@jbrowse/plugin-wiggle 2.4.2 → 2.5.0

package/esm/MultiXYPlotRenderer/configSchema.d.ts

@@ -1,2 +1,66 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/esm/QuantitativeTrack/configSchema.d.ts

@@ -1,3 +1,75 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    name: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    assemblyNames: {
+        description: string;
+        type: string;
+        defaultValue: string[];
+    };
+    description: {
+        description: string;
+        type: string;
+        defaultValue: string;
+    };
+    category: {
+        description: string;
+        type: string;
+        defaultValue: never[];
+    };
+    metadata: {
+        type: string;
+        description: string;
+        defaultValue: {};
+    };
+    adapter: import("mobx-state-tree").IAnyModelType;
+    textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        indexingAttributes: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        indexingFeatureTypesToExclude: {
+            type: string;
+            description: string;
+            defaultValue: string[];
+        };
+        textSearchAdapter: import("mobx-state-tree").IAnyModelType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+    formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        feature: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        subfeatures: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        depth: {
+            type: string;
+            defaultValue: number;
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        config: {
+            type: string;
+            description: string;
+            defaultValue: {};
+            contextVariable: string[];
+        };
+        hideUris: {
+            type: string;
+            defaultValue: boolean;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>, undefined>>;
 export default configSchemaFactory;

package/esm/WiggleRPC/MultiWiggleGetSources.d.ts

@@ -0,0 +1,21 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
+import { Region } from '@jbrowse/core/util';
+import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+export declare class MultiWiggleGetSources extends RpcMethodType {
+    name: string;
+    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
+    serializeArguments(args: RenderArgs & {
+        signal?: AbortSignal;
+        statusCallback?: (arg: string) => void;
+    }, rpcDriverClassName: string): Promise<{}>;
+    execute(args: {
+        adapterConfig: AnyConfigurationModel;
+        signal?: RemoteAbortSignal;
+        sessionId: string;
+        headers?: Record<string, string>;
+        regions: Region[];
+        bpPerPx: number;
+    }, rpcDriverClassName: string): Promise<any>;
+}

package/esm/WiggleRPC/MultiWiggleGetSources.js

@@ -0,0 +1,44 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
+import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import { renameRegionsIfNeeded } from '@jbrowse/core/util';
+export class MultiWiggleGetSources extends RpcMethodType {
+    constructor() {
+        super(...arguments);
+        this.name = 'MultiWiggleGetSources';
+    }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    async deserializeArguments(args, rpcDriverClassName) {
+        const l = await super.deserializeArguments(args, rpcDriverClassName);
+        return {
+            ...l,
+            filters: args.filters
+                ? new SerializableFilterChain({
+                    filters: args.filters,
+                })
+                : undefined,
+        };
+    }
+    async serializeArguments(args, rpcDriverClassName) {
+        var _a, _b, _c;
+        const pm = this.pluginManager;
+        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
+        if (!assemblyManager) {
+            return args;
+        }
+        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
+            ...args,
+            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
+        });
+        return super.serializeArguments(renamedArgs, rpcDriverClassName);
+    }
+    async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
+        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const { regions, adapterConfig, sessionId } = deserializedArgs;
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
+        // @ts-expect-error
+        return dataAdapter.getSources(regions, deserializedArgs);
+    }
+}
+//# sourceMappingURL=MultiWiggleGetSources.js.map

package/esm/WiggleRPC/MultiWiggleGetSources.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiWiggleGetSources.js","sourceRoot":"","sources":["../../src/WiggleRPC/MultiWiggleGetSources.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAIlE,MAAM,OAAO,qBAAsB,SAAQ,aAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IA0DhC,CAAC;IAxDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}

package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts

@@ -0,0 +1,14 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
+import { QuantitativeStats } from '@jbrowse/core/util/stats';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
+    name: string;
+    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
+    execute(args: {
+        adapterConfig: AnyConfigurationModel;
+        signal?: RemoteAbortSignal;
+        headers?: Record<string, string>;
+        sessionId: string;
+    }, rpcDriverClassName: string): Promise<QuantitativeStats>;
+}

package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js

@@ -0,0 +1,30 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
+import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
+    constructor() {
+        super(...arguments);
+        this.name = 'WiggleGetGlobalQuantitativeStats';
+    }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    async deserializeArguments(args, rpcDriverClassName) {
+        const l = await super.deserializeArguments(args, rpcDriverClassName);
+        return {
+            ...l,
+            filters: args.filters
+                ? new SerializableFilterChain({
+                    filters: args.filters,
+                })
+                : undefined,
+        };
+    }
+    async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
+        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const { adapterConfig, sessionId } = deserializedArgs;
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
+        // @ts-expect-error
+        return dataAdapter.getGlobalStats(deserializedArgs);
+    }
+}
+//# sourceMappingURL=WiggleGetGlobalQuantitativeStats.js.map

package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"WiggleGetGlobalQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetGlobalQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAKzE,MAAM,OAAO,gCAAiC,SAAQ,aAAa;IAAnE;;QACE,SAAI,GAAG,kCAAkC,CAAA;IAmC3C,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF"}

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts

@@ -0,0 +1,20 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
+import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
+import { Region } from '@jbrowse/core/util';
+export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
+    name: string;
+    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
+    serializeArguments(args: RenderArgs & {
+        signal?: AbortSignal;
+        statusCallback?: (arg: string) => void;
+    }, rpcDriverClassName: string): Promise<{}>;
+    execute(args: {
+        adapterConfig: {};
+        signal?: RemoteAbortSignal;
+        sessionId: string;
+        headers?: Record<string, string>;
+        regions: Region[];
+        bpPerPx: number;
+    }, rpcDriverClassName: string): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
+}

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -0,0 +1,47 @@
+import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
+import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import { renameRegionsIfNeeded } from '@jbrowse/core/util';
+import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
+    constructor() {
+        super(...arguments);
+        this.name = 'WiggleGetMultiRegionQuantitativeStats';
+    }
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    async deserializeArguments(args, rpcDriverClassName) {
+        const l = await super.deserializeArguments(args, rpcDriverClassName);
+        return {
+            ...l,
+            filters: args.filters
+                ? new SerializableFilterChain({
+                    filters: args.filters,
+                })
+                : undefined,
+        };
+    }
+    async serializeArguments(args, rpcDriverClassName) {
+        var _a, _b, _c;
+        const pm = this.pluginManager;
+        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
+        if (!assemblyManager) {
+            return args;
+        }
+        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
+            ...args,
+            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
+        });
+        return super.serializeArguments(renamedArgs, rpcDriverClassName);
+    }
+    async execute(args, rpcDriverClassName) {
+        const pm = this.pluginManager;
+        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const { regions, adapterConfig, sessionId } = deserializedArgs;
+        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
+        if (dataAdapter instanceof BaseFeatureDataAdapter) {
+            return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
+        }
+        throw new Error('Data adapter not found');
+    }
+}
+//# sourceMappingURL=WiggleGetMultiRegionQuantitativeStats.js.map

package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"WiggleGetMultiRegionQuantitativeStats.js","sourceRoot":"","sources":["../../src/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAEhH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAU,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAEhF,MAAM,OAAO,qCAAsC,SAAQ,aAAa;IAAxE;;QACE,SAAI,GAAG,uCAAuC,CAAA;IA+DhD,CAAC;IA7DC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAGC,EACD,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,sBAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,+BAA+B,CAChD,OAAO,EACP,gBAAgB,CACjB,CAAA;SACF;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF"}

package/esm/WiggleRPC/rpcMethods.d.ts

@@ -1,47 +1,3 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { Region } from '@jbrowse/core/util';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { FeatureStats } from '@jbrowse/core/util/stats';
-export declare class WiggleGetGlobalStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        headers?: Record<string, string>;
-        sessionId: string;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class WiggleGetMultiRegionStats extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<FeatureStats>;
-}
-export declare class MultiWiggleGetSources extends RpcMethodType {
-    name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<{}>;
-    execute(args: {
-        adapterConfig: {};
-        signal?: RemoteAbortSignal;
-        sessionId: string;
-        headers?: Record<string, string>;
-        regions: Region[];
-        bpPerPx: number;
-    }, rpcDriverClassName: string): Promise<any>;
-}
+export * from './MultiWiggleGetSources';
+export * from './WiggleGetMultiRegionQuantitativeStats';
+export * from './WiggleGetGlobalQuantitativeStats';

package/esm/WiggleRPC/rpcMethods.js

@@ -1,112 +1,4 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
-import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
-import { renameRegionsIfNeeded } from '@jbrowse/core/util';
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-export class WiggleGetGlobalStats extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetGlobalStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getGlobalStats(deserializedArgs);
-    }
-}
-export class WiggleGetMultiRegionStats extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'WiggleGetMultiRegionStats';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        if (dataAdapter instanceof BaseFeatureDataAdapter) {
-            return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
-        }
-        throw new Error('Data adapter not found');
-    }
-}
-export class MultiWiggleGetSources extends RpcMethodType {
-    constructor() {
-        super(...arguments);
-        this.name = 'MultiWiggleGetSources';
-    }
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new SerializableFilterChain({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
-    async execute(args, rpcDriverClassName) {
-        const pm = this.pluginManager;
-        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
-        const { regions, adapterConfig, sessionId } = deserializedArgs;
-        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
-        // @ts-expect-error
-        return dataAdapter.getSources(regions, deserializedArgs);
-    }
-}
+export * from './MultiWiggleGetSources';
+export * from './WiggleGetMultiRegionQuantitativeStats';
+export * from './WiggleGetGlobalQuantitativeStats';
 //# sourceMappingURL=rpcMethods.js.map

package/esm/WiggleRPC/rpcMethods.js.map

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package/esm/WiggleRendering.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { Region } from '@jbrowse/core/util/types';
 import { Feature } from '@jbrowse/core/util';
 declare function WiggleRendering(props: {

package/esm/XYPlotRenderer/configSchema.d.ts

@@ -1,2 +1,66 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    filled: {
+        type: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    summaryScoreMode: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    minSize: {
+        type: string;
+        defaultValue: number;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/esm/configSchema.d.ts

@@ -1,2 +1,52 @@
-declare const WiggleRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default WiggleRenderer;