeStats', {
             ...params,
             regions: dynamicBlocks.contentBlocks.map(region => {
                 const { start, end } = region;
@@ -191,28 +182,29 @@ export async function getStats(self, opts) {
             : results;
     }
     if (autoscaleType === 'zscale') {
-        return rpcManager.call(sessionId, 'WiggleGetGlobalStats', params);
+        return rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params);
     }
     throw new Error(`invalid autoscaleType '${autoscaleType}'`);
 }
-export function statsAutorun(self) {
+export function quantitativeStatsAutorun(self) {
     addDisposer(self, autorun(async () => {
         try {
             const aborter = new AbortController();
             const view = getContainingView(self);
             self.setLoading(aborter);
             if (!view.initialized ||
-                !self.estimatedStatsReady ||
-                self.regionTooLarge) {
+                !self.featureDensityStatsReady ||
+                self.regionTooLarge ||
+                self.error) {
                 return;
             }
             const statsRegion = JSON.stringify(view.dynamicBlocks);
-            const wiggleStats = await getStats(self, {
+            const wiggleStats = await getQuantitativeStats(self, {
                 signal: aborter.signal,
                 ...self.renderProps(),
             });
             if (isAlive(self)) {
-                self.updateStats(wiggleStats, statsRegion);
+                self.updateQuantitativeStats(wiggleStats, statsRegion);
             }
         }
         catch (e) {

package/esm/util.js.map

@@ -1 +1 @@
-{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EACL,gBAAgB,EAChB,UAAU,EACV,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAGtD,OAAO,EAAyB,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAI5E,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,MAAM,UAAU,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,WAAW,EAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,QAAQ,EAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,aAAa,EAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AACD;;;;GAIG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,WAAW,EAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,aAAa,EAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAED,MAAM,UAAU,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,CAC5B,IAIC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAiB,CAAC,MAAM,UAAU,CAAC,IAAI,CAClD,SAAS,EACT,sBAAsB,EACtB,MAAM,CACP,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,2BAA2B,EAC3B;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,sBAAsB,EACtB,MAAM,CACkB,CAAA;KAC3B;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAU5B;IACC,WAAW,CACT,IAAI,EACJ,OAAO,CACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,mBAAmB;gBACzB,IAAI,CAAC,cAAc,EACnB;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE;gBACvC,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aAC3C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC"}
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EACL,gBAAgB,EAChB,UAAU,EACV,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAGtD,OAAO,EAAyB,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAI5E,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,MAAM,UAAU,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,WAAW,EAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,QAAQ,EAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,aAAa,EAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AACD;;;;GAIG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,WAAW,EAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,aAAa,EAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,IAKC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,kCAAkC,EAClC,MAAM,CACP,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,uCAAuC,EACvC;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,kCAAkC,EAClC,MAAM,CACuB,CAAA;KAChC;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,IAexC;IACC,WAAW,CACT,IAAI,EACJ,OAAO,CACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,wBAAwB;gBAC9B,IAAI,CAAC,cAAc;gBACnB,IAAI,CAAC,KAAK,EACV;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,oBAAoB,CAAC,IAAI,EAAE;gBACnD,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,uBAAuB,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aACvD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "2.4.2",
+  "version": "2.6.1",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -37,7 +37,7 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@gmod/bbi": "^3.0.0",
+    "@gmod/bbi": "^4.0.0",
     "@mui/icons-material": "^5.0.2",
     "@popperjs/core": "^2.11.0",
     "clone": "^2.1.2",
@@ -55,7 +55,7 @@
     "@jbrowse/plugin-data-management": "^2.0.0",
     "@jbrowse/plugin-linear-genome-view": "^2.0.0",
     "@mui/material": "^5.0.0",
-    "@mui/x-data-grid": "^5.0.1",
+    "@mui/x-data-grid": "^6.0.1",
     "mobx": "^6.0.0",
     "mobx-react": "^7.0.0",
     "mobx-state-tree": "^5.0.0",
@@ -69,5 +69,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "36e382a70e7d220343b873e7e6aba5c83e5342c8"
+  "gitHead": "1cbe7ba097fb2d2763c776e5e429e4670cdd583c"
 }

package/src/BigWigAdapter/BigWigAdapter.test.ts

@@ -36,7 +36,7 @@ describe('adapter can fetch features from volvox.bw', () => {
   })
   it('get region stats', async () => {
     expect(
-      await adapter.getRegionStats({
+      await adapter.getRegionQuantitativeStats({
         refName: 'ctgA',
         start: 10000,
         end: 40000,
@@ -47,14 +47,19 @@ describe('adapter can fetch features from volvox.bw', () => {
 
   it('get local stats', async () => {
     expect(
-      await adapter.getMultiRegionStats([
+      await adapter.getMultiRegionQuantitativeStats([
         {
           refName: 'ctgA',
           start: 10000,
           end: 39999,
           assemblyName: 'volvox',
         },
-        { refName: 'ctgB', start: 0, end: 99, assemblyName: 'volvox' },
+        {
+          refName: 'ctgB',
+          start: 0,
+          end: 99,
+          assemblyName: 'volvox',
+        },
       ]),
     ).toMatchSnapshot()
   })