@jbrowse/plugin-wiggle 2.4.2 → 2.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (129) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  2. package/dist/BigWigAdapter/BigWigAdapter.js +2 -2
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -1
  4. package/dist/BigWigAdapter/configSchema.d.ts +20 -1
  5. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
  6. package/dist/DensityRenderer/configSchema.d.ts +33 -1
  7. package/dist/LinePlotRenderer/configSchema.d.ts +44 -1
  8. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  9. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  10. package/dist/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
  11. package/dist/LinearWiggleDisplay/models/model.d.ts +82 -35
  12. package/dist/LinearWiggleDisplay/models/model.js +8 -25
  13. package/dist/LinearWiggleDisplay/models/model.js.map +1 -1
  14. package/dist/MultiDensityRenderer/configSchema.d.ts +33 -1
  15. package/dist/MultiLineRenderer/configSchema.d.ts +51 -1
  16. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
  17. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  18. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
  19. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  20. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  21. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
  22. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +58 -11
  23. package/dist/MultiLinearWiggleDisplay/models/model.js +3 -19
  24. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  25. package/dist/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  26. package/dist/MultiRowLineRenderer/configSchema.d.ts +51 -1
  27. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  28. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  29. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +2 -2
  30. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  31. package/dist/MultiWiggleAdapter/configSchema.d.ts +18 -1
  32. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
  33. package/dist/MultiWiggleRendering.d.ts +0 -1
  34. package/dist/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  35. package/dist/QuantitativeTrack/configSchema.d.ts +73 -1
  36. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  37. package/dist/WiggleRPC/MultiWiggleGetSources.js +51 -0
  38. package/dist/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  39. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  40. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +37 -0
  41. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  42. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  43. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +54 -0
  44. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  45. package/dist/WiggleRPC/rpcMethods.d.ts +3 -47
  46. package/dist/WiggleRPC/rpcMethods.js +16 -117
  47. package/dist/WiggleRPC/rpcMethods.js.map +1 -1
  48. package/dist/WiggleRendering.d.ts +0 -1
  49. package/dist/XYPlotRenderer/configSchema.d.ts +65 -1
  50. package/dist/configSchema.d.ts +51 -1
  51. package/dist/index.d.ts +148 -23
  52. package/dist/index.js +2 -2
  53. package/dist/index.js.map +1 -1
  54. package/dist/shared/SetMinMaxDialog.d.ts +0 -1
  55. package/dist/shared/YScaleBar.d.ts +0 -1
  56. package/dist/util.d.ts +9 -6
  57. package/dist/util.js +13 -12
  58. package/dist/util.js.map +1 -1
  59. package/esm/BigWigAdapter/BigWigAdapter.d.ts +2 -2
  60. package/esm/BigWigAdapter/BigWigAdapter.js +4 -3
  61. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -1
  62. package/esm/BigWigAdapter/configSchema.d.ts +20 -1
  63. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +0 -1
  64. package/esm/DensityRenderer/configSchema.d.ts +33 -1
  65. package/esm/LinePlotRenderer/configSchema.d.ts +44 -1
  66. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  67. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  68. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +98 -1
  69. package/esm/LinearWiggleDisplay/models/model.d.ts +82 -35
  70. package/esm/LinearWiggleDisplay/models/model.js +10 -27
  71. package/esm/LinearWiggleDisplay/models/model.js.map +1 -1
  72. package/esm/MultiDensityRenderer/configSchema.d.ts +33 -1
  73. package/esm/MultiLineRenderer/configSchema.d.ts +51 -1
  74. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -1
  75. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +0 -1
  76. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +36 -37
  77. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -1
  78. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +0 -1
  79. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +107 -1
  80. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +58 -11
  81. package/esm/MultiLinearWiggleDisplay/models/model.js +4 -20
  82. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -1
  83. package/esm/MultiQuantitativeTrack/configSchema.d.ts +73 -1
  84. package/esm/MultiRowLineRenderer/configSchema.d.ts +51 -1
  85. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +68 -1
  86. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +1 -1
  87. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +3 -2
  88. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -1
  89. package/esm/MultiWiggleAdapter/configSchema.d.ts +18 -1
  90. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +0 -1
  91. package/esm/MultiWiggleRendering.d.ts +0 -1
  92. package/esm/MultiXYPlotRenderer/configSchema.d.ts +65 -1
  93. package/esm/QuantitativeTrack/configSchema.d.ts +73 -1
  94. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +21 -0
  95. package/esm/WiggleRPC/MultiWiggleGetSources.js +44 -0
  96. package/esm/WiggleRPC/MultiWiggleGetSources.js.map +1 -0
  97. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +14 -0
  98. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +30 -0
  99. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map +1 -0
  100. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +20 -0
  101. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +47 -0
  102. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map +1 -0
  103. package/esm/WiggleRPC/rpcMethods.d.ts +3 -47
  104. package/esm/WiggleRPC/rpcMethods.js +3 -111
  105. package/esm/WiggleRPC/rpcMethods.js.map +1 -1
  106. package/esm/WiggleRendering.d.ts +0 -1
  107. package/esm/XYPlotRenderer/configSchema.d.ts +65 -1
  108. package/esm/configSchema.d.ts +51 -1
  109. package/esm/index.d.ts +148 -23
  110. package/esm/index.js +3 -3
  111. package/esm/index.js.map +1 -1
  112. package/esm/shared/SetMinMaxDialog.d.ts +0 -1
  113. package/esm/shared/YScaleBar.d.ts +0 -1
  114. package/esm/util.d.ts +9 -6
  115. package/esm/util.js +10 -9
  116. package/esm/util.js.map +1 -1
  117. package/package.json +3 -3
  118. package/src/BigWigAdapter/BigWigAdapter.test.ts +8 -3
  119. package/src/BigWigAdapter/BigWigAdapter.ts +6 -3
  120. package/src/LinearWiggleDisplay/models/model.tsx +11 -29
  121. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +53 -50
  122. package/src/MultiLinearWiggleDisplay/models/model.tsx +4 -20
  123. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +1 -1
  124. package/src/WiggleRPC/MultiWiggleGetSources.ts +68 -0
  125. package/src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts +44 -0
  126. package/src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts +73 -0
  127. package/src/WiggleRPC/rpcMethods.ts +3 -170
  128. package/src/index.ts +4 -4
  129. package/src/util.ts +24 -17
package/esm/index.d.ts CHANGED
@@ -108,7 +108,33 @@ export default class WigglePlugin extends Plugin {
108
108
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
109
109
  userBpPerPxLimit: number | undefined;
110
110
  userByteSizeLimit: number | undefined;
111
- configuration: any;
111
+ configuration: {
112
+ [x: string]: any;
113
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
114
+ setSubschema(slotName: string, data: unknown): any;
115
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
116
+ maxFeatureScreenDensity: {
117
+ type: string;
118
+ description: string;
119
+ defaultValue: number;
120
+ };
121
+ fetchSizeLimit: {
122
+ type: string;
123
+ defaultValue: number;
124
+ description: string;
125
+ };
126
+ height: {
127
+ type: string;
128
+ defaultValue: number;
129
+ description: string;
130
+ };
131
+ mouseover: {
132
+ type: string;
133
+ description: string;
134
+ defaultValue: string;
135
+ contextVariable: string[];
136
+ };
137
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
112
138
  selectedRendering: string;
113
139
  resolution: number;
114
140
  fill: boolean | undefined;
@@ -186,8 +212,8 @@ export default class WigglePlugin extends Plugin {
186
212
  message: string;
187
213
  featureIdUnderMouse: string | undefined;
188
214
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
189
- estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
190
- estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
215
+ featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
216
+ featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
191
217
  } & {
192
218
  readonly height: number;
193
219
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -206,26 +232,26 @@ export default class WigglePlugin extends Plugin {
206
232
  readonly currentBytesRequested: number;
207
233
  readonly currentFeatureScreenDensity: number;
208
234
  readonly maxFeatureScreenDensity: any;
209
- readonly estimatedStatsReady: boolean;
235
+ readonly featureDensityStatsReady: boolean;
210
236
  readonly maxAllowableBytes: number;
211
237
  } & {
212
238
  setMessage(message: string): void;
213
239
  } & {
214
240
  afterAttach(): void;
215
- estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
216
- setRegionsStatsP(arg: any): void;
217
- setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
218
- clearRegionsStats(): void;
241
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
242
+ setFeatureDensityStatsP(arg: any): void;
243
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
244
+ clearFeatureDensityStats(): void;
219
245
  setHeight(displayHeight: number): number;
220
246
  resizeHeight(distance: number): number;
221
247
  setScrollTop(scrollTop: number): void;
222
- updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
248
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
223
249
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
224
250
  setCurrBpPerPx(n: number): void;
225
251
  deleteBlock(key: string): void;
226
252
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
227
253
  clearFeatureSelection(): void;
228
- setFeatureIdUnderMouse(feature: string | undefined): void;
254
+ setFeatureIdUnderMouse(feature?: string | undefined): void;
229
255
  reload(): void;
230
256
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
231
257
  } & {
@@ -254,7 +280,7 @@ export default class WigglePlugin extends Plugin {
254
280
  } | undefined;
255
281
  statsFetchInProgress: AbortController | undefined;
256
282
  } & {
257
- updateStats(stats: {
283
+ updateQuantitativeStats(stats: {
258
284
  scoreMin: number;
259
285
  scoreMax: number;
260
286
  }): void;
@@ -400,9 +426,32 @@ export default class WigglePlugin extends Plugin {
400
426
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
401
427
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
402
428
  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
429
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
430
+ maxFeatureScreenDensity: {
431
+ type: string;
432
+ description: string;
433
+ defaultValue: number;
434
+ };
435
+ fetchSizeLimit: {
436
+ type: string;
437
+ defaultValue: number;
438
+ description: string;
439
+ };
440
+ height: {
441
+ type: string;
442
+ defaultValue: number;
443
+ description: string;
444
+ };
445
+ mouseover: {
446
+ type: string;
447
+ description: string;
448
+ defaultValue: string;
449
+ contextVariable: string[];
450
+ };
451
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
403
452
  } & {
404
453
  type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
405
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
454
+ configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
406
455
  selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
407
456
  resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
408
457
  fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
@@ -477,8 +526,8 @@ export default class WigglePlugin extends Plugin {
477
526
  message: string;
478
527
  featureIdUnderMouse: string | undefined;
479
528
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
480
- estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
481
- estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
529
+ featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
530
+ featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
482
531
  } & {
483
532
  readonly height: number;
484
533
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -497,26 +546,26 @@ export default class WigglePlugin extends Plugin {
497
546
  readonly currentBytesRequested: number;
498
547
  readonly currentFeatureScreenDensity: number;
499
548
  readonly maxFeatureScreenDensity: any;
500
- readonly estimatedStatsReady: boolean;
549
+ readonly featureDensityStatsReady: boolean;
501
550
  readonly maxAllowableBytes: number;
502
551
  } & {
503
552
  setMessage(message: string): void;
504
553
  } & {
505
554
  afterAttach(): void;
506
- estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
507
- setRegionsStatsP(arg: any): void;
508
- setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
509
- clearRegionsStats(): void;
555
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
556
+ setFeatureDensityStatsP(arg: any): void;
557
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
558
+ clearFeatureDensityStats(): void;
510
559
  setHeight(displayHeight: number): number;
511
560
  resizeHeight(distance: number): number;
512
561
  setScrollTop(scrollTop: number): void;
513
- updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
562
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
514
563
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
515
564
  setCurrBpPerPx(n: number): void;
516
565
  deleteBlock(key: string): void;
517
566
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
518
567
  clearFeatureSelection(): void;
519
- setFeatureIdUnderMouse(feature: string | undefined): void;
568
+ setFeatureIdUnderMouse(feature?: string | undefined): void;
520
569
  reload(): void;
521
570
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
522
571
  } & {
@@ -545,7 +594,7 @@ export default class WigglePlugin extends Plugin {
545
594
  } | undefined;
546
595
  statsFetchInProgress: AbortController | undefined;
547
596
  } & {
548
- updateStats(stats: {
597
+ updateQuantitativeStats(stats: {
549
598
  scoreMin: number;
550
599
  scoreMax: number;
551
600
  }): void;
@@ -693,9 +742,33 @@ export default class WigglePlugin extends Plugin {
693
742
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
694
743
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
695
744
  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
745
+ configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
746
+ maxFeatureScreenDensity: {
747
+ type: string;
748
+ description: string;
749
+ defaultValue: number;
750
+ };
751
+ fetchSizeLimit: {
752
+ type: string;
753
+ defaultValue: number;
754
+ description: string;
755
+ };
756
+ height: {
757
+ type: string;
758
+ defaultValue: number;
759
+ description: string;
760
+ };
761
+ mouseover: {
762
+ type: string;
763
+ description: string;
764
+ defaultValue: string;
765
+ contextVariable: string[];
766
+ };
767
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
696
768
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
697
769
  type: string;
698
770
  id: string;
771
+ configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
699
772
  rpcDriverName: string | undefined;
700
773
  heightPreConfig: number | undefined;
701
774
  userBpPerPxLimit: number | undefined;
@@ -716,7 +789,59 @@ export default class WigglePlugin extends Plugin {
716
789
  XYPlotRenderer: typeof XYPlotRenderer;
717
790
  WiggleBaseRenderer: typeof WiggleBaseRenderer;
718
791
  linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
719
- xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
792
+ xyPlotRendererConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
793
+ filled: {
794
+ type: string;
795
+ defaultValue: boolean;
796
+ };
797
+ displayCrossHatches: {
798
+ type: string;
799
+ description: string;
800
+ defaultValue: boolean;
801
+ };
802
+ summaryScoreMode: {
803
+ type: string;
804
+ model: import("mobx-state-tree").ISimpleType<string>;
805
+ description: string;
806
+ defaultValue: string;
807
+ };
808
+ minSize: {
809
+ type: string;
810
+ defaultValue: number;
811
+ };
812
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
813
+ color: {
814
+ type: string;
815
+ description: string;
816
+ defaultValue: string;
817
+ };
818
+ posColor: {
819
+ type: string;
820
+ description: string;
821
+ defaultValue: string;
822
+ };
823
+ negColor: {
824
+ type: string;
825
+ description: string;
826
+ defaultValue: string;
827
+ };
828
+ clipColor: {
829
+ type: string;
830
+ description: string;
831
+ defaultValue: string;
832
+ };
833
+ bicolorPivot: {
834
+ type: string;
835
+ model: import("mobx-state-tree").ISimpleType<string>;
836
+ description: string;
837
+ defaultValue: string;
838
+ };
839
+ bicolorPivotValue: {
840
+ type: string;
841
+ defaultValue: number;
842
+ description: string;
843
+ };
844
+ }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
720
845
  utils: typeof utils;
721
846
  };
722
847
  }
package/esm/index.js CHANGED
@@ -19,7 +19,7 @@ import MultiRowLineRendererF from './MultiRowLineRenderer';
19
19
  import CreateMultiWiggleExtensionF from './CreateMultiWiggleExtension';
20
20
  import MultiWiggleAddTrackWidgetF from './MultiWiggleAddTrackWidget';
21
21
  import * as utils from './util';
22
- import { WiggleGetGlobalStats, WiggleGetMultiRegionStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
22
+ import { WiggleGetGlobalQuantitativeStats, WiggleGetMultiRegionQuantitativeStats, MultiWiggleGetSources, } from './WiggleRPC/rpcMethods';
23
23
  import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
24
24
  import { ReactComponent as XYPlotRendererReactComponent, configSchema as xyPlotRendererConfigSchema, XYPlotRenderer, } from './XYPlotRenderer';
25
25
  export default class WigglePlugin extends Plugin {
@@ -79,8 +79,8 @@ export default class WigglePlugin extends Plugin {
79
79
  return trackTypeGuesser(adapterName);
80
80
  };
81
81
  });
82
- pm.addRpcMethod(() => new WiggleGetGlobalStats(pm));
83
- pm.addRpcMethod(() => new WiggleGetMultiRegionStats(pm));
82
+ pm.addRpcMethod(() => new WiggleGetGlobalQuantitativeStats(pm));
83
+ pm.addRpcMethod(() => new WiggleGetMultiRegionQuantitativeStats(pm));
84
84
  pm.addRpcMethod(() => new MultiWiggleGetSources(pm));
85
85
  }
86
86
  }
package/esm/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAGL,WAAW,GACZ,MAAM,2BAA2B,CAAA;AAElC,SAAS;AACT,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAErD,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,mBAAmB,MAAM,sBAAsB,CAAA;AACtD,OAAO,gBAAgB,MAAM,mBAAmB,CAAA;AAChD,OAAO,eAAe,MAAM,kBAAkB,CAAA;AAC9C,OAAO,iBAAiB,MAAM,oBAAoB,CAAA;AAClD,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,yBAAyB,MAAM,4BAA4B,CAAA;AAClE,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,2BAA2B,MAAM,8BAA8B,CAAA;AACtE,OAAO,0BAA0B,MAAM,6BAA6B,CAAA;AAEpE,OAAO,KAAK,KAAK,MAAM,QAAQ,CAAA;AAE/B,OAAO,EACL,oBAAoB,EACpB,yBAAyB,EACzB,qBAAqB,GACtB,MAAM,wBAAwB,CAAA;AAE/B,OAAO,EACL,cAAc,IAAI,iCAAiC,EACnD,YAAY,IAAI,+BAA+B,GAChD,MAAM,uBAAuB,CAAA;AAE9B,OAAO,EACL,cAAc,IAAI,4BAA4B,EAC9C,YAAY,IAAI,0BAA0B,EAC1C,cAAc,GACf,MAAM,kBAAkB,CAAA;AAEzB,MAAM,CAAC,OAAO,OAAO,YAAa,SAAQ,MAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC;YACjC,4BAA4B;YAC5B,cAAc;YACd,kBAAkB;YAClB,+BAA+B;YAC/B,0BAA0B;YAC1B,KAAK;SACN,CAAA;IACH,CAAC;IAlEC,OAAO,CAAC,EAAiB;QACvB,mBAAmB,CAAC,EAAE,CAAC,CAAA;QACvB,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,yBAAyB,CAAC,EAAE,CAAC,CAAA;QAC7B,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACrB,eAAe,CAAC,EAAE,CAAC,CAAA;QACnB,gBAAgB,CAAC,EAAE,CAAC,CAAA;QACpB,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,0BAA0B,CAAC,EAAE,CAAC,CAAA;QAC9B,2BAA2B,CAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,oBAAoB,CAAC,EAAE,CAAC,CAAC,CAAA;QACnD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,yBAAyB,CAAC,EAAE,CAAC,CAAC,CAAA;QACxD,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,qBAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAWF;AAED,cAAc,QAAQ,CAAA;AAEtB,OAAO,EAAE,OAAO,IAAI,eAAe,EAAE,MAAM,mBAAmB,CAAA;AAC9D,OAAO,EACL,OAAO,EACP,cAAc,IAAI,iCAAiC,EACnD,YAAY,IAAI,+BAA+B,GAChD,MAAM,uBAAuB,CAAA;AAG9B,OAAO,EAAE,OAAO,IAAI,kBAAkB,EAAE,MAAM,sBAAsB,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAGzC,OAAO,EAGL,WAAW,GACZ,MAAM,2BAA2B,CAAA;AAElC,SAAS;AACT,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAErD,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,mBAAmB,MAAM,sBAAsB,CAAA;AACtD,OAAO,gBAAgB,MAAM,mBAAmB,CAAA;AAChD,OAAO,eAAe,MAAM,kBAAkB,CAAA;AAC9C,OAAO,iBAAiB,MAAM,oBAAoB,CAAA;AAClD,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,yBAAyB,MAAM,4BAA4B,CAAA;AAClE,OAAO,oBAAoB,MAAM,uBAAuB,CAAA;AACxD,OAAO,uBAAuB,MAAM,0BAA0B,CAAA;AAC9D,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,qBAAqB,MAAM,wBAAwB,CAAA;AAC1D,OAAO,2BAA2B,MAAM,8BAA8B,CAAA;AACtE,OAAO,0BAA0B,MAAM,6BAA6B,CAAA;AAEpE,OAAO,KAAK,KAAK,MAAM,QAAQ,CAAA;AAE/B,OAAO,EACL,gCAAgC,EAChC,qCAAqC,EACrC,qBAAqB,GACtB,MAAM,wBAAwB,CAAA;AAE/B,OAAO,EACL,cAAc,IAAI,iCAAiC,EACnD,YAAY,IAAI,+BAA+B,GAChD,MAAM,uBAAuB,CAAA;AAE9B,OAAO,EACL,cAAc,IAAI,4BAA4B,EAC9C,YAAY,IAAI,0BAA0B,EAC1C,cAAc,GACf,MAAM,kBAAkB,CAAA;AAEzB,MAAM,CAAC,OAAO,OAAO,YAAa,SAAQ,MAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC;YACjC,4BAA4B;YAC5B,cAAc;YACd,kBAAkB;YAClB,+BAA+B;YAC/B,0BAA0B;YAC1B,KAAK;SACN,CAAA;IACH,CAAC;IAlEC,OAAO,CAAC,EAAiB;QACvB,mBAAmB,CAAC,EAAE,CAAC,CAAA;QACvB,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,yBAAyB,CAAC,EAAE,CAAC,CAAA;QAC7B,iBAAiB,CAAC,EAAE,CAAC,CAAA;QACrB,eAAe,CAAC,EAAE,CAAC,CAAA;QACnB,gBAAgB,CAAC,EAAE,CAAC,CAAA;QACpB,oBAAoB,CAAC,EAAE,CAAC,CAAA;QACxB,uBAAuB,CAAC,EAAE,CAAC,CAAA;QAC3B,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,kBAAkB,CAAC,EAAE,CAAC,CAAA;QACtB,qBAAqB,CAAC,EAAE,CAAC,CAAA;QACzB,0BAA0B,CAAC,EAAE,CAAC,CAAA;QAC9B,2BAA2B,CAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,gCAAgC,CAAC,EAAE,CAAC,CAAC,CAAA;QAC/D,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,qCAAqC,CAAC,EAAE,CAAC,CAAC,CAAA;QACpE,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,qBAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAWF;AAED,cAAc,QAAQ,CAAA;AAEtB,OAAO,EAAE,OAAO,IAAI,eAAe,EAAE,MAAM,mBAAmB,CAAA;AAC9D,OAAO,EACL,OAAO,EACP,cAAc,IAAI,iCAAiC,EACnD,YAAY,IAAI,+BAA+B,GAChD,MAAM,uBAAuB,CAAA;AAG9B,OAAO,EAAE,OAAO,IAAI,kBAAkB,EAAE,MAAM,sBAAsB,CAAA"}
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  export default function SetMinMaxDlg(props: {
3
2
  model: {
4
3
  minScore: number;
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import { axisPropsFromTickScale } from 'react-d3-axis-mod';
3
2
  declare const _default: ({ model, orientation, }: {
4
3
  model: {
package/esm/util.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- import { FeatureStats } from '@jbrowse/core/util/stats';
1
+ import { QuantitativeStats } from '@jbrowse/core/util/stats';
2
2
  import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
3
  export declare const YSCALEBAR_LABEL_OFFSET = 5;
4
4
  export interface ScaleOpts {
@@ -50,22 +50,25 @@ export declare function getNiceDomain({ scaleType, domain, bounds, }: {
50
50
  export declare function groupBy<T>(array: T[], predicate: (v: T) => string): {
51
51
  [key: string]: T[];
52
52
  };
53
- export declare function getStats(self: {
53
+ export declare function getQuantitativeStats(self: {
54
54
  adapterConfig: AnyConfigurationModel;
55
+ configuration: AnyConfigurationModel;
55
56
  autoscaleType: string;
56
57
  setMessage: (str: string) => void;
57
58
  }, opts: {
58
59
  headers?: Record<string, string>;
59
60
  signal?: AbortSignal;
60
61
  filters?: string[];
61
- }): Promise<FeatureStats>;
62
- export declare function statsAutorun(self: {
63
- estimatedStatsReady: boolean;
62
+ }): Promise<QuantitativeStats>;
63
+ export declare function quantitativeStatsAutorun(self: {
64
+ featureDensityStatsReady: boolean;
64
65
  regionTooLarge: boolean;
66
+ error: unknown;
65
67
  setLoading: (aborter: AbortController) => void;
66
68
  setError: (error: unknown) => void;
67
- updateStats: (stats: FeatureStats, statsRegion: string) => void;
69
+ updateQuantitativeStats: (stats: QuantitativeStats, statsRegion: string) => void;
68
70
  renderProps: () => Record<string, unknown>;
71
+ configuration: AnyConfigurationModel;
69
72
  adapterConfig: AnyConfigurationModel;
70
73
  autoscaleType: string;
71
74
  setMessage: (str: string) => void;
package/esm/util.js CHANGED
@@ -135,7 +135,7 @@ export function groupBy(array, predicate) {
135
135
  }
136
136
  return result;
137
137
  }
138
- export async function getStats(self, opts) {
138
+ export async function getQuantitativeStats(self, opts) {
139
139
  const { rpcManager } = getSession(self);
140
140
  const nd = getConf(self, 'numStdDev') || 3;
141
141
  const { adapterConfig, autoscaleType } = self;
@@ -151,7 +151,7 @@ export async function getStats(self, opts) {
151
151
  ...opts,
152
152
  };
153
153
  if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
154
- const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalStats', params));
154
+ const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params));
155
155
  const { scoreMin, scoreMean, scoreStdDev } = results;
156
156
  // globalsd uses heuristic to avoid unnecessary scoreMin<0
157
157
  // if the scoreMin is never less than 0
@@ -166,7 +166,7 @@ export async function getStats(self, opts) {
166
166
  }
167
167
  if (autoscaleType === 'local' || autoscaleType === 'localsd') {
168
168
  const { dynamicBlocks, bpPerPx } = getContainingView(self);
169
- const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', {
169
+ const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionQuantitativeStats', {
170
170
  ...params,
171
171
  regions: dynamicBlocks.contentBlocks.map(region => {
172
172
  const { start, end } = region;
@@ -191,28 +191,29 @@ export async function getStats(self, opts) {
191
191
  : results;
192
192
  }
193
193
  if (autoscaleType === 'zscale') {
194
- return rpcManager.call(sessionId, 'WiggleGetGlobalStats', params);
194
+ return rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params);
195
195
  }
196
196
  throw new Error(`invalid autoscaleType '${autoscaleType}'`);
197
197
  }
198
- export function statsAutorun(self) {
198
+ export function quantitativeStatsAutorun(self) {
199
199
  addDisposer(self, autorun(async () => {
200
200
  try {
201
201
  const aborter = new AbortController();
202
202
  const view = getContainingView(self);
203
203
  self.setLoading(aborter);
204
204
  if (!view.initialized ||
205
- !self.estimatedStatsReady ||
206
- self.regionTooLarge) {
205
+ !self.featureDensityStatsReady ||
206
+ self.regionTooLarge ||
207
+ self.error) {
207
208
  return;
208
209
  }
209
210
  const statsRegion = JSON.stringify(view.dynamicBlocks);
210
- const wiggleStats = await getStats(self, {
211
+ const wiggleStats = await getQuantitativeStats(self, {
211
212
  signal: aborter.signal,
212
213
  ...self.renderProps(),
213
214
  });
214
215
  if (isAlive(self)) {
215
- self.updateStats(wiggleStats, statsRegion);
216
+ self.updateQuantitativeStats(wiggleStats, statsRegion);
216
217
  }
217
218
  }
218
219
  catch (e) {
package/esm/util.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EACL,gBAAgB,EAChB,UAAU,EACV,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAGtD,OAAO,EAAyB,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAI5E,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,MAAM,UAAU,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,WAAW,EAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,QAAQ,EAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,aAAa,EAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AACD;;;;GAIG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,WAAW,EAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,aAAa,EAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAED,MAAM,UAAU,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,CAC5B,IAIC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAiB,CAAC,MAAM,UAAU,CAAC,IAAI,CAClD,SAAS,EACT,sBAAsB,EACtB,MAAM,CACP,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,2BAA2B,EAC3B;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,sBAAsB,EACtB,MAAM,CACkB,CAAA;KAC3B;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,IAU5B;IACC,WAAW,CACT,IAAI,EACJ,OAAO,CACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,mBAAmB;gBACzB,IAAI,CAAC,cAAc,EACnB;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE;gBACvC,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aAC3C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC"}
1
+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EACL,gBAAgB,EAChB,UAAU,EACV,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAC3D,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAGtD,OAAO,EAAyB,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAI5E,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,MAAM,UAAU,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,WAAW,EAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,QAAQ,EAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,aAAa,EAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AACD;;;;GAIG;AACH,MAAM,UAAU,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,WAAW,EAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,aAAa,EAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAED,MAAM,UAAU,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,IAKC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAsB,CAAC,MAAM,UAAU,CAAC,IAAI,CACvD,SAAS,EACT,kCAAkC,EAClC,MAAM,CACP,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,uCAAuC,EACvC;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,kCAAkC,EAClC,MAAM,CACuB,CAAA;KAChC;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,IAexC;IACC,WAAW,CACT,IAAI,EACJ,OAAO,CACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,iBAAiB,CAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,wBAAwB;gBAC9B,IAAI,CAAC,cAAc;gBACnB,IAAI,CAAC,KAAK,EACV;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,oBAAoB,CAAC,IAAI,EAAE;gBACnD,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,uBAAuB,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aACvD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.4.2",
3
+ "version": "2.5.0",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -55,7 +55,7 @@
55
55
  "@jbrowse/plugin-data-management": "^2.0.0",
56
56
  "@jbrowse/plugin-linear-genome-view": "^2.0.0",
57
57
  "@mui/material": "^5.0.0",
58
- "@mui/x-data-grid": "^5.0.1",
58
+ "@mui/x-data-grid": "^6.0.1",
59
59
  "mobx": "^6.0.0",
60
60
  "mobx-react": "^7.0.0",
61
61
  "mobx-state-tree": "^5.0.0",
@@ -69,5 +69,5 @@
69
69
  "distModule": "esm/index.js",
70
70
  "srcModule": "src/index.ts",
71
71
  "module": "esm/index.js",
72
- "gitHead": "36e382a70e7d220343b873e7e6aba5c83e5342c8"
72
+ "gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
73
73
  }
@@ -36,7 +36,7 @@ describe('adapter can fetch features from volvox.bw', () => {
36
36
  })
37
37
  it('get region stats', async () => {
38
38
  expect(
39
- await adapter.getRegionStats({
39
+ await adapter.getRegionQuantitativeStats({
40
40
  refName: 'ctgA',
41
41
  start: 10000,
42
42
  end: 40000,
@@ -47,14 +47,19 @@ describe('adapter can fetch features from volvox.bw', () => {
47
47
 
48
48
  it('get local stats', async () => {
49
49
  expect(
50
- await adapter.getMultiRegionStats([
50
+ await adapter.getMultiRegionQuantitativeStats([
51
51
  {
52
52
  refName: 'ctgA',
53
53
  start: 10000,
54
54
  end: 39999,
55
55
  assemblyName: 'volvox',
56
56
  },
57
- { refName: 'ctgB', start: 0, end: 99, assemblyName: 'volvox' },
57
+ {
58
+ refName: 'ctgB',
59
+ start: 0,
60
+ end: 99,
61
+ assemblyName: 'volvox',
62
+ },
58
63
  ]),
59
64
  ).toMatchSnapshot()
60
65
  })
@@ -7,7 +7,10 @@ import { AugmentedRegion as Region } from '@jbrowse/core/util/types'
7
7
  import { openLocation } from '@jbrowse/core/util/io'
8
8
  import { updateStatus, Feature } from '@jbrowse/core/util'
9
9
  import { ObservableCreate } from '@jbrowse/core/util/rxjs'
10
- import { rectifyStats, UnrectifiedFeatureStats } from '@jbrowse/core/util/stats'
10
+ import {
11
+ rectifyStats,
12
+ UnrectifiedQuantitativeStats,
13
+ } from '@jbrowse/core/util/stats'
11
14
 
12
15
  interface WiggleOptions extends BaseOptions {
13
16
  resolution?: number
@@ -61,7 +64,7 @@ export default class BigWigAdapter extends BaseFeatureDataAdapter {
61
64
 
62
65
  public async getGlobalStats(opts?: BaseOptions) {
63
66
  const { header } = await this.setup(opts)
64
- return rectifyStats(header.totalSummary as UnrectifiedFeatureStats)
67
+ return rectifyStats(header.totalSummary as UnrectifiedQuantitativeStats)
65
68
  }
66
69
 
67
70
  public getFeatures(region: Region, opts: WiggleOptions = {}) {
@@ -103,7 +106,7 @@ export default class BigWigAdapter extends BaseFeatureDataAdapter {
103
106
  }
104
107
 
105
108
  // always render bigwig instead of calculating a feature density for it
106
- async estimateRegionsStats(_regions: Region[]) {
109
+ async getMultiRegionFeatureDensityStats(_regions: Region[]) {
107
110
  return { featureDensity: 0 }
108
111
  }
109
112
 
@@ -17,15 +17,14 @@ import {
17
17
  LinearGenomeViewModel,
18
18
  } from '@jbrowse/plugin-linear-genome-view'
19
19
  import { when } from 'mobx'
20
- import { isAlive, types, Instance } from 'mobx-state-tree'
20
+ import { types, Instance } from 'mobx-state-tree'
21
21
  import PluginManager from '@jbrowse/core/PluginManager'
22
22
 
23
23
  import { axisPropsFromTickScale } from 'react-d3-axis-mod'
24
24
  import {
25
25
  getNiceDomain,
26
26
  getScale,
27
- getStats,
28
- statsAutorun,
27
+ quantitativeStatsAutorun,
29
28
  YSCALEBAR_LABEL_OFFSET,
30
29
  } from '../../util'
31
30
 
@@ -134,7 +133,7 @@ function stateModelFactory(
134
133
  /**
135
134
  * #action
136
135
  */
137
- updateStats(stats: { scoreMin: number; scoreMax: number }) {
136
+ updateQuantitativeStats(stats: { scoreMin: number; scoreMax: number }) {
138
137
  const { scoreMin, scoreMax } = stats
139
138
  const EPSILON = 0.000001
140
139
  if (!self.stats) {
@@ -343,9 +342,6 @@ function stateModelFactory(
343
342
  * #getter
344
343
  */
345
344
  get rendererConfig() {
346
- const configBlob =
347
- getConf(self, ['renderers', self.rendererTypeName]) || {}
348
-
349
345
  const {
350
346
  color,
351
347
  displayCrossHatches,
@@ -355,8 +351,9 @@ function stateModelFactory(
355
351
  posColor,
356
352
  summaryScoreMode,
357
353
  scaleType,
354
+ rendererTypeName,
358
355
  } = self
359
-
356
+ const configBlob = getConf(self, ['renderers', rendererTypeName]) || {}
360
357
  return self.rendererType.configSchema.create(
361
358
  {
362
359
  ...configBlob,
@@ -382,15 +379,13 @@ function stateModelFactory(
382
379
  * #getter
383
380
  */
384
381
  get filled() {
385
- const { fill, rendererConfig: conf } = self
386
- return fill ?? readConfObject(conf, 'filled')
382
+ return readConfObject(self.rendererConfig, 'filled')
387
383
  },
388
384
  /**
389
385
  * #getter
390
386
  */
391
387
  get summaryScoreModeSetting() {
392
- const { summaryScoreMode, rendererConfig: conf } = self
393
- return summaryScoreMode ?? readConfObject(conf, 'summaryScoreMode')
388
+ return readConfObject(self.rendererConfig, 'summaryScoreMode')
394
389
  },
395
390
  /**
396
391
  * #getter
@@ -460,8 +455,7 @@ function stateModelFactory(
460
455
  * #getter
461
456
  */
462
457
  get displayCrossHatchesSetting() {
463
- const { displayCrossHatches: hatches, rendererConfig: conf } = self
464
- return hatches ?? readConfObject(conf, 'displayCrossHatches')
458
+ return readConfObject(self.rendererConfig, 'displayCrossHatches')
465
459
  },
466
460
  }
467
461
  })
@@ -682,23 +676,11 @@ function stateModelFactory(
682
676
  */
683
677
  async reload() {
684
678
  self.setError()
685
- const aborter = new AbortController()
686
- self.setLoading(aborter)
687
- try {
688
- const stats = await getStats(self, {
689
- signal: aborter.signal,
690
- ...self.renderProps(),
691
- })
692
- if (isAlive(self)) {
693
- self.updateStats(stats)
694
- superReload()
695
- }
696
- } catch (e) {
697
- self.setError(e)
698
- }
679
+ superReload()
699
680
  },
681
+
700
682
  afterAttach() {
701
- statsAutorun(self)
683
+ quantitativeStatsAutorun(self)
702
684
  },
703
685
  /**
704
686
  * #action