@jbrowse/plugin-variants 4.0.4 → 4.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (128) hide show
  1. package/esm/LDDisplay/SharedLDConfigSchema.d.ts +102 -0
  2. package/esm/LDDisplay/SharedLDConfigSchema.js +83 -0
  3. package/esm/LDDisplay/afterAttach.d.ts +2 -0
  4. package/esm/LDDisplay/afterAttach.js +123 -0
  5. package/esm/LDDisplay/components/BaseDisplayComponent.d.ts +15 -0
  6. package/esm/LDDisplay/components/BaseDisplayComponent.js +39 -0
  7. package/esm/LDDisplay/components/LDColorLegend.d.ts +15 -0
  8. package/esm/LDDisplay/components/LDColorLegend.js +75 -0
  9. package/esm/LDDisplay/components/LDDisplayComponent.d.ts +5 -0
  10. package/esm/LDDisplay/components/LDDisplayComponent.js +203 -0
  11. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +16 -0
  12. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.js +109 -0
  13. package/esm/LDDisplay/configSchema1.d.ts +115 -0
  14. package/esm/LDDisplay/configSchema1.js +16 -0
  15. package/esm/LDDisplay/configSchema2.d.ts +115 -0
  16. package/esm/LDDisplay/configSchema2.js +16 -0
  17. package/esm/LDDisplay/index.d.ts +2 -0
  18. package/esm/LDDisplay/index.js +35 -0
  19. package/esm/LDDisplay/renderSvg.d.ts +3 -0
  20. package/esm/LDDisplay/renderSvg.js +36 -0
  21. package/esm/LDDisplay/shared.d.ts +367 -0
  22. package/esm/LDDisplay/shared.js +467 -0
  23. package/esm/LDDisplay/stateModel1.d.ts +365 -0
  24. package/esm/LDDisplay/stateModel1.js +10 -0
  25. package/esm/LDDisplay/stateModel2.d.ts +365 -0
  26. package/esm/LDDisplay/stateModel2.js +10 -0
  27. package/esm/LDRenderer/LDRenderer.d.ts +30 -0
  28. package/esm/LDRenderer/LDRenderer.js +109 -0
  29. package/esm/LDRenderer/components/LDRendering.d.ts +2 -0
  30. package/esm/LDRenderer/components/LDRendering.js +4 -0
  31. package/esm/LDRenderer/configSchema.d.ts +8 -0
  32. package/esm/LDRenderer/configSchema.js +10 -0
  33. package/esm/LDRenderer/index.d.ts +2 -0
  34. package/esm/LDRenderer/index.js +11 -0
  35. package/esm/LDRenderer/makeImageData.d.ts +20 -0
  36. package/esm/LDRenderer/makeImageData.js +157 -0
  37. package/esm/LDRenderer/types.d.ts +8 -0
  38. package/esm/LDRenderer/types.js +1 -0
  39. package/esm/LDTrack/configSchema.d.ts +85 -0
  40. package/esm/LDTrack/configSchema.js +7 -0
  41. package/esm/LDTrack/index.d.ts +2 -0
  42. package/esm/LDTrack/index.js +14 -0
  43. package/esm/LinearVariantDisplay/model.d.ts +126 -42
  44. package/esm/LinearVariantDisplay/model.js +46 -8
  45. package/esm/MultiLinearVariantDisplay/configSchema.d.ts +27 -1
  46. package/esm/MultiLinearVariantDisplay/model.d.ts +2635 -31
  47. package/esm/MultiLinearVariantDisplay/model.js +6 -0
  48. package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +10 -2
  49. package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +25 -0
  50. package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +26 -0
  51. package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +2636 -32
  52. package/esm/MultiLinearVariantMatrixDisplay/model.js +6 -0
  53. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +2 -2
  54. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +11 -9
  55. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +8 -0
  56. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +14 -2
  57. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +8 -11
  58. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +2 -2
  59. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +4 -3
  60. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +4 -0
  61. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +23 -2
  62. package/esm/MultiLinearVariantRenderer/makeImageData.js +12 -12
  63. package/esm/PlinkLDAdapter/PlinkLDAdapter.d.ts +25 -0
  64. package/esm/PlinkLDAdapter/PlinkLDAdapter.js +147 -0
  65. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.d.ts +24 -0
  66. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.js +156 -0
  67. package/esm/PlinkLDAdapter/configSchema.d.ts +10 -0
  68. package/esm/PlinkLDAdapter/configSchema.js +25 -0
  69. package/esm/PlinkLDAdapter/configSchemaTabix.d.ts +24 -0
  70. package/esm/PlinkLDAdapter/configSchemaTabix.js +46 -0
  71. package/esm/PlinkLDAdapter/index.d.ts +2 -0
  72. package/esm/PlinkLDAdapter/index.js +25 -0
  73. package/esm/PlinkLDAdapter/types.d.ts +29 -0
  74. package/esm/PlinkLDAdapter/types.js +1 -0
  75. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +1 -1
  76. package/esm/VariantRPC/MultiVariantGetFeatureDetails.d.ts +14 -0
  77. package/esm/VariantRPC/MultiVariantGetFeatureDetails.js +15 -0
  78. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +4 -1
  79. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +3 -3
  80. package/esm/VariantRPC/executeClusterGenotypeMatrix.js +6 -3
  81. package/esm/VariantRPC/getGenotypeMatrix.d.ts +2 -3
  82. package/esm/VariantRPC/getGenotypeMatrix.js +4 -5
  83. package/esm/VariantRPC/getLDMatrix.d.ts +47 -0
  84. package/esm/VariantRPC/getLDMatrix.js +387 -0
  85. package/esm/VariantRPC/getLDMatrixFromPlink.d.ts +16 -0
  86. package/esm/VariantRPC/getLDMatrixFromPlink.js +105 -0
  87. package/esm/VariantRPC/getPhasedGenotypeMatrix.d.ts +2 -3
  88. package/esm/VariantRPC/getPhasedGenotypeMatrix.js +4 -5
  89. package/esm/VariantRPC/types.d.ts +3 -0
  90. package/esm/VcfAdapter/VcfAdapter.d.ts +1 -1
  91. package/esm/VcfAdapter/VcfAdapter.js +1 -2
  92. package/esm/VcfExtensionPoints/index.js +29 -3
  93. package/esm/VcfFeature/index.d.ts +2 -1
  94. package/esm/VcfFeature/index.js +4 -2
  95. package/esm/index.d.ts +1 -0
  96. package/esm/index.js +23 -0
  97. package/esm/shared/MultiVariantBaseModel.d.ts +2626 -26
  98. package/esm/shared/MultiVariantBaseModel.js +88 -39
  99. package/esm/shared/SharedVariantConfigSchema.d.ts +27 -1
  100. package/esm/shared/SharedVariantConfigSchema.js +28 -1
  101. package/esm/shared/VariantFeatureCache.d.ts +27 -0
  102. package/esm/shared/VariantFeatureCache.js +48 -0
  103. package/esm/shared/VariantRendererType.d.ts +23 -0
  104. package/esm/shared/VariantRendererType.js +15 -0
  105. package/esm/shared/applyColorPalette.d.ts +9 -0
  106. package/esm/shared/applyColorPalette.js +23 -0
  107. package/esm/shared/colorByAutorun.d.ts +10 -0
  108. package/esm/shared/colorByAutorun.js +39 -0
  109. package/esm/shared/components/AddFiltersDialog.d.ts +3 -3
  110. package/esm/shared/components/AddFiltersDialog.js +29 -22
  111. package/esm/shared/components/LDFilterDialog.d.ts +13 -0
  112. package/esm/shared/components/LDFilterDialog.js +102 -0
  113. package/esm/shared/components/MAFFilterDialog.js +23 -16
  114. package/esm/shared/components/RecombinationTrack.d.ts +21 -0
  115. package/esm/shared/components/RecombinationTrack.js +54 -0
  116. package/esm/shared/components/RecombinationYScaleBar.d.ts +7 -0
  117. package/esm/shared/components/RecombinationYScaleBar.js +34 -0
  118. package/esm/shared/components/SetColorDialogRowPalettizer.d.ts +3 -8
  119. package/esm/shared/components/SetColorDialogRowPalettizer.js +2 -14
  120. package/esm/shared/drawAlleleCount.js +9 -0
  121. package/esm/shared/drawPhased.d.ts +1 -1
  122. package/esm/shared/drawPhased.js +31 -2
  123. package/esm/shared/mafFilterUtils.d.ts +5 -0
  124. package/esm/shared/mafFilterUtils.js +17 -0
  125. package/esm/shared/minorAlleleFrequencyUtils.d.ts +4 -2
  126. package/esm/shared/minorAlleleFrequencyUtils.js +261 -19
  127. package/esm/shared/setupMultiVariantAutoruns.js +2 -0
  128. package/package.json +11 -10
@@ -93,14 +93,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
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  layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
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  configuration: AnyConfigurationSchemaType;
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- minorAlleleFrequencyFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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- showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- showTree: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- renderingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
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+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
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+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
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  lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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  jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
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- referenceDrawingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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  lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -1109,6 +1109,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
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  featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
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  sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
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+ colorByApplied: boolean;
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  featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
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  hasPhased: boolean;
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  sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
@@ -1119,6 +1120,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
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  treeCanvas: HTMLCanvasElement | undefined;
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  mouseoverCanvas: HTMLCanvasElement | undefined;
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+ } & {
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+ readonly renderingMode: string;
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  } & {
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  setJexlFilters(f?: string[]): void;
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  setRowHeight(arg: number | "auto"): void;
@@ -1131,6 +1134,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
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  setTreeAreaWidth(width: number): void;
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  setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
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+ setColorByApplied(value: boolean): void;
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  setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
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  clearLayout(): void;
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  setClusterTree(tree?: string): void;
@@ -1147,7 +1151,11 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  setReferenceDrawingMode(arg: string): void;
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  } & {
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  readonly autoHeight: boolean;
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- readonly activeFilters: any;
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+ readonly minorAlleleFrequencyFilter: any;
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+ readonly showSidebarLabels: any;
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+ readonly showTree: any;
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+ readonly referenceDrawingMode: string;
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+ activeFilters(): any;
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  readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
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  readonly sources: import("../shared/types.ts").Source[] | undefined;
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  readonly root: any;
@@ -1170,24 +1178,24 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  subMenu: ({
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  label: string;
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  type: string;
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- checked: boolean;
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- disabled: boolean;
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+ checked: any;
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  onClick: () => void;
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+ disabled?: undefined;
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  helpText?: undefined;
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  } | {
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  label: string;
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- helpText: string;
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  type: string;
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- checked: boolean;
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+ checked: any;
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+ disabled: boolean;
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  onClick: () => void;
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- disabled?: undefined;
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+ helpText?: undefined;
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  } | {
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  label: string;
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+ helpText: string;
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  type: string;
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- checked: boolean | undefined;
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+ checked: boolean;
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  onClick: () => void;
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  disabled?: undefined;
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- helpText?: undefined;
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  })[];
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  onClick?: undefined;
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  } | {
@@ -1237,10 +1245,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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  muiName: string;
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  };
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- subMenu: {
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- label: string;
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- onClick: () => void;
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- }[];
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+ subMenu: import("@jbrowse/core/ui").MenuItem[];
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  type?: undefined;
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  onClick?: undefined;
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  } | {
@@ -1253,13 +1258,13 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  subMenu?: undefined;
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  })[];
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  } & {
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- readonly canDisplayLabels: boolean;
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+ readonly canDisplayLabels: any;
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  readonly totalHeight: number;
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  readonly featuresReady: boolean;
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  getPortableSettings(): {
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- minorAlleleFrequencyFilter: number;
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- showSidebarLabelsSetting: boolean;
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- showTree: boolean;
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+ minorAlleleFrequencyFilter: any;
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+ showSidebarLabelsSetting: boolean | undefined;
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+ showTree: any;
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  renderingMode: string;
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  lengthCutoffFilter: number;
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  jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
@@ -1271,11 +1276,2610 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  };
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  } & {
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  renderProps(): any;
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- legendItems(): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
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- } & {
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- afterAttach(): void;
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- } & {
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- readonly rendererTypeName: string;
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+ renderingProps(): {
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+ displayModel: {
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+ id: string;
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+ type: never;
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+ rpcDriverName: string | undefined;
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+ heightPreConfig: number | undefined;
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+ userBpPerPxLimit: number | undefined;
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+ userByteSizeLimit: number | undefined;
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+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
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+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
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+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ }, {
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+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
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+ filled: boolean;
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+ reactElement: React.ReactElement | undefined;
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+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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+ layout: any;
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+ blockStatusMessage: string;
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+ error: unknown;
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+ message: string | undefined;
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+ maxHeightReached: boolean;
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+ ReactComponent: ({ model, }: {
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+ model: {
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+ error?: unknown;
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+ reload: () => void;
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+ message?: React.ReactNode;
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+ statusMessage?: string;
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+ reactElement?: React.ReactElement;
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+ isRenderingPending?: boolean;
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+ };
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+ }) => import("react/jsx-runtime").JSX.Element;
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+ renderProps: any;
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+ renderArgs: Record<string, unknown> | undefined;
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+ isRenderingPending: boolean;
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+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
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+ } & {
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+ doReload(): void;
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+ setStatusMessage(message: string): void;
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+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
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+ setMessage(messageText: string): void;
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+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
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+ setError(error: unknown): void;
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+ reload(): void;
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+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
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+ beforeDestroy(): void;
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+ } & {
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+ readonly statusMessage: any;
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+ } & {
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+ afterAttach(): void;
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+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
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+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
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+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
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+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ }, {
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+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
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+ filled: boolean;
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+ reactElement: React.ReactElement | undefined;
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+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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+ layout: any;
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+ blockStatusMessage: string;
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+ error: unknown;
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+ message: string | undefined;
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+ maxHeightReached: boolean;
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+ ReactComponent: ({ model, }: {
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+ model: {
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+ error?: unknown;
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+ reload: () => void;
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+ message?: React.ReactNode;
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+ statusMessage?: string;
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+ reactElement?: React.ReactElement;
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+ isRenderingPending?: boolean;
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+ };
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+ }) => import("react/jsx-runtime").JSX.Element;
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+ renderProps: any;
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+ renderArgs: Record<string, unknown> | undefined;
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+ isRenderingPending: boolean;
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+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
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+ } & {
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+ doReload(): void;
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+ setStatusMessage(message: string): void;
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+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
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+ setMessage(messageText: string): void;
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+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
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+ setError(error: unknown): void;
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+ reload(): void;
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+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
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+ beforeDestroy(): void;
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+ } & {
1372
+ readonly statusMessage: any;
1373
+ } & {
1374
+ afterAttach(): void;
1375
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1376
+ configuration: {
1377
+ [x: string]: any;
1378
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1379
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1380
+ [x: string]: any;
1381
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1382
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1383
+ [x: string]: any;
1384
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1385
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1386
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1387
+ maxFeatureScreenDensity: {
1388
+ type: string;
1389
+ description: string;
1390
+ defaultValue: number;
1391
+ };
1392
+ fetchSizeLimit: {
1393
+ type: string;
1394
+ defaultValue: number;
1395
+ description: string;
1396
+ };
1397
+ height: {
1398
+ type: string;
1399
+ defaultValue: number;
1400
+ description: string;
1401
+ };
1402
+ mouseover: {
1403
+ type: string;
1404
+ description: string;
1405
+ defaultValue: string;
1406
+ contextVariable: string[];
1407
+ };
1408
+ jexlFilters: {
1409
+ type: string;
1410
+ description: string;
1411
+ defaultValue: never[];
1412
+ };
1413
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
1414
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1415
+ [x: string]: any;
1416
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1417
+ };
1418
+ showLegend: boolean | undefined;
1419
+ showTooltips: boolean | undefined;
1420
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
1421
+ minorAlleleFrequencyFilterSetting: number | undefined;
1422
+ showSidebarLabelsSetting: boolean | undefined;
1423
+ showTreeSetting: boolean | undefined;
1424
+ renderingModeSetting: string | undefined;
1425
+ rowHeightMode: number | "auto";
1426
+ lengthCutoffFilter: number;
1427
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
1428
+ referenceDrawingModeSetting: string | undefined;
1429
+ clusterTree: string | undefined;
1430
+ treeAreaWidth: number;
1431
+ lineZoneHeight: number;
1432
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1433
+ rendererTypeName: string;
1434
+ error: unknown;
1435
+ statusMessage: string | undefined;
1436
+ } & {
1437
+ readonly RenderingComponent: React.FC<{
1438
+ model: {
1439
+ id: string;
1440
+ type: string;
1441
+ rpcDriverName: string | undefined;
1442
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1443
+ rendererTypeName: string;
1444
+ error: unknown;
1445
+ statusMessage: string | undefined;
1446
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1447
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1448
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1449
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1450
+ }, {
1451
+ rendererTypeName: string;
1452
+ error: unknown;
1453
+ statusMessage: string | undefined;
1454
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1455
+ onHorizontalScroll?: () => void;
1456
+ blockState?: Record<string, any>;
1457
+ }>;
1458
+ readonly DisplayBlurb: React.FC<{
1459
+ model: {
1460
+ id: string;
1461
+ type: string;
1462
+ rpcDriverName: string | undefined;
1463
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1464
+ rendererTypeName: string;
1465
+ error: unknown;
1466
+ statusMessage: string | undefined;
1467
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1468
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1469
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1470
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1471
+ }, {
1472
+ rendererTypeName: string;
1473
+ error: unknown;
1474
+ statusMessage: string | undefined;
1475
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1476
+ }> | null;
1477
+ readonly adapterConfig: any;
1478
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1479
+ readonly isMinimized: boolean;
1480
+ readonly parentDisplay: any;
1481
+ readonly effectiveRpcDriverName: any;
1482
+ } & {
1483
+ renderProps(): any;
1484
+ renderingProps(): {
1485
+ displayModel: {
1486
+ id: string;
1487
+ type: string;
1488
+ rpcDriverName: string | undefined;
1489
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1490
+ rendererTypeName: string;
1491
+ error: unknown;
1492
+ statusMessage: string | undefined;
1493
+ } & {
1494
+ readonly RenderingComponent: React.FC<{
1495
+ model: {
1496
+ id: string;
1497
+ type: string;
1498
+ rpcDriverName: string | undefined;
1499
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1500
+ rendererTypeName: string;
1501
+ error: unknown;
1502
+ statusMessage: string | undefined;
1503
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1504
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1505
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1506
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1507
+ }, {
1508
+ rendererTypeName: string;
1509
+ error: unknown;
1510
+ statusMessage: string | undefined;
1511
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1512
+ onHorizontalScroll?: () => void;
1513
+ blockState?: Record<string, any>;
1514
+ }>;
1515
+ readonly DisplayBlurb: React.FC<{
1516
+ model: {
1517
+ id: string;
1518
+ type: string;
1519
+ rpcDriverName: string | undefined;
1520
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1521
+ rendererTypeName: string;
1522
+ error: unknown;
1523
+ statusMessage: string | undefined;
1524
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1525
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1526
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1527
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1528
+ }, {
1529
+ rendererTypeName: string;
1530
+ error: unknown;
1531
+ statusMessage: string | undefined;
1532
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1533
+ }> | null;
1534
+ readonly adapterConfig: any;
1535
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1536
+ readonly isMinimized: boolean;
1537
+ readonly parentDisplay: any;
1538
+ readonly effectiveRpcDriverName: any;
1539
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1540
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1541
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1542
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1543
+ }, {
1544
+ rendererTypeName: string;
1545
+ error: unknown;
1546
+ statusMessage: string | undefined;
1547
+ } & {
1548
+ readonly RenderingComponent: React.FC<{
1549
+ model: {
1550
+ id: string;
1551
+ type: string;
1552
+ rpcDriverName: string | undefined;
1553
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1554
+ rendererTypeName: string;
1555
+ error: unknown;
1556
+ statusMessage: string | undefined;
1557
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1558
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1559
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1560
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1561
+ }, {
1562
+ rendererTypeName: string;
1563
+ error: unknown;
1564
+ statusMessage: string | undefined;
1565
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1566
+ onHorizontalScroll?: () => void;
1567
+ blockState?: Record<string, any>;
1568
+ }>;
1569
+ readonly DisplayBlurb: React.FC<{
1570
+ model: {
1571
+ id: string;
1572
+ type: string;
1573
+ rpcDriverName: string | undefined;
1574
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1575
+ rendererTypeName: string;
1576
+ error: unknown;
1577
+ statusMessage: string | undefined;
1578
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1579
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1580
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1581
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1582
+ }, {
1583
+ rendererTypeName: string;
1584
+ error: unknown;
1585
+ statusMessage: string | undefined;
1586
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1587
+ }> | null;
1588
+ readonly adapterConfig: any;
1589
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1590
+ readonly isMinimized: boolean;
1591
+ readonly parentDisplay: any;
1592
+ readonly effectiveRpcDriverName: any;
1593
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1594
+ };
1595
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1596
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1597
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1598
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1599
+ regionCannotBeRendered(): null;
1600
+ } & {
1601
+ setStatusMessage(arg?: string): void;
1602
+ setError(error?: unknown): void;
1603
+ setRpcDriverName(rpcDriverName: string): void;
1604
+ reload(): void;
1605
+ } & {
1606
+ scrollTop: number;
1607
+ } & {
1608
+ readonly height: number;
1609
+ } & {
1610
+ setScrollTop(scrollTop: number): void;
1611
+ setHeight(displayHeight: number): number;
1612
+ resizeHeight(distance: number): number;
1613
+ } & {
1614
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1615
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1616
+ currStatsBpPerPx: number;
1617
+ } & {
1618
+ readonly currentBytesRequested: number;
1619
+ readonly currentFeatureScreenDensity: number;
1620
+ readonly maxFeatureScreenDensity: any;
1621
+ readonly featureDensityStatsReady: boolean;
1622
+ readonly maxAllowableBytes: number;
1623
+ } & {
1624
+ afterAttach(): void;
1625
+ } & {
1626
+ setCurrStatsBpPerPx(n: number): void;
1627
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1628
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1629
+ setFeatureDensityStatsP(arg: any): void;
1630
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1631
+ clearFeatureDensityStats(): void;
1632
+ } & {
1633
+ readonly regionTooLarge: boolean;
1634
+ readonly regionTooLargeReason: string;
1635
+ } & {
1636
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1637
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1638
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1639
+ } & {
1640
+ mouseoverExtraInformation: string | undefined;
1641
+ featureIdUnderMouse: undefined | string;
1642
+ subfeatureIdUnderMouse: undefined | string;
1643
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1644
+ } & {
1645
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1646
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1647
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1648
+ } & {
1649
+ readonly renderDelay: number;
1650
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1651
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1652
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1653
+ readonly selectedFeatureId: string | undefined;
1654
+ readonly featureWidgetType: {
1655
+ type: string;
1656
+ id: string;
1657
+ };
1658
+ } & {
1659
+ readonly showTooltipsEnabled: boolean;
1660
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1661
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1662
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1663
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
1664
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1665
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1666
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1667
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1668
+ } & {
1669
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1670
+ deleteBlock(key: string): void;
1671
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1672
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1673
+ clearFeatureSelection(): void;
1674
+ setFeatureIdUnderMouse(feature?: string): void;
1675
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1676
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1677
+ setMouseoverExtraInformation(extra?: string): void;
1678
+ setShowLegend(s: boolean): void;
1679
+ setShowTooltips(arg: boolean): void;
1680
+ } & {
1681
+ reload(): Promise<void>;
1682
+ } & {
1683
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1684
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1685
+ } & {
1686
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1687
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1688
+ renderingProps(): {
1689
+ displayModel: {
1690
+ id: string;
1691
+ type: string;
1692
+ rpcDriverName: string | undefined;
1693
+ heightPreConfig: number | undefined;
1694
+ userBpPerPxLimit: number | undefined;
1695
+ userByteSizeLimit: number | undefined;
1696
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
1697
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1698
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1699
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1700
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1701
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1702
+ }, {
1703
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1704
+ filled: boolean;
1705
+ reactElement: React.ReactElement | undefined;
1706
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1707
+ layout: any;
1708
+ blockStatusMessage: string;
1709
+ error: unknown;
1710
+ message: string | undefined;
1711
+ maxHeightReached: boolean;
1712
+ ReactComponent: ({ model, }: {
1713
+ model: {
1714
+ error?: unknown;
1715
+ reload: () => void;
1716
+ message?: React.ReactNode;
1717
+ statusMessage?: string;
1718
+ reactElement?: React.ReactElement;
1719
+ isRenderingPending?: boolean;
1720
+ };
1721
+ }) => import("react/jsx-runtime").JSX.Element;
1722
+ renderProps: any;
1723
+ renderArgs: Record<string, unknown> | undefined;
1724
+ isRenderingPending: boolean;
1725
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1726
+ } & {
1727
+ doReload(): void;
1728
+ setStatusMessage(message: string): void;
1729
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1730
+ setMessage(messageText: string): void;
1731
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1732
+ setError(error: unknown): void;
1733
+ reload(): void;
1734
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1735
+ beforeDestroy(): void;
1736
+ } & {
1737
+ readonly statusMessage: any;
1738
+ } & {
1739
+ afterAttach(): void;
1740
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1741
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1742
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1743
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1744
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1745
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1746
+ }, {
1747
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1748
+ filled: boolean;
1749
+ reactElement: React.ReactElement | undefined;
1750
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1751
+ layout: any;
1752
+ blockStatusMessage: string;
1753
+ error: unknown;
1754
+ message: string | undefined;
1755
+ maxHeightReached: boolean;
1756
+ ReactComponent: ({ model, }: {
1757
+ model: {
1758
+ error?: unknown;
1759
+ reload: () => void;
1760
+ message?: React.ReactNode;
1761
+ statusMessage?: string;
1762
+ reactElement?: React.ReactElement;
1763
+ isRenderingPending?: boolean;
1764
+ };
1765
+ }) => import("react/jsx-runtime").JSX.Element;
1766
+ renderProps: any;
1767
+ renderArgs: Record<string, unknown> | undefined;
1768
+ isRenderingPending: boolean;
1769
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1770
+ } & {
1771
+ doReload(): void;
1772
+ setStatusMessage(message: string): void;
1773
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1774
+ setMessage(messageText: string): void;
1775
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1776
+ setError(error: unknown): void;
1777
+ reload(): void;
1778
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1779
+ beforeDestroy(): void;
1780
+ } & {
1781
+ readonly statusMessage: any;
1782
+ } & {
1783
+ afterAttach(): void;
1784
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1785
+ configuration: {
1786
+ [x: string]: any;
1787
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1788
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1789
+ [x: string]: any;
1790
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1791
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1792
+ [x: string]: any;
1793
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1794
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1795
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1796
+ maxFeatureScreenDensity: {
1797
+ type: string;
1798
+ description: string;
1799
+ defaultValue: number;
1800
+ };
1801
+ fetchSizeLimit: {
1802
+ type: string;
1803
+ defaultValue: number;
1804
+ description: string;
1805
+ };
1806
+ height: {
1807
+ type: string;
1808
+ defaultValue: number;
1809
+ description: string;
1810
+ };
1811
+ mouseover: {
1812
+ type: string;
1813
+ description: string;
1814
+ defaultValue: string;
1815
+ contextVariable: string[];
1816
+ };
1817
+ jexlFilters: {
1818
+ type: string;
1819
+ description: string;
1820
+ defaultValue: never[];
1821
+ };
1822
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
1823
+ showLegend: boolean | undefined;
1824
+ showTooltips: boolean | undefined;
1825
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1826
+ rendererTypeName: string;
1827
+ error: unknown;
1828
+ statusMessage: string | undefined;
1829
+ } & {
1830
+ readonly RenderingComponent: React.FC<{
1831
+ model: {
1832
+ id: string;
1833
+ type: string;
1834
+ rpcDriverName: string | undefined;
1835
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1836
+ rendererTypeName: string;
1837
+ error: unknown;
1838
+ statusMessage: string | undefined;
1839
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1840
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1841
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1842
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1843
+ }, {
1844
+ rendererTypeName: string;
1845
+ error: unknown;
1846
+ statusMessage: string | undefined;
1847
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1848
+ onHorizontalScroll?: () => void;
1849
+ blockState?: Record<string, any>;
1850
+ }>;
1851
+ readonly DisplayBlurb: React.FC<{
1852
+ model: {
1853
+ id: string;
1854
+ type: string;
1855
+ rpcDriverName: string | undefined;
1856
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1857
+ rendererTypeName: string;
1858
+ error: unknown;
1859
+ statusMessage: string | undefined;
1860
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1861
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1862
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1863
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1864
+ }, {
1865
+ rendererTypeName: string;
1866
+ error: unknown;
1867
+ statusMessage: string | undefined;
1868
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1869
+ }> | null;
1870
+ readonly adapterConfig: any;
1871
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1872
+ readonly isMinimized: boolean;
1873
+ readonly parentDisplay: any;
1874
+ readonly effectiveRpcDriverName: any;
1875
+ } & {
1876
+ renderProps(): any;
1877
+ renderingProps(): {
1878
+ displayModel: {
1879
+ id: string;
1880
+ type: string;
1881
+ rpcDriverName: string | undefined;
1882
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1883
+ rendererTypeName: string;
1884
+ error: unknown;
1885
+ statusMessage: string | undefined;
1886
+ } & {
1887
+ readonly RenderingComponent: React.FC<{
1888
+ model: {
1889
+ id: string;
1890
+ type: string;
1891
+ rpcDriverName: string | undefined;
1892
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1893
+ rendererTypeName: string;
1894
+ error: unknown;
1895
+ statusMessage: string | undefined;
1896
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1897
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1898
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1899
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1900
+ }, {
1901
+ rendererTypeName: string;
1902
+ error: unknown;
1903
+ statusMessage: string | undefined;
1904
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1905
+ onHorizontalScroll?: () => void;
1906
+ blockState?: Record<string, any>;
1907
+ }>;
1908
+ readonly DisplayBlurb: React.FC<{
1909
+ model: {
1910
+ id: string;
1911
+ type: string;
1912
+ rpcDriverName: string | undefined;
1913
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1914
+ rendererTypeName: string;
1915
+ error: unknown;
1916
+ statusMessage: string | undefined;
1917
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1918
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1919
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1920
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1921
+ }, {
1922
+ rendererTypeName: string;
1923
+ error: unknown;
1924
+ statusMessage: string | undefined;
1925
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1926
+ }> | null;
1927
+ readonly adapterConfig: any;
1928
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1929
+ readonly isMinimized: boolean;
1930
+ readonly parentDisplay: any;
1931
+ readonly effectiveRpcDriverName: any;
1932
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1933
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1934
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1935
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1936
+ }, {
1937
+ rendererTypeName: string;
1938
+ error: unknown;
1939
+ statusMessage: string | undefined;
1940
+ } & {
1941
+ readonly RenderingComponent: React.FC<{
1942
+ model: {
1943
+ id: string;
1944
+ type: string;
1945
+ rpcDriverName: string | undefined;
1946
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1947
+ rendererTypeName: string;
1948
+ error: unknown;
1949
+ statusMessage: string | undefined;
1950
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1951
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1952
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1953
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1954
+ }, {
1955
+ rendererTypeName: string;
1956
+ error: unknown;
1957
+ statusMessage: string | undefined;
1958
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1959
+ onHorizontalScroll?: () => void;
1960
+ blockState?: Record<string, any>;
1961
+ }>;
1962
+ readonly DisplayBlurb: React.FC<{
1963
+ model: {
1964
+ id: string;
1965
+ type: string;
1966
+ rpcDriverName: string | undefined;
1967
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1968
+ rendererTypeName: string;
1969
+ error: unknown;
1970
+ statusMessage: string | undefined;
1971
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1972
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1973
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1974
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1975
+ }, {
1976
+ rendererTypeName: string;
1977
+ error: unknown;
1978
+ statusMessage: string | undefined;
1979
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1980
+ }> | null;
1981
+ readonly adapterConfig: any;
1982
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1983
+ readonly isMinimized: boolean;
1984
+ readonly parentDisplay: any;
1985
+ readonly effectiveRpcDriverName: any;
1986
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1987
+ };
1988
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1989
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1990
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1991
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1992
+ regionCannotBeRendered(): null;
1993
+ } & {
1994
+ setStatusMessage(arg?: string): void;
1995
+ setError(error?: unknown): void;
1996
+ setRpcDriverName(rpcDriverName: string): void;
1997
+ reload(): void;
1998
+ } & {
1999
+ scrollTop: number;
2000
+ } & {
2001
+ readonly height: number;
2002
+ } & {
2003
+ setScrollTop(scrollTop: number): void;
2004
+ setHeight(displayHeight: number): number;
2005
+ resizeHeight(distance: number): number;
2006
+ } & {
2007
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2008
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2009
+ currStatsBpPerPx: number;
2010
+ } & {
2011
+ readonly currentBytesRequested: number;
2012
+ readonly currentFeatureScreenDensity: number;
2013
+ readonly maxFeatureScreenDensity: any;
2014
+ readonly featureDensityStatsReady: boolean;
2015
+ readonly maxAllowableBytes: number;
2016
+ } & {
2017
+ afterAttach(): void;
2018
+ } & {
2019
+ setCurrStatsBpPerPx(n: number): void;
2020
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2021
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2022
+ setFeatureDensityStatsP(arg: any): void;
2023
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2024
+ clearFeatureDensityStats(): void;
2025
+ } & {
2026
+ readonly regionTooLarge: boolean;
2027
+ readonly regionTooLargeReason: string;
2028
+ } & {
2029
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2030
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2031
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2032
+ } & {
2033
+ mouseoverExtraInformation: string | undefined;
2034
+ featureIdUnderMouse: undefined | string;
2035
+ subfeatureIdUnderMouse: undefined | string;
2036
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2037
+ } & {
2038
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2039
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2040
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2041
+ } & {
2042
+ readonly renderDelay: number;
2043
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2044
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2045
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2046
+ readonly selectedFeatureId: string | undefined;
2047
+ readonly featureWidgetType: {
2048
+ type: string;
2049
+ id: string;
2050
+ };
2051
+ } & {
2052
+ readonly showTooltipsEnabled: boolean;
2053
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2054
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2055
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2056
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2057
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2058
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2059
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2060
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2061
+ } & {
2062
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2063
+ deleteBlock(key: string): void;
2064
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2065
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2066
+ clearFeatureSelection(): void;
2067
+ setFeatureIdUnderMouse(feature?: string): void;
2068
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2069
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2070
+ setMouseoverExtraInformation(extra?: string): void;
2071
+ setShowLegend(s: boolean): void;
2072
+ setShowTooltips(arg: boolean): void;
2073
+ } & {
2074
+ reload(): Promise<void>;
2075
+ } & {
2076
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2077
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2078
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2079
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2080
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2081
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2082
+ } & {
2083
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2084
+ } & {
2085
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2086
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2087
+ } & {
2088
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2089
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2090
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2091
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2092
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2093
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2094
+ }, {
2095
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2096
+ filled: boolean;
2097
+ reactElement: React.ReactElement | undefined;
2098
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2099
+ layout: any;
2100
+ blockStatusMessage: string;
2101
+ error: unknown;
2102
+ message: string | undefined;
2103
+ maxHeightReached: boolean;
2104
+ ReactComponent: ({ model, }: {
2105
+ model: {
2106
+ error?: unknown;
2107
+ reload: () => void;
2108
+ message?: React.ReactNode;
2109
+ statusMessage?: string;
2110
+ reactElement?: React.ReactElement;
2111
+ isRenderingPending?: boolean;
2112
+ };
2113
+ }) => import("react/jsx-runtime").JSX.Element;
2114
+ renderProps: any;
2115
+ renderArgs: Record<string, unknown> | undefined;
2116
+ isRenderingPending: boolean;
2117
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2118
+ } & {
2119
+ doReload(): void;
2120
+ setStatusMessage(message: string): void;
2121
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
2122
+ setMessage(messageText: string): void;
2123
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2124
+ setError(error: unknown): void;
2125
+ reload(): void;
2126
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2127
+ beforeDestroy(): void;
2128
+ } & {
2129
+ readonly statusMessage: any;
2130
+ } & {
2131
+ afterAttach(): void;
2132
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2133
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2134
+ maxFeatureScreenDensity: {
2135
+ type: string;
2136
+ description: string;
2137
+ defaultValue: number;
2138
+ };
2139
+ fetchSizeLimit: {
2140
+ type: string;
2141
+ defaultValue: number;
2142
+ description: string;
2143
+ };
2144
+ height: {
2145
+ type: string;
2146
+ defaultValue: number;
2147
+ description: string;
2148
+ };
2149
+ mouseover: {
2150
+ type: string;
2151
+ description: string;
2152
+ defaultValue: string;
2153
+ contextVariable: string[];
2154
+ };
2155
+ jexlFilters: {
2156
+ type: string;
2157
+ description: string;
2158
+ defaultValue: never[];
2159
+ };
2160
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2161
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2162
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2163
+ }, {
2164
+ rendererTypeName: string;
2165
+ error: unknown;
2166
+ statusMessage: string | undefined;
2167
+ } & {
2168
+ readonly RenderingComponent: React.FC<{
2169
+ model: {
2170
+ id: string;
2171
+ type: string;
2172
+ rpcDriverName: string | undefined;
2173
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2174
+ rendererTypeName: string;
2175
+ error: unknown;
2176
+ statusMessage: string | undefined;
2177
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2178
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2179
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2180
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2181
+ }, {
2182
+ rendererTypeName: string;
2183
+ error: unknown;
2184
+ statusMessage: string | undefined;
2185
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2186
+ onHorizontalScroll?: () => void;
2187
+ blockState?: Record<string, any>;
2188
+ }>;
2189
+ readonly DisplayBlurb: React.FC<{
2190
+ model: {
2191
+ id: string;
2192
+ type: string;
2193
+ rpcDriverName: string | undefined;
2194
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2195
+ rendererTypeName: string;
2196
+ error: unknown;
2197
+ statusMessage: string | undefined;
2198
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2199
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2200
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2201
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2202
+ }, {
2203
+ rendererTypeName: string;
2204
+ error: unknown;
2205
+ statusMessage: string | undefined;
2206
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2207
+ }> | null;
2208
+ readonly adapterConfig: any;
2209
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2210
+ readonly isMinimized: boolean;
2211
+ readonly parentDisplay: any;
2212
+ readonly effectiveRpcDriverName: any;
2213
+ } & {
2214
+ renderProps(): any;
2215
+ renderingProps(): {
2216
+ displayModel: {
2217
+ id: string;
2218
+ type: string;
2219
+ rpcDriverName: string | undefined;
2220
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2221
+ rendererTypeName: string;
2222
+ error: unknown;
2223
+ statusMessage: string | undefined;
2224
+ } & {
2225
+ readonly RenderingComponent: React.FC<{
2226
+ model: {
2227
+ id: string;
2228
+ type: string;
2229
+ rpcDriverName: string | undefined;
2230
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2231
+ rendererTypeName: string;
2232
+ error: unknown;
2233
+ statusMessage: string | undefined;
2234
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2235
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2236
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2237
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2238
+ }, {
2239
+ rendererTypeName: string;
2240
+ error: unknown;
2241
+ statusMessage: string | undefined;
2242
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2243
+ onHorizontalScroll?: () => void;
2244
+ blockState?: Record<string, any>;
2245
+ }>;
2246
+ readonly DisplayBlurb: React.FC<{
2247
+ model: {
2248
+ id: string;
2249
+ type: string;
2250
+ rpcDriverName: string | undefined;
2251
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2252
+ rendererTypeName: string;
2253
+ error: unknown;
2254
+ statusMessage: string | undefined;
2255
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2256
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2257
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2258
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2259
+ }, {
2260
+ rendererTypeName: string;
2261
+ error: unknown;
2262
+ statusMessage: string | undefined;
2263
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2264
+ }> | null;
2265
+ readonly adapterConfig: any;
2266
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2267
+ readonly isMinimized: boolean;
2268
+ readonly parentDisplay: any;
2269
+ readonly effectiveRpcDriverName: any;
2270
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2271
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2272
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2273
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2274
+ }, {
2275
+ rendererTypeName: string;
2276
+ error: unknown;
2277
+ statusMessage: string | undefined;
2278
+ } & {
2279
+ readonly RenderingComponent: React.FC<{
2280
+ model: {
2281
+ id: string;
2282
+ type: string;
2283
+ rpcDriverName: string | undefined;
2284
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2285
+ rendererTypeName: string;
2286
+ error: unknown;
2287
+ statusMessage: string | undefined;
2288
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2289
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2290
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2291
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2292
+ }, {
2293
+ rendererTypeName: string;
2294
+ error: unknown;
2295
+ statusMessage: string | undefined;
2296
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2297
+ onHorizontalScroll?: () => void;
2298
+ blockState?: Record<string, any>;
2299
+ }>;
2300
+ readonly DisplayBlurb: React.FC<{
2301
+ model: {
2302
+ id: string;
2303
+ type: string;
2304
+ rpcDriverName: string | undefined;
2305
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2306
+ rendererTypeName: string;
2307
+ error: unknown;
2308
+ statusMessage: string | undefined;
2309
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2310
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2311
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2312
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2313
+ }, {
2314
+ rendererTypeName: string;
2315
+ error: unknown;
2316
+ statusMessage: string | undefined;
2317
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2318
+ }> | null;
2319
+ readonly adapterConfig: any;
2320
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2321
+ readonly isMinimized: boolean;
2322
+ readonly parentDisplay: any;
2323
+ readonly effectiveRpcDriverName: any;
2324
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2325
+ };
2326
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2327
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2328
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2329
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2330
+ regionCannotBeRendered(): null;
2331
+ } & {
2332
+ setStatusMessage(arg?: string): void;
2333
+ setError(error?: unknown): void;
2334
+ setRpcDriverName(rpcDriverName: string): void;
2335
+ reload(): void;
2336
+ } & {
2337
+ scrollTop: number;
2338
+ } & {
2339
+ readonly height: number;
2340
+ } & {
2341
+ setScrollTop(scrollTop: number): void;
2342
+ setHeight(displayHeight: number): number;
2343
+ resizeHeight(distance: number): number;
2344
+ } & {
2345
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2346
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2347
+ currStatsBpPerPx: number;
2348
+ } & {
2349
+ readonly currentBytesRequested: number;
2350
+ readonly currentFeatureScreenDensity: number;
2351
+ readonly maxFeatureScreenDensity: any;
2352
+ readonly featureDensityStatsReady: boolean;
2353
+ readonly maxAllowableBytes: number;
2354
+ } & {
2355
+ afterAttach(): void;
2356
+ } & {
2357
+ setCurrStatsBpPerPx(n: number): void;
2358
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2359
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2360
+ setFeatureDensityStatsP(arg: any): void;
2361
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2362
+ clearFeatureDensityStats(): void;
2363
+ } & {
2364
+ readonly regionTooLarge: boolean;
2365
+ readonly regionTooLargeReason: string;
2366
+ } & {
2367
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2368
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2369
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2370
+ } & {
2371
+ mouseoverExtraInformation: string | undefined;
2372
+ featureIdUnderMouse: undefined | string;
2373
+ subfeatureIdUnderMouse: undefined | string;
2374
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2375
+ } & {
2376
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2377
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2378
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2379
+ } & {
2380
+ readonly renderDelay: number;
2381
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2382
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2383
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2384
+ readonly selectedFeatureId: string | undefined;
2385
+ readonly featureWidgetType: {
2386
+ type: string;
2387
+ id: string;
2388
+ };
2389
+ } & {
2390
+ readonly showTooltipsEnabled: boolean;
2391
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2392
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2393
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2394
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2395
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2396
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2397
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2398
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2399
+ } & {
2400
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2401
+ deleteBlock(key: string): void;
2402
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2403
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2404
+ clearFeatureSelection(): void;
2405
+ setFeatureIdUnderMouse(feature?: string): void;
2406
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2407
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2408
+ setMouseoverExtraInformation(extra?: string): void;
2409
+ setShowLegend(s: boolean): void;
2410
+ setShowTooltips(arg: boolean): void;
2411
+ } & {
2412
+ reload(): Promise<void>;
2413
+ } & {
2414
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2415
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2416
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2417
+ onMouseMove(_: unknown, featureId?: string): void;
2418
+ onMouseLeave(_: unknown): void;
2419
+ onContextMenu(_: unknown): void;
2420
+ };
2421
+ renderProps(): any;
2422
+ } & {
2423
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
2424
+ afterAttach(): void;
2425
+ } & {
2426
+ readonly rendererConfig: Omit<any, symbol>;
2427
+ readonly rendererTypeName: any;
2428
+ } & {
2429
+ renderProps(): any;
2430
+ } & {
2431
+ sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
2432
+ simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
2433
+ featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
2434
+ sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
2435
+ colorByApplied: boolean;
2436
+ featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
2437
+ hasPhased: boolean;
2438
+ sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
2439
+ hoveredGenotype: {
2440
+ genotype: string;
2441
+ name: string;
2442
+ } | undefined;
2443
+ hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
2444
+ treeCanvas: HTMLCanvasElement | undefined;
2445
+ mouseoverCanvas: HTMLCanvasElement | undefined;
2446
+ } & {
2447
+ readonly renderingMode: string;
2448
+ } & {
2449
+ setJexlFilters(f?: string[]): void;
2450
+ setRowHeight(arg: number | "auto"): void;
2451
+ setHoveredGenotype(arg?: {
2452
+ genotype: string;
2453
+ name: string;
2454
+ }): void;
2455
+ setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
2456
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
2457
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
2458
+ setTreeAreaWidth(width: number): void;
2459
+ setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
2460
+ setColorByApplied(value: boolean): void;
2461
+ setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
2462
+ clearLayout(): void;
2463
+ setClusterTree(tree?: string): void;
2464
+ setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
2465
+ setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
2466
+ setSources(sources: import("../shared/types.ts").Source[]): void;
2467
+ setMafFilter(arg: number): void;
2468
+ setShowSidebarLabels(arg: boolean): void;
2469
+ setShowTree(arg: boolean): void;
2470
+ setPhasedMode(arg: string): void;
2471
+ setAutoHeight(auto: boolean): void;
2472
+ setHasPhased(arg: boolean): void;
2473
+ setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
2474
+ setReferenceDrawingMode(arg: string): void;
2475
+ } & {
2476
+ readonly autoHeight: boolean;
2477
+ readonly minorAlleleFrequencyFilter: any;
2478
+ readonly showSidebarLabels: any;
2479
+ readonly showTree: any;
2480
+ readonly referenceDrawingMode: string;
2481
+ activeFilters(): any;
2482
+ readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
2483
+ readonly sources: import("../shared/types.ts").Source[] | undefined;
2484
+ readonly root: any;
2485
+ } & {
2486
+ readonly sourceMap: {
2487
+ [k: string]: import("../shared/types.ts").Source;
2488
+ } | undefined;
2489
+ readonly availableHeight: number;
2490
+ readonly nrow: number;
2491
+ readonly rowHeight: number;
2492
+ readonly hierarchy: any;
2493
+ adapterProps(): any;
2494
+ } & {
2495
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
2496
+ label: string;
2497
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2498
+ muiName: string;
2499
+ };
2500
+ type: string;
2501
+ subMenu: ({
2502
+ label: string;
2503
+ type: string;
2504
+ checked: any;
2505
+ onClick: () => void;
2506
+ disabled?: undefined;
2507
+ helpText?: undefined;
2508
+ } | {
2509
+ label: string;
2510
+ type: string;
2511
+ checked: any;
2512
+ disabled: boolean;
2513
+ onClick: () => void;
2514
+ helpText?: undefined;
2515
+ } | {
2516
+ label: string;
2517
+ helpText: string;
2518
+ type: string;
2519
+ checked: boolean;
2520
+ onClick: () => void;
2521
+ disabled?: undefined;
2522
+ })[];
2523
+ onClick?: undefined;
2524
+ } | {
2525
+ label: string;
2526
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2527
+ muiName: string;
2528
+ };
2529
+ subMenu: ({
2530
+ label: string;
2531
+ disabled: boolean;
2532
+ onClick: () => void;
2533
+ type?: undefined;
2534
+ checked?: undefined;
2535
+ } | {
2536
+ label: string;
2537
+ type: string;
2538
+ checked: boolean;
2539
+ onClick: () => void;
2540
+ disabled?: undefined;
2541
+ })[];
2542
+ type?: undefined;
2543
+ onClick?: undefined;
2544
+ } | {
2545
+ label: string;
2546
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2547
+ muiName: string;
2548
+ };
2549
+ subMenu: ({
2550
+ label: string;
2551
+ helpText: string;
2552
+ type: string;
2553
+ checked: boolean;
2554
+ onClick: () => void;
2555
+ disabled?: undefined;
2556
+ } | {
2557
+ label: string;
2558
+ helpText: string;
2559
+ disabled: boolean;
2560
+ checked: boolean;
2561
+ type: string;
2562
+ onClick: () => void;
2563
+ })[];
2564
+ type?: undefined;
2565
+ onClick?: undefined;
2566
+ } | {
2567
+ label: string;
2568
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2569
+ muiName: string;
2570
+ };
2571
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
2572
+ type?: undefined;
2573
+ onClick?: undefined;
2574
+ } | {
2575
+ label: string;
2576
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2577
+ muiName: string;
2578
+ };
2579
+ onClick: () => void;
2580
+ type?: undefined;
2581
+ subMenu?: undefined;
2582
+ })[];
2583
+ } & {
2584
+ readonly canDisplayLabels: any;
2585
+ readonly totalHeight: number;
2586
+ readonly featuresReady: boolean;
2587
+ getPortableSettings(): {
2588
+ minorAlleleFrequencyFilter: any;
2589
+ showSidebarLabelsSetting: boolean | undefined;
2590
+ showTree: any;
2591
+ renderingMode: string;
2592
+ lengthCutoffFilter: number;
2593
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
2594
+ referenceDrawingMode: string;
2595
+ clusterTree: string | undefined;
2596
+ treeAreaWidth: number;
2597
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
2598
+ height: number;
2599
+ };
2600
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2601
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2602
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2603
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2604
+ } & {
2605
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2606
+ } & {
2607
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2608
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2609
+ } & {
2610
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2611
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2612
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2613
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2614
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2615
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2616
+ }, {
2617
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2618
+ filled: boolean;
2619
+ reactElement: React.ReactElement | undefined;
2620
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2621
+ layout: any;
2622
+ blockStatusMessage: string;
2623
+ error: unknown;
2624
+ message: string | undefined;
2625
+ maxHeightReached: boolean;
2626
+ ReactComponent: ({ model, }: {
2627
+ model: {
2628
+ error?: unknown;
2629
+ reload: () => void;
2630
+ message?: React.ReactNode;
2631
+ statusMessage?: string;
2632
+ reactElement?: React.ReactElement;
2633
+ isRenderingPending?: boolean;
2634
+ };
2635
+ }) => import("react/jsx-runtime").JSX.Element;
2636
+ renderProps: any;
2637
+ renderArgs: Record<string, unknown> | undefined;
2638
+ isRenderingPending: boolean;
2639
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2640
+ } & {
2641
+ doReload(): void;
2642
+ setStatusMessage(message: string): void;
2643
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
2644
+ setMessage(messageText: string): void;
2645
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2646
+ setError(error: unknown): void;
2647
+ reload(): void;
2648
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2649
+ beforeDestroy(): void;
2650
+ } & {
2651
+ readonly statusMessage: any;
2652
+ } & {
2653
+ afterAttach(): void;
2654
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2655
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2656
+ maxFeatureScreenDensity: {
2657
+ type: string;
2658
+ description: string;
2659
+ defaultValue: number;
2660
+ };
2661
+ fetchSizeLimit: {
2662
+ type: string;
2663
+ defaultValue: number;
2664
+ description: string;
2665
+ };
2666
+ height: {
2667
+ type: string;
2668
+ defaultValue: number;
2669
+ description: string;
2670
+ };
2671
+ mouseover: {
2672
+ type: string;
2673
+ description: string;
2674
+ defaultValue: string;
2675
+ contextVariable: string[];
2676
+ };
2677
+ jexlFilters: {
2678
+ type: string;
2679
+ description: string;
2680
+ defaultValue: never[];
2681
+ };
2682
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2683
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2684
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2685
+ } & {
2686
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBareDisplay">;
2687
+ configuration: AnyConfigurationSchemaType;
2688
+ } & {
2689
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
2690
+ layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
2691
+ configuration: AnyConfigurationSchemaType;
2692
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2693
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2694
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2695
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2696
+ rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
2697
+ lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2698
+ jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
2699
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2700
+ clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2701
+ treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2702
+ lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2703
+ }, {
2704
+ rendererTypeName: string;
2705
+ error: unknown;
2706
+ statusMessage: string | undefined;
2707
+ } & {
2708
+ readonly RenderingComponent: React.FC<{
2709
+ model: {
2710
+ id: string;
2711
+ type: string;
2712
+ rpcDriverName: string | undefined;
2713
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2714
+ rendererTypeName: string;
2715
+ error: unknown;
2716
+ statusMessage: string | undefined;
2717
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2718
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2719
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2720
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2721
+ }, {
2722
+ rendererTypeName: string;
2723
+ error: unknown;
2724
+ statusMessage: string | undefined;
2725
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2726
+ onHorizontalScroll?: () => void;
2727
+ blockState?: Record<string, any>;
2728
+ }>;
2729
+ readonly DisplayBlurb: React.FC<{
2730
+ model: {
2731
+ id: string;
2732
+ type: string;
2733
+ rpcDriverName: string | undefined;
2734
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2735
+ rendererTypeName: string;
2736
+ error: unknown;
2737
+ statusMessage: string | undefined;
2738
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2739
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2740
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2741
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2742
+ }, {
2743
+ rendererTypeName: string;
2744
+ error: unknown;
2745
+ statusMessage: string | undefined;
2746
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2747
+ }> | null;
2748
+ readonly adapterConfig: any;
2749
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2750
+ readonly isMinimized: boolean;
2751
+ readonly parentDisplay: any;
2752
+ readonly effectiveRpcDriverName: any;
2753
+ } & {
2754
+ renderProps(): any;
2755
+ renderingProps(): {
2756
+ displayModel: {
2757
+ id: string;
2758
+ type: string;
2759
+ rpcDriverName: string | undefined;
2760
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2761
+ rendererTypeName: string;
2762
+ error: unknown;
2763
+ statusMessage: string | undefined;
2764
+ } & {
2765
+ readonly RenderingComponent: React.FC<{
2766
+ model: {
2767
+ id: string;
2768
+ type: string;
2769
+ rpcDriverName: string | undefined;
2770
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2771
+ rendererTypeName: string;
2772
+ error: unknown;
2773
+ statusMessage: string | undefined;
2774
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2775
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2776
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2777
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2778
+ }, {
2779
+ rendererTypeName: string;
2780
+ error: unknown;
2781
+ statusMessage: string | undefined;
2782
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2783
+ onHorizontalScroll?: () => void;
2784
+ blockState?: Record<string, any>;
2785
+ }>;
2786
+ readonly DisplayBlurb: React.FC<{
2787
+ model: {
2788
+ id: string;
2789
+ type: string;
2790
+ rpcDriverName: string | undefined;
2791
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2792
+ rendererTypeName: string;
2793
+ error: unknown;
2794
+ statusMessage: string | undefined;
2795
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2796
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2797
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2798
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2799
+ }, {
2800
+ rendererTypeName: string;
2801
+ error: unknown;
2802
+ statusMessage: string | undefined;
2803
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2804
+ }> | null;
2805
+ readonly adapterConfig: any;
2806
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2807
+ readonly isMinimized: boolean;
2808
+ readonly parentDisplay: any;
2809
+ readonly effectiveRpcDriverName: any;
2810
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2811
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2812
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2813
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2814
+ }, {
2815
+ rendererTypeName: string;
2816
+ error: unknown;
2817
+ statusMessage: string | undefined;
2818
+ } & {
2819
+ readonly RenderingComponent: React.FC<{
2820
+ model: {
2821
+ id: string;
2822
+ type: string;
2823
+ rpcDriverName: string | undefined;
2824
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2825
+ rendererTypeName: string;
2826
+ error: unknown;
2827
+ statusMessage: string | undefined;
2828
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2829
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2830
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2831
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2832
+ }, {
2833
+ rendererTypeName: string;
2834
+ error: unknown;
2835
+ statusMessage: string | undefined;
2836
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2837
+ onHorizontalScroll?: () => void;
2838
+ blockState?: Record<string, any>;
2839
+ }>;
2840
+ readonly DisplayBlurb: React.FC<{
2841
+ model: {
2842
+ id: string;
2843
+ type: string;
2844
+ rpcDriverName: string | undefined;
2845
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2846
+ rendererTypeName: string;
2847
+ error: unknown;
2848
+ statusMessage: string | undefined;
2849
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2850
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2851
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2852
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2853
+ }, {
2854
+ rendererTypeName: string;
2855
+ error: unknown;
2856
+ statusMessage: string | undefined;
2857
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2858
+ }> | null;
2859
+ readonly adapterConfig: any;
2860
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2861
+ readonly isMinimized: boolean;
2862
+ readonly parentDisplay: any;
2863
+ readonly effectiveRpcDriverName: any;
2864
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2865
+ };
2866
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2867
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2868
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2869
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2870
+ regionCannotBeRendered(): null;
2871
+ } & {
2872
+ setStatusMessage(arg?: string): void;
2873
+ setError(error?: unknown): void;
2874
+ setRpcDriverName(rpcDriverName: string): void;
2875
+ reload(): void;
2876
+ } & {
2877
+ scrollTop: number;
2878
+ } & {
2879
+ readonly height: number;
2880
+ } & {
2881
+ setScrollTop(scrollTop: number): void;
2882
+ setHeight(displayHeight: number): number;
2883
+ resizeHeight(distance: number): number;
2884
+ } & {
2885
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2886
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2887
+ currStatsBpPerPx: number;
2888
+ } & {
2889
+ readonly currentBytesRequested: number;
2890
+ readonly currentFeatureScreenDensity: number;
2891
+ readonly maxFeatureScreenDensity: any;
2892
+ readonly featureDensityStatsReady: boolean;
2893
+ readonly maxAllowableBytes: number;
2894
+ } & {
2895
+ afterAttach(): void;
2896
+ } & {
2897
+ setCurrStatsBpPerPx(n: number): void;
2898
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2899
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2900
+ setFeatureDensityStatsP(arg: any): void;
2901
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2902
+ clearFeatureDensityStats(): void;
2903
+ } & {
2904
+ readonly regionTooLarge: boolean;
2905
+ readonly regionTooLargeReason: string;
2906
+ } & {
2907
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2908
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2909
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2910
+ } & {
2911
+ mouseoverExtraInformation: string | undefined;
2912
+ featureIdUnderMouse: undefined | string;
2913
+ subfeatureIdUnderMouse: undefined | string;
2914
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2915
+ } & {
2916
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2917
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2918
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2919
+ } & {
2920
+ readonly renderDelay: number;
2921
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2922
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2923
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2924
+ readonly selectedFeatureId: string | undefined;
2925
+ readonly featureWidgetType: {
2926
+ type: string;
2927
+ id: string;
2928
+ };
2929
+ } & {
2930
+ readonly showTooltipsEnabled: boolean;
2931
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2932
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2933
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2934
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2935
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2936
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2937
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2938
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2939
+ } & {
2940
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2941
+ deleteBlock(key: string): void;
2942
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2943
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2944
+ clearFeatureSelection(): void;
2945
+ setFeatureIdUnderMouse(feature?: string): void;
2946
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2947
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2948
+ setMouseoverExtraInformation(extra?: string): void;
2949
+ setShowLegend(s: boolean): void;
2950
+ setShowTooltips(arg: boolean): void;
2951
+ } & {
2952
+ reload(): Promise<void>;
2953
+ } & {
2954
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2955
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2956
+ } & {
2957
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2958
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2959
+ renderingProps(): {
2960
+ displayModel: {
2961
+ id: string;
2962
+ type: string;
2963
+ rpcDriverName: string | undefined;
2964
+ heightPreConfig: number | undefined;
2965
+ userBpPerPxLimit: number | undefined;
2966
+ userByteSizeLimit: number | undefined;
2967
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
2968
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2969
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2970
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2971
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2972
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2973
+ }, {
2974
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2975
+ filled: boolean;
2976
+ reactElement: React.ReactElement | undefined;
2977
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2978
+ layout: any;
2979
+ blockStatusMessage: string;
2980
+ error: unknown;
2981
+ message: string | undefined;
2982
+ maxHeightReached: boolean;
2983
+ ReactComponent: ({ model, }: {
2984
+ model: {
2985
+ error?: unknown;
2986
+ reload: () => void;
2987
+ message?: React.ReactNode;
2988
+ statusMessage?: string;
2989
+ reactElement?: React.ReactElement;
2990
+ isRenderingPending?: boolean;
2991
+ };
2992
+ }) => import("react/jsx-runtime").JSX.Element;
2993
+ renderProps: any;
2994
+ renderArgs: Record<string, unknown> | undefined;
2995
+ isRenderingPending: boolean;
2996
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2997
+ } & {
2998
+ doReload(): void;
2999
+ setStatusMessage(message: string): void;
3000
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3001
+ setMessage(messageText: string): void;
3002
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3003
+ setError(error: unknown): void;
3004
+ reload(): void;
3005
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3006
+ beforeDestroy(): void;
3007
+ } & {
3008
+ readonly statusMessage: any;
3009
+ } & {
3010
+ afterAttach(): void;
3011
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3012
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3013
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3014
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3015
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3016
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3017
+ }, {
3018
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
3019
+ filled: boolean;
3020
+ reactElement: React.ReactElement | undefined;
3021
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
3022
+ layout: any;
3023
+ blockStatusMessage: string;
3024
+ error: unknown;
3025
+ message: string | undefined;
3026
+ maxHeightReached: boolean;
3027
+ ReactComponent: ({ model, }: {
3028
+ model: {
3029
+ error?: unknown;
3030
+ reload: () => void;
3031
+ message?: React.ReactNode;
3032
+ statusMessage?: string;
3033
+ reactElement?: React.ReactElement;
3034
+ isRenderingPending?: boolean;
3035
+ };
3036
+ }) => import("react/jsx-runtime").JSX.Element;
3037
+ renderProps: any;
3038
+ renderArgs: Record<string, unknown> | undefined;
3039
+ isRenderingPending: boolean;
3040
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3041
+ } & {
3042
+ doReload(): void;
3043
+ setStatusMessage(message: string): void;
3044
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3045
+ setMessage(messageText: string): void;
3046
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3047
+ setError(error: unknown): void;
3048
+ reload(): void;
3049
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3050
+ beforeDestroy(): void;
3051
+ } & {
3052
+ readonly statusMessage: any;
3053
+ } & {
3054
+ afterAttach(): void;
3055
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
3056
+ configuration: {
3057
+ [x: string]: any;
3058
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3059
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3060
+ [x: string]: any;
3061
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3062
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3063
+ [x: string]: any;
3064
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3065
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3066
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3067
+ maxFeatureScreenDensity: {
3068
+ type: string;
3069
+ description: string;
3070
+ defaultValue: number;
3071
+ };
3072
+ fetchSizeLimit: {
3073
+ type: string;
3074
+ defaultValue: number;
3075
+ description: string;
3076
+ };
3077
+ height: {
3078
+ type: string;
3079
+ defaultValue: number;
3080
+ description: string;
3081
+ };
3082
+ mouseover: {
3083
+ type: string;
3084
+ description: string;
3085
+ defaultValue: string;
3086
+ contextVariable: string[];
3087
+ };
3088
+ jexlFilters: {
3089
+ type: string;
3090
+ description: string;
3091
+ defaultValue: never[];
3092
+ };
3093
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
3094
+ showLegend: boolean | undefined;
3095
+ showTooltips: boolean | undefined;
3096
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3097
+ rendererTypeName: string;
3098
+ error: unknown;
3099
+ statusMessage: string | undefined;
3100
+ } & {
3101
+ readonly RenderingComponent: React.FC<{
3102
+ model: {
3103
+ id: string;
3104
+ type: string;
3105
+ rpcDriverName: string | undefined;
3106
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3107
+ rendererTypeName: string;
3108
+ error: unknown;
3109
+ statusMessage: string | undefined;
3110
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3111
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3112
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3113
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3114
+ }, {
3115
+ rendererTypeName: string;
3116
+ error: unknown;
3117
+ statusMessage: string | undefined;
3118
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3119
+ onHorizontalScroll?: () => void;
3120
+ blockState?: Record<string, any>;
3121
+ }>;
3122
+ readonly DisplayBlurb: React.FC<{
3123
+ model: {
3124
+ id: string;
3125
+ type: string;
3126
+ rpcDriverName: string | undefined;
3127
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3128
+ rendererTypeName: string;
3129
+ error: unknown;
3130
+ statusMessage: string | undefined;
3131
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3132
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3133
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3134
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3135
+ }, {
3136
+ rendererTypeName: string;
3137
+ error: unknown;
3138
+ statusMessage: string | undefined;
3139
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3140
+ }> | null;
3141
+ readonly adapterConfig: any;
3142
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3143
+ readonly isMinimized: boolean;
3144
+ readonly parentDisplay: any;
3145
+ readonly effectiveRpcDriverName: any;
3146
+ } & {
3147
+ renderProps(): any;
3148
+ renderingProps(): {
3149
+ displayModel: {
3150
+ id: string;
3151
+ type: string;
3152
+ rpcDriverName: string | undefined;
3153
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3154
+ rendererTypeName: string;
3155
+ error: unknown;
3156
+ statusMessage: string | undefined;
3157
+ } & {
3158
+ readonly RenderingComponent: React.FC<{
3159
+ model: {
3160
+ id: string;
3161
+ type: string;
3162
+ rpcDriverName: string | undefined;
3163
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3164
+ rendererTypeName: string;
3165
+ error: unknown;
3166
+ statusMessage: string | undefined;
3167
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3168
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3169
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3170
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3171
+ }, {
3172
+ rendererTypeName: string;
3173
+ error: unknown;
3174
+ statusMessage: string | undefined;
3175
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3176
+ onHorizontalScroll?: () => void;
3177
+ blockState?: Record<string, any>;
3178
+ }>;
3179
+ readonly DisplayBlurb: React.FC<{
3180
+ model: {
3181
+ id: string;
3182
+ type: string;
3183
+ rpcDriverName: string | undefined;
3184
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3185
+ rendererTypeName: string;
3186
+ error: unknown;
3187
+ statusMessage: string | undefined;
3188
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3189
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3190
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3191
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3192
+ }, {
3193
+ rendererTypeName: string;
3194
+ error: unknown;
3195
+ statusMessage: string | undefined;
3196
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3197
+ }> | null;
3198
+ readonly adapterConfig: any;
3199
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3200
+ readonly isMinimized: boolean;
3201
+ readonly parentDisplay: any;
3202
+ readonly effectiveRpcDriverName: any;
3203
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3204
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3205
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3206
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3207
+ }, {
3208
+ rendererTypeName: string;
3209
+ error: unknown;
3210
+ statusMessage: string | undefined;
3211
+ } & {
3212
+ readonly RenderingComponent: React.FC<{
3213
+ model: {
3214
+ id: string;
3215
+ type: string;
3216
+ rpcDriverName: string | undefined;
3217
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3218
+ rendererTypeName: string;
3219
+ error: unknown;
3220
+ statusMessage: string | undefined;
3221
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3222
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3223
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3224
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3225
+ }, {
3226
+ rendererTypeName: string;
3227
+ error: unknown;
3228
+ statusMessage: string | undefined;
3229
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3230
+ onHorizontalScroll?: () => void;
3231
+ blockState?: Record<string, any>;
3232
+ }>;
3233
+ readonly DisplayBlurb: React.FC<{
3234
+ model: {
3235
+ id: string;
3236
+ type: string;
3237
+ rpcDriverName: string | undefined;
3238
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3239
+ rendererTypeName: string;
3240
+ error: unknown;
3241
+ statusMessage: string | undefined;
3242
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3243
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3244
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3245
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3246
+ }, {
3247
+ rendererTypeName: string;
3248
+ error: unknown;
3249
+ statusMessage: string | undefined;
3250
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3251
+ }> | null;
3252
+ readonly adapterConfig: any;
3253
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3254
+ readonly isMinimized: boolean;
3255
+ readonly parentDisplay: any;
3256
+ readonly effectiveRpcDriverName: any;
3257
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3258
+ };
3259
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3260
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3261
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3262
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3263
+ regionCannotBeRendered(): null;
3264
+ } & {
3265
+ setStatusMessage(arg?: string): void;
3266
+ setError(error?: unknown): void;
3267
+ setRpcDriverName(rpcDriverName: string): void;
3268
+ reload(): void;
3269
+ } & {
3270
+ scrollTop: number;
3271
+ } & {
3272
+ readonly height: number;
3273
+ } & {
3274
+ setScrollTop(scrollTop: number): void;
3275
+ setHeight(displayHeight: number): number;
3276
+ resizeHeight(distance: number): number;
3277
+ } & {
3278
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3279
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3280
+ currStatsBpPerPx: number;
3281
+ } & {
3282
+ readonly currentBytesRequested: number;
3283
+ readonly currentFeatureScreenDensity: number;
3284
+ readonly maxFeatureScreenDensity: any;
3285
+ readonly featureDensityStatsReady: boolean;
3286
+ readonly maxAllowableBytes: number;
3287
+ } & {
3288
+ afterAttach(): void;
3289
+ } & {
3290
+ setCurrStatsBpPerPx(n: number): void;
3291
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3292
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3293
+ setFeatureDensityStatsP(arg: any): void;
3294
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3295
+ clearFeatureDensityStats(): void;
3296
+ } & {
3297
+ readonly regionTooLarge: boolean;
3298
+ readonly regionTooLargeReason: string;
3299
+ } & {
3300
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3301
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3302
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3303
+ } & {
3304
+ mouseoverExtraInformation: string | undefined;
3305
+ featureIdUnderMouse: undefined | string;
3306
+ subfeatureIdUnderMouse: undefined | string;
3307
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
3308
+ } & {
3309
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3310
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3311
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3312
+ } & {
3313
+ readonly renderDelay: number;
3314
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3315
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3316
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3317
+ readonly selectedFeatureId: string | undefined;
3318
+ readonly featureWidgetType: {
3319
+ type: string;
3320
+ id: string;
3321
+ };
3322
+ } & {
3323
+ readonly showTooltipsEnabled: boolean;
3324
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
3325
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
3326
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
3327
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3328
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3329
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3330
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3331
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3332
+ } & {
3333
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3334
+ deleteBlock(key: string): void;
3335
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
3336
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
3337
+ clearFeatureSelection(): void;
3338
+ setFeatureIdUnderMouse(feature?: string): void;
3339
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3340
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
3341
+ setMouseoverExtraInformation(extra?: string): void;
3342
+ setShowLegend(s: boolean): void;
3343
+ setShowTooltips(arg: boolean): void;
3344
+ } & {
3345
+ reload(): Promise<void>;
3346
+ } & {
3347
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3348
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3349
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3350
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3351
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3352
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3353
+ } & {
3354
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3355
+ } & {
3356
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3357
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3358
+ } & {
3359
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3360
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3361
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3362
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3363
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3364
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3365
+ }, {
3366
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
3367
+ filled: boolean;
3368
+ reactElement: React.ReactElement | undefined;
3369
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
3370
+ layout: any;
3371
+ blockStatusMessage: string;
3372
+ error: unknown;
3373
+ message: string | undefined;
3374
+ maxHeightReached: boolean;
3375
+ ReactComponent: ({ model, }: {
3376
+ model: {
3377
+ error?: unknown;
3378
+ reload: () => void;
3379
+ message?: React.ReactNode;
3380
+ statusMessage?: string;
3381
+ reactElement?: React.ReactElement;
3382
+ isRenderingPending?: boolean;
3383
+ };
3384
+ }) => import("react/jsx-runtime").JSX.Element;
3385
+ renderProps: any;
3386
+ renderArgs: Record<string, unknown> | undefined;
3387
+ isRenderingPending: boolean;
3388
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3389
+ } & {
3390
+ doReload(): void;
3391
+ setStatusMessage(message: string): void;
3392
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3393
+ setMessage(messageText: string): void;
3394
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3395
+ setError(error: unknown): void;
3396
+ reload(): void;
3397
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3398
+ beforeDestroy(): void;
3399
+ } & {
3400
+ readonly statusMessage: any;
3401
+ } & {
3402
+ afterAttach(): void;
3403
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3404
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3405
+ maxFeatureScreenDensity: {
3406
+ type: string;
3407
+ description: string;
3408
+ defaultValue: number;
3409
+ };
3410
+ fetchSizeLimit: {
3411
+ type: string;
3412
+ defaultValue: number;
3413
+ description: string;
3414
+ };
3415
+ height: {
3416
+ type: string;
3417
+ defaultValue: number;
3418
+ description: string;
3419
+ };
3420
+ mouseover: {
3421
+ type: string;
3422
+ description: string;
3423
+ defaultValue: string;
3424
+ contextVariable: string[];
3425
+ };
3426
+ jexlFilters: {
3427
+ type: string;
3428
+ description: string;
3429
+ defaultValue: never[];
3430
+ };
3431
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
3432
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3433
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3434
+ }, {
3435
+ rendererTypeName: string;
3436
+ error: unknown;
3437
+ statusMessage: string | undefined;
3438
+ } & {
3439
+ readonly RenderingComponent: React.FC<{
3440
+ model: {
3441
+ id: string;
3442
+ type: string;
3443
+ rpcDriverName: string | undefined;
3444
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3445
+ rendererTypeName: string;
3446
+ error: unknown;
3447
+ statusMessage: string | undefined;
3448
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3449
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3450
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3451
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3452
+ }, {
3453
+ rendererTypeName: string;
3454
+ error: unknown;
3455
+ statusMessage: string | undefined;
3456
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3457
+ onHorizontalScroll?: () => void;
3458
+ blockState?: Record<string, any>;
3459
+ }>;
3460
+ readonly DisplayBlurb: React.FC<{
3461
+ model: {
3462
+ id: string;
3463
+ type: string;
3464
+ rpcDriverName: string | undefined;
3465
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3466
+ rendererTypeName: string;
3467
+ error: unknown;
3468
+ statusMessage: string | undefined;
3469
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3470
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3471
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3472
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3473
+ }, {
3474
+ rendererTypeName: string;
3475
+ error: unknown;
3476
+ statusMessage: string | undefined;
3477
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3478
+ }> | null;
3479
+ readonly adapterConfig: any;
3480
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3481
+ readonly isMinimized: boolean;
3482
+ readonly parentDisplay: any;
3483
+ readonly effectiveRpcDriverName: any;
3484
+ } & {
3485
+ renderProps(): any;
3486
+ renderingProps(): {
3487
+ displayModel: {
3488
+ id: string;
3489
+ type: string;
3490
+ rpcDriverName: string | undefined;
3491
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3492
+ rendererTypeName: string;
3493
+ error: unknown;
3494
+ statusMessage: string | undefined;
3495
+ } & {
3496
+ readonly RenderingComponent: React.FC<{
3497
+ model: {
3498
+ id: string;
3499
+ type: string;
3500
+ rpcDriverName: string | undefined;
3501
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3502
+ rendererTypeName: string;
3503
+ error: unknown;
3504
+ statusMessage: string | undefined;
3505
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3506
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3507
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3508
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3509
+ }, {
3510
+ rendererTypeName: string;
3511
+ error: unknown;
3512
+ statusMessage: string | undefined;
3513
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3514
+ onHorizontalScroll?: () => void;
3515
+ blockState?: Record<string, any>;
3516
+ }>;
3517
+ readonly DisplayBlurb: React.FC<{
3518
+ model: {
3519
+ id: string;
3520
+ type: string;
3521
+ rpcDriverName: string | undefined;
3522
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3523
+ rendererTypeName: string;
3524
+ error: unknown;
3525
+ statusMessage: string | undefined;
3526
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3527
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3528
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3529
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3530
+ }, {
3531
+ rendererTypeName: string;
3532
+ error: unknown;
3533
+ statusMessage: string | undefined;
3534
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3535
+ }> | null;
3536
+ readonly adapterConfig: any;
3537
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3538
+ readonly isMinimized: boolean;
3539
+ readonly parentDisplay: any;
3540
+ readonly effectiveRpcDriverName: any;
3541
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3542
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3543
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3544
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3545
+ }, {
3546
+ rendererTypeName: string;
3547
+ error: unknown;
3548
+ statusMessage: string | undefined;
3549
+ } & {
3550
+ readonly RenderingComponent: React.FC<{
3551
+ model: {
3552
+ id: string;
3553
+ type: string;
3554
+ rpcDriverName: string | undefined;
3555
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3556
+ rendererTypeName: string;
3557
+ error: unknown;
3558
+ statusMessage: string | undefined;
3559
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3560
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3561
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3562
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3563
+ }, {
3564
+ rendererTypeName: string;
3565
+ error: unknown;
3566
+ statusMessage: string | undefined;
3567
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3568
+ onHorizontalScroll?: () => void;
3569
+ blockState?: Record<string, any>;
3570
+ }>;
3571
+ readonly DisplayBlurb: React.FC<{
3572
+ model: {
3573
+ id: string;
3574
+ type: string;
3575
+ rpcDriverName: string | undefined;
3576
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3577
+ rendererTypeName: string;
3578
+ error: unknown;
3579
+ statusMessage: string | undefined;
3580
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3581
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3582
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3583
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3584
+ }, {
3585
+ rendererTypeName: string;
3586
+ error: unknown;
3587
+ statusMessage: string | undefined;
3588
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3589
+ }> | null;
3590
+ readonly adapterConfig: any;
3591
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3592
+ readonly isMinimized: boolean;
3593
+ readonly parentDisplay: any;
3594
+ readonly effectiveRpcDriverName: any;
3595
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3596
+ };
3597
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3598
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3599
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3600
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3601
+ regionCannotBeRendered(): null;
3602
+ } & {
3603
+ setStatusMessage(arg?: string): void;
3604
+ setError(error?: unknown): void;
3605
+ setRpcDriverName(rpcDriverName: string): void;
3606
+ reload(): void;
3607
+ } & {
3608
+ scrollTop: number;
3609
+ } & {
3610
+ readonly height: number;
3611
+ } & {
3612
+ setScrollTop(scrollTop: number): void;
3613
+ setHeight(displayHeight: number): number;
3614
+ resizeHeight(distance: number): number;
3615
+ } & {
3616
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3617
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3618
+ currStatsBpPerPx: number;
3619
+ } & {
3620
+ readonly currentBytesRequested: number;
3621
+ readonly currentFeatureScreenDensity: number;
3622
+ readonly maxFeatureScreenDensity: any;
3623
+ readonly featureDensityStatsReady: boolean;
3624
+ readonly maxAllowableBytes: number;
3625
+ } & {
3626
+ afterAttach(): void;
3627
+ } & {
3628
+ setCurrStatsBpPerPx(n: number): void;
3629
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3630
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3631
+ setFeatureDensityStatsP(arg: any): void;
3632
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3633
+ clearFeatureDensityStats(): void;
3634
+ } & {
3635
+ readonly regionTooLarge: boolean;
3636
+ readonly regionTooLargeReason: string;
3637
+ } & {
3638
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3639
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3640
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3641
+ } & {
3642
+ mouseoverExtraInformation: string | undefined;
3643
+ featureIdUnderMouse: undefined | string;
3644
+ subfeatureIdUnderMouse: undefined | string;
3645
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
3646
+ } & {
3647
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3648
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3649
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3650
+ } & {
3651
+ readonly renderDelay: number;
3652
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3653
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3654
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3655
+ readonly selectedFeatureId: string | undefined;
3656
+ readonly featureWidgetType: {
3657
+ type: string;
3658
+ id: string;
3659
+ };
3660
+ } & {
3661
+ readonly showTooltipsEnabled: boolean;
3662
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
3663
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
3664
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
3665
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3666
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3667
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3668
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3669
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3670
+ } & {
3671
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3672
+ deleteBlock(key: string): void;
3673
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
3674
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
3675
+ clearFeatureSelection(): void;
3676
+ setFeatureIdUnderMouse(feature?: string): void;
3677
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3678
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
3679
+ setMouseoverExtraInformation(extra?: string): void;
3680
+ setShowLegend(s: boolean): void;
3681
+ setShowTooltips(arg: boolean): void;
3682
+ } & {
3683
+ reload(): Promise<void>;
3684
+ } & {
3685
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3686
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3687
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3688
+ onMouseMove(_: unknown, featureId?: string): void;
3689
+ onMouseLeave(_: unknown): void;
3690
+ onContextMenu(_: unknown): void;
3691
+ };
3692
+ renderProps(): any;
3693
+ } & {
3694
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
3695
+ afterAttach(): void;
3696
+ } & {
3697
+ readonly rendererConfig: Omit<any, symbol>;
3698
+ readonly rendererTypeName: any;
3699
+ } & {
3700
+ renderProps(): any;
3701
+ } & {
3702
+ sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
3703
+ simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
3704
+ featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
3705
+ sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
3706
+ colorByApplied: boolean;
3707
+ featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
3708
+ hasPhased: boolean;
3709
+ sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
3710
+ hoveredGenotype: {
3711
+ genotype: string;
3712
+ name: string;
3713
+ } | undefined;
3714
+ hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
3715
+ treeCanvas: HTMLCanvasElement | undefined;
3716
+ mouseoverCanvas: HTMLCanvasElement | undefined;
3717
+ } & {
3718
+ readonly renderingMode: string;
3719
+ } & {
3720
+ setJexlFilters(f?: string[]): void;
3721
+ setRowHeight(arg: number | "auto"): void;
3722
+ setHoveredGenotype(arg?: {
3723
+ genotype: string;
3724
+ name: string;
3725
+ }): void;
3726
+ setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
3727
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
3728
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
3729
+ setTreeAreaWidth(width: number): void;
3730
+ setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
3731
+ setColorByApplied(value: boolean): void;
3732
+ setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
3733
+ clearLayout(): void;
3734
+ setClusterTree(tree?: string): void;
3735
+ setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
3736
+ setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
3737
+ setSources(sources: import("../shared/types.ts").Source[]): void;
3738
+ setMafFilter(arg: number): void;
3739
+ setShowSidebarLabels(arg: boolean): void;
3740
+ setShowTree(arg: boolean): void;
3741
+ setPhasedMode(arg: string): void;
3742
+ setAutoHeight(auto: boolean): void;
3743
+ setHasPhased(arg: boolean): void;
3744
+ setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
3745
+ setReferenceDrawingMode(arg: string): void;
3746
+ } & {
3747
+ readonly autoHeight: boolean;
3748
+ readonly minorAlleleFrequencyFilter: any;
3749
+ readonly showSidebarLabels: any;
3750
+ readonly showTree: any;
3751
+ readonly referenceDrawingMode: string;
3752
+ activeFilters(): any;
3753
+ readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
3754
+ readonly sources: import("../shared/types.ts").Source[] | undefined;
3755
+ readonly root: any;
3756
+ } & {
3757
+ readonly sourceMap: {
3758
+ [k: string]: import("../shared/types.ts").Source;
3759
+ } | undefined;
3760
+ readonly availableHeight: number;
3761
+ readonly nrow: number;
3762
+ readonly rowHeight: number;
3763
+ readonly hierarchy: any;
3764
+ adapterProps(): any;
3765
+ } & {
3766
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
3767
+ label: string;
3768
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3769
+ muiName: string;
3770
+ };
3771
+ type: string;
3772
+ subMenu: ({
3773
+ label: string;
3774
+ type: string;
3775
+ checked: any;
3776
+ onClick: () => void;
3777
+ disabled?: undefined;
3778
+ helpText?: undefined;
3779
+ } | {
3780
+ label: string;
3781
+ type: string;
3782
+ checked: any;
3783
+ disabled: boolean;
3784
+ onClick: () => void;
3785
+ helpText?: undefined;
3786
+ } | {
3787
+ label: string;
3788
+ helpText: string;
3789
+ type: string;
3790
+ checked: boolean;
3791
+ onClick: () => void;
3792
+ disabled?: undefined;
3793
+ })[];
3794
+ onClick?: undefined;
3795
+ } | {
3796
+ label: string;
3797
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3798
+ muiName: string;
3799
+ };
3800
+ subMenu: ({
3801
+ label: string;
3802
+ disabled: boolean;
3803
+ onClick: () => void;
3804
+ type?: undefined;
3805
+ checked?: undefined;
3806
+ } | {
3807
+ label: string;
3808
+ type: string;
3809
+ checked: boolean;
3810
+ onClick: () => void;
3811
+ disabled?: undefined;
3812
+ })[];
3813
+ type?: undefined;
3814
+ onClick?: undefined;
3815
+ } | {
3816
+ label: string;
3817
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3818
+ muiName: string;
3819
+ };
3820
+ subMenu: ({
3821
+ label: string;
3822
+ helpText: string;
3823
+ type: string;
3824
+ checked: boolean;
3825
+ onClick: () => void;
3826
+ disabled?: undefined;
3827
+ } | {
3828
+ label: string;
3829
+ helpText: string;
3830
+ disabled: boolean;
3831
+ checked: boolean;
3832
+ type: string;
3833
+ onClick: () => void;
3834
+ })[];
3835
+ type?: undefined;
3836
+ onClick?: undefined;
3837
+ } | {
3838
+ label: string;
3839
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3840
+ muiName: string;
3841
+ };
3842
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
3843
+ type?: undefined;
3844
+ onClick?: undefined;
3845
+ } | {
3846
+ label: string;
3847
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3848
+ muiName: string;
3849
+ };
3850
+ onClick: () => void;
3851
+ type?: undefined;
3852
+ subMenu?: undefined;
3853
+ })[];
3854
+ } & {
3855
+ readonly canDisplayLabels: any;
3856
+ readonly totalHeight: number;
3857
+ readonly featuresReady: boolean;
3858
+ getPortableSettings(): {
3859
+ minorAlleleFrequencyFilter: any;
3860
+ showSidebarLabelsSetting: boolean | undefined;
3861
+ showTree: any;
3862
+ renderingMode: string;
3863
+ lengthCutoffFilter: number;
3864
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
3865
+ referenceDrawingMode: string;
3866
+ clusterTree: string | undefined;
3867
+ treeAreaWidth: number;
3868
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
3869
+ height: number;
3870
+ };
3871
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3872
+ onFeatureClick(_: React.MouseEvent, featureId: string): Promise<void>;
3873
+ };
3874
+ legendItems(): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3875
+ } & {
3876
+ afterAttach(): void;
3877
+ } & {
3878
+ readonly rendererTypeName: string;
3879
+ readonly featureWidgetType: {
3880
+ type: string;
3881
+ id: string;
3882
+ };
1279
3883
  } & {
1280
3884
  renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
1281
3885
  }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
@@ -1296,14 +3900,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1296
3900
  showLegend: boolean | undefined;
1297
3901
  showTooltips: boolean | undefined;
1298
3902
  layout: import("../shared/types.ts").Source[];
1299
- minorAlleleFrequencyFilter: number;
1300
- showSidebarLabelsSetting: boolean;
1301
- showTree: boolean;
1302
- renderingMode: string;
3903
+ minorAlleleFrequencyFilterSetting: number | undefined;
3904
+ showSidebarLabelsSetting: boolean | undefined;
3905
+ showTreeSetting: boolean | undefined;
3906
+ renderingModeSetting: string | undefined;
1303
3907
  rowHeightMode: number | "auto";
1304
3908
  lengthCutoffFilter: number;
1305
3909
  jexlFilters: string[] | undefined;
1306
- referenceDrawingMode: string;
3910
+ referenceDrawingModeSetting: string | undefined;
1307
3911
  clusterTree: string | undefined;
1308
3912
  treeAreaWidth: number;
1309
3913
  lineZoneHeight: number;