@jbrowse/plugin-wiggle 2.4.2 → 2.5.0

package/dist/WiggleRPC/rpcMethods.d.ts

@@ -1,47 +1,3 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { Region } from '@jbrowse/core/util';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { FeatureStats } from '@jbrowse/core/util/stats';
-export declare class WiggleGetGlobalStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        headers?: Record<string, string>;
-        sessionId: string;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class WiggleGetMultiRegionStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class MultiWiggleGetSources extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<any>;
-}
+export * from './MultiWiggleGetSources';
+export * from './WiggleGetMultiRegionQuantitativeStats';
+export * from './WiggleGetGlobalQuantitativeStats';

package/dist/WiggleRPC/rpcMethods.js

@@ -1,121 +1,20 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.MultiWiggleGetSources = exports.WiggleGetMultiRegionStats = exports.WiggleGetGlobalStats = void 0;
-const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
-const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
-const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const util_1 = require("@jbrowse/core/util");
-const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
-class WiggleGetGlobalStats extends RpcMethodType_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetGlobalStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getGlobalStats(deserializedArgs);
-    }
-}
-exports.WiggleGetGlobalStats = WiggleGetGlobalStats;
-class WiggleGetMultiRegionStats extends RpcMethodType_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetMultiRegionStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        if (dataAdapter instanceof BaseAdapter_1.BaseFeatureDataAdapter) {
-            return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
-        }
-        throw new Error('Data adapter not found');
-    }
-}
-exports.WiggleGetMultiRegionStats = WiggleGetMultiRegionStats;
-class MultiWiggleGetSources extends RpcMethodType_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'MultiWiggleGetSources';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getSources(regions, deserializedArgs);
-    }
-}
-exports.MultiWiggleGetSources = MultiWiggleGetSources;
+__exportStar(require("./MultiWiggleGetSources"), exports);
+__exportStar(require("./WiggleGetMultiRegionQuantitativeStats"), exports);
+__exportStar(require("./WiggleGetGlobalQuantitativeStats"), exports);
 //# sourceMappingURL=rpcMethods.js.map

package/dist/WiggleRPC/rpcMethods.js.map

@@ -1 +1 @@
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+{"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,0DAAuC;AACvC,0EAAuD;AACvD,qEAAkD"}

package/dist/WiggleRendering.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {

package/dist/XYPlotRenderer/configSchema.d.ts

@@ -1,2 +1,66 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/dist/configSchema.d.ts

@@ -1,2 +1,52 @@
-declare const WiggleRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default WiggleRenderer;

package/dist/index.d.ts

@@ -108,7 +108,33 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
                 userBpPerPxLimit: number | undefined;
                 userByteSizeLimit: number | undefined;
-                configuration: any;
+                configuration: {
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    setSubschema(slotName: string, data: unknown): any;
+                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">> & import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
                 selectedRendering: string;
                 resolution: number;
                 fill: boolean | undefined;
@@ -186,8 +212,8 @@ export default class WigglePlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -206,26 +232,26 @@ export default class WigglePlugin extends Plugin {
                 readonly currentBytesRequested: number;
                 readonly currentFeatureScreenDensity: number;
                 readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
+                readonly featureDensityStatsReady: boolean;
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
             } & {
                 afterAttach(): void;
-                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-                setRegionsStatsP(arg: any): void;
-                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionsStats(): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 reload(): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
             } & {
@@ -254,7 +280,7 @@ export default class WigglePlugin extends Plugin {
                 } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats(stats: {
+                updateQuantitativeStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -400,9 +426,32 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             } & {
                 type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
-                configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+                configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
                 selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
                 resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
                 fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
@@ -477,8 +526,8 @@ export default class WigglePlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
+                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
             } & {
                 readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -497,26 +546,26 @@ export default class WigglePlugin extends Plugin {
                 readonly currentBytesRequested: number;
                 readonly currentFeatureScreenDensity: number;
                 readonly maxFeatureScreenDensity: any;
-                readonly estimatedStatsReady: boolean;
+                readonly featureDensityStatsReady: boolean;
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
             } & {
                 afterAttach(): void;
-                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
-                setRegionsStatsP(arg: any): void;
-                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionsStats(): void;
+                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+                setFeatureDensityStatsP(arg: any): void;
+                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+                clearFeatureDensityStats(): void;
                 setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
                 selectFeature(feature: import("@jbrowse/core/util").Feature): void;
                 clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature: string | undefined): void;
+                setFeatureIdUnderMouse(feature?: string | undefined): void;
                 reload(): void;
                 setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
             } & {
@@ -545,7 +594,7 @@ export default class WigglePlugin extends Plugin {
                 } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
-                updateStats(stats: {
+                updateQuantitativeStats(stats: {
                     scoreMin: number;
                     scoreMax: number;
                 }): void;
@@ -693,9 +742,33 @@ export default class WigglePlugin extends Plugin {
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
                 userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
                 userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+                    maxFeatureScreenDensity: {
+                        type: string;
+                        description: string;
+                        defaultValue: number;
+                    };
+                    fetchSizeLimit: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    height: {
+                        type: string;
+                        defaultValue: number;
+                        description: string;
+                    };
+                    mouseover: {
+                        type: string;
+                        description: string;
+                        defaultValue: string;
+                        contextVariable: string[];
+                    };
+                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
             }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
                 type: string;
                 id: string;
+                configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
                 rpcDriverName: string | undefined;
                 heightPreConfig: number | undefined;
                 userBpPerPxLimit: number | undefined;
@@ -716,7 +789,59 @@ export default class WigglePlugin extends Plugin {
         XYPlotRenderer: typeof XYPlotRenderer;
         WiggleBaseRenderer: typeof WiggleBaseRenderer;
         linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
-        xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        xyPlotRendererConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            filled: {
+                type: string;
+                defaultValue: boolean;
+            };
+            displayCrossHatches: {
+                type: string;
+                description: string;
+                defaultValue: boolean;
+            };
+            summaryScoreMode: {
+                type: string;
+                model: import("mobx-state-tree").ISimpleType<string>;
+                description: string;
+                defaultValue: string;
+            };
+            minSize: {
+                type: string;
+                defaultValue: number;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            color: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            posColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            negColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            clipColor: {
+                type: string;
+                description: string;
+                defaultValue: string;
+            };
+            bicolorPivot: {
+                type: string;
+                model: import("mobx-state-tree").ISimpleType<string>;
+                description: string;
+                defaultValue: string;
+            };
+            bicolorPivotValue: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
         utils: typeof utils;
     };
 }

package/dist/index.js

@@ -111,8 +111,8 @@ class WigglePlugin extends Plugin_1.default {
                 return trackTypeGuesser(adapterName);
             };
         });
-        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetGlobalStats(pm));
-        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetMultiRegionStats(pm));
+        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetGlobalQuantitativeStats(pm));
+        pm.addRpcMethod(() => new rpcMethods_1.WiggleGetMultiRegionQuantitativeStats(pm));
         pm.addRpcMethod(() => new rpcMethods_1.MultiWiggleGetSources(pm));
     }
 }

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAGzC,sDAIkC;AAElC,SAAS;AACT,8EAAqD;AAErD,oEAA4C;AAC5C,4EAAoD;AACpD,sFAA8D;AAC9D,8EAAsD;AACtD,wEAAgD;AAChD,sEAA8C;AAC9C,0EAAkD;AAClD,gFAAwD;AACxD,0FAAkE;AAClE,gFAAwD;AACxD,sFAA8D;AAC9D,kFAA0D;AAC1D,4EAAoD;AACpD,kFAA0D;AAC1D,8FAAsE;AACtE,4FAAoE;AAEpE,8CAA+B;AAE/B,uDAI+B;AAE/B,+DAG8B;AAE9B,qDAIyB;AAEzB,MAAqB,YAAa,SAAQ,gBAAM;IAAhD;;QACE,SAAI,GAAG,cAAc,CAAA;QA2DrB,YAAO,GAAG;YACR,iCAAiC,EAAjC,oCAAiC;YACjC,4BAA4B,EAA5B,+BAA4B;YAC5B,cAAc,EAAd,+BAAc;YACd,kBAAkB,EAAlB,4BAAkB;YAClB,+BAA+B,EAA/B,kCAA+B;YAC/B,0BAA0B,EAA1B,6BAA0B;YAC1B,KAAK;SACN,CAAA;IACH,CAAC;IAlEC,OAAO,CAAC,EAAiB;QACvB,IAAA,4BAAmB,EAAC,EAAE,CAAC,CAAA;QACvB,IAAA,uBAAc,EAAC,EAAE,CAAC,CAAA;QAClB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,kCAAyB,EAAC,EAAE,CAAC,CAAA;QAC7B,IAAA,0BAAiB,EAAC,EAAE,CAAC,CAAA;QACrB,IAAA,wBAAe,EAAC,EAAE,CAAC,CAAA;QACnB,IAAA,yBAAgB,EAAC,EAAE,CAAC,CAAA;QACpB,IAAA,6BAAoB,EAAC,EAAE,CAAC,CAAA;QACxB,IAAA,gCAAuB,EAAC,EAAE,CAAC,CAAA;QAC3B,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,2BAAkB,EAAC,EAAE,CAAC,CAAA;QACtB,IAAA,8BAAqB,EAAC,EAAE,CAAC,CAAA;QACzB,IAAA,mCAA0B,EAAC,EAAE,CAAC,CAAA;QAC9B,IAAA,oCAA2B,EAAC,EAAE,CAAC,CAAA;QAE/B,EAAE,CAAC,mBAAmB,CACpB,8BAA8B,EAC9B,CAAC,EAAkB,EAAE,EAAE;YACrB,OAAO,CAAC,IAAkB,EAAE,KAAoB,EAAE,IAAa,EAAE,EAAE;gBACjE,MAAM,UAAU,GAAG,iBAAiB,CAAA;gBACpC,MAAM,WAAW,GAAG,eAAe,CAAA;gBACnC,MAAM,QAAQ,GAAG,IAAA,oBAAW,EAAC,IAAI,CAAC,CAAA;gBAClC,MAAM,GAAG,GAAG;oBACV,IAAI,EAAE,WAAW;oBACjB,cAAc,EAAE,IAAI;iBACrB,CAAA;gBAED,IAAI,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE;oBACtC,OAAO,GAAG,CAAA;iBACX;qBAAM,IAAI,IAAI,KAAK,WAAW,EAAE;oBAC/B,OAAO,GAAG,CAAA;iBACX;gBAED,OAAO,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;YAC9B,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QACD,EAAE,CAAC,mBAAmB,CACpB,gCAAgC,EAChC,CAAC,gBAAkC,EAAE,EAAE;YACrC,OAAO,CAAC,WAAmB,EAAE,EAAE;gBAC7B,IAAI,WAAW,KAAK,eAAe,EAAE;oBACnC,OAAO,mBAAmB,CAAA;iBAC3B;gBACD,OAAO,gBAAgB,CAAC,WAAW,CAAC,CAAA;YACtC,CAAC,CAAA;QACH,CAAC,CACF,CAAA;QAED,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,6CAAgC,CAAC,EAAE,CAAC,CAAC,CAAA;QAC/D,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,kDAAqC,CAAC,EAAE,CAAC,CAAC,CAAA;QACpE,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE,CAAC,IAAI,kCAAqB,CAAC,EAAE,CAAC,CAAC,CAAA;IACtD,CAAC;CAWF;AArED,+BAqEC;AAED,yCAAsB;AAEtB,qDAA8D;AAArD,mIAAA,OAAO,OAAmB;AACnC,6DAI8B;AAH5B,8GAAA,OAAO,OAAA;AACP,wIAAA,cAAc,OAAqC;AACnD,sIAAA,YAAY,OAAmC;AAIjD,2DAAoE;AAA3D,yIAAA,OAAO,OAAsB"}

package/dist/shared/SetMinMaxDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 export default function SetMinMaxDlg(props: {
     model: {
         minScore: number;

package/dist/shared/YScaleBar.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { axisPropsFromTickScale } from 'react-d3-axis-mod';
 declare const _default: ({ model, orientation, }: {
     model: {