npm - @jbrowse/plugin-wiggle - Versions diffs - 2.2.1 → 2.3.0 - Mend

@jbrowse/plugin-wiggle 2.2.1 → 2.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (109) hide show

package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED Viewed

@@ -137,10 +137,10 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     reload(): void;
 } & {
     currBpPerPx: number;
+    scrollTop: number;
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: Feature | undefined;
-    scrollTop: number;
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
@@ -208,12 +208,11 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         overrideHeight: number;
     }): Promise<JSX.Element>;
 } & {
-    statsReady: boolean;
     message: string | undefined;
     stats: {
         scoreMin: number;
         scoreMax: number;
-    };
+    } | undefined;
     statsRegion: string | undefined;
     statsFetchInProgress: AbortController | undefined;
     featureUnderMouseVolatile: Feature | undefined;
@@ -275,14 +274,14 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
 } & {
     readonly filled: boolean;
     readonly summaryScoreModeSetting: string;
-    readonly domain: number[];
+    readonly domain: number[] | undefined;
     readonly scaleOpts: {
         autoscaleType: string;
-        domain: number[];
+        domain: number[] | undefined;
         stats: {
             scoreMin: number;
             scoreMax: number;
-        };
+        } | undefined;
         scaleType: string;
         inverted: any;
     };
@@ -297,7 +296,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
         values: number[];
         format: (d: import("d3-scale").NumberValue) => string;
         position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    };
+    } | undefined;
     readonly colors: string[];
     readonly adapterCapabilities: string[];
 } & {

package/dist/MultiLinearWiggleDisplay/models/model.js CHANGED Viewed

@@ -43,7 +43,7 @@ const Tooltip_1 = __importDefault(require("../components/Tooltip"));
 const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
 const randomColor = () => '#000000'.replace(/0/g, () => (~~(Math.random() * 16)).toString(16));
 // lazt components
-const SetMinMaxDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetMinMaxDialog'))));
+const SetMinMaxDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../shared/SetMinMaxDialog'))));
 const SetColorDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetColorDialog'))));
 // using a map because it preserves order
 const rendererTypes = new Map([
@@ -77,9 +77,8 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     }), {}),
 }))
     .volatile(() => ({
-    statsReady: false,
     message: undefined,
-    stats: { scoreMin: 0, scoreMax: 50 },
+    stats: undefined,
     statsRegion: undefined,
     statsFetchInProgress: undefined,
     featureUnderMouseVolatile: undefined,
@@ -95,10 +94,12 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     updateStats(stats) {
         const { scoreMin, scoreMax } = stats;
         const EPSILON = 0.000001;
-        if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
+        if (!self.stats) {
+            self.stats = { scoreMin, scoreMax };
+        }
+        else if (Math.abs(self.stats.scoreMax - scoreMax) > EPSILON ||
             Math.abs(self.stats.scoreMin - scoreMin) > EPSILON) {
             self.stats = { scoreMin, scoreMax };
-            self.statsReady = true;
         }
     },
     setSources(sources) {
@@ -305,6 +306,9 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
         },
         get domain() {
             const { stats, scaleType, minScore, maxScore } = self;
+            if (!stats) {
+                return undefined;
+            }
             const { scoreMin, scoreMax } = stats;
             const ret = (0, util_2.getNiceDomain)({
                 domain: [scoreMin, scoreMax],
@@ -354,6 +358,9 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     .views(self => ({
     get ticks() {
         const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
+        if (!domain) {
+            return undefined;
+        }
         const offset = isMultiRow ? 0 : util_2.YSCALEBAR_LABEL_OFFSET;
         const ticks = (0, react_d3_axis_mod_1.axisPropsFromTickScale)((0, util_2.getScale)({
             scaleType,
@@ -387,10 +394,10 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     return {
         renderProps() {
             const superProps = superRenderProps();
-            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, sources, statsReady, ticks, rendererConfig: config, } = self;
+            const { displayCrossHatches, filters, height, resolution, rpcDriverName, scaleOpts, stats, sources, ticks, rendererConfig: config, } = self;
             return {
                 ...superProps,
-                notReady: superProps.notReady || !sources || !statsReady,
+                notReady: superProps.notReady || !sources || !stats,
                 displayModel: self,
                 config,
                 displayCrossHatches,
@@ -585,7 +592,7 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
             }));
         },
         async renderSvg(opts) {
-            await (0, mobx_1.when)(() => self.statsReady && !!self.regionCannotBeRenderedText);
+            await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
             const { offsetPx } = (0, util_1.getContainingView)(self);
             return (react_1.default.createElement(react_1.default.Fragment, null,
                 react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),

package/dist/MultiLinearWiggleDisplay/models/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MultiQuantitativeTrack/index.js CHANGED Viewed

@@ -11,6 +11,7 @@ exports.default = (pluginManager) => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
         return new TrackType_1.default({
             name: 'MultiQuantitativeTrack',
+            displayName: 'Multi-quantitative track',
             configSchema,
             stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
         });

package/dist/MultiQuantitativeTrack/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,WAAW,EAAE,0BAA0B;YACvC,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/MultiWiggleAdapter/index.js CHANGED Viewed

@@ -31,12 +31,16 @@ const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTyp
 exports.default = (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType_1.default({
         name: 'MultiWiggleAdapter',
+        displayName: 'Multi-wiggle adapter',
         configSchema: configSchema_1.default,
         adapterCapabilities: [
             'hasResolution',
             'hasLocalStats',
             'hasGlobalStats',
         ],
+        adapterMetadata: {
+            hiddenFromGUI: true,
+        },
         getAdapterClass: () => Promise.resolve().then(() => __importStar(require('./MultiWiggleAdapter'))).then(r => r.default),
     }));
 };

package/dist/MultiWiggleAdapter/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,kGAAyE;AAGzE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,sBAAsB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiWiggleAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,kGAAyE;AAGzE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,qBAAW,CAAC;QACd,IAAI,EAAE,oBAAoB;QAC1B,WAAW,EAAE,sBAAsB;QACnC,YAAY,EAAZ,sBAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE;YACf,aAAa,EAAE,IAAI;SACpB;QACD,eAAe,EAAE,GAAG,EAAE,CACpB,kDAAO,sBAAsB,IAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtD,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/QuantitativeTrack/index.js CHANGED Viewed

@@ -11,6 +11,7 @@ exports.default = (pluginManager) => {
         const configSchema = (0, configSchema_1.default)(pluginManager);
         return new TrackType_1.default({
             name: 'QuantitativeTrack',
+            displayName: 'Quantitative track',
             configSchema,
             stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'QuantitativeTrack', configSchema),
         });

package/dist/QuantitativeTrack/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,uEAAiF;AACjF,8FAAqE;AAErE,kEAA0C;AAE1C,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QACjD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,WAAW,EAAE,oBAAoB;YACjC,YAAY;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/WiggleRendering.js CHANGED Viewed

@@ -41,7 +41,7 @@ function WiggleRendering(props) {
         const clientBp = region.start + bpPerPx * px;
         let featureUnderMouse;
         for (const feature of features.values()) {
-            // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
+            // bpPerPx added to the end to accommodate "reduced features" (one feature per px)
             if (clientBp <= feature.get('end') + bpPerPx &&
                 clientBp >= feature.get('start')) {
                 featureUnderMouse = feature;

package/dist/WiggleRendering.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/drawxy.js CHANGED Viewed

@@ -4,6 +4,7 @@ exports.drawDensity = exports.drawLine = exports.drawXY = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const util_2 = require("./util");
+// avoid drawing negative width features for SVG exports
 function fillRectCtx(x, y, width, height, ctx, color) {
     if (width < 0) {
         x += width;

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package/dist/index.d.ts CHANGED Viewed

@@ -184,10 +184,10 @@ export default class WigglePlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -255,12 +255,11 @@ export default class WigglePlugin extends Plugin {
                     overrideHeight: number;
                 }): Promise<JSX.Element>;
             } & {
-                statsReady: boolean;
                 message: string | undefined;
                 stats: {
                     scoreMin: number;
                     scoreMax: number;
-                };
+                } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
                 updateStats(stats: {
@@ -301,14 +300,14 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly filled: any;
                 readonly summaryScoreModeSetting: any;
-                readonly domain: number[];
+                readonly domain: number[] | undefined;
                 readonly needsScalebar: boolean;
                 readonly scaleOpts: {
-                    domain: number[];
+                    domain: number[] | undefined;
                     stats: {
                         scoreMin: number;
                         scoreMax: number;
-                    };
+                    } | undefined;
                     autoscaleType: any;
                     scaleType: any;
                     inverted: any;
@@ -322,7 +321,7 @@ export default class WigglePlugin extends Plugin {
                     values: number[];
                     format: (d: import("d3-scale").NumberValue) => string;
                     position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-                };
+                } | undefined;
                 readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
@@ -481,10 +480,10 @@ export default class WigglePlugin extends Plugin {
                 reload(): void;
             } & {
                 currBpPerPx: number;
+                scrollTop: number;
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                scrollTop: number;
                 estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
                 estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
@@ -552,12 +551,11 @@ export default class WigglePlugin extends Plugin {
                     overrideHeight: number;
                 }): Promise<JSX.Element>;
             } & {
-                statsReady: boolean;
                 message: string | undefined;
                 stats: {
                     scoreMin: number;
                     scoreMax: number;
-                };
+                } | undefined;
                 statsFetchInProgress: AbortController | undefined;
             } & {
                 updateStats(stats: {
@@ -598,14 +596,14 @@ export default class WigglePlugin extends Plugin {
             } & {
                 readonly filled: any;
                 readonly summaryScoreModeSetting: any;
-                readonly domain: number[];
+                readonly domain: number[] | undefined;
                 readonly needsScalebar: boolean;
                 readonly scaleOpts: {
-                    domain: number[];
+                    domain: number[] | undefined;
                     stats: {
                         scoreMin: number;
                         scoreMax: number;
-                    };
+                    } | undefined;
                     autoscaleType: any;
                     scaleType: any;
                     inverted: any;
@@ -619,7 +617,7 @@ export default class WigglePlugin extends Plugin {
                     values: number[];
                     format: (d: import("d3-scale").NumberValue) => string;
                     position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-                };
+                } | undefined;
                 readonly adapterCapabilities: string[];
             } & {
                 renderProps(): any;
@@ -673,9 +671,9 @@ export default class WigglePlugin extends Plugin {
         }) => JSX.Element;
         XYPlotRenderer: typeof XYPlotRenderer;
         WiggleBaseRenderer: typeof WiggleBaseRenderer;
+        linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
         xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         utils: typeof utils;
-        linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
     };
 }
 export * from './util';

package/dist/index.js CHANGED Viewed

@@ -69,9 +69,9 @@ class WigglePlugin extends Plugin_1.default {
             XYPlotRendererReactComponent: XYPlotRenderer_2.ReactComponent,
             XYPlotRenderer: XYPlotRenderer_2.XYPlotRenderer,
             WiggleBaseRenderer: WiggleBaseRenderer_1.default,
+            linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
             xyPlotRendererConfigSchema: XYPlotRenderer_2.configSchema,
             utils,
-            linearWiggleDisplayModelFactory: LinearWiggleDisplay_2.modelFactory,
         };
     }
     install(pm) {

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/{LinearWiggleDisplay/components → shared}/SetMinMaxDialog.d.ts RENAMED Viewed

File without changes

package/dist/shared/SetMinMaxDialog.js ADDED Viewed

@@ -0,0 +1,53 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+function SetMinMaxDlg(props) {
+    const { model, handleClose } = props;
+    const { minScore, maxScore, scaleType } = model;
+    const [min, setMin] = (0, react_1.useState)(`${minScore !== Number.MIN_VALUE ? minScore : ''}`);
+    const [max, setMax] = (0, react_1.useState)(`${maxScore !== Number.MAX_VALUE ? maxScore : ''}`);
+    const ok = min !== '' && max !== '' && !Number.isNaN(+min) && !Number.isNaN(+max)
+        ? +max > +min
+        : true;
+    const logOk = scaleType === 'log' && min !== '' && !Number.isNaN(+min) ? +min > 0 : true;
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set min/max score for track" },
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null, "Enter min/max score: "),
+            !ok ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Max is greater than or equal to min")) : null,
+            !logOk ? (react_1.default.createElement(material_1.Typography, { color: "error" }, "Min score should be greater than 0 for log scale")) : null,
+            react_1.default.createElement(material_1.TextField, { value: min, onChange: event => setMin(event.target.value), placeholder: "Enter min score" }),
+            react_1.default.createElement(material_1.TextField, { value: max, onChange: event => setMax(event.target.value), placeholder: "Enter max score" })),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", style: { marginLeft: 20 }, disabled: !ok, onClick: () => {
+                    model.setMinScore(min !== '' && !Number.isNaN(+min) ? +min : undefined);
+                    model.setMaxScore(max !== '' && !Number.isNaN(+max) ? +max : undefined);
+                    handleClose();
+                } }, "Submit"))));
+}
+exports.default = SetMinMaxDlg;
+//# sourceMappingURL=SetMinMaxDialog.js.map

package/dist/shared/SetMinMaxDialog.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"SetMinMaxDialog.js","sourceRoot":"","sources":["../../src/shared/SetMinMaxDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAMsB;AACtB,yCAAyC;AAEzC,SAAwB,YAAY,CAAC,KASpC;IACC,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAE/C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IACD,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,gBAAQ,EAC5B,GAAG,QAAQ,KAAK,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,EAAE,CACnD,CAAA;IAED,MAAM,EAAE,GACN,GAAG,KAAK,EAAE,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC;QACpE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG;QACb,CAAC,CAAC,IAAI,CAAA;IAEV,MAAM,KAAK,GACT,SAAS,KAAK,KAAK,IAAI,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAE5E,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,6BAA6B;QACpE,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,gCAAmC;YAC7C,CAAC,EAAE,CAAC,CAAC,CAAC,CACL,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,0CAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAEP,CAAC,KAAK,CAAC,CAAC,CAAC,CACR,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,uDAEZ,CACd,CAAC,CAAC,CAAC,IAAI;YAER,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B;YACF,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC7C,WAAW,EAAC,iBAAiB,GAC7B,CACY;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,IAAI,EAAC,QAAQ,EACb,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,EACzB,QAAQ,EAAE,CAAC,EAAE,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,KAAK,CAAC,WAAW,CACf,GAAG,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CACrD,CAAA;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACT,CACV,CAAA;AACH,CAAC;AA7ED,+BA6EC"}

package/esm/BigWigAdapter/index.js CHANGED Viewed

@@ -3,6 +3,7 @@ import configSchema from './configSchema';
 export default (pluginManager) => {
     pluginManager.addAdapterType(() => new AdapterType({
         name: 'BigWigAdapter',
+        displayName: 'BigWig adapter',
         configSchema,
         adapterCapabilities: [
             'hasResolution',

package/esm/BigWigAdapter/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,WAAW,EAAE,gBAAgB;QAC7B,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/esm/LinearWiggleDisplay/components/SetColorDialog.js CHANGED Viewed

@@ -1,26 +1,13 @@
 import React, { useState } from 'react';
 import { observer } from 'mobx-react';
-import { Button, Dialog, DialogContent, DialogActions, DialogTitle, FormControlLabel, IconButton, Radio, Typography, } from '@mui/material';
-import { makeStyles } from 'tss-react/mui';
-import CloseIcon from '@mui/icons-material/Close';
+import { Button, DialogContent, DialogActions, FormControlLabel, Radio, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { ColorPicker } from '@jbrowse/core/ui/ColorPicker';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
 function SetColorDialog({ model, handleClose, }) {
-    const { classes } = useStyles();
     const [posneg, setPosNeg] = useState(false);
-    return (React.createElement(Dialog, { open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors",
-            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
-                React.createElement(CloseIcon, null))),
+    return (React.createElement(Dialog, { open: true, onClose: handleClose, title: "Set color" },
         React.createElement(DialogContent, null,
+            React.createElement(Typography, null, "Select either an overall color, or the positive/negative colors. Note that density renderers only work properly with positive/negative colors"),
             React.createElement(FormControlLabel, { checked: !posneg, onClick: () => setPosNeg(false), control: React.createElement(Radio, null), label: 'Overall color' }),
             React.createElement(FormControlLabel, { checked: posneg, onClick: () => setPosNeg(true), control: React.createElement(Radio, null), label: 'Positive/negative color' }),
             posneg ? (React.createElement(React.Fragment, null,