@jbrowse/plugin-wiggle 2.4.2 → 2.5.0

package/dist/util.d.ts

@@ -1,4 +1,4 @@
-import { FeatureStats } from '@jbrowse/core/util/stats';
+import { QuantitativeStats } from '@jbrowse/core/util/stats';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 export declare const YSCALEBAR_LABEL_OFFSET = 5;
 export interface ScaleOpts {
@@ -50,22 +50,25 @@ export declare function getNiceDomain({ scaleType, domain, bounds, }: {
 export declare function groupBy<T>(array: T[], predicate: (v: T) => string): {
     [key: string]: T[];
 };
-export declare function getStats(self: {
+export declare function getQuantitativeStats(self: {
     adapterConfig: AnyConfigurationModel;
+    configuration: AnyConfigurationModel;
     autoscaleType: string;
     setMessage: (str: string) => void;
 }, opts: {
     headers?: Record<string, string>;
     signal?: AbortSignal;
     filters?: string[];
-}): Promise<FeatureStats>;
-export declare function statsAutorun(self: {
-    estimatedStatsReady: boolean;
+}): Promise<QuantitativeStats>;
+export declare function quantitativeStatsAutorun(self: {
+    featureDensityStatsReady: boolean;
     regionTooLarge: boolean;
+    error: unknown;
     setLoading: (aborter: AbortController) => void;
     setError: (error: unknown) => void;
-    updateStats: (stats: FeatureStats, statsRegion: string) => void;
+    updateQuantitativeStats: (stats: QuantitativeStats, statsRegion: string) => void;
     renderProps: () => Record<string, unknown>;
+    configuration: AnyConfigurationModel;
     adapterConfig: AnyConfigurationModel;
     autoscaleType: string;
     setMessage: (str: string) => void;

package/dist/util.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.round = exports.toP = exports.statsAutorun = exports.getStats = exports.groupBy = exports.getNiceDomain = exports.getOrigin = exports.getScale = exports.YSCALEBAR_LABEL_OFFSET = void 0;
+exports.round = exports.toP = exports.quantitativeStatsAutorun = exports.getQuantitativeStats = exports.groupBy = exports.getNiceDomain = exports.getOrigin = exports.getScale = exports.YSCALEBAR_LABEL_OFFSET = void 0;
 const d3_scale_1 = require("d3-scale");
 const mobx_1 = require("mobx");
 const util_1 = require("@jbrowse/core/util");
@@ -142,7 +142,7 @@ function groupBy(array, predicate) {
     return result;
 }
 exports.groupBy = groupBy;
-async function getStats(self, opts) {
+async function getQuantitativeStats(self, opts) {
     const { rpcManager } = (0, util_1.getSession)(self);
     const nd = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
     const { adapterConfig, autoscaleType } = self;
@@ -158,7 +158,7 @@ async function getStats(self, opts) {
         ...opts,
     };
     if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
-        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalStats', params));
+        const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params));
         const { scoreMin, scoreMean, scoreStdDev } = results;
         // globalsd uses heuristic to avoid unnecessary scoreMin<0
         // if the scoreMin is never less than 0
@@ -173,7 +173,7 @@ async function getStats(self, opts) {
     }
     if (autoscaleType === 'local' || autoscaleType === 'localsd') {
         const { dynamicBlocks, bpPerPx } = (0, util_1.getContainingView)(self);
-        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', {
+        const results = (await rpcManager.call(sessionId, 'WiggleGetMultiRegionQuantitativeStats', {
             ...params,
             regions: dynamicBlocks.contentBlocks.map(region => {
                 const { start, end } = region;
@@ -198,29 +198,30 @@ async function getStats(self, opts) {
             : results;
     }
     if (autoscaleType === 'zscale') {
-        return rpcManager.call(sessionId, 'WiggleGetGlobalStats', params);
+        return rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params);
     }
     throw new Error(`invalid autoscaleType '${autoscaleType}'`);
 }
-exports.getStats = getStats;
-function statsAutorun(self) {
+exports.getQuantitativeStats = getQuantitativeStats;
+function quantitativeStatsAutorun(self) {
     (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
         try {
             const aborter = new AbortController();
             const view = (0, util_1.getContainingView)(self);
             self.setLoading(aborter);
             if (!view.initialized ||
-                !self.estimatedStatsReady ||
-                self.regionTooLarge) {
+                !self.featureDensityStatsReady ||
+                self.regionTooLarge ||
+                self.error) {
                 return;
             }
             const statsRegion = JSON.stringify(view.dynamicBlocks);
-            const wiggleStats = await getStats(self, {
+            const wiggleStats = await getQuantitativeStats(self, {
                 signal: aborter.signal,
                 ...self.renderProps(),
             });
             if ((0, mobx_state_tree_1.isAlive)(self)) {
-                self.updateStats(wiggleStats, statsRegion);
+                self.updateQuantitativeStats(wiggleStats, statsRegion);
             }
         }
         catch (e) {
@@ -231,7 +232,7 @@ function statsAutorun(self) {
         }
     }, { delay: 1000 }));
 }
-exports.statsAutorun = statsAutorun;
+exports.quantitativeStatsAutorun = quantitativeStatsAutorun;
 function toP(s = 0) {
     return +(+s).toPrecision(6);
 }

package/dist/util.js.map

@@ -1 +1 @@
-{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;AAAA,uCAA+D;AAC/D,+BAA8B;AAC9B,6CAI2B;AAE3B,sDAA2D;AAC3D,qDAAsD;AAGtD,+DAA4E;AAI/D,QAAA,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,SAAgB,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,IAAA,sBAAW,GAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,IAAA,wBAAa,GAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AA/BD,4BA+BC;AACD;;;;GAIG;AACH,SAAgB,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAjBD,8BAiBC;AAED;;;;;;;;;;GAUG;AACH,SAAgB,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,IAAA,sBAAW,GAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,IAAA,wBAAa,GAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAzDD,sCAyDC;AAED,SAAgB,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAPD,0BAOC;AAEM,KAAK,UAAU,QAAQ,CAC5B,IAIC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAiB,CAAC,MAAM,UAAU,CAAC,IAAI,CAClD,SAAS,EACT,sBAAsB,EACtB,MAAM,CACP,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,2BAA2B,EAC3B;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAiB,CAAA;QAClB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,sBAAsB,EACtB,MAAM,CACkB,CAAA;KAC3B;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AApFD,4BAoFC;AAED,SAAgB,YAAY,CAAC,IAU5B;IACC,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,mBAAmB;gBACzB,IAAI,CAAC,cAAc,EACnB;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE;gBACvC,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,WAAW,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aAC3C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,IAAA,uBAAgB,EAAC,CAAC,CAAC,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AA/CD,oCA+CC;AAED,SAAgB,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAFD,kBAEC;AAED,SAAgB,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC;AAFD,sBAEC"}
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;AAAA,uCAA+D;AAC/D,+BAA8B;AAC9B,6CAI2B;AAE3B,sDAA2D;AAC3D,qDAAsD;AAGtD,+DAA4E;AAI/D,QAAA,sBAAsB,GAAG,CAAC,CAAA;AAgBvC;;;;;;;;;;GAUG;AACH,SAAgB,QAAQ,CAAC,EACvB,MAAM,GAAG,EAAE,EACX,KAAK,GAAG,EAAE,EACV,SAAS,EACT,UAAU,EACV,QAAQ,GACE;IACV,IAAI,KAAK,CAAA;IACT,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IACzB,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;KAClC;IACD,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,KAAK,GAAG,IAAA,sBAAW,GAAE,CAAA;KACtB;SAAM,IAAI,SAAS,KAAK,KAAK,EAAE;QAC9B,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;QAClB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;KACd;SAAM,IAAI,SAAS,KAAK,UAAU,EAAE;QACnC,KAAK,GAAG,IAAA,wBAAa,GAAE,CAAA;KACxB;SAAM;QACL,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;KACvC;IACD,KAAK,CAAC,MAAM,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IAC5E,KAAK,CAAC,IAAI,EAAE,CAAA;IAEZ,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,KAAK,CAAA;IAClC,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE;QACpD,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;KACjC;IACD,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAA;IACvD,OAAO,KAAK,CAAA;AACd,CAAC;AA/BD,4BA+BC;AACD;;;;GAIG;AACH,SAAgB,SAAS,CAAC,SAAiB,CAAC,oBAAoB;IAC9D,eAAe;IACf,4BAA4B;IAC5B,kCAAkC;IAClC,MAAM;IACN,4BAA4B;IAC5B,eAAe;IACf,MAAM;IACN,wBAAwB;IACxB,IAAI;IACJ,iCAAiC;IACjC,gCAAgC;IAChC,IAAI;IACJ,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,OAAO,CAAC,CAAA;KACT;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAjBD,8BAiBC;AAED;;;;;;;;;;GAUG;AACH,SAAgB,aAAa,CAAC,EAC5B,SAAS,EACT,MAAM,EACN,MAAM,GAKP;IACC,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,GAAG,MAAM,CAAA;IACnC,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;IAEvB,IAAI,SAAS,KAAK,QAAQ,EAAE;QAC1B,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;QACD,IAAI,GAAG,GAAG,CAAC,EAAE;YACX,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,SAAS,KAAK,KAAK,EAAE;QACvB,mDAAmD;QACnD,qEAAqE;QACrE,0DAA0D;QAC1D,uDAAuD;QACvD,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,EAAE;YACxB,GAAG,GAAG,CAAC,CAAA;SACR;KACF;IACD,IAAI,GAAG,KAAK,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE;QAC1C,MAAM,IAAI,KAAK,CAAC,2CAA2C,CAAC,CAAA;KAC7D;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,IAAI,QAAQ,KAAK,SAAS,IAAI,QAAQ,KAAK,MAAM,CAAC,SAAS,EAAE;QAC3D,GAAG,GAAG,QAAQ,CAAA;KACf;IACD,MAAM,YAAY,GAAG,CAAC,IAAY,EAAE,EAAE;QACpC,IAAI,IAAI,KAAK,QAAQ,EAAE;YACrB,OAAO,IAAA,sBAAW,GAAE,CAAA;SACrB;QACD,IAAI,IAAI,KAAK,KAAK,EAAE;YAClB,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;YACxB,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACb,OAAO,KAAK,CAAA;SACb;QACD,IAAI,IAAI,KAAK,UAAU,EAAE;YACvB,OAAO,IAAA,wBAAa,GAAE,CAAA;SACvB;QACD,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAA;IAChD,CAAC,CAAA;IACD,MAAM,KAAK,GAAG,YAAY,CAAC,SAAS,CAAC,CAAA;IAErC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;IACxB,KAAK,CAAC,IAAI,EAAE,CAAA;IACZ,OAAO,KAAK,CAAC,MAAM,EAAsB,CAAA;AAC3C,CAAC;AAzDD,sCAyDC;AAED,SAAgB,OAAO,CAAI,KAAU,EAAE,SAA2B;;IAChE,MAAM,MAAM,GAAG,EAA4B,CAAA;IAC3C,KAAK,MAAM,KAAK,IAAI,KAAK,EAAE;QACzB,MAAM,KAAK,GAAG,CAAC,MAAM,MAAC,SAAS,CAAC,KAAK,CAAC,MAAvB,MAAM,OAAuB,EAAE,EAAC,CAAA;QAC/C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;KAClB;IACD,OAAO,MAAM,CAAA;AACf,CAAC;AAPD,0BAOC;AAEM,KAAK,UAAU,oBAAoB,CACxC,IAKC,EACD,IAIC;IAED,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,EAAE,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,WAAW,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;IAC7C,MAAM,SAAS,GAAG,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IACvC,MAAM,MAAM,GAAG;QACb,SAAS;QACT,aAAa;QACb,cAAc,EAAE,CAAC,OAAe,EAAE,EAAE;YAClC,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;aACzB;QACH,CAAC;QACD,GAAG,IAAI;KACR,CAAA;IAED,IAAI,aAAa,KAAK,QAAQ,IAAI,aAAa,KAAK,UAAU,EAAE;QAC9D,MAAM,OAAO,GAAsB,CAAC,MAAM,UAAU,CAAC,IAAI,CACvD,SAAS,EACT,kCAAkC,EAClC,MAAM,CACP,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACpD,0DAA0D;QAC1D,uCAAuC;QACvC,iDAAiD;QACjD,OAAO,aAAa,KAAK,UAAU;YACjC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,OAAO,IAAI,aAAa,KAAK,SAAS,EAAE;QAC5D,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAQ,CAAA;QACjE,MAAM,OAAO,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CACpC,SAAS,EACT,uCAAuC,EACvC;YACE,GAAG,MAAM;YACT,OAAO,EAAE,aAAa,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAChD,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;gBAC7B,OAAO;oBACL,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC;oBACrC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC;oBACxB,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;iBACpB,CAAA;YACH,CAAC,CAAC;YACF,OAAO;SACR,CACF,CAAsB,CAAA;QACvB,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAEpD,gEAAgE;QAChE,iEAAiE;QACjE,gBAAgB;QAChB,OAAO,aAAa,KAAK,SAAS;YAChC,CAAC,CAAC;gBACE,GAAG,OAAO;gBACV,QAAQ,EAAE,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,EAAE,GAAG,WAAW;gBAC1D,QAAQ,EAAE,SAAS,GAAG,EAAE,GAAG,WAAW;aACvC;YACH,CAAC,CAAC,OAAO,CAAA;KACZ;IACD,IAAI,aAAa,KAAK,QAAQ,EAAE;QAC9B,OAAO,UAAU,CAAC,IAAI,CACpB,SAAS,EACT,kCAAkC,EAClC,MAAM,CACuB,CAAA;KAChC;IACD,MAAM,IAAI,KAAK,CAAC,0BAA0B,aAAa,GAAG,CAAC,CAAA;AAC7D,CAAC;AArFD,oDAqFC;AAED,SAAgB,wBAAwB,CAAC,IAexC;IACC,IAAA,6BAAW,EACT,IAAI,EACJ,IAAA,cAAO,EACL,KAAK,IAAI,EAAE;QACT,IAAI;YACF,MAAM,OAAO,GAAG,IAAI,eAAe,EAAE,CAAA;YACrC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,IAAI,CAAQ,CAAA;YAC3C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;YAExB,IACE,CAAC,IAAI,CAAC,WAAW;gBACjB,CAAC,IAAI,CAAC,wBAAwB;gBAC9B,IAAI,CAAC,cAAc;gBACnB,IAAI,CAAC,KAAK,EACV;gBACA,OAAM;aACP;YACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;YAEtD,MAAM,WAAW,GAAG,MAAM,oBAAoB,CAAC,IAAI,EAAE;gBACnD,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,GAAG,IAAI,CAAC,WAAW,EAAE;aACtB,CAAC,CAAA;YAEF,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACjB,IAAI,CAAC,uBAAuB,CAAC,WAAW,EAAE,WAAW,CAAC,CAAA;aACvD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,IAAI,CAAC,IAAA,uBAAgB,EAAC,CAAC,CAAC,IAAI,IAAA,yBAAO,EAAC,IAAI,CAAC,EAAE;gBACzC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;aACjB;SACF;IACH,CAAC,EACD,EAAE,KAAK,EAAE,IAAI,EAAE,CAChB,CACF,CAAA;AACH,CAAC;AArDD,4DAqDC;AAED,SAAgB,GAAG,CAAC,CAAC,GAAG,CAAC;IACvB,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;AAC7B,CAAC;AAFD,kBAEC;AAED,SAAgB,KAAK,CAAC,KAAa;IACjC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,GAAG,CAAC,GAAG,GAAG,CAAA;AACtC,CAAC;AAFD,sBAEC"}

package/esm/BigWigAdapter/BigWigAdapter.d.ts

@@ -15,9 +15,9 @@ export default class BigWigAdapter extends BaseFeatureDataAdapter {
     }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;
     refIdToName(refId: number): Promise<any>;
-    getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;
+    getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").QuantitativeStats>;
     getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
-    estimateRegionsStats(_regions: Region[]): Promise<{
+    getMultiRegionFeatureDensityStats(_regions: Region[]): Promise<{
         featureDensity: number;
     }>;
     freeResources(): void;

package/esm/BigWigAdapter/BigWigAdapter.js

@@ -3,8 +3,8 @@ import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter
 import { openLocation } from '@jbrowse/core/util/io';
 import { updateStatus } from '@jbrowse/core/util';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
-import { rectifyStats } from '@jbrowse/core/util/stats';
-export default class BigWigAdapter extends BaseFeatureDataAdapter {
+import { rectifyStats, } from '@jbrowse/core/util/stats';
+class BigWigAdapter extends BaseFeatureDataAdapter {
     async setupPre(opts) {
         const { statusCallback = () => { } } = opts || {};
         const bigwig = new BigWig({
@@ -67,7 +67,7 @@ export default class BigWigAdapter extends BaseFeatureDataAdapter {
         }, signal);
     }
     // always render bigwig instead of calculating a feature density for it
-    async estimateRegionsStats(_regions) {
+    async getMultiRegionFeatureDensityStats(_regions) {
         return { featureDensity: 0 };
     }
     freeResources() { }
@@ -77,4 +77,5 @@ BigWigAdapter.capabilities = [
     'hasLocalStats',
     'hasGlobalStats',
 ];
+export default BigWigAdapter;
 //# sourceMappingURL=BigWigAdapter.js.map

package/esm/BigWigAdapter/BigWigAdapter.js.map

@@ -1 +1 @@
-{"version":3,"file":"BigWigAdapter.js","sourceRoot":"","sources":["../../src/BigWigAdapter/BigWigAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAClC,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,YAAY,EAAW,MAAM,oBAAoB,CAAA;AAC1D,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,YAAY,EAA2B,MAAM,0BAA0B,CAAA;AAMhF,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,sBAAsB;IAUvD,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,MAAM,GAAG,IAAI,MAAM,CAAC;YACxB,UAAU,EAAE,YAAY,CACtB,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,EAC9B,IAAI,CAAC,aAAa,CACnB;SACF,CAAC,CAAA;QACF,MAAM,MAAM,GAAG,MAAM,YAAY,CAC/B,2BAA2B,EAC3B,cAAc,EACd,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,CAC7B,CAAA;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACvC,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,KAAa;;QACpC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,OAAO,MAAA,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,0CAAE,IAAI,CAAA;IACzC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,YAAY,CAAC,MAAM,CAAC,YAAuC,CAAC,CAAA;IACrE,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QACtC,MAAM,EACJ,OAAO,GAAG,CAAC,EACX,MAAM,EACN,UAAU,GAAG,CAAC,EACd,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,IAAI,CAAA;QACR,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,cAAc,CAAC,yBAAyB,CAAC,CAAA;YACzC,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;YACrC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACzC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBAC1D,GAAG,IAAI;gBACP,YAAY,EAAE,OAAO,GAAG,UAAU;aACnC,CAAC,CAAA;YAEF,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE;gBACxB,IAAI,MAAM,EAAE;oBACV,mBAAmB;oBACnB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;iBACrB;gBACD,MAAM,QAAQ,GAAG,GAAG,MAAM,IAAI,MAAM,CAAC,OAAO,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;gBACxE,mBAAmB;gBACnB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;gBACtB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;gBACxB,QAAQ,CAAC,IAAI,CAAC;oBACZ,mBAAmB;oBACnB,GAAG,EAAE,CAAC,GAAW,EAAE,EAAE,CAAE,IAAgC,CAAC,GAAG,CAAC;oBAC5D,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ;oBAClB,mBAAmB;oBACnB,MAAM,EAAE,GAAG,EAAE,CAAC,IAAI;iBACnB,CAAC,CAAA;aACH;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,oBAAoB,CAAC,QAAkB;QAC3C,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAEM,aAAa,KAAU,CAAC;;AA1FjB,0BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA"}
+{"version":3,"file":"BigWigAdapter.js","sourceRoot":"","sources":["../../src/BigWigAdapter/BigWigAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAClC,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,YAAY,EAAW,MAAM,oBAAoB,CAAA;AAC1D,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EACL,YAAY,GAEb,MAAM,0BAA0B,CAAA;AAMjC,MAAqB,aAAc,SAAQ,sBAAsB;IAUvD,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,MAAM,GAAG,IAAI,MAAM,CAAC;YACxB,UAAU,EAAE,YAAY,CACtB,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,EAC9B,IAAI,CAAC,aAAa,CACnB;SACF,CAAC,CAAA;QACF,MAAM,MAAM,GAAG,MAAM,YAAY,CAC/B,2BAA2B,EAC3B,cAAc,EACd,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,CAC7B,CAAA;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,IAAkB;QACzC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACvC,CAAC;IAEM,KAAK,CAAC,WAAW,CAAC,KAAa;;QACpC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACrC,OAAO,MAAA,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,0CAAE,IAAI,CAAA;IACzC,CAAC;IAEM,KAAK,CAAC,cAAc,CAAC,IAAkB;QAC5C,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,YAAY,CAAC,MAAM,CAAC,YAA4C,CAAC,CAAA;IAC1E,CAAC;IAEM,WAAW,CAAC,MAAc,EAAE,OAAsB,EAAE;QACzD,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;QACtC,MAAM,EACJ,OAAO,GAAG,CAAC,EACX,MAAM,EACN,UAAU,GAAG,CAAC,EACd,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,IAAI,CAAA;QACR,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,cAAc,CAAC,yBAAyB,CAAC,CAAA;YACzC,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;YACrC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACzC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE;gBAC1D,GAAG,IAAI;gBACP,YAAY,EAAE,OAAO,GAAG,UAAU;aACnC,CAAC,CAAA;YAEF,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE;gBACxB,IAAI,MAAM,EAAE;oBACV,mBAAmB;oBACnB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;iBACrB;gBACD,MAAM,QAAQ,GAAG,GAAG,MAAM,IAAI,MAAM,CAAC,OAAO,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;gBACxE,mBAAmB;gBACnB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;gBACtB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;gBACxB,QAAQ,CAAC,IAAI,CAAC;oBACZ,mBAAmB;oBACnB,GAAG,EAAE,CAAC,GAAW,EAAE,EAAE,CAAE,IAAgC,CAAC,GAAG,CAAC;oBAC5D,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ;oBAClB,mBAAmB;oBACnB,MAAM,EAAE,GAAG,EAAE,CAAC,IAAI;iBACnB,CAAC,CAAA;aACH;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,uEAAuE;IACvE,KAAK,CAAC,iCAAiC,CAAC,QAAkB;QACxD,OAAO,EAAE,cAAc,EAAE,CAAC,EAAE,CAAA;IAC9B,CAAC;IAEM,aAAa,KAAU,CAAC;;AA1FjB,0BAAY,GAAG;IAC3B,eAAe;IACf,eAAe;IACf,gBAAgB;CACjB,CAAA;eARkB,aAAa"}

package/esm/BigWigAdapter/configSchema.d.ts

@@ -1,2 +1,21 @@
-declare const BigWigAdapter: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const BigWigAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    bigWigLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+    };
+    /**
+     * #slot
+     */
+    source: {
+        type: string;
+        defaultValue: string;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default BigWigAdapter;

package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const ConfirmDialog: ({ tracks, onClose, }: {
     tracks: AnyConfigurationModel[];

package/esm/DensityRenderer/configSchema.d.ts

@@ -1,2 +1,34 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/esm/LinePlotRenderer/configSchema.d.ts

@@ -1,2 +1,45 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    displayCrossHatches: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    color: {
+        type: string;
+        description: string;
+        defaultValue: string; /**
+         * #baseConfiguration
+         */
+    };
+    posColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    negColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    clipColor: {
+        type: string;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivot: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    bicolorPivotValue: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
 export default configSchema;

package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare function SetColorDialog({ model, handleClose, }: {
     model: {
         color?: string;

package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { WiggleDisplayModel } from '../models/model';
 declare const LinearWiggleDisplay: (props: {
     model: WiggleDisplayModel;

package/esm/LinearWiggleDisplay/models/configSchema.d.ts

@@ -1,2 +1,99 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    autoscale: {
+        type: string;
+        defaultValue: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    minimalTicks: {
+        type: string;
+        defaultValue: boolean;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    minScore: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    maxScore: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    numStdDev: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    scaleType: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        description: string;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    inverted: {
+        type: string;
+        description: string;
+        defaultValue: boolean;
+    };
+    /**
+     * #slot
+     */
+    defaultRendering: {
+        type: string;
+        model: import("mobx-state-tree").ISimpleType<string>;
+        defaultValue: string;
+    };
+    /**
+     * #slot
+     */
+    renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        DensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        XYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        LinePlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;