@jbrowse/plugin-variants 4.0.4 → 4.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (128) hide show
  1. package/esm/LDDisplay/SharedLDConfigSchema.d.ts +102 -0
  2. package/esm/LDDisplay/SharedLDConfigSchema.js +83 -0
  3. package/esm/LDDisplay/afterAttach.d.ts +2 -0
  4. package/esm/LDDisplay/afterAttach.js +123 -0
  5. package/esm/LDDisplay/components/BaseDisplayComponent.d.ts +15 -0
  6. package/esm/LDDisplay/components/BaseDisplayComponent.js +39 -0
  7. package/esm/LDDisplay/components/LDColorLegend.d.ts +15 -0
  8. package/esm/LDDisplay/components/LDColorLegend.js +75 -0
  9. package/esm/LDDisplay/components/LDDisplayComponent.d.ts +5 -0
  10. package/esm/LDDisplay/components/LDDisplayComponent.js +203 -0
  11. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +16 -0
  12. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.js +109 -0
  13. package/esm/LDDisplay/configSchema1.d.ts +115 -0
  14. package/esm/LDDisplay/configSchema1.js +16 -0
  15. package/esm/LDDisplay/configSchema2.d.ts +115 -0
  16. package/esm/LDDisplay/configSchema2.js +16 -0
  17. package/esm/LDDisplay/index.d.ts +2 -0
  18. package/esm/LDDisplay/index.js +35 -0
  19. package/esm/LDDisplay/renderSvg.d.ts +3 -0
  20. package/esm/LDDisplay/renderSvg.js +36 -0
  21. package/esm/LDDisplay/shared.d.ts +367 -0
  22. package/esm/LDDisplay/shared.js +467 -0
  23. package/esm/LDDisplay/stateModel1.d.ts +365 -0
  24. package/esm/LDDisplay/stateModel1.js +10 -0
  25. package/esm/LDDisplay/stateModel2.d.ts +365 -0
  26. package/esm/LDDisplay/stateModel2.js +10 -0
  27. package/esm/LDRenderer/LDRenderer.d.ts +30 -0
  28. package/esm/LDRenderer/LDRenderer.js +109 -0
  29. package/esm/LDRenderer/components/LDRendering.d.ts +2 -0
  30. package/esm/LDRenderer/components/LDRendering.js +4 -0
  31. package/esm/LDRenderer/configSchema.d.ts +8 -0
  32. package/esm/LDRenderer/configSchema.js +10 -0
  33. package/esm/LDRenderer/index.d.ts +2 -0
  34. package/esm/LDRenderer/index.js +11 -0
  35. package/esm/LDRenderer/makeImageData.d.ts +20 -0
  36. package/esm/LDRenderer/makeImageData.js +157 -0
  37. package/esm/LDRenderer/types.d.ts +8 -0
  38. package/esm/LDRenderer/types.js +1 -0
  39. package/esm/LDTrack/configSchema.d.ts +85 -0
  40. package/esm/LDTrack/configSchema.js +7 -0
  41. package/esm/LDTrack/index.d.ts +2 -0
  42. package/esm/LDTrack/index.js +14 -0
  43. package/esm/LinearVariantDisplay/model.d.ts +126 -42
  44. package/esm/LinearVariantDisplay/model.js +46 -8
  45. package/esm/MultiLinearVariantDisplay/configSchema.d.ts +27 -1
  46. package/esm/MultiLinearVariantDisplay/model.d.ts +2635 -31
  47. package/esm/MultiLinearVariantDisplay/model.js +6 -0
  48. package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +10 -2
  49. package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +25 -0
  50. package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +26 -0
  51. package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +2636 -32
  52. package/esm/MultiLinearVariantMatrixDisplay/model.js +6 -0
  53. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +2 -2
  54. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +11 -9
  55. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +8 -0
  56. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +14 -2
  57. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +8 -11
  58. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +2 -2
  59. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +4 -3
  60. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +4 -0
  61. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +23 -2
  62. package/esm/MultiLinearVariantRenderer/makeImageData.js +12 -12
  63. package/esm/PlinkLDAdapter/PlinkLDAdapter.d.ts +25 -0
  64. package/esm/PlinkLDAdapter/PlinkLDAdapter.js +147 -0
  65. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.d.ts +24 -0
  66. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.js +156 -0
  67. package/esm/PlinkLDAdapter/configSchema.d.ts +10 -0
  68. package/esm/PlinkLDAdapter/configSchema.js +25 -0
  69. package/esm/PlinkLDAdapter/configSchemaTabix.d.ts +24 -0
  70. package/esm/PlinkLDAdapter/configSchemaTabix.js +46 -0
  71. package/esm/PlinkLDAdapter/index.d.ts +2 -0
  72. package/esm/PlinkLDAdapter/index.js +25 -0
  73. package/esm/PlinkLDAdapter/types.d.ts +29 -0
  74. package/esm/PlinkLDAdapter/types.js +1 -0
  75. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +1 -1
  76. package/esm/VariantRPC/MultiVariantGetFeatureDetails.d.ts +14 -0
  77. package/esm/VariantRPC/MultiVariantGetFeatureDetails.js +15 -0
  78. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +4 -1
  79. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +3 -3
  80. package/esm/VariantRPC/executeClusterGenotypeMatrix.js +6 -3
  81. package/esm/VariantRPC/getGenotypeMatrix.d.ts +2 -3
  82. package/esm/VariantRPC/getGenotypeMatrix.js +4 -5
  83. package/esm/VariantRPC/getLDMatrix.d.ts +47 -0
  84. package/esm/VariantRPC/getLDMatrix.js +387 -0
  85. package/esm/VariantRPC/getLDMatrixFromPlink.d.ts +16 -0
  86. package/esm/VariantRPC/getLDMatrixFromPlink.js +105 -0
  87. package/esm/VariantRPC/getPhasedGenotypeMatrix.d.ts +2 -3
  88. package/esm/VariantRPC/getPhasedGenotypeMatrix.js +4 -5
  89. package/esm/VariantRPC/types.d.ts +3 -0
  90. package/esm/VcfAdapter/VcfAdapter.d.ts +1 -1
  91. package/esm/VcfAdapter/VcfAdapter.js +1 -2
  92. package/esm/VcfExtensionPoints/index.js +29 -3
  93. package/esm/VcfFeature/index.d.ts +2 -1
  94. package/esm/VcfFeature/index.js +4 -2
  95. package/esm/index.d.ts +1 -0
  96. package/esm/index.js +23 -0
  97. package/esm/shared/MultiVariantBaseModel.d.ts +2626 -26
  98. package/esm/shared/MultiVariantBaseModel.js +88 -39
  99. package/esm/shared/SharedVariantConfigSchema.d.ts +27 -1
  100. package/esm/shared/SharedVariantConfigSchema.js +28 -1
  101. package/esm/shared/VariantFeatureCache.d.ts +27 -0
  102. package/esm/shared/VariantFeatureCache.js +48 -0
  103. package/esm/shared/VariantRendererType.d.ts +23 -0
  104. package/esm/shared/VariantRendererType.js +15 -0
  105. package/esm/shared/applyColorPalette.d.ts +9 -0
  106. package/esm/shared/applyColorPalette.js +23 -0
  107. package/esm/shared/colorByAutorun.d.ts +10 -0
  108. package/esm/shared/colorByAutorun.js +39 -0
  109. package/esm/shared/components/AddFiltersDialog.d.ts +3 -3
  110. package/esm/shared/components/AddFiltersDialog.js +29 -22
  111. package/esm/shared/components/LDFilterDialog.d.ts +13 -0
  112. package/esm/shared/components/LDFilterDialog.js +102 -0
  113. package/esm/shared/components/MAFFilterDialog.js +23 -16
  114. package/esm/shared/components/RecombinationTrack.d.ts +21 -0
  115. package/esm/shared/components/RecombinationTrack.js +54 -0
  116. package/esm/shared/components/RecombinationYScaleBar.d.ts +7 -0
  117. package/esm/shared/components/RecombinationYScaleBar.js +34 -0
  118. package/esm/shared/components/SetColorDialogRowPalettizer.d.ts +3 -8
  119. package/esm/shared/components/SetColorDialogRowPalettizer.js +2 -14
  120. package/esm/shared/drawAlleleCount.js +9 -0
  121. package/esm/shared/drawPhased.d.ts +1 -1
  122. package/esm/shared/drawPhased.js +31 -2
  123. package/esm/shared/mafFilterUtils.d.ts +5 -0
  124. package/esm/shared/mafFilterUtils.js +17 -0
  125. package/esm/shared/minorAlleleFrequencyUtils.d.ts +4 -2
  126. package/esm/shared/minorAlleleFrequencyUtils.js +261 -19
  127. package/esm/shared/setupMultiVariantAutoruns.js +2 -0
  128. package/package.json +11 -10
@@ -93,14 +93,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
93
93
  type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
94
94
  layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
95
95
  configuration: AnyConfigurationSchemaType;
96
- minorAlleleFrequencyFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
97
- showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
98
- showTree: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
99
- renderingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
96
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
97
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
98
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
99
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
100
100
  rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
101
101
  lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
102
102
  jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
103
- referenceDrawingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
103
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
104
104
  clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
105
105
  treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
106
106
  lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -1110,6 +1110,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1110
1110
  simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
1111
1111
  featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
1112
1112
  sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
1113
+ colorByApplied: boolean;
1113
1114
  featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
1114
1115
  hasPhased: boolean;
1115
1116
  sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
@@ -1120,6 +1121,8 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1120
1121
  hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
1121
1122
  treeCanvas: HTMLCanvasElement | undefined;
1122
1123
  mouseoverCanvas: HTMLCanvasElement | undefined;
1124
+ } & {
1125
+ readonly renderingMode: string;
1123
1126
  } & {
1124
1127
  setJexlFilters(f?: string[]): void;
1125
1128
  setRowHeight(arg: number | "auto"): void;
@@ -1132,6 +1135,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1132
1135
  setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
1133
1136
  setTreeAreaWidth(width: number): void;
1134
1137
  setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
1138
+ setColorByApplied(value: boolean): void;
1135
1139
  setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
1136
1140
  clearLayout(): void;
1137
1141
  setClusterTree(tree?: string): void;
@@ -1148,7 +1152,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1148
1152
  setReferenceDrawingMode(arg: string): void;
1149
1153
  } & {
1150
1154
  readonly autoHeight: boolean;
1151
- readonly activeFilters: any;
1155
+ readonly minorAlleleFrequencyFilter: any;
1156
+ readonly showSidebarLabels: any;
1157
+ readonly showTree: any;
1158
+ readonly referenceDrawingMode: string;
1159
+ activeFilters(): any;
1152
1160
  readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
1153
1161
  readonly sources: import("../shared/types.ts").Source[] | undefined;
1154
1162
  readonly root: any;
@@ -1171,24 +1179,24 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1171
1179
  subMenu: ({
1172
1180
  label: string;
1173
1181
  type: string;
1174
- checked: boolean;
1175
- disabled: boolean;
1182
+ checked: any;
1176
1183
  onClick: () => void;
1184
+ disabled?: undefined;
1177
1185
  helpText?: undefined;
1178
1186
  } | {
1179
1187
  label: string;
1180
- helpText: string;
1181
1188
  type: string;
1182
- checked: boolean;
1189
+ checked: any;
1190
+ disabled: boolean;
1183
1191
  onClick: () => void;
1184
- disabled?: undefined;
1192
+ helpText?: undefined;
1185
1193
  } | {
1186
1194
  label: string;
1195
+ helpText: string;
1187
1196
  type: string;
1188
- checked: boolean | undefined;
1197
+ checked: boolean;
1189
1198
  onClick: () => void;
1190
1199
  disabled?: undefined;
1191
- helpText?: undefined;
1192
1200
  })[];
1193
1201
  onClick?: undefined;
1194
1202
  } | {
@@ -1238,10 +1246,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1238
1246
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1239
1247
  muiName: string;
1240
1248
  };
1241
- subMenu: {
1242
- label: string;
1243
- onClick: () => void;
1244
- }[];
1249
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
1245
1250
  type?: undefined;
1246
1251
  onClick?: undefined;
1247
1252
  } | {
@@ -1254,13 +1259,13 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1254
1259
  subMenu?: undefined;
1255
1260
  })[];
1256
1261
  } & {
1257
- readonly canDisplayLabels: boolean;
1262
+ readonly canDisplayLabels: any;
1258
1263
  readonly totalHeight: number;
1259
1264
  readonly featuresReady: boolean;
1260
1265
  getPortableSettings(): {
1261
- minorAlleleFrequencyFilter: number;
1262
- showSidebarLabelsSetting: boolean;
1263
- showTree: boolean;
1266
+ minorAlleleFrequencyFilter: any;
1267
+ showSidebarLabelsSetting: boolean | undefined;
1268
+ showTree: any;
1264
1269
  renderingMode: string;
1265
1270
  lengthCutoffFilter: number;
1266
1271
  jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
@@ -1272,12 +1277,2611 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1272
1277
  };
1273
1278
  } & {
1274
1279
  renderProps(): any;
1275
- legendItems(): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1276
- } & {
1277
- afterAttach(): void;
1278
- } & {
1279
- readonly blockType: string;
1280
- readonly prefersOffset: boolean;
1280
+ renderingProps(): {
1281
+ displayModel: {
1282
+ id: string;
1283
+ type: never;
1284
+ rpcDriverName: string | undefined;
1285
+ heightPreConfig: number | undefined;
1286
+ userBpPerPxLimit: number | undefined;
1287
+ userByteSizeLimit: number | undefined;
1288
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
1289
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1290
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1291
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1292
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1293
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1294
+ }, {
1295
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1296
+ filled: boolean;
1297
+ reactElement: React.ReactElement | undefined;
1298
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1299
+ layout: any;
1300
+ blockStatusMessage: string;
1301
+ error: unknown;
1302
+ message: string | undefined;
1303
+ maxHeightReached: boolean;
1304
+ ReactComponent: ({ model, }: {
1305
+ model: {
1306
+ error?: unknown;
1307
+ reload: () => void;
1308
+ message?: React.ReactNode;
1309
+ statusMessage?: string;
1310
+ reactElement?: React.ReactElement;
1311
+ isRenderingPending?: boolean;
1312
+ };
1313
+ }) => import("react/jsx-runtime").JSX.Element;
1314
+ renderProps: any;
1315
+ renderArgs: Record<string, unknown> | undefined;
1316
+ isRenderingPending: boolean;
1317
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1318
+ } & {
1319
+ doReload(): void;
1320
+ setStatusMessage(message: string): void;
1321
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1322
+ setMessage(messageText: string): void;
1323
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1324
+ setError(error: unknown): void;
1325
+ reload(): void;
1326
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1327
+ beforeDestroy(): void;
1328
+ } & {
1329
+ readonly statusMessage: any;
1330
+ } & {
1331
+ afterAttach(): void;
1332
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1333
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1334
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1335
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1336
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1337
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1338
+ }, {
1339
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1340
+ filled: boolean;
1341
+ reactElement: React.ReactElement | undefined;
1342
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1343
+ layout: any;
1344
+ blockStatusMessage: string;
1345
+ error: unknown;
1346
+ message: string | undefined;
1347
+ maxHeightReached: boolean;
1348
+ ReactComponent: ({ model, }: {
1349
+ model: {
1350
+ error?: unknown;
1351
+ reload: () => void;
1352
+ message?: React.ReactNode;
1353
+ statusMessage?: string;
1354
+ reactElement?: React.ReactElement;
1355
+ isRenderingPending?: boolean;
1356
+ };
1357
+ }) => import("react/jsx-runtime").JSX.Element;
1358
+ renderProps: any;
1359
+ renderArgs: Record<string, unknown> | undefined;
1360
+ isRenderingPending: boolean;
1361
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1362
+ } & {
1363
+ doReload(): void;
1364
+ setStatusMessage(message: string): void;
1365
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1366
+ setMessage(messageText: string): void;
1367
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1368
+ setError(error: unknown): void;
1369
+ reload(): void;
1370
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1371
+ beforeDestroy(): void;
1372
+ } & {
1373
+ readonly statusMessage: any;
1374
+ } & {
1375
+ afterAttach(): void;
1376
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1377
+ configuration: {
1378
+ [x: string]: any;
1379
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1380
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1381
+ [x: string]: any;
1382
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1383
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1384
+ [x: string]: any;
1385
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1386
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1387
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1388
+ maxFeatureScreenDensity: {
1389
+ type: string;
1390
+ description: string;
1391
+ defaultValue: number;
1392
+ };
1393
+ fetchSizeLimit: {
1394
+ type: string;
1395
+ defaultValue: number;
1396
+ description: string;
1397
+ };
1398
+ height: {
1399
+ type: string;
1400
+ defaultValue: number;
1401
+ description: string;
1402
+ };
1403
+ mouseover: {
1404
+ type: string;
1405
+ description: string;
1406
+ defaultValue: string;
1407
+ contextVariable: string[];
1408
+ };
1409
+ jexlFilters: {
1410
+ type: string;
1411
+ description: string;
1412
+ defaultValue: never[];
1413
+ };
1414
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
1415
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1416
+ [x: string]: any;
1417
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1418
+ };
1419
+ showLegend: boolean | undefined;
1420
+ showTooltips: boolean | undefined;
1421
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
1422
+ minorAlleleFrequencyFilterSetting: number | undefined;
1423
+ showSidebarLabelsSetting: boolean | undefined;
1424
+ showTreeSetting: boolean | undefined;
1425
+ renderingModeSetting: string | undefined;
1426
+ rowHeightMode: number | "auto";
1427
+ lengthCutoffFilter: number;
1428
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
1429
+ referenceDrawingModeSetting: string | undefined;
1430
+ clusterTree: string | undefined;
1431
+ treeAreaWidth: number;
1432
+ lineZoneHeight: number;
1433
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1434
+ rendererTypeName: string;
1435
+ error: unknown;
1436
+ statusMessage: string | undefined;
1437
+ } & {
1438
+ readonly RenderingComponent: React.FC<{
1439
+ model: {
1440
+ id: string;
1441
+ type: string;
1442
+ rpcDriverName: string | undefined;
1443
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1444
+ rendererTypeName: string;
1445
+ error: unknown;
1446
+ statusMessage: string | undefined;
1447
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1448
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1449
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1450
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1451
+ }, {
1452
+ rendererTypeName: string;
1453
+ error: unknown;
1454
+ statusMessage: string | undefined;
1455
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1456
+ onHorizontalScroll?: () => void;
1457
+ blockState?: Record<string, any>;
1458
+ }>;
1459
+ readonly DisplayBlurb: React.FC<{
1460
+ model: {
1461
+ id: string;
1462
+ type: string;
1463
+ rpcDriverName: string | undefined;
1464
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1465
+ rendererTypeName: string;
1466
+ error: unknown;
1467
+ statusMessage: string | undefined;
1468
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1469
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1470
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1471
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1472
+ }, {
1473
+ rendererTypeName: string;
1474
+ error: unknown;
1475
+ statusMessage: string | undefined;
1476
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1477
+ }> | null;
1478
+ readonly adapterConfig: any;
1479
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1480
+ readonly isMinimized: boolean;
1481
+ readonly parentDisplay: any;
1482
+ readonly effectiveRpcDriverName: any;
1483
+ } & {
1484
+ renderProps(): any;
1485
+ renderingProps(): {
1486
+ displayModel: {
1487
+ id: string;
1488
+ type: string;
1489
+ rpcDriverName: string | undefined;
1490
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1491
+ rendererTypeName: string;
1492
+ error: unknown;
1493
+ statusMessage: string | undefined;
1494
+ } & {
1495
+ readonly RenderingComponent: React.FC<{
1496
+ model: {
1497
+ id: string;
1498
+ type: string;
1499
+ rpcDriverName: string | undefined;
1500
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1501
+ rendererTypeName: string;
1502
+ error: unknown;
1503
+ statusMessage: string | undefined;
1504
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1505
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1506
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1507
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1508
+ }, {
1509
+ rendererTypeName: string;
1510
+ error: unknown;
1511
+ statusMessage: string | undefined;
1512
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1513
+ onHorizontalScroll?: () => void;
1514
+ blockState?: Record<string, any>;
1515
+ }>;
1516
+ readonly DisplayBlurb: React.FC<{
1517
+ model: {
1518
+ id: string;
1519
+ type: string;
1520
+ rpcDriverName: string | undefined;
1521
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1522
+ rendererTypeName: string;
1523
+ error: unknown;
1524
+ statusMessage: string | undefined;
1525
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1526
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1527
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1528
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1529
+ }, {
1530
+ rendererTypeName: string;
1531
+ error: unknown;
1532
+ statusMessage: string | undefined;
1533
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1534
+ }> | null;
1535
+ readonly adapterConfig: any;
1536
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1537
+ readonly isMinimized: boolean;
1538
+ readonly parentDisplay: any;
1539
+ readonly effectiveRpcDriverName: any;
1540
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1541
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1542
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1543
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1544
+ }, {
1545
+ rendererTypeName: string;
1546
+ error: unknown;
1547
+ statusMessage: string | undefined;
1548
+ } & {
1549
+ readonly RenderingComponent: React.FC<{
1550
+ model: {
1551
+ id: string;
1552
+ type: string;
1553
+ rpcDriverName: string | undefined;
1554
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1555
+ rendererTypeName: string;
1556
+ error: unknown;
1557
+ statusMessage: string | undefined;
1558
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1559
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1560
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1561
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1562
+ }, {
1563
+ rendererTypeName: string;
1564
+ error: unknown;
1565
+ statusMessage: string | undefined;
1566
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1567
+ onHorizontalScroll?: () => void;
1568
+ blockState?: Record<string, any>;
1569
+ }>;
1570
+ readonly DisplayBlurb: React.FC<{
1571
+ model: {
1572
+ id: string;
1573
+ type: string;
1574
+ rpcDriverName: string | undefined;
1575
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1576
+ rendererTypeName: string;
1577
+ error: unknown;
1578
+ statusMessage: string | undefined;
1579
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1580
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1581
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1582
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1583
+ }, {
1584
+ rendererTypeName: string;
1585
+ error: unknown;
1586
+ statusMessage: string | undefined;
1587
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1588
+ }> | null;
1589
+ readonly adapterConfig: any;
1590
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1591
+ readonly isMinimized: boolean;
1592
+ readonly parentDisplay: any;
1593
+ readonly effectiveRpcDriverName: any;
1594
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1595
+ };
1596
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1597
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1598
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1599
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1600
+ regionCannotBeRendered(): null;
1601
+ } & {
1602
+ setStatusMessage(arg?: string): void;
1603
+ setError(error?: unknown): void;
1604
+ setRpcDriverName(rpcDriverName: string): void;
1605
+ reload(): void;
1606
+ } & {
1607
+ scrollTop: number;
1608
+ } & {
1609
+ readonly height: number;
1610
+ } & {
1611
+ setScrollTop(scrollTop: number): void;
1612
+ setHeight(displayHeight: number): number;
1613
+ resizeHeight(distance: number): number;
1614
+ } & {
1615
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1616
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1617
+ currStatsBpPerPx: number;
1618
+ } & {
1619
+ readonly currentBytesRequested: number;
1620
+ readonly currentFeatureScreenDensity: number;
1621
+ readonly maxFeatureScreenDensity: any;
1622
+ readonly featureDensityStatsReady: boolean;
1623
+ readonly maxAllowableBytes: number;
1624
+ } & {
1625
+ afterAttach(): void;
1626
+ } & {
1627
+ setCurrStatsBpPerPx(n: number): void;
1628
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1629
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1630
+ setFeatureDensityStatsP(arg: any): void;
1631
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1632
+ clearFeatureDensityStats(): void;
1633
+ } & {
1634
+ readonly regionTooLarge: boolean;
1635
+ readonly regionTooLargeReason: string;
1636
+ } & {
1637
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1638
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1639
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1640
+ } & {
1641
+ mouseoverExtraInformation: string | undefined;
1642
+ featureIdUnderMouse: undefined | string;
1643
+ subfeatureIdUnderMouse: undefined | string;
1644
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
1645
+ } & {
1646
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1647
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1648
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1649
+ } & {
1650
+ readonly renderDelay: number;
1651
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1652
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
1653
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1654
+ readonly selectedFeatureId: string | undefined;
1655
+ readonly featureWidgetType: {
1656
+ type: string;
1657
+ id: string;
1658
+ };
1659
+ } & {
1660
+ readonly showTooltipsEnabled: boolean;
1661
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
1662
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
1663
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
1664
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
1665
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1666
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1667
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1668
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1669
+ } & {
1670
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1671
+ deleteBlock(key: string): void;
1672
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
1673
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
1674
+ clearFeatureSelection(): void;
1675
+ setFeatureIdUnderMouse(feature?: string): void;
1676
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1677
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
1678
+ setMouseoverExtraInformation(extra?: string): void;
1679
+ setShowLegend(s: boolean): void;
1680
+ setShowTooltips(arg: boolean): void;
1681
+ } & {
1682
+ reload(): Promise<void>;
1683
+ } & {
1684
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1685
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1686
+ } & {
1687
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1688
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1689
+ renderingProps(): {
1690
+ displayModel: {
1691
+ id: string;
1692
+ type: string;
1693
+ rpcDriverName: string | undefined;
1694
+ heightPreConfig: number | undefined;
1695
+ userBpPerPxLimit: number | undefined;
1696
+ userByteSizeLimit: number | undefined;
1697
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
1698
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1699
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1700
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1701
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1702
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1703
+ }, {
1704
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1705
+ filled: boolean;
1706
+ reactElement: React.ReactElement | undefined;
1707
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1708
+ layout: any;
1709
+ blockStatusMessage: string;
1710
+ error: unknown;
1711
+ message: string | undefined;
1712
+ maxHeightReached: boolean;
1713
+ ReactComponent: ({ model, }: {
1714
+ model: {
1715
+ error?: unknown;
1716
+ reload: () => void;
1717
+ message?: React.ReactNode;
1718
+ statusMessage?: string;
1719
+ reactElement?: React.ReactElement;
1720
+ isRenderingPending?: boolean;
1721
+ };
1722
+ }) => import("react/jsx-runtime").JSX.Element;
1723
+ renderProps: any;
1724
+ renderArgs: Record<string, unknown> | undefined;
1725
+ isRenderingPending: boolean;
1726
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1727
+ } & {
1728
+ doReload(): void;
1729
+ setStatusMessage(message: string): void;
1730
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1731
+ setMessage(messageText: string): void;
1732
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1733
+ setError(error: unknown): void;
1734
+ reload(): void;
1735
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1736
+ beforeDestroy(): void;
1737
+ } & {
1738
+ readonly statusMessage: any;
1739
+ } & {
1740
+ afterAttach(): void;
1741
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1742
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1743
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1744
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1745
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1746
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1747
+ }, {
1748
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
1749
+ filled: boolean;
1750
+ reactElement: React.ReactElement | undefined;
1751
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
1752
+ layout: any;
1753
+ blockStatusMessage: string;
1754
+ error: unknown;
1755
+ message: string | undefined;
1756
+ maxHeightReached: boolean;
1757
+ ReactComponent: ({ model, }: {
1758
+ model: {
1759
+ error?: unknown;
1760
+ reload: () => void;
1761
+ message?: React.ReactNode;
1762
+ statusMessage?: string;
1763
+ reactElement?: React.ReactElement;
1764
+ isRenderingPending?: boolean;
1765
+ };
1766
+ }) => import("react/jsx-runtime").JSX.Element;
1767
+ renderProps: any;
1768
+ renderArgs: Record<string, unknown> | undefined;
1769
+ isRenderingPending: boolean;
1770
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1771
+ } & {
1772
+ doReload(): void;
1773
+ setStatusMessage(message: string): void;
1774
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
1775
+ setMessage(messageText: string): void;
1776
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1777
+ setError(error: unknown): void;
1778
+ reload(): void;
1779
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1780
+ beforeDestroy(): void;
1781
+ } & {
1782
+ readonly statusMessage: any;
1783
+ } & {
1784
+ afterAttach(): void;
1785
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1786
+ configuration: {
1787
+ [x: string]: any;
1788
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1789
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1790
+ [x: string]: any;
1791
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1792
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1793
+ [x: string]: any;
1794
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1795
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1796
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1797
+ maxFeatureScreenDensity: {
1798
+ type: string;
1799
+ description: string;
1800
+ defaultValue: number;
1801
+ };
1802
+ fetchSizeLimit: {
1803
+ type: string;
1804
+ defaultValue: number;
1805
+ description: string;
1806
+ };
1807
+ height: {
1808
+ type: string;
1809
+ defaultValue: number;
1810
+ description: string;
1811
+ };
1812
+ mouseover: {
1813
+ type: string;
1814
+ description: string;
1815
+ defaultValue: string;
1816
+ contextVariable: string[];
1817
+ };
1818
+ jexlFilters: {
1819
+ type: string;
1820
+ description: string;
1821
+ defaultValue: never[];
1822
+ };
1823
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
1824
+ showLegend: boolean | undefined;
1825
+ showTooltips: boolean | undefined;
1826
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1827
+ rendererTypeName: string;
1828
+ error: unknown;
1829
+ statusMessage: string | undefined;
1830
+ } & {
1831
+ readonly RenderingComponent: React.FC<{
1832
+ model: {
1833
+ id: string;
1834
+ type: string;
1835
+ rpcDriverName: string | undefined;
1836
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1837
+ rendererTypeName: string;
1838
+ error: unknown;
1839
+ statusMessage: string | undefined;
1840
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1841
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1842
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1843
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1844
+ }, {
1845
+ rendererTypeName: string;
1846
+ error: unknown;
1847
+ statusMessage: string | undefined;
1848
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1849
+ onHorizontalScroll?: () => void;
1850
+ blockState?: Record<string, any>;
1851
+ }>;
1852
+ readonly DisplayBlurb: React.FC<{
1853
+ model: {
1854
+ id: string;
1855
+ type: string;
1856
+ rpcDriverName: string | undefined;
1857
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1858
+ rendererTypeName: string;
1859
+ error: unknown;
1860
+ statusMessage: string | undefined;
1861
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1862
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1863
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1864
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1865
+ }, {
1866
+ rendererTypeName: string;
1867
+ error: unknown;
1868
+ statusMessage: string | undefined;
1869
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1870
+ }> | null;
1871
+ readonly adapterConfig: any;
1872
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1873
+ readonly isMinimized: boolean;
1874
+ readonly parentDisplay: any;
1875
+ readonly effectiveRpcDriverName: any;
1876
+ } & {
1877
+ renderProps(): any;
1878
+ renderingProps(): {
1879
+ displayModel: {
1880
+ id: string;
1881
+ type: string;
1882
+ rpcDriverName: string | undefined;
1883
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1884
+ rendererTypeName: string;
1885
+ error: unknown;
1886
+ statusMessage: string | undefined;
1887
+ } & {
1888
+ readonly RenderingComponent: React.FC<{
1889
+ model: {
1890
+ id: string;
1891
+ type: string;
1892
+ rpcDriverName: string | undefined;
1893
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1894
+ rendererTypeName: string;
1895
+ error: unknown;
1896
+ statusMessage: string | undefined;
1897
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1898
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1899
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1900
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1901
+ }, {
1902
+ rendererTypeName: string;
1903
+ error: unknown;
1904
+ statusMessage: string | undefined;
1905
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1906
+ onHorizontalScroll?: () => void;
1907
+ blockState?: Record<string, any>;
1908
+ }>;
1909
+ readonly DisplayBlurb: React.FC<{
1910
+ model: {
1911
+ id: string;
1912
+ type: string;
1913
+ rpcDriverName: string | undefined;
1914
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1915
+ rendererTypeName: string;
1916
+ error: unknown;
1917
+ statusMessage: string | undefined;
1918
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1919
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1920
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1921
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1922
+ }, {
1923
+ rendererTypeName: string;
1924
+ error: unknown;
1925
+ statusMessage: string | undefined;
1926
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1927
+ }> | null;
1928
+ readonly adapterConfig: any;
1929
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1930
+ readonly isMinimized: boolean;
1931
+ readonly parentDisplay: any;
1932
+ readonly effectiveRpcDriverName: any;
1933
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1934
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1935
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1936
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1937
+ }, {
1938
+ rendererTypeName: string;
1939
+ error: unknown;
1940
+ statusMessage: string | undefined;
1941
+ } & {
1942
+ readonly RenderingComponent: React.FC<{
1943
+ model: {
1944
+ id: string;
1945
+ type: string;
1946
+ rpcDriverName: string | undefined;
1947
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1948
+ rendererTypeName: string;
1949
+ error: unknown;
1950
+ statusMessage: string | undefined;
1951
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1952
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1953
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1954
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1955
+ }, {
1956
+ rendererTypeName: string;
1957
+ error: unknown;
1958
+ statusMessage: string | undefined;
1959
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1960
+ onHorizontalScroll?: () => void;
1961
+ blockState?: Record<string, any>;
1962
+ }>;
1963
+ readonly DisplayBlurb: React.FC<{
1964
+ model: {
1965
+ id: string;
1966
+ type: string;
1967
+ rpcDriverName: string | undefined;
1968
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1969
+ rendererTypeName: string;
1970
+ error: unknown;
1971
+ statusMessage: string | undefined;
1972
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1973
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1974
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1975
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1976
+ }, {
1977
+ rendererTypeName: string;
1978
+ error: unknown;
1979
+ statusMessage: string | undefined;
1980
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1981
+ }> | null;
1982
+ readonly adapterConfig: any;
1983
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1984
+ readonly isMinimized: boolean;
1985
+ readonly parentDisplay: any;
1986
+ readonly effectiveRpcDriverName: any;
1987
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1988
+ };
1989
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1990
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1991
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1992
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1993
+ regionCannotBeRendered(): null;
1994
+ } & {
1995
+ setStatusMessage(arg?: string): void;
1996
+ setError(error?: unknown): void;
1997
+ setRpcDriverName(rpcDriverName: string): void;
1998
+ reload(): void;
1999
+ } & {
2000
+ scrollTop: number;
2001
+ } & {
2002
+ readonly height: number;
2003
+ } & {
2004
+ setScrollTop(scrollTop: number): void;
2005
+ setHeight(displayHeight: number): number;
2006
+ resizeHeight(distance: number): number;
2007
+ } & {
2008
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2009
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2010
+ currStatsBpPerPx: number;
2011
+ } & {
2012
+ readonly currentBytesRequested: number;
2013
+ readonly currentFeatureScreenDensity: number;
2014
+ readonly maxFeatureScreenDensity: any;
2015
+ readonly featureDensityStatsReady: boolean;
2016
+ readonly maxAllowableBytes: number;
2017
+ } & {
2018
+ afterAttach(): void;
2019
+ } & {
2020
+ setCurrStatsBpPerPx(n: number): void;
2021
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2022
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2023
+ setFeatureDensityStatsP(arg: any): void;
2024
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2025
+ clearFeatureDensityStats(): void;
2026
+ } & {
2027
+ readonly regionTooLarge: boolean;
2028
+ readonly regionTooLargeReason: string;
2029
+ } & {
2030
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2031
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2032
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2033
+ } & {
2034
+ mouseoverExtraInformation: string | undefined;
2035
+ featureIdUnderMouse: undefined | string;
2036
+ subfeatureIdUnderMouse: undefined | string;
2037
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2038
+ } & {
2039
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2040
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2041
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2042
+ } & {
2043
+ readonly renderDelay: number;
2044
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2045
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2046
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2047
+ readonly selectedFeatureId: string | undefined;
2048
+ readonly featureWidgetType: {
2049
+ type: string;
2050
+ id: string;
2051
+ };
2052
+ } & {
2053
+ readonly showTooltipsEnabled: boolean;
2054
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2055
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2056
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2057
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2058
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2059
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2060
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2061
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2062
+ } & {
2063
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2064
+ deleteBlock(key: string): void;
2065
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2066
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2067
+ clearFeatureSelection(): void;
2068
+ setFeatureIdUnderMouse(feature?: string): void;
2069
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2070
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2071
+ setMouseoverExtraInformation(extra?: string): void;
2072
+ setShowLegend(s: boolean): void;
2073
+ setShowTooltips(arg: boolean): void;
2074
+ } & {
2075
+ reload(): Promise<void>;
2076
+ } & {
2077
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2078
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2079
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2080
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2081
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2082
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2083
+ } & {
2084
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2085
+ } & {
2086
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2087
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2088
+ } & {
2089
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2090
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2091
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2092
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2093
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2094
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2095
+ }, {
2096
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2097
+ filled: boolean;
2098
+ reactElement: React.ReactElement | undefined;
2099
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2100
+ layout: any;
2101
+ blockStatusMessage: string;
2102
+ error: unknown;
2103
+ message: string | undefined;
2104
+ maxHeightReached: boolean;
2105
+ ReactComponent: ({ model, }: {
2106
+ model: {
2107
+ error?: unknown;
2108
+ reload: () => void;
2109
+ message?: React.ReactNode;
2110
+ statusMessage?: string;
2111
+ reactElement?: React.ReactElement;
2112
+ isRenderingPending?: boolean;
2113
+ };
2114
+ }) => import("react/jsx-runtime").JSX.Element;
2115
+ renderProps: any;
2116
+ renderArgs: Record<string, unknown> | undefined;
2117
+ isRenderingPending: boolean;
2118
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2119
+ } & {
2120
+ doReload(): void;
2121
+ setStatusMessage(message: string): void;
2122
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
2123
+ setMessage(messageText: string): void;
2124
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2125
+ setError(error: unknown): void;
2126
+ reload(): void;
2127
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2128
+ beforeDestroy(): void;
2129
+ } & {
2130
+ readonly statusMessage: any;
2131
+ } & {
2132
+ afterAttach(): void;
2133
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2134
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2135
+ maxFeatureScreenDensity: {
2136
+ type: string;
2137
+ description: string;
2138
+ defaultValue: number;
2139
+ };
2140
+ fetchSizeLimit: {
2141
+ type: string;
2142
+ defaultValue: number;
2143
+ description: string;
2144
+ };
2145
+ height: {
2146
+ type: string;
2147
+ defaultValue: number;
2148
+ description: string;
2149
+ };
2150
+ mouseover: {
2151
+ type: string;
2152
+ description: string;
2153
+ defaultValue: string;
2154
+ contextVariable: string[];
2155
+ };
2156
+ jexlFilters: {
2157
+ type: string;
2158
+ description: string;
2159
+ defaultValue: never[];
2160
+ };
2161
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2162
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2163
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2164
+ }, {
2165
+ rendererTypeName: string;
2166
+ error: unknown;
2167
+ statusMessage: string | undefined;
2168
+ } & {
2169
+ readonly RenderingComponent: React.FC<{
2170
+ model: {
2171
+ id: string;
2172
+ type: string;
2173
+ rpcDriverName: string | undefined;
2174
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2175
+ rendererTypeName: string;
2176
+ error: unknown;
2177
+ statusMessage: string | undefined;
2178
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2179
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2180
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2181
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2182
+ }, {
2183
+ rendererTypeName: string;
2184
+ error: unknown;
2185
+ statusMessage: string | undefined;
2186
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2187
+ onHorizontalScroll?: () => void;
2188
+ blockState?: Record<string, any>;
2189
+ }>;
2190
+ readonly DisplayBlurb: React.FC<{
2191
+ model: {
2192
+ id: string;
2193
+ type: string;
2194
+ rpcDriverName: string | undefined;
2195
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2196
+ rendererTypeName: string;
2197
+ error: unknown;
2198
+ statusMessage: string | undefined;
2199
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2200
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2201
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2202
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2203
+ }, {
2204
+ rendererTypeName: string;
2205
+ error: unknown;
2206
+ statusMessage: string | undefined;
2207
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2208
+ }> | null;
2209
+ readonly adapterConfig: any;
2210
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2211
+ readonly isMinimized: boolean;
2212
+ readonly parentDisplay: any;
2213
+ readonly effectiveRpcDriverName: any;
2214
+ } & {
2215
+ renderProps(): any;
2216
+ renderingProps(): {
2217
+ displayModel: {
2218
+ id: string;
2219
+ type: string;
2220
+ rpcDriverName: string | undefined;
2221
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2222
+ rendererTypeName: string;
2223
+ error: unknown;
2224
+ statusMessage: string | undefined;
2225
+ } & {
2226
+ readonly RenderingComponent: React.FC<{
2227
+ model: {
2228
+ id: string;
2229
+ type: string;
2230
+ rpcDriverName: string | undefined;
2231
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2232
+ rendererTypeName: string;
2233
+ error: unknown;
2234
+ statusMessage: string | undefined;
2235
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2236
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2237
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2238
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2239
+ }, {
2240
+ rendererTypeName: string;
2241
+ error: unknown;
2242
+ statusMessage: string | undefined;
2243
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2244
+ onHorizontalScroll?: () => void;
2245
+ blockState?: Record<string, any>;
2246
+ }>;
2247
+ readonly DisplayBlurb: React.FC<{
2248
+ model: {
2249
+ id: string;
2250
+ type: string;
2251
+ rpcDriverName: string | undefined;
2252
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2253
+ rendererTypeName: string;
2254
+ error: unknown;
2255
+ statusMessage: string | undefined;
2256
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2257
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2258
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2259
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2260
+ }, {
2261
+ rendererTypeName: string;
2262
+ error: unknown;
2263
+ statusMessage: string | undefined;
2264
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2265
+ }> | null;
2266
+ readonly adapterConfig: any;
2267
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2268
+ readonly isMinimized: boolean;
2269
+ readonly parentDisplay: any;
2270
+ readonly effectiveRpcDriverName: any;
2271
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2272
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2273
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2274
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2275
+ }, {
2276
+ rendererTypeName: string;
2277
+ error: unknown;
2278
+ statusMessage: string | undefined;
2279
+ } & {
2280
+ readonly RenderingComponent: React.FC<{
2281
+ model: {
2282
+ id: string;
2283
+ type: string;
2284
+ rpcDriverName: string | undefined;
2285
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2286
+ rendererTypeName: string;
2287
+ error: unknown;
2288
+ statusMessage: string | undefined;
2289
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2290
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2291
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2292
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2293
+ }, {
2294
+ rendererTypeName: string;
2295
+ error: unknown;
2296
+ statusMessage: string | undefined;
2297
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2298
+ onHorizontalScroll?: () => void;
2299
+ blockState?: Record<string, any>;
2300
+ }>;
2301
+ readonly DisplayBlurb: React.FC<{
2302
+ model: {
2303
+ id: string;
2304
+ type: string;
2305
+ rpcDriverName: string | undefined;
2306
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2307
+ rendererTypeName: string;
2308
+ error: unknown;
2309
+ statusMessage: string | undefined;
2310
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2311
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2312
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2313
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2314
+ }, {
2315
+ rendererTypeName: string;
2316
+ error: unknown;
2317
+ statusMessage: string | undefined;
2318
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2319
+ }> | null;
2320
+ readonly adapterConfig: any;
2321
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2322
+ readonly isMinimized: boolean;
2323
+ readonly parentDisplay: any;
2324
+ readonly effectiveRpcDriverName: any;
2325
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2326
+ };
2327
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2328
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2329
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2330
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2331
+ regionCannotBeRendered(): null;
2332
+ } & {
2333
+ setStatusMessage(arg?: string): void;
2334
+ setError(error?: unknown): void;
2335
+ setRpcDriverName(rpcDriverName: string): void;
2336
+ reload(): void;
2337
+ } & {
2338
+ scrollTop: number;
2339
+ } & {
2340
+ readonly height: number;
2341
+ } & {
2342
+ setScrollTop(scrollTop: number): void;
2343
+ setHeight(displayHeight: number): number;
2344
+ resizeHeight(distance: number): number;
2345
+ } & {
2346
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2347
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2348
+ currStatsBpPerPx: number;
2349
+ } & {
2350
+ readonly currentBytesRequested: number;
2351
+ readonly currentFeatureScreenDensity: number;
2352
+ readonly maxFeatureScreenDensity: any;
2353
+ readonly featureDensityStatsReady: boolean;
2354
+ readonly maxAllowableBytes: number;
2355
+ } & {
2356
+ afterAttach(): void;
2357
+ } & {
2358
+ setCurrStatsBpPerPx(n: number): void;
2359
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2360
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2361
+ setFeatureDensityStatsP(arg: any): void;
2362
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2363
+ clearFeatureDensityStats(): void;
2364
+ } & {
2365
+ readonly regionTooLarge: boolean;
2366
+ readonly regionTooLargeReason: string;
2367
+ } & {
2368
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2369
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2370
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2371
+ } & {
2372
+ mouseoverExtraInformation: string | undefined;
2373
+ featureIdUnderMouse: undefined | string;
2374
+ subfeatureIdUnderMouse: undefined | string;
2375
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2376
+ } & {
2377
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2378
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2379
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2380
+ } & {
2381
+ readonly renderDelay: number;
2382
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2383
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2384
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2385
+ readonly selectedFeatureId: string | undefined;
2386
+ readonly featureWidgetType: {
2387
+ type: string;
2388
+ id: string;
2389
+ };
2390
+ } & {
2391
+ readonly showTooltipsEnabled: boolean;
2392
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2393
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2394
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2395
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2396
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2397
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2398
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2399
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2400
+ } & {
2401
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2402
+ deleteBlock(key: string): void;
2403
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2404
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2405
+ clearFeatureSelection(): void;
2406
+ setFeatureIdUnderMouse(feature?: string): void;
2407
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2408
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2409
+ setMouseoverExtraInformation(extra?: string): void;
2410
+ setShowLegend(s: boolean): void;
2411
+ setShowTooltips(arg: boolean): void;
2412
+ } & {
2413
+ reload(): Promise<void>;
2414
+ } & {
2415
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2416
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2417
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2418
+ onMouseMove(_: unknown, featureId?: string): void;
2419
+ onMouseLeave(_: unknown): void;
2420
+ onContextMenu(_: unknown): void;
2421
+ };
2422
+ renderProps(): any;
2423
+ } & {
2424
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
2425
+ afterAttach(): void;
2426
+ } & {
2427
+ readonly rendererConfig: Omit<any, symbol>;
2428
+ readonly rendererTypeName: any;
2429
+ } & {
2430
+ renderProps(): any;
2431
+ } & {
2432
+ sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
2433
+ simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
2434
+ featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
2435
+ sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
2436
+ colorByApplied: boolean;
2437
+ featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
2438
+ hasPhased: boolean;
2439
+ sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
2440
+ hoveredGenotype: {
2441
+ genotype: string;
2442
+ name: string;
2443
+ } | undefined;
2444
+ hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
2445
+ treeCanvas: HTMLCanvasElement | undefined;
2446
+ mouseoverCanvas: HTMLCanvasElement | undefined;
2447
+ } & {
2448
+ readonly renderingMode: string;
2449
+ } & {
2450
+ setJexlFilters(f?: string[]): void;
2451
+ setRowHeight(arg: number | "auto"): void;
2452
+ setHoveredGenotype(arg?: {
2453
+ genotype: string;
2454
+ name: string;
2455
+ }): void;
2456
+ setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
2457
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
2458
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
2459
+ setTreeAreaWidth(width: number): void;
2460
+ setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
2461
+ setColorByApplied(value: boolean): void;
2462
+ setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
2463
+ clearLayout(): void;
2464
+ setClusterTree(tree?: string): void;
2465
+ setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
2466
+ setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
2467
+ setSources(sources: import("../shared/types.ts").Source[]): void;
2468
+ setMafFilter(arg: number): void;
2469
+ setShowSidebarLabels(arg: boolean): void;
2470
+ setShowTree(arg: boolean): void;
2471
+ setPhasedMode(arg: string): void;
2472
+ setAutoHeight(auto: boolean): void;
2473
+ setHasPhased(arg: boolean): void;
2474
+ setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
2475
+ setReferenceDrawingMode(arg: string): void;
2476
+ } & {
2477
+ readonly autoHeight: boolean;
2478
+ readonly minorAlleleFrequencyFilter: any;
2479
+ readonly showSidebarLabels: any;
2480
+ readonly showTree: any;
2481
+ readonly referenceDrawingMode: string;
2482
+ activeFilters(): any;
2483
+ readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
2484
+ readonly sources: import("../shared/types.ts").Source[] | undefined;
2485
+ readonly root: any;
2486
+ } & {
2487
+ readonly sourceMap: {
2488
+ [k: string]: import("../shared/types.ts").Source;
2489
+ } | undefined;
2490
+ readonly availableHeight: number;
2491
+ readonly nrow: number;
2492
+ readonly rowHeight: number;
2493
+ readonly hierarchy: any;
2494
+ adapterProps(): any;
2495
+ } & {
2496
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
2497
+ label: string;
2498
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2499
+ muiName: string;
2500
+ };
2501
+ type: string;
2502
+ subMenu: ({
2503
+ label: string;
2504
+ type: string;
2505
+ checked: any;
2506
+ onClick: () => void;
2507
+ disabled?: undefined;
2508
+ helpText?: undefined;
2509
+ } | {
2510
+ label: string;
2511
+ type: string;
2512
+ checked: any;
2513
+ disabled: boolean;
2514
+ onClick: () => void;
2515
+ helpText?: undefined;
2516
+ } | {
2517
+ label: string;
2518
+ helpText: string;
2519
+ type: string;
2520
+ checked: boolean;
2521
+ onClick: () => void;
2522
+ disabled?: undefined;
2523
+ })[];
2524
+ onClick?: undefined;
2525
+ } | {
2526
+ label: string;
2527
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2528
+ muiName: string;
2529
+ };
2530
+ subMenu: ({
2531
+ label: string;
2532
+ disabled: boolean;
2533
+ onClick: () => void;
2534
+ type?: undefined;
2535
+ checked?: undefined;
2536
+ } | {
2537
+ label: string;
2538
+ type: string;
2539
+ checked: boolean;
2540
+ onClick: () => void;
2541
+ disabled?: undefined;
2542
+ })[];
2543
+ type?: undefined;
2544
+ onClick?: undefined;
2545
+ } | {
2546
+ label: string;
2547
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2548
+ muiName: string;
2549
+ };
2550
+ subMenu: ({
2551
+ label: string;
2552
+ helpText: string;
2553
+ type: string;
2554
+ checked: boolean;
2555
+ onClick: () => void;
2556
+ disabled?: undefined;
2557
+ } | {
2558
+ label: string;
2559
+ helpText: string;
2560
+ disabled: boolean;
2561
+ checked: boolean;
2562
+ type: string;
2563
+ onClick: () => void;
2564
+ })[];
2565
+ type?: undefined;
2566
+ onClick?: undefined;
2567
+ } | {
2568
+ label: string;
2569
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2570
+ muiName: string;
2571
+ };
2572
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
2573
+ type?: undefined;
2574
+ onClick?: undefined;
2575
+ } | {
2576
+ label: string;
2577
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2578
+ muiName: string;
2579
+ };
2580
+ onClick: () => void;
2581
+ type?: undefined;
2582
+ subMenu?: undefined;
2583
+ })[];
2584
+ } & {
2585
+ readonly canDisplayLabels: any;
2586
+ readonly totalHeight: number;
2587
+ readonly featuresReady: boolean;
2588
+ getPortableSettings(): {
2589
+ minorAlleleFrequencyFilter: any;
2590
+ showSidebarLabelsSetting: boolean | undefined;
2591
+ showTree: any;
2592
+ renderingMode: string;
2593
+ lengthCutoffFilter: number;
2594
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
2595
+ referenceDrawingMode: string;
2596
+ clusterTree: string | undefined;
2597
+ treeAreaWidth: number;
2598
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
2599
+ height: number;
2600
+ };
2601
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2602
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2603
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2604
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2605
+ } & {
2606
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2607
+ } & {
2608
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2609
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2610
+ } & {
2611
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2612
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2613
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2614
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2615
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2616
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2617
+ }, {
2618
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2619
+ filled: boolean;
2620
+ reactElement: React.ReactElement | undefined;
2621
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2622
+ layout: any;
2623
+ blockStatusMessage: string;
2624
+ error: unknown;
2625
+ message: string | undefined;
2626
+ maxHeightReached: boolean;
2627
+ ReactComponent: ({ model, }: {
2628
+ model: {
2629
+ error?: unknown;
2630
+ reload: () => void;
2631
+ message?: React.ReactNode;
2632
+ statusMessage?: string;
2633
+ reactElement?: React.ReactElement;
2634
+ isRenderingPending?: boolean;
2635
+ };
2636
+ }) => import("react/jsx-runtime").JSX.Element;
2637
+ renderProps: any;
2638
+ renderArgs: Record<string, unknown> | undefined;
2639
+ isRenderingPending: boolean;
2640
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2641
+ } & {
2642
+ doReload(): void;
2643
+ setStatusMessage(message: string): void;
2644
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
2645
+ setMessage(messageText: string): void;
2646
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2647
+ setError(error: unknown): void;
2648
+ reload(): void;
2649
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2650
+ beforeDestroy(): void;
2651
+ } & {
2652
+ readonly statusMessage: any;
2653
+ } & {
2654
+ afterAttach(): void;
2655
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2656
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2657
+ maxFeatureScreenDensity: {
2658
+ type: string;
2659
+ description: string;
2660
+ defaultValue: number;
2661
+ };
2662
+ fetchSizeLimit: {
2663
+ type: string;
2664
+ defaultValue: number;
2665
+ description: string;
2666
+ };
2667
+ height: {
2668
+ type: string;
2669
+ defaultValue: number;
2670
+ description: string;
2671
+ };
2672
+ mouseover: {
2673
+ type: string;
2674
+ description: string;
2675
+ defaultValue: string;
2676
+ contextVariable: string[];
2677
+ };
2678
+ jexlFilters: {
2679
+ type: string;
2680
+ description: string;
2681
+ defaultValue: never[];
2682
+ };
2683
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2684
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2685
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2686
+ } & {
2687
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBareDisplay">;
2688
+ configuration: AnyConfigurationSchemaType;
2689
+ } & {
2690
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
2691
+ layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
2692
+ configuration: AnyConfigurationSchemaType;
2693
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2694
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2695
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2696
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2697
+ rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
2698
+ lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2699
+ jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
2700
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2701
+ clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2702
+ treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2703
+ lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2704
+ }, {
2705
+ rendererTypeName: string;
2706
+ error: unknown;
2707
+ statusMessage: string | undefined;
2708
+ } & {
2709
+ readonly RenderingComponent: React.FC<{
2710
+ model: {
2711
+ id: string;
2712
+ type: string;
2713
+ rpcDriverName: string | undefined;
2714
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2715
+ rendererTypeName: string;
2716
+ error: unknown;
2717
+ statusMessage: string | undefined;
2718
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2719
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2720
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2721
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2722
+ }, {
2723
+ rendererTypeName: string;
2724
+ error: unknown;
2725
+ statusMessage: string | undefined;
2726
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2727
+ onHorizontalScroll?: () => void;
2728
+ blockState?: Record<string, any>;
2729
+ }>;
2730
+ readonly DisplayBlurb: React.FC<{
2731
+ model: {
2732
+ id: string;
2733
+ type: string;
2734
+ rpcDriverName: string | undefined;
2735
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2736
+ rendererTypeName: string;
2737
+ error: unknown;
2738
+ statusMessage: string | undefined;
2739
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2740
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2741
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2742
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2743
+ }, {
2744
+ rendererTypeName: string;
2745
+ error: unknown;
2746
+ statusMessage: string | undefined;
2747
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2748
+ }> | null;
2749
+ readonly adapterConfig: any;
2750
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2751
+ readonly isMinimized: boolean;
2752
+ readonly parentDisplay: any;
2753
+ readonly effectiveRpcDriverName: any;
2754
+ } & {
2755
+ renderProps(): any;
2756
+ renderingProps(): {
2757
+ displayModel: {
2758
+ id: string;
2759
+ type: string;
2760
+ rpcDriverName: string | undefined;
2761
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2762
+ rendererTypeName: string;
2763
+ error: unknown;
2764
+ statusMessage: string | undefined;
2765
+ } & {
2766
+ readonly RenderingComponent: React.FC<{
2767
+ model: {
2768
+ id: string;
2769
+ type: string;
2770
+ rpcDriverName: string | undefined;
2771
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2772
+ rendererTypeName: string;
2773
+ error: unknown;
2774
+ statusMessage: string | undefined;
2775
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2776
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2777
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2778
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2779
+ }, {
2780
+ rendererTypeName: string;
2781
+ error: unknown;
2782
+ statusMessage: string | undefined;
2783
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2784
+ onHorizontalScroll?: () => void;
2785
+ blockState?: Record<string, any>;
2786
+ }>;
2787
+ readonly DisplayBlurb: React.FC<{
2788
+ model: {
2789
+ id: string;
2790
+ type: string;
2791
+ rpcDriverName: string | undefined;
2792
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2793
+ rendererTypeName: string;
2794
+ error: unknown;
2795
+ statusMessage: string | undefined;
2796
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2797
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2798
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2799
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2800
+ }, {
2801
+ rendererTypeName: string;
2802
+ error: unknown;
2803
+ statusMessage: string | undefined;
2804
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2805
+ }> | null;
2806
+ readonly adapterConfig: any;
2807
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2808
+ readonly isMinimized: boolean;
2809
+ readonly parentDisplay: any;
2810
+ readonly effectiveRpcDriverName: any;
2811
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2812
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2813
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2814
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2815
+ }, {
2816
+ rendererTypeName: string;
2817
+ error: unknown;
2818
+ statusMessage: string | undefined;
2819
+ } & {
2820
+ readonly RenderingComponent: React.FC<{
2821
+ model: {
2822
+ id: string;
2823
+ type: string;
2824
+ rpcDriverName: string | undefined;
2825
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2826
+ rendererTypeName: string;
2827
+ error: unknown;
2828
+ statusMessage: string | undefined;
2829
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2830
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2831
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2832
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2833
+ }, {
2834
+ rendererTypeName: string;
2835
+ error: unknown;
2836
+ statusMessage: string | undefined;
2837
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2838
+ onHorizontalScroll?: () => void;
2839
+ blockState?: Record<string, any>;
2840
+ }>;
2841
+ readonly DisplayBlurb: React.FC<{
2842
+ model: {
2843
+ id: string;
2844
+ type: string;
2845
+ rpcDriverName: string | undefined;
2846
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2847
+ rendererTypeName: string;
2848
+ error: unknown;
2849
+ statusMessage: string | undefined;
2850
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2851
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2852
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2853
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2854
+ }, {
2855
+ rendererTypeName: string;
2856
+ error: unknown;
2857
+ statusMessage: string | undefined;
2858
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2859
+ }> | null;
2860
+ readonly adapterConfig: any;
2861
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2862
+ readonly isMinimized: boolean;
2863
+ readonly parentDisplay: any;
2864
+ readonly effectiveRpcDriverName: any;
2865
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2866
+ };
2867
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2868
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2869
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2870
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2871
+ regionCannotBeRendered(): null;
2872
+ } & {
2873
+ setStatusMessage(arg?: string): void;
2874
+ setError(error?: unknown): void;
2875
+ setRpcDriverName(rpcDriverName: string): void;
2876
+ reload(): void;
2877
+ } & {
2878
+ scrollTop: number;
2879
+ } & {
2880
+ readonly height: number;
2881
+ } & {
2882
+ setScrollTop(scrollTop: number): void;
2883
+ setHeight(displayHeight: number): number;
2884
+ resizeHeight(distance: number): number;
2885
+ } & {
2886
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2887
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2888
+ currStatsBpPerPx: number;
2889
+ } & {
2890
+ readonly currentBytesRequested: number;
2891
+ readonly currentFeatureScreenDensity: number;
2892
+ readonly maxFeatureScreenDensity: any;
2893
+ readonly featureDensityStatsReady: boolean;
2894
+ readonly maxAllowableBytes: number;
2895
+ } & {
2896
+ afterAttach(): void;
2897
+ } & {
2898
+ setCurrStatsBpPerPx(n: number): void;
2899
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2900
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2901
+ setFeatureDensityStatsP(arg: any): void;
2902
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2903
+ clearFeatureDensityStats(): void;
2904
+ } & {
2905
+ readonly regionTooLarge: boolean;
2906
+ readonly regionTooLargeReason: string;
2907
+ } & {
2908
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2909
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2910
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2911
+ } & {
2912
+ mouseoverExtraInformation: string | undefined;
2913
+ featureIdUnderMouse: undefined | string;
2914
+ subfeatureIdUnderMouse: undefined | string;
2915
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
2916
+ } & {
2917
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2918
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2919
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2920
+ } & {
2921
+ readonly renderDelay: number;
2922
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2923
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
2924
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2925
+ readonly selectedFeatureId: string | undefined;
2926
+ readonly featureWidgetType: {
2927
+ type: string;
2928
+ id: string;
2929
+ };
2930
+ } & {
2931
+ readonly showTooltipsEnabled: boolean;
2932
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
2933
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
2934
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
2935
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2936
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2937
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2938
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2939
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2940
+ } & {
2941
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2942
+ deleteBlock(key: string): void;
2943
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
2944
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
2945
+ clearFeatureSelection(): void;
2946
+ setFeatureIdUnderMouse(feature?: string): void;
2947
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2948
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
2949
+ setMouseoverExtraInformation(extra?: string): void;
2950
+ setShowLegend(s: boolean): void;
2951
+ setShowTooltips(arg: boolean): void;
2952
+ } & {
2953
+ reload(): Promise<void>;
2954
+ } & {
2955
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2956
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2957
+ } & {
2958
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2959
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2960
+ renderingProps(): {
2961
+ displayModel: {
2962
+ id: string;
2963
+ type: string;
2964
+ rpcDriverName: string | undefined;
2965
+ heightPreConfig: number | undefined;
2966
+ userBpPerPxLimit: number | undefined;
2967
+ userByteSizeLimit: number | undefined;
2968
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
2969
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2970
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2971
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2972
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2973
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2974
+ }, {
2975
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
2976
+ filled: boolean;
2977
+ reactElement: React.ReactElement | undefined;
2978
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
2979
+ layout: any;
2980
+ blockStatusMessage: string;
2981
+ error: unknown;
2982
+ message: string | undefined;
2983
+ maxHeightReached: boolean;
2984
+ ReactComponent: ({ model, }: {
2985
+ model: {
2986
+ error?: unknown;
2987
+ reload: () => void;
2988
+ message?: React.ReactNode;
2989
+ statusMessage?: string;
2990
+ reactElement?: React.ReactElement;
2991
+ isRenderingPending?: boolean;
2992
+ };
2993
+ }) => import("react/jsx-runtime").JSX.Element;
2994
+ renderProps: any;
2995
+ renderArgs: Record<string, unknown> | undefined;
2996
+ isRenderingPending: boolean;
2997
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2998
+ } & {
2999
+ doReload(): void;
3000
+ setStatusMessage(message: string): void;
3001
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3002
+ setMessage(messageText: string): void;
3003
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3004
+ setError(error: unknown): void;
3005
+ reload(): void;
3006
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3007
+ beforeDestroy(): void;
3008
+ } & {
3009
+ readonly statusMessage: any;
3010
+ } & {
3011
+ afterAttach(): void;
3012
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3013
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3014
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3015
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3016
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3017
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3018
+ }, {
3019
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
3020
+ filled: boolean;
3021
+ reactElement: React.ReactElement | undefined;
3022
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
3023
+ layout: any;
3024
+ blockStatusMessage: string;
3025
+ error: unknown;
3026
+ message: string | undefined;
3027
+ maxHeightReached: boolean;
3028
+ ReactComponent: ({ model, }: {
3029
+ model: {
3030
+ error?: unknown;
3031
+ reload: () => void;
3032
+ message?: React.ReactNode;
3033
+ statusMessage?: string;
3034
+ reactElement?: React.ReactElement;
3035
+ isRenderingPending?: boolean;
3036
+ };
3037
+ }) => import("react/jsx-runtime").JSX.Element;
3038
+ renderProps: any;
3039
+ renderArgs: Record<string, unknown> | undefined;
3040
+ isRenderingPending: boolean;
3041
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3042
+ } & {
3043
+ doReload(): void;
3044
+ setStatusMessage(message: string): void;
3045
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3046
+ setMessage(messageText: string): void;
3047
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3048
+ setError(error: unknown): void;
3049
+ reload(): void;
3050
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3051
+ beforeDestroy(): void;
3052
+ } & {
3053
+ readonly statusMessage: any;
3054
+ } & {
3055
+ afterAttach(): void;
3056
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
3057
+ configuration: {
3058
+ [x: string]: any;
3059
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3060
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3061
+ [x: string]: any;
3062
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3063
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3064
+ [x: string]: any;
3065
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3066
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3067
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3068
+ maxFeatureScreenDensity: {
3069
+ type: string;
3070
+ description: string;
3071
+ defaultValue: number;
3072
+ };
3073
+ fetchSizeLimit: {
3074
+ type: string;
3075
+ defaultValue: number;
3076
+ description: string;
3077
+ };
3078
+ height: {
3079
+ type: string;
3080
+ defaultValue: number;
3081
+ description: string;
3082
+ };
3083
+ mouseover: {
3084
+ type: string;
3085
+ description: string;
3086
+ defaultValue: string;
3087
+ contextVariable: string[];
3088
+ };
3089
+ jexlFilters: {
3090
+ type: string;
3091
+ description: string;
3092
+ defaultValue: never[];
3093
+ };
3094
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
3095
+ showLegend: boolean | undefined;
3096
+ showTooltips: boolean | undefined;
3097
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3098
+ rendererTypeName: string;
3099
+ error: unknown;
3100
+ statusMessage: string | undefined;
3101
+ } & {
3102
+ readonly RenderingComponent: React.FC<{
3103
+ model: {
3104
+ id: string;
3105
+ type: string;
3106
+ rpcDriverName: string | undefined;
3107
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3108
+ rendererTypeName: string;
3109
+ error: unknown;
3110
+ statusMessage: string | undefined;
3111
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3112
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3113
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3114
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3115
+ }, {
3116
+ rendererTypeName: string;
3117
+ error: unknown;
3118
+ statusMessage: string | undefined;
3119
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3120
+ onHorizontalScroll?: () => void;
3121
+ blockState?: Record<string, any>;
3122
+ }>;
3123
+ readonly DisplayBlurb: React.FC<{
3124
+ model: {
3125
+ id: string;
3126
+ type: string;
3127
+ rpcDriverName: string | undefined;
3128
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3129
+ rendererTypeName: string;
3130
+ error: unknown;
3131
+ statusMessage: string | undefined;
3132
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3133
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3134
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3135
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3136
+ }, {
3137
+ rendererTypeName: string;
3138
+ error: unknown;
3139
+ statusMessage: string | undefined;
3140
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3141
+ }> | null;
3142
+ readonly adapterConfig: any;
3143
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3144
+ readonly isMinimized: boolean;
3145
+ readonly parentDisplay: any;
3146
+ readonly effectiveRpcDriverName: any;
3147
+ } & {
3148
+ renderProps(): any;
3149
+ renderingProps(): {
3150
+ displayModel: {
3151
+ id: string;
3152
+ type: string;
3153
+ rpcDriverName: string | undefined;
3154
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3155
+ rendererTypeName: string;
3156
+ error: unknown;
3157
+ statusMessage: string | undefined;
3158
+ } & {
3159
+ readonly RenderingComponent: React.FC<{
3160
+ model: {
3161
+ id: string;
3162
+ type: string;
3163
+ rpcDriverName: string | undefined;
3164
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3165
+ rendererTypeName: string;
3166
+ error: unknown;
3167
+ statusMessage: string | undefined;
3168
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3169
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3170
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3171
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3172
+ }, {
3173
+ rendererTypeName: string;
3174
+ error: unknown;
3175
+ statusMessage: string | undefined;
3176
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3177
+ onHorizontalScroll?: () => void;
3178
+ blockState?: Record<string, any>;
3179
+ }>;
3180
+ readonly DisplayBlurb: React.FC<{
3181
+ model: {
3182
+ id: string;
3183
+ type: string;
3184
+ rpcDriverName: string | undefined;
3185
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3186
+ rendererTypeName: string;
3187
+ error: unknown;
3188
+ statusMessage: string | undefined;
3189
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3190
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3191
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3192
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3193
+ }, {
3194
+ rendererTypeName: string;
3195
+ error: unknown;
3196
+ statusMessage: string | undefined;
3197
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3198
+ }> | null;
3199
+ readonly adapterConfig: any;
3200
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3201
+ readonly isMinimized: boolean;
3202
+ readonly parentDisplay: any;
3203
+ readonly effectiveRpcDriverName: any;
3204
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3205
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3206
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3207
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3208
+ }, {
3209
+ rendererTypeName: string;
3210
+ error: unknown;
3211
+ statusMessage: string | undefined;
3212
+ } & {
3213
+ readonly RenderingComponent: React.FC<{
3214
+ model: {
3215
+ id: string;
3216
+ type: string;
3217
+ rpcDriverName: string | undefined;
3218
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3219
+ rendererTypeName: string;
3220
+ error: unknown;
3221
+ statusMessage: string | undefined;
3222
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3223
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3224
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3225
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3226
+ }, {
3227
+ rendererTypeName: string;
3228
+ error: unknown;
3229
+ statusMessage: string | undefined;
3230
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3231
+ onHorizontalScroll?: () => void;
3232
+ blockState?: Record<string, any>;
3233
+ }>;
3234
+ readonly DisplayBlurb: React.FC<{
3235
+ model: {
3236
+ id: string;
3237
+ type: string;
3238
+ rpcDriverName: string | undefined;
3239
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3240
+ rendererTypeName: string;
3241
+ error: unknown;
3242
+ statusMessage: string | undefined;
3243
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3244
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3245
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3246
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3247
+ }, {
3248
+ rendererTypeName: string;
3249
+ error: unknown;
3250
+ statusMessage: string | undefined;
3251
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3252
+ }> | null;
3253
+ readonly adapterConfig: any;
3254
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3255
+ readonly isMinimized: boolean;
3256
+ readonly parentDisplay: any;
3257
+ readonly effectiveRpcDriverName: any;
3258
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3259
+ };
3260
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3261
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3262
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3263
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3264
+ regionCannotBeRendered(): null;
3265
+ } & {
3266
+ setStatusMessage(arg?: string): void;
3267
+ setError(error?: unknown): void;
3268
+ setRpcDriverName(rpcDriverName: string): void;
3269
+ reload(): void;
3270
+ } & {
3271
+ scrollTop: number;
3272
+ } & {
3273
+ readonly height: number;
3274
+ } & {
3275
+ setScrollTop(scrollTop: number): void;
3276
+ setHeight(displayHeight: number): number;
3277
+ resizeHeight(distance: number): number;
3278
+ } & {
3279
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3280
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3281
+ currStatsBpPerPx: number;
3282
+ } & {
3283
+ readonly currentBytesRequested: number;
3284
+ readonly currentFeatureScreenDensity: number;
3285
+ readonly maxFeatureScreenDensity: any;
3286
+ readonly featureDensityStatsReady: boolean;
3287
+ readonly maxAllowableBytes: number;
3288
+ } & {
3289
+ afterAttach(): void;
3290
+ } & {
3291
+ setCurrStatsBpPerPx(n: number): void;
3292
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3293
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3294
+ setFeatureDensityStatsP(arg: any): void;
3295
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3296
+ clearFeatureDensityStats(): void;
3297
+ } & {
3298
+ readonly regionTooLarge: boolean;
3299
+ readonly regionTooLargeReason: string;
3300
+ } & {
3301
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3302
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3303
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3304
+ } & {
3305
+ mouseoverExtraInformation: string | undefined;
3306
+ featureIdUnderMouse: undefined | string;
3307
+ subfeatureIdUnderMouse: undefined | string;
3308
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
3309
+ } & {
3310
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3311
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3312
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3313
+ } & {
3314
+ readonly renderDelay: number;
3315
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3316
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3317
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3318
+ readonly selectedFeatureId: string | undefined;
3319
+ readonly featureWidgetType: {
3320
+ type: string;
3321
+ id: string;
3322
+ };
3323
+ } & {
3324
+ readonly showTooltipsEnabled: boolean;
3325
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
3326
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
3327
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
3328
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3329
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3330
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3331
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3332
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3333
+ } & {
3334
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3335
+ deleteBlock(key: string): void;
3336
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
3337
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
3338
+ clearFeatureSelection(): void;
3339
+ setFeatureIdUnderMouse(feature?: string): void;
3340
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3341
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
3342
+ setMouseoverExtraInformation(extra?: string): void;
3343
+ setShowLegend(s: boolean): void;
3344
+ setShowTooltips(arg: boolean): void;
3345
+ } & {
3346
+ reload(): Promise<void>;
3347
+ } & {
3348
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3349
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3350
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3351
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3352
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3353
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3354
+ } & {
3355
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3356
+ } & {
3357
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3358
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3359
+ } & {
3360
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3361
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3362
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3363
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3364
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3365
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3366
+ }, {
3367
+ stopToken: import("@jbrowse/core/util").StopToken | undefined;
3368
+ filled: boolean;
3369
+ reactElement: React.ReactElement | undefined;
3370
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
3371
+ layout: any;
3372
+ blockStatusMessage: string;
3373
+ error: unknown;
3374
+ message: string | undefined;
3375
+ maxHeightReached: boolean;
3376
+ ReactComponent: ({ model, }: {
3377
+ model: {
3378
+ error?: unknown;
3379
+ reload: () => void;
3380
+ message?: React.ReactNode;
3381
+ statusMessage?: string;
3382
+ reactElement?: React.ReactElement;
3383
+ isRenderingPending?: boolean;
3384
+ };
3385
+ }) => import("react/jsx-runtime").JSX.Element;
3386
+ renderProps: any;
3387
+ renderArgs: Record<string, unknown> | undefined;
3388
+ isRenderingPending: boolean;
3389
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3390
+ } & {
3391
+ doReload(): void;
3392
+ setStatusMessage(message: string): void;
3393
+ setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
3394
+ setMessage(messageText: string): void;
3395
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3396
+ setError(error: unknown): void;
3397
+ reload(): void;
3398
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3399
+ beforeDestroy(): void;
3400
+ } & {
3401
+ readonly statusMessage: any;
3402
+ } & {
3403
+ afterAttach(): void;
3404
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3405
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3406
+ maxFeatureScreenDensity: {
3407
+ type: string;
3408
+ description: string;
3409
+ defaultValue: number;
3410
+ };
3411
+ fetchSizeLimit: {
3412
+ type: string;
3413
+ defaultValue: number;
3414
+ description: string;
3415
+ };
3416
+ height: {
3417
+ type: string;
3418
+ defaultValue: number;
3419
+ description: string;
3420
+ };
3421
+ mouseover: {
3422
+ type: string;
3423
+ description: string;
3424
+ defaultValue: string;
3425
+ contextVariable: string[];
3426
+ };
3427
+ jexlFilters: {
3428
+ type: string;
3429
+ description: string;
3430
+ defaultValue: never[];
3431
+ };
3432
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
3433
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3434
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3435
+ }, {
3436
+ rendererTypeName: string;
3437
+ error: unknown;
3438
+ statusMessage: string | undefined;
3439
+ } & {
3440
+ readonly RenderingComponent: React.FC<{
3441
+ model: {
3442
+ id: string;
3443
+ type: string;
3444
+ rpcDriverName: string | undefined;
3445
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3446
+ rendererTypeName: string;
3447
+ error: unknown;
3448
+ statusMessage: string | undefined;
3449
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3450
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3451
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3452
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3453
+ }, {
3454
+ rendererTypeName: string;
3455
+ error: unknown;
3456
+ statusMessage: string | undefined;
3457
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3458
+ onHorizontalScroll?: () => void;
3459
+ blockState?: Record<string, any>;
3460
+ }>;
3461
+ readonly DisplayBlurb: React.FC<{
3462
+ model: {
3463
+ id: string;
3464
+ type: string;
3465
+ rpcDriverName: string | undefined;
3466
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3467
+ rendererTypeName: string;
3468
+ error: unknown;
3469
+ statusMessage: string | undefined;
3470
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3471
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3472
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3473
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3474
+ }, {
3475
+ rendererTypeName: string;
3476
+ error: unknown;
3477
+ statusMessage: string | undefined;
3478
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3479
+ }> | null;
3480
+ readonly adapterConfig: any;
3481
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3482
+ readonly isMinimized: boolean;
3483
+ readonly parentDisplay: any;
3484
+ readonly effectiveRpcDriverName: any;
3485
+ } & {
3486
+ renderProps(): any;
3487
+ renderingProps(): {
3488
+ displayModel: {
3489
+ id: string;
3490
+ type: string;
3491
+ rpcDriverName: string | undefined;
3492
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3493
+ rendererTypeName: string;
3494
+ error: unknown;
3495
+ statusMessage: string | undefined;
3496
+ } & {
3497
+ readonly RenderingComponent: React.FC<{
3498
+ model: {
3499
+ id: string;
3500
+ type: string;
3501
+ rpcDriverName: string | undefined;
3502
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3503
+ rendererTypeName: string;
3504
+ error: unknown;
3505
+ statusMessage: string | undefined;
3506
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3507
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3508
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3509
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3510
+ }, {
3511
+ rendererTypeName: string;
3512
+ error: unknown;
3513
+ statusMessage: string | undefined;
3514
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3515
+ onHorizontalScroll?: () => void;
3516
+ blockState?: Record<string, any>;
3517
+ }>;
3518
+ readonly DisplayBlurb: React.FC<{
3519
+ model: {
3520
+ id: string;
3521
+ type: string;
3522
+ rpcDriverName: string | undefined;
3523
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3524
+ rendererTypeName: string;
3525
+ error: unknown;
3526
+ statusMessage: string | undefined;
3527
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3528
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3529
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3530
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3531
+ }, {
3532
+ rendererTypeName: string;
3533
+ error: unknown;
3534
+ statusMessage: string | undefined;
3535
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3536
+ }> | null;
3537
+ readonly adapterConfig: any;
3538
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3539
+ readonly isMinimized: boolean;
3540
+ readonly parentDisplay: any;
3541
+ readonly effectiveRpcDriverName: any;
3542
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3543
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3544
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3545
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3546
+ }, {
3547
+ rendererTypeName: string;
3548
+ error: unknown;
3549
+ statusMessage: string | undefined;
3550
+ } & {
3551
+ readonly RenderingComponent: React.FC<{
3552
+ model: {
3553
+ id: string;
3554
+ type: string;
3555
+ rpcDriverName: string | undefined;
3556
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3557
+ rendererTypeName: string;
3558
+ error: unknown;
3559
+ statusMessage: string | undefined;
3560
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3561
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3562
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3563
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3564
+ }, {
3565
+ rendererTypeName: string;
3566
+ error: unknown;
3567
+ statusMessage: string | undefined;
3568
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3569
+ onHorizontalScroll?: () => void;
3570
+ blockState?: Record<string, any>;
3571
+ }>;
3572
+ readonly DisplayBlurb: React.FC<{
3573
+ model: {
3574
+ id: string;
3575
+ type: string;
3576
+ rpcDriverName: string | undefined;
3577
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3578
+ rendererTypeName: string;
3579
+ error: unknown;
3580
+ statusMessage: string | undefined;
3581
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3582
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3583
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3584
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3585
+ }, {
3586
+ rendererTypeName: string;
3587
+ error: unknown;
3588
+ statusMessage: string | undefined;
3589
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3590
+ }> | null;
3591
+ readonly adapterConfig: any;
3592
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3593
+ readonly isMinimized: boolean;
3594
+ readonly parentDisplay: any;
3595
+ readonly effectiveRpcDriverName: any;
3596
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3597
+ };
3598
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3599
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3600
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3601
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3602
+ regionCannotBeRendered(): null;
3603
+ } & {
3604
+ setStatusMessage(arg?: string): void;
3605
+ setError(error?: unknown): void;
3606
+ setRpcDriverName(rpcDriverName: string): void;
3607
+ reload(): void;
3608
+ } & {
3609
+ scrollTop: number;
3610
+ } & {
3611
+ readonly height: number;
3612
+ } & {
3613
+ setScrollTop(scrollTop: number): void;
3614
+ setHeight(displayHeight: number): number;
3615
+ resizeHeight(distance: number): number;
3616
+ } & {
3617
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3618
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3619
+ currStatsBpPerPx: number;
3620
+ } & {
3621
+ readonly currentBytesRequested: number;
3622
+ readonly currentFeatureScreenDensity: number;
3623
+ readonly maxFeatureScreenDensity: any;
3624
+ readonly featureDensityStatsReady: boolean;
3625
+ readonly maxAllowableBytes: number;
3626
+ } & {
3627
+ afterAttach(): void;
3628
+ } & {
3629
+ setCurrStatsBpPerPx(n: number): void;
3630
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3631
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3632
+ setFeatureDensityStatsP(arg: any): void;
3633
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3634
+ clearFeatureDensityStats(): void;
3635
+ } & {
3636
+ readonly regionTooLarge: boolean;
3637
+ readonly regionTooLargeReason: string;
3638
+ } & {
3639
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3640
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3641
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3642
+ } & {
3643
+ mouseoverExtraInformation: string | undefined;
3644
+ featureIdUnderMouse: undefined | string;
3645
+ subfeatureIdUnderMouse: undefined | string;
3646
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
3647
+ } & {
3648
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3649
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3650
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3651
+ } & {
3652
+ readonly renderDelay: number;
3653
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3654
+ legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3655
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3656
+ readonly selectedFeatureId: string | undefined;
3657
+ readonly featureWidgetType: {
3658
+ type: string;
3659
+ id: string;
3660
+ };
3661
+ } & {
3662
+ readonly showTooltipsEnabled: boolean;
3663
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
3664
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
3665
+ getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
3666
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3667
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3668
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3669
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3670
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3671
+ } & {
3672
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3673
+ deleteBlock(key: string): void;
3674
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
3675
+ navToFeature(feature: import("@jbrowse/core/util").Feature): void;
3676
+ clearFeatureSelection(): void;
3677
+ setFeatureIdUnderMouse(feature?: string): void;
3678
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3679
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
3680
+ setMouseoverExtraInformation(extra?: string): void;
3681
+ setShowLegend(s: boolean): void;
3682
+ setShowTooltips(arg: boolean): void;
3683
+ } & {
3684
+ reload(): Promise<void>;
3685
+ } & {
3686
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3687
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3688
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3689
+ onMouseMove(_: unknown, featureId?: string): void;
3690
+ onMouseLeave(_: unknown): void;
3691
+ onContextMenu(_: unknown): void;
3692
+ };
3693
+ renderProps(): any;
3694
+ } & {
3695
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
3696
+ afterAttach(): void;
3697
+ } & {
3698
+ readonly rendererConfig: Omit<any, symbol>;
3699
+ readonly rendererTypeName: any;
3700
+ } & {
3701
+ renderProps(): any;
3702
+ } & {
3703
+ sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
3704
+ simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
3705
+ featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
3706
+ sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
3707
+ colorByApplied: boolean;
3708
+ featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
3709
+ hasPhased: boolean;
3710
+ sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
3711
+ hoveredGenotype: {
3712
+ genotype: string;
3713
+ name: string;
3714
+ } | undefined;
3715
+ hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
3716
+ treeCanvas: HTMLCanvasElement | undefined;
3717
+ mouseoverCanvas: HTMLCanvasElement | undefined;
3718
+ } & {
3719
+ readonly renderingMode: string;
3720
+ } & {
3721
+ setJexlFilters(f?: string[]): void;
3722
+ setRowHeight(arg: number | "auto"): void;
3723
+ setHoveredGenotype(arg?: {
3724
+ genotype: string;
3725
+ name: string;
3726
+ }): void;
3727
+ setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
3728
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
3729
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
3730
+ setTreeAreaWidth(width: number): void;
3731
+ setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
3732
+ setColorByApplied(value: boolean): void;
3733
+ setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
3734
+ clearLayout(): void;
3735
+ setClusterTree(tree?: string): void;
3736
+ setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
3737
+ setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
3738
+ setSources(sources: import("../shared/types.ts").Source[]): void;
3739
+ setMafFilter(arg: number): void;
3740
+ setShowSidebarLabels(arg: boolean): void;
3741
+ setShowTree(arg: boolean): void;
3742
+ setPhasedMode(arg: string): void;
3743
+ setAutoHeight(auto: boolean): void;
3744
+ setHasPhased(arg: boolean): void;
3745
+ setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
3746
+ setReferenceDrawingMode(arg: string): void;
3747
+ } & {
3748
+ readonly autoHeight: boolean;
3749
+ readonly minorAlleleFrequencyFilter: any;
3750
+ readonly showSidebarLabels: any;
3751
+ readonly showTree: any;
3752
+ readonly referenceDrawingMode: string;
3753
+ activeFilters(): any;
3754
+ readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
3755
+ readonly sources: import("../shared/types.ts").Source[] | undefined;
3756
+ readonly root: any;
3757
+ } & {
3758
+ readonly sourceMap: {
3759
+ [k: string]: import("../shared/types.ts").Source;
3760
+ } | undefined;
3761
+ readonly availableHeight: number;
3762
+ readonly nrow: number;
3763
+ readonly rowHeight: number;
3764
+ readonly hierarchy: any;
3765
+ adapterProps(): any;
3766
+ } & {
3767
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
3768
+ label: string;
3769
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3770
+ muiName: string;
3771
+ };
3772
+ type: string;
3773
+ subMenu: ({
3774
+ label: string;
3775
+ type: string;
3776
+ checked: any;
3777
+ onClick: () => void;
3778
+ disabled?: undefined;
3779
+ helpText?: undefined;
3780
+ } | {
3781
+ label: string;
3782
+ type: string;
3783
+ checked: any;
3784
+ disabled: boolean;
3785
+ onClick: () => void;
3786
+ helpText?: undefined;
3787
+ } | {
3788
+ label: string;
3789
+ helpText: string;
3790
+ type: string;
3791
+ checked: boolean;
3792
+ onClick: () => void;
3793
+ disabled?: undefined;
3794
+ })[];
3795
+ onClick?: undefined;
3796
+ } | {
3797
+ label: string;
3798
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3799
+ muiName: string;
3800
+ };
3801
+ subMenu: ({
3802
+ label: string;
3803
+ disabled: boolean;
3804
+ onClick: () => void;
3805
+ type?: undefined;
3806
+ checked?: undefined;
3807
+ } | {
3808
+ label: string;
3809
+ type: string;
3810
+ checked: boolean;
3811
+ onClick: () => void;
3812
+ disabled?: undefined;
3813
+ })[];
3814
+ type?: undefined;
3815
+ onClick?: undefined;
3816
+ } | {
3817
+ label: string;
3818
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3819
+ muiName: string;
3820
+ };
3821
+ subMenu: ({
3822
+ label: string;
3823
+ helpText: string;
3824
+ type: string;
3825
+ checked: boolean;
3826
+ onClick: () => void;
3827
+ disabled?: undefined;
3828
+ } | {
3829
+ label: string;
3830
+ helpText: string;
3831
+ disabled: boolean;
3832
+ checked: boolean;
3833
+ type: string;
3834
+ onClick: () => void;
3835
+ })[];
3836
+ type?: undefined;
3837
+ onClick?: undefined;
3838
+ } | {
3839
+ label: string;
3840
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3841
+ muiName: string;
3842
+ };
3843
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
3844
+ type?: undefined;
3845
+ onClick?: undefined;
3846
+ } | {
3847
+ label: string;
3848
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3849
+ muiName: string;
3850
+ };
3851
+ onClick: () => void;
3852
+ type?: undefined;
3853
+ subMenu?: undefined;
3854
+ })[];
3855
+ } & {
3856
+ readonly canDisplayLabels: any;
3857
+ readonly totalHeight: number;
3858
+ readonly featuresReady: boolean;
3859
+ getPortableSettings(): {
3860
+ minorAlleleFrequencyFilter: any;
3861
+ showSidebarLabelsSetting: boolean | undefined;
3862
+ showTree: any;
3863
+ renderingMode: string;
3864
+ lengthCutoffFilter: number;
3865
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
3866
+ referenceDrawingMode: string;
3867
+ clusterTree: string | undefined;
3868
+ treeAreaWidth: number;
3869
+ layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
3870
+ height: number;
3871
+ };
3872
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3873
+ onFeatureClick(_: React.MouseEvent, featureId: string): Promise<void>;
3874
+ };
3875
+ legendItems(): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
3876
+ } & {
3877
+ afterAttach(): void;
3878
+ } & {
3879
+ readonly blockType: string;
3880
+ readonly prefersOffset: boolean;
3881
+ readonly featureWidgetType: {
3882
+ type: string;
3883
+ id: string;
3884
+ };
1281
3885
  } & {
1282
3886
  renderProps(): any;
1283
3887
  } & {
@@ -1376,14 +3980,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
1376
3980
  type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
1377
3981
  layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
1378
3982
  configuration: AnyConfigurationSchemaType;
1379
- minorAlleleFrequencyFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1380
- showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
1381
- showTree: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
1382
- renderingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3983
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3984
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3985
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3986
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1383
3987
  rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
1384
3988
  lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1385
3989
  jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
1386
- referenceDrawingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3990
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1387
3991
  clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1388
3992
  treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1389
3993
  lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;