@jbrowse/plugin-wiggle 2.2.1 → 2.3.0

package/esm/MultiLinearWiggleDisplay/models/model.js

@@ -15,7 +15,7 @@ import Tooltip from '../components/Tooltip';
 import { StatBars } from '../components/WiggleDisplayComponent';
 const randomColor = () => '#000000'.replace(/0/g, () => (~~(Math.random() * 16)).toString(16));
 // lazt components
-const SetMinMaxDlg = lazy(() => import('../components/SetMinMaxDialog'));
+const SetMinMaxDlg = lazy(() => import('../../shared/SetMinMaxDialog'));
 const SetColorDlg = lazy(() => import('../components/SetColorDialog'));
 // using a map because it preserves order
 const rendererTypes = new Map([
@@ -49,9 +49,8 @@ const stateModelFactory = (pluginManager, configSchema) => types
     }), {}),
 }))
     .volatile(() => ({
-    statsReady: false,
     message: undefined,
-    stats: { scoreMin: 0, scoreMax: 50 },
+    stats: undefined,
     statsRegion: undefined,
     statsFetchInProgress: undefined,
     featureUnderMouseVolatile: undefined,
@@ -67,10 +66,12 @@ const stateModelFactory = (pluginManager, configSchema) => types
     updateStats(stats) {
         const { scoreMin, scoreMax } = stats;
         const EPSILON = 0.000001;
-        if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+        if (!self.stats) {
+            self.stats = { scoreMin, scoreMax };
+        }
+        else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
             Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
             self.stats = { scoreMin, scoreMax };
-            self.statsReady = true;
         }
     },
     setSources(sources) {
@@ -277,6 +278,9 @@ const stateModelFactory = (pluginManager, configSchema) => types
         },
         get domain() {
             const { stats, scaleType, minScore, maxScore } = self;
+            if (!stats) {
+                return undefined;
+            }
             const { scoreMin, scoreMax } = stats;
             const ret = getNiceDomain({
                 domain: [scoreMin, scoreMax],
@@ -326,6 +330,9 @@ const stateModelFactory = (pluginManager, configSchema) => types
     .views(self => ({
     get ticks() {
         const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
+        if (!domain) {
+            return undefined;
+        }
         const offset = isMultiRow ? 0 : YSCALEBAR_LABEL_OFFSET;
         const ticks = axisPropsFromTickScale(getScale({
             scaleType,
@@ -359,10 +366,10 @@ const stateModelFactory = (pluginManager, configSchema) => types
     return {
         renderProps() {
             const superProps = superRenderProps();
-            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, sources, statsReady, ticks, rendererConfig: config, } = self;
+            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, stats, sources, ticks, rendererConfig: config, } = self;
             return {
                 ...superProps,
-                notReady: superProps.notReady || !sources || !statsReady,
+                notReady: superProps.notReady || !sources || !stats,
                 displayModel: self,
                 config,
                 displayCrossHatches,
@@ -557,7 +564,7 @@ const stateModelFactory = (pluginManager, configSchema) => types
             }));
         },
         async renderSvg(opts) {
-            await when(() => self.statsReady && !!self.regionCannotBeRenderedText);
+            await when(() => !!self.stats && !!self.regionCannotBeRenderedText);
             const { offsetPx } = getContainingView(self);
             return (React.createElement(React.Fragment, null,
                 React.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),

package/esm/MultiLinearWiggleDisplay/models/model.js.map

@@ -1 +1 @@
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package/esm/MultiQuantitativeTrack/index.js

@@ -6,6 +6,7 @@ export default (pluginManager) => {
         const configSchema = configSchemaF(pluginManager);
         return new TrackType({
             name: 'MultiQuantitativeTrack',
+            displayName: 'Multi-quantitative track',
             configSchema,
             stateModel: createBaseTrackModel(pluginManager, 'MultiQuantitativeTrack', configSchema),
         });

package/esm/MultiQuantitativeTrack/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAErE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,aAAa,CAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAErE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,aAAa,CAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,WAAW,EAAE,0BAA0B;YACvC,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/MultiWiggleAdapter/index.js

@@ -3,12 +3,16 @@ import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
 export default (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'MultiWiggleAdapter',
+        displayName: 'Multi-wiggle adapter',
         configSchema,
         adapterCapabilities: [
             'hasResolution',
             'hasLocalStats',
             'hasGlobalStats',
         ],
+        adapterMetadata: {
+            hiddenFromGUI: true,
+        },
         getAdapterClass: () => import('./MultiWiggleAdapter').then(r => r.default),
     }));
 };

package/esm/MultiWiggleAdapter/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAGzE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,sBAAsB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,WAAW,MAAM,iDAAiD,CAAA;AAGzE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,WAAW,EAAE,sBAAsB;QACnC,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,sBAAsB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/esm/QuantitativeTrack/index.js

@@ -6,6 +6,7 @@ export default (pluginManager) => {
         const configSchema = configSchemaF(pluginManager);
         return new TrackType({
             name: 'QuantitativeTrack',
+            displayName: 'Quantitative track',
             configSchema,
             stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
         });

package/esm/QuantitativeTrack/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAErE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,aAAa,CAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,4CAA4C,CAAA;AACjF,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAErE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,aAAa,CAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,WAAW,EAAE,oBAAoB;YACjC,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/WiggleRendering.js

@@ -16,7 +16,7 @@ function WiggleRendering(props) {
         const clientBp = region.start + bpPerPx * px;
         let featureUnderMouse;
         for (const feature of features.values()) {
-            // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
+            // bpPerPx added to the end to accommodate "reduced features" (one feature per px)
             if (clientBp <= feature.get('end') + bpPerPx &&
                 clientBp >= feature.get('start')) {
                 featureUnderMouse = feature;

package/esm/WiggleRendering.js.map

@@ -1 +1 @@
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package/esm/drawxy.js

@@ -1,6 +1,7 @@
 import { readConfObject, } from '@jbrowse/core/configuration';
 import { clamp, featureSpanPx } from '@jbrowse/core/util';
 import { getOrigin, getScale } from './util';
+// avoid drawing negative width features for SVG exports
 function fillRectCtx(x, y, width, height, ctx, color) {
     if (width < 0) {
         x += width;

package/esm/drawxy.js.map

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package/esm/index.d.ts

@@ -184,10 +184,10 @@ export default class WigglePlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -255,12 +255,11 @@ export default class WigglePlugin extends Plugin {
                     overrideHeight: number;
                 }): Promise<JSX.Element>;
             } & {
-                statsReady: boolean;
                 message: string | undefined;
                 stats: {
                     scoreMin: number;
                     scoreMax: number;
-                };
+                } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
                 updateStats(stats: {
@@ -301,14 +300,14 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly filled: any;
                 readonly summaryScoreModeSetting: any;
-                readonly domain: number[];
+                readonly domain: number[] | undefined;
                 readonly needsScalebar: boolean;
                 readonly scaleOpts: {
-                    domain: number[];
+                    domain: number[] | undefined;
                     stats: {
                         scoreMin: number;
                         scoreMax: number;
-                    };
+                    } | undefined;
                     autoscaleType: any;
                     scaleType: any;
                     inverted: any;
@@ -322,7 +321,7 @@ export default class WigglePlugin extends Plugin {
                     values: number[];
                     format: (d: import("d3-scale").NumberValue) => string;
                     position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-                };
+                } | undefined;
                 readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
@@ -481,10 +480,10 @@ export default class WigglePlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -552,12 +551,11 @@ export default class WigglePlugin extends Plugin {
                     overrideHeight: number;
                 }): Promise<JSX.Element>;
             } & {
-                statsReady: boolean;
                 message: string | undefined;
                 stats: {
                     scoreMin: number;
                     scoreMax: number;
-                };
+                } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
                 updateStats(stats: {
@@ -598,14 +596,14 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly filled: any;
                 readonly summaryScoreModeSetting: any;
-                readonly domain: number[];
+                readonly domain: number[] | undefined;
                 readonly needsScalebar: boolean;
                 readonly scaleOpts: {
-                    domain: number[];
+                    domain: number[] | undefined;
                     stats: {
                         scoreMin: number;
                         scoreMax: number;
-                    };
+                    } | undefined;
                     autoscaleType: any;
                     scaleType: any;
                     inverted: any;
@@ -619,7 +617,7 @@ export default class WigglePlugin extends Plugin {
                     values: number[];
                     format: (d: import("d3-scale").NumberValue) => string;
                     position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-                };
+                } | undefined;
                 readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
@@ -673,9 +671,9 @@ export default class WigglePlugin extends Plugin {
         }) => JSX.Element;
         XYPlotRenderer: typeof XYPlotRenderer;
         WiggleBaseRenderer: typeof WiggleBaseRenderer;
+        linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
         xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         utils: typeof utils;
-        linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
     };
 }
 export * from './util';

package/esm/index.js

@@ -32,9 +32,9 @@ export default class WigglePlugin extends Plugin {
             XYPlotRendererReactComponent,
             XYPlotRenderer,
             WiggleBaseRenderer,
+            linearWiggleDisplayModelFactory,
             xyPlotRendererConfigSchema,
             utils,
-            linearWiggleDisplayModelFactory,
         };
     }
     install(pm) {

package/esm/index.js.map

@@ -1 +1 @@
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package/esm/shared/SetMinMaxDialog.js

@@ -0,0 +1,27 @@
+import React, { useState } from 'react';
+import { Button, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
+export default function SetMinMaxDlg(props) {
+    const { model, handleClose } = props;
+    const { minScore, maxScore, scaleType } = model;
+    const [min, setMin] = useState(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
+    const [max, setMax] = useState(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
+    const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+        ? +max > +min
+        : true;
+    const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set min/max score for track" },
+        React.createElement(DialogContent, null,
+            React.createElement(Typography, null, "Enter min/max score: "),
+            !ok ? (React.createElement(Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
+            !logOk ? (React.createElement(Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
+            React.createElement(TextField, { value: min, onChange: event => setMin(event.target.value), placeholder: "Enter min score" }),
+            React.createElement(TextField, { value: max, onChange: event => setMax(event.target.value), placeholder: "Enter max score" })),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
+                    model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
+                    model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                    handleClose();
+                } }, "Submit"))));
+}
+//# sourceMappingURL=SetMinMaxDialog.js.map

package/esm/shared/SetMinMaxDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SetMinMaxDialog.js","sourceRoot":"","sources":["../../src/shared/SetMinMaxDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,MAAM,CAAC,OAAO,UAAU,YAAY,CAAC,KASpC;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAE/C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IACD,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IAED,MAAM,EAAE,GACN,GAAG,KAAK,EAAE,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;QACpE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG;QACb,CAAC,CAAC,IAAI,CAAA;IAEV,MAAM,KAAK,GACT,SAAS,KAAK,KAAK,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAE5E,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,6BAA6B;QACpE,oBAAC,aAAa;YACZ,oBAAC,UAAU,gCAAmC;YAC7C,CAAC,EAAE,CAAC,CAAC,CAAC,CACL,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,0CAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAEP,CAAC,KAAK,CAAC,CAAC,CAAC,CACR,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,uDAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B;YACF,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B,CACY;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,EACzB,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "2.2.1",
+  "version": "2.3.0",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -27,7 +27,7 @@
     "build": "npm-run-all build:*",
     "test": "cd ../..; jest plugins/wiggle",
     "prepublishOnly": "yarn test",
-    "prepack": "yarn build; yarn useDist",
+    "prepack": "yarn build && yarn useDist",
     "postpack": "yarn useSrc",
     "useDist": "node ../../scripts/useDist.js",
     "useSrc": "node ../../scripts/useSrc.js",
@@ -59,10 +59,9 @@
     "mobx": "^6.0.0",
     "mobx-react": "^7.0.0",
     "mobx-state-tree": "^5.0.0",
-    "prop-types": "^15.0.0",
     "react": ">=16.8.0",
     "rxjs": "^6.0.0",
-    "tss-react": "^3.0.0"
+    "tss-react": "^4.0.0"
   },
   "publishConfig": {
     "access": "public"
@@ -70,5 +69,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "896d175c5d9345049faea8e1155f243c912aac42"
+  "gitHead": "a85b280a8af4d1a11e81ab42913f5f6049e6e580"
 }

package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap

@@ -15,12 +15,12 @@ exports[`adapter can fetch features from volvox.bw adapter can fetch stats from
 
 exports[`adapter can fetch features from volvox.bw get local stats 1`] = `
 {
-  "basesCovered": 30100,
+  "basesCovered": 30000,
   "featureCount": 30000,
-  "featureDensity": 0.9966777408637874,
+  "featureDensity": 1,
   "scoreMax": 38,
   "scoreMean": 19.297233333333335,
-  "scoreMin": 5,
+  "scoreMin": 0,
   "scoreStdDev": 4.380942680236127,
   "scoreSum": 578917,
   "scoreSumSquares": 11747257,

package/src/BigWigAdapter/index.ts

@@ -7,6 +7,7 @@ export default (pluginManager: PluginManager) => {
     () =>
       new AdapterType({
         name: 'BigWigAdapter',
+        displayName: 'BigWig adapter',
         configSchema,
         adapterCapabilities: [
           'hasResolution',

package/src/LinearWiggleDisplay/components/SetColorDialog.tsx

@@ -2,28 +2,15 @@ import React, { useState } from 'react'
 import { observer } from 'mobx-react'
 import {
   Button,
-  Dialog,
   DialogContent,
   DialogActions,
-  DialogTitle,
   FormControlLabel,
-  IconButton,
   Radio,
   Typography,
 } from '@mui/material'
-import { makeStyles } from 'tss-react/mui'
-import CloseIcon from '@mui/icons-material/Close'
+import { Dialog } from '@jbrowse/core/ui'
 import { ColorPicker } from '@jbrowse/core/ui/ColorPicker'
 
-const useStyles = makeStyles()(theme => ({
-  closeButton: {
-    position: 'absolute',
-    right: theme.spacing(1),
-    top: theme.spacing(1),
-    color: theme.palette.grey[500],
-  },
-}))
-
 function SetColorDialog({
   model,
   handleClose,
@@ -38,23 +25,16 @@ function SetColorDialog({
   }
   handleClose: () => void
 }) {
-  const { classes } = useStyles()
   const [posneg, setPosNeg] = useState(false)
 
   return (
-    <Dialog open onClose={handleClose}>
-      <DialogTitle>
-        Select either an overall color, or the positive/negative colors. Note
-        that density renderers only work properly with positive/negative colors
-        <IconButton
-          aria-label="close"
-          className={classes.closeButton}
-          onClick={handleClose}
-        >
-          <CloseIcon />
-        </IconButton>
-      </DialogTitle>
+    <Dialog open onClose={handleClose} title="Set color">
       <DialogContent>
+        <Typography>
+          Select either an overall color, or the positive/negative colors. Note
+          that density renderers only work properly with positive/negative
+          colors
+        </Typography>
         <FormControlLabel
           checked={!posneg}
           onClick={() => setPosNeg(false)}

package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx

@@ -1,4 +1,5 @@
 import React from 'react'
+import { observer } from 'mobx-react'
 import {
   measureText,
   getContainingView,
@@ -9,7 +10,8 @@ import {
   BaseLinearDisplayComponent,
   LinearGenomeViewModel,
 } from '@jbrowse/plugin-linear-genome-view'
-import { observer } from 'mobx-react'
+
+// locals
 import { WiggleDisplayModel } from '../models/model'
 import YScaleBar from './YScaleBar'