@jbrowse/plugin-variants 4.0.4 → 4.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/LDDisplay/SharedLDConfigSchema.d.ts +102 -0
- package/esm/LDDisplay/SharedLDConfigSchema.js +83 -0
- package/esm/LDDisplay/afterAttach.d.ts +2 -0
- package/esm/LDDisplay/afterAttach.js +123 -0
- package/esm/LDDisplay/components/BaseDisplayComponent.d.ts +15 -0
- package/esm/LDDisplay/components/BaseDisplayComponent.js +39 -0
- package/esm/LDDisplay/components/LDColorLegend.d.ts +15 -0
- package/esm/LDDisplay/components/LDColorLegend.js +75 -0
- package/esm/LDDisplay/components/LDDisplayComponent.d.ts +5 -0
- package/esm/LDDisplay/components/LDDisplayComponent.js +203 -0
- package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +16 -0
- package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.js +109 -0
- package/esm/LDDisplay/configSchema1.d.ts +115 -0
- package/esm/LDDisplay/configSchema1.js +16 -0
- package/esm/LDDisplay/configSchema2.d.ts +115 -0
- package/esm/LDDisplay/configSchema2.js +16 -0
- package/esm/LDDisplay/index.d.ts +2 -0
- package/esm/LDDisplay/index.js +35 -0
- package/esm/LDDisplay/renderSvg.d.ts +3 -0
- package/esm/LDDisplay/renderSvg.js +36 -0
- package/esm/LDDisplay/shared.d.ts +367 -0
- package/esm/LDDisplay/shared.js +467 -0
- package/esm/LDDisplay/stateModel1.d.ts +365 -0
- package/esm/LDDisplay/stateModel1.js +10 -0
- package/esm/LDDisplay/stateModel2.d.ts +365 -0
- package/esm/LDDisplay/stateModel2.js +10 -0
- package/esm/LDRenderer/LDRenderer.d.ts +30 -0
- package/esm/LDRenderer/LDRenderer.js +109 -0
- package/esm/LDRenderer/components/LDRendering.d.ts +2 -0
- package/esm/LDRenderer/components/LDRendering.js +4 -0
- package/esm/LDRenderer/configSchema.d.ts +8 -0
- package/esm/LDRenderer/configSchema.js +10 -0
- package/esm/LDRenderer/index.d.ts +2 -0
- package/esm/LDRenderer/index.js +11 -0
- package/esm/LDRenderer/makeImageData.d.ts +20 -0
- package/esm/LDRenderer/makeImageData.js +157 -0
- package/esm/LDRenderer/types.d.ts +8 -0
- package/esm/LDRenderer/types.js +1 -0
- package/esm/LDTrack/configSchema.d.ts +85 -0
- package/esm/LDTrack/configSchema.js +7 -0
- package/esm/LDTrack/index.d.ts +2 -0
- package/esm/LDTrack/index.js +14 -0
- package/esm/LinearVariantDisplay/model.d.ts +126 -42
- package/esm/LinearVariantDisplay/model.js +46 -8
- package/esm/MultiLinearVariantDisplay/configSchema.d.ts +27 -1
- package/esm/MultiLinearVariantDisplay/model.d.ts +2635 -31
- package/esm/MultiLinearVariantDisplay/model.js +6 -0
- package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +10 -2
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +25 -0
- package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +26 -0
- package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +2636 -32
- package/esm/MultiLinearVariantMatrixDisplay/model.js +6 -0
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +2 -2
- package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +11 -9
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +8 -0
- package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +14 -2
- package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +8 -11
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +2 -2
- package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +4 -3
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +4 -0
- package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +23 -2
- package/esm/MultiLinearVariantRenderer/makeImageData.js +12 -12
- package/esm/PlinkLDAdapter/PlinkLDAdapter.d.ts +25 -0
- package/esm/PlinkLDAdapter/PlinkLDAdapter.js +147 -0
- package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.d.ts +24 -0
- package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.js +156 -0
- package/esm/PlinkLDAdapter/configSchema.d.ts +10 -0
- package/esm/PlinkLDAdapter/configSchema.js +25 -0
- package/esm/PlinkLDAdapter/configSchemaTabix.d.ts +24 -0
- package/esm/PlinkLDAdapter/configSchemaTabix.js +46 -0
- package/esm/PlinkLDAdapter/index.d.ts +2 -0
- package/esm/PlinkLDAdapter/index.js +25 -0
- package/esm/PlinkLDAdapter/types.d.ts +29 -0
- package/esm/PlinkLDAdapter/types.js +1 -0
- package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +1 -1
- package/esm/VariantRPC/MultiVariantGetFeatureDetails.d.ts +14 -0
- package/esm/VariantRPC/MultiVariantGetFeatureDetails.js +15 -0
- package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +4 -1
- package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +3 -3
- package/esm/VariantRPC/executeClusterGenotypeMatrix.js +6 -3
- package/esm/VariantRPC/getGenotypeMatrix.d.ts +2 -3
- package/esm/VariantRPC/getGenotypeMatrix.js +4 -5
- package/esm/VariantRPC/getLDMatrix.d.ts +47 -0
- package/esm/VariantRPC/getLDMatrix.js +387 -0
- package/esm/VariantRPC/getLDMatrixFromPlink.d.ts +16 -0
- package/esm/VariantRPC/getLDMatrixFromPlink.js +105 -0
- package/esm/VariantRPC/getPhasedGenotypeMatrix.d.ts +2 -3
- package/esm/VariantRPC/getPhasedGenotypeMatrix.js +4 -5
- package/esm/VariantRPC/types.d.ts +3 -0
- package/esm/VcfAdapter/VcfAdapter.d.ts +1 -1
- package/esm/VcfAdapter/VcfAdapter.js +1 -2
- package/esm/VcfExtensionPoints/index.js +29 -3
- package/esm/VcfFeature/index.d.ts +2 -1
- package/esm/VcfFeature/index.js +4 -2
- package/esm/index.d.ts +1 -0
- package/esm/index.js +23 -0
- package/esm/shared/MultiVariantBaseModel.d.ts +2626 -26
- package/esm/shared/MultiVariantBaseModel.js +88 -39
- package/esm/shared/SharedVariantConfigSchema.d.ts +27 -1
- package/esm/shared/SharedVariantConfigSchema.js +28 -1
- package/esm/shared/VariantFeatureCache.d.ts +27 -0
- package/esm/shared/VariantFeatureCache.js +48 -0
- package/esm/shared/VariantRendererType.d.ts +23 -0
- package/esm/shared/VariantRendererType.js +15 -0
- package/esm/shared/applyColorPalette.d.ts +9 -0
- package/esm/shared/applyColorPalette.js +23 -0
- package/esm/shared/colorByAutorun.d.ts +10 -0
- package/esm/shared/colorByAutorun.js +39 -0
- package/esm/shared/components/AddFiltersDialog.d.ts +3 -3
- package/esm/shared/components/AddFiltersDialog.js +29 -22
- package/esm/shared/components/LDFilterDialog.d.ts +13 -0
- package/esm/shared/components/LDFilterDialog.js +102 -0
- package/esm/shared/components/MAFFilterDialog.js +23 -16
- package/esm/shared/components/RecombinationTrack.d.ts +21 -0
- package/esm/shared/components/RecombinationTrack.js +54 -0
- package/esm/shared/components/RecombinationYScaleBar.d.ts +7 -0
- package/esm/shared/components/RecombinationYScaleBar.js +34 -0
- package/esm/shared/components/SetColorDialogRowPalettizer.d.ts +3 -8
- package/esm/shared/components/SetColorDialogRowPalettizer.js +2 -14
- package/esm/shared/drawAlleleCount.js +9 -0
- package/esm/shared/drawPhased.d.ts +1 -1
- package/esm/shared/drawPhased.js +31 -2
- package/esm/shared/mafFilterUtils.d.ts +5 -0
- package/esm/shared/mafFilterUtils.js +17 -0
- package/esm/shared/minorAlleleFrequencyUtils.d.ts +4 -2
- package/esm/shared/minorAlleleFrequencyUtils.js +261 -19
- package/esm/shared/setupMultiVariantAutoruns.js +2 -0
- package/package.json +11 -10
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@@ -93,14 +93,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
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layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
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configuration: AnyConfigurationSchemaType;
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showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").
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minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
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showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
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showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
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renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
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lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
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referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
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featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
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sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
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colorByApplied: boolean;
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featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
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hasPhased: boolean;
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sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
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hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
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treeCanvas: HTMLCanvasElement | undefined;
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mouseoverCanvas: HTMLCanvasElement | undefined;
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} & {
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readonly renderingMode: string;
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} & {
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setJexlFilters(f?: string[]): void;
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setRowHeight(arg: number | "auto"): void;
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setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
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setTreeAreaWidth(width: number): void;
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setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
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setColorByApplied(value: boolean): void;
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setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
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clearLayout(): void;
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setClusterTree(tree?: string): void;
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setReferenceDrawingMode(arg: string): void;
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} & {
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readonly autoHeight: boolean;
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readonly
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readonly minorAlleleFrequencyFilter: any;
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readonly showSidebarLabels: any;
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readonly showTree: any;
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readonly referenceDrawingMode: string;
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activeFilters(): any;
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readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
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readonly sources: import("../shared/types.ts").Source[] | undefined;
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readonly root: any;
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checked:
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checked: any;
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onClick: () => void;
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disabled?: undefined;
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helpText?: undefined;
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checked: any;
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helpText?: undefined;
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})[];
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} | {
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icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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muiName: string;
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}[];
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subMenu: import("@jbrowse/core/ui").MenuItem[];
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type?: undefined;
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readonly canDisplayLabels: any;
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readonly totalHeight: number;
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readonly featuresReady: boolean;
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getPortableSettings(): {
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showSidebarLabelsSetting: boolean;
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minorAlleleFrequencyFilter: any;
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jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
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displayModel: {
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id: string;
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type: never;
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rpcDriverName: string | undefined;
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heightPreConfig: number | undefined;
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
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region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
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reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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stopToken: import("@jbrowse/core/util").StopToken | undefined;
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filled: boolean;
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reactElement: React.ReactElement | undefined;
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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error: unknown;
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};
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}) => import("react/jsx-runtime").JSX.Element;
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renderArgs: Record<string, unknown> | undefined;
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cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
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} & {
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|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
1322
|
+
setMessage(messageText: string): void;
|
|
1323
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
1324
|
+
setError(error: unknown): void;
|
|
1325
|
+
reload(): void;
|
|
1326
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
1327
|
+
beforeDestroy(): void;
|
|
1328
|
+
} & {
|
|
1329
|
+
readonly statusMessage: any;
|
|
1330
|
+
} & {
|
|
1331
|
+
afterAttach(): void;
|
|
1332
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1333
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1334
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1335
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1336
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1337
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1338
|
+
}, {
|
|
1339
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
1340
|
+
filled: boolean;
|
|
1341
|
+
reactElement: React.ReactElement | undefined;
|
|
1342
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
1343
|
+
layout: any;
|
|
1344
|
+
blockStatusMessage: string;
|
|
1345
|
+
error: unknown;
|
|
1346
|
+
message: string | undefined;
|
|
1347
|
+
maxHeightReached: boolean;
|
|
1348
|
+
ReactComponent: ({ model, }: {
|
|
1349
|
+
model: {
|
|
1350
|
+
error?: unknown;
|
|
1351
|
+
reload: () => void;
|
|
1352
|
+
message?: React.ReactNode;
|
|
1353
|
+
statusMessage?: string;
|
|
1354
|
+
reactElement?: React.ReactElement;
|
|
1355
|
+
isRenderingPending?: boolean;
|
|
1356
|
+
};
|
|
1357
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
1358
|
+
renderProps: any;
|
|
1359
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
1360
|
+
isRenderingPending: boolean;
|
|
1361
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
1362
|
+
} & {
|
|
1363
|
+
doReload(): void;
|
|
1364
|
+
setStatusMessage(message: string): void;
|
|
1365
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
1366
|
+
setMessage(messageText: string): void;
|
|
1367
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
1368
|
+
setError(error: unknown): void;
|
|
1369
|
+
reload(): void;
|
|
1370
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
1371
|
+
beforeDestroy(): void;
|
|
1372
|
+
} & {
|
|
1373
|
+
readonly statusMessage: any;
|
|
1374
|
+
} & {
|
|
1375
|
+
afterAttach(): void;
|
|
1376
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
1377
|
+
configuration: {
|
|
1378
|
+
[x: string]: any;
|
|
1379
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1380
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1381
|
+
[x: string]: any;
|
|
1382
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1383
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1384
|
+
[x: string]: any;
|
|
1385
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
1386
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
1387
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
1388
|
+
maxFeatureScreenDensity: {
|
|
1389
|
+
type: string;
|
|
1390
|
+
description: string;
|
|
1391
|
+
defaultValue: number;
|
|
1392
|
+
};
|
|
1393
|
+
fetchSizeLimit: {
|
|
1394
|
+
type: string;
|
|
1395
|
+
defaultValue: number;
|
|
1396
|
+
description: string;
|
|
1397
|
+
};
|
|
1398
|
+
height: {
|
|
1399
|
+
type: string;
|
|
1400
|
+
defaultValue: number;
|
|
1401
|
+
description: string;
|
|
1402
|
+
};
|
|
1403
|
+
mouseover: {
|
|
1404
|
+
type: string;
|
|
1405
|
+
description: string;
|
|
1406
|
+
defaultValue: string;
|
|
1407
|
+
contextVariable: string[];
|
|
1408
|
+
};
|
|
1409
|
+
jexlFilters: {
|
|
1410
|
+
type: string;
|
|
1411
|
+
description: string;
|
|
1412
|
+
defaultValue: never[];
|
|
1413
|
+
};
|
|
1414
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
|
|
1415
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1416
|
+
[x: string]: any;
|
|
1417
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
1418
|
+
};
|
|
1419
|
+
showLegend: boolean | undefined;
|
|
1420
|
+
showTooltips: boolean | undefined;
|
|
1421
|
+
layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
|
|
1422
|
+
minorAlleleFrequencyFilterSetting: number | undefined;
|
|
1423
|
+
showSidebarLabelsSetting: boolean | undefined;
|
|
1424
|
+
showTreeSetting: boolean | undefined;
|
|
1425
|
+
renderingModeSetting: string | undefined;
|
|
1426
|
+
rowHeightMode: number | "auto";
|
|
1427
|
+
lengthCutoffFilter: number;
|
|
1428
|
+
jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
|
|
1429
|
+
referenceDrawingModeSetting: string | undefined;
|
|
1430
|
+
clusterTree: string | undefined;
|
|
1431
|
+
treeAreaWidth: number;
|
|
1432
|
+
lineZoneHeight: number;
|
|
1433
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1434
|
+
rendererTypeName: string;
|
|
1435
|
+
error: unknown;
|
|
1436
|
+
statusMessage: string | undefined;
|
|
1437
|
+
} & {
|
|
1438
|
+
readonly RenderingComponent: React.FC<{
|
|
1439
|
+
model: {
|
|
1440
|
+
id: string;
|
|
1441
|
+
type: string;
|
|
1442
|
+
rpcDriverName: string | undefined;
|
|
1443
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1444
|
+
rendererTypeName: string;
|
|
1445
|
+
error: unknown;
|
|
1446
|
+
statusMessage: string | undefined;
|
|
1447
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1448
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1449
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1450
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1451
|
+
}, {
|
|
1452
|
+
rendererTypeName: string;
|
|
1453
|
+
error: unknown;
|
|
1454
|
+
statusMessage: string | undefined;
|
|
1455
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1456
|
+
onHorizontalScroll?: () => void;
|
|
1457
|
+
blockState?: Record<string, any>;
|
|
1458
|
+
}>;
|
|
1459
|
+
readonly DisplayBlurb: React.FC<{
|
|
1460
|
+
model: {
|
|
1461
|
+
id: string;
|
|
1462
|
+
type: string;
|
|
1463
|
+
rpcDriverName: string | undefined;
|
|
1464
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1465
|
+
rendererTypeName: string;
|
|
1466
|
+
error: unknown;
|
|
1467
|
+
statusMessage: string | undefined;
|
|
1468
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1469
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1470
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1471
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1472
|
+
}, {
|
|
1473
|
+
rendererTypeName: string;
|
|
1474
|
+
error: unknown;
|
|
1475
|
+
statusMessage: string | undefined;
|
|
1476
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1477
|
+
}> | null;
|
|
1478
|
+
readonly adapterConfig: any;
|
|
1479
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1480
|
+
readonly isMinimized: boolean;
|
|
1481
|
+
readonly parentDisplay: any;
|
|
1482
|
+
readonly effectiveRpcDriverName: any;
|
|
1483
|
+
} & {
|
|
1484
|
+
renderProps(): any;
|
|
1485
|
+
renderingProps(): {
|
|
1486
|
+
displayModel: {
|
|
1487
|
+
id: string;
|
|
1488
|
+
type: string;
|
|
1489
|
+
rpcDriverName: string | undefined;
|
|
1490
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1491
|
+
rendererTypeName: string;
|
|
1492
|
+
error: unknown;
|
|
1493
|
+
statusMessage: string | undefined;
|
|
1494
|
+
} & {
|
|
1495
|
+
readonly RenderingComponent: React.FC<{
|
|
1496
|
+
model: {
|
|
1497
|
+
id: string;
|
|
1498
|
+
type: string;
|
|
1499
|
+
rpcDriverName: string | undefined;
|
|
1500
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1501
|
+
rendererTypeName: string;
|
|
1502
|
+
error: unknown;
|
|
1503
|
+
statusMessage: string | undefined;
|
|
1504
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1505
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1506
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1507
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1508
|
+
}, {
|
|
1509
|
+
rendererTypeName: string;
|
|
1510
|
+
error: unknown;
|
|
1511
|
+
statusMessage: string | undefined;
|
|
1512
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1513
|
+
onHorizontalScroll?: () => void;
|
|
1514
|
+
blockState?: Record<string, any>;
|
|
1515
|
+
}>;
|
|
1516
|
+
readonly DisplayBlurb: React.FC<{
|
|
1517
|
+
model: {
|
|
1518
|
+
id: string;
|
|
1519
|
+
type: string;
|
|
1520
|
+
rpcDriverName: string | undefined;
|
|
1521
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1522
|
+
rendererTypeName: string;
|
|
1523
|
+
error: unknown;
|
|
1524
|
+
statusMessage: string | undefined;
|
|
1525
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1526
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1527
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1528
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1529
|
+
}, {
|
|
1530
|
+
rendererTypeName: string;
|
|
1531
|
+
error: unknown;
|
|
1532
|
+
statusMessage: string | undefined;
|
|
1533
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1534
|
+
}> | null;
|
|
1535
|
+
readonly adapterConfig: any;
|
|
1536
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1537
|
+
readonly isMinimized: boolean;
|
|
1538
|
+
readonly parentDisplay: any;
|
|
1539
|
+
readonly effectiveRpcDriverName: any;
|
|
1540
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1541
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1542
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1543
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1544
|
+
}, {
|
|
1545
|
+
rendererTypeName: string;
|
|
1546
|
+
error: unknown;
|
|
1547
|
+
statusMessage: string | undefined;
|
|
1548
|
+
} & {
|
|
1549
|
+
readonly RenderingComponent: React.FC<{
|
|
1550
|
+
model: {
|
|
1551
|
+
id: string;
|
|
1552
|
+
type: string;
|
|
1553
|
+
rpcDriverName: string | undefined;
|
|
1554
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1555
|
+
rendererTypeName: string;
|
|
1556
|
+
error: unknown;
|
|
1557
|
+
statusMessage: string | undefined;
|
|
1558
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1559
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1560
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1561
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1562
|
+
}, {
|
|
1563
|
+
rendererTypeName: string;
|
|
1564
|
+
error: unknown;
|
|
1565
|
+
statusMessage: string | undefined;
|
|
1566
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1567
|
+
onHorizontalScroll?: () => void;
|
|
1568
|
+
blockState?: Record<string, any>;
|
|
1569
|
+
}>;
|
|
1570
|
+
readonly DisplayBlurb: React.FC<{
|
|
1571
|
+
model: {
|
|
1572
|
+
id: string;
|
|
1573
|
+
type: string;
|
|
1574
|
+
rpcDriverName: string | undefined;
|
|
1575
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1576
|
+
rendererTypeName: string;
|
|
1577
|
+
error: unknown;
|
|
1578
|
+
statusMessage: string | undefined;
|
|
1579
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1580
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1581
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1582
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1583
|
+
}, {
|
|
1584
|
+
rendererTypeName: string;
|
|
1585
|
+
error: unknown;
|
|
1586
|
+
statusMessage: string | undefined;
|
|
1587
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1588
|
+
}> | null;
|
|
1589
|
+
readonly adapterConfig: any;
|
|
1590
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1591
|
+
readonly isMinimized: boolean;
|
|
1592
|
+
readonly parentDisplay: any;
|
|
1593
|
+
readonly effectiveRpcDriverName: any;
|
|
1594
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1595
|
+
};
|
|
1596
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
1597
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
1598
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
1599
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
1600
|
+
regionCannotBeRendered(): null;
|
|
1601
|
+
} & {
|
|
1602
|
+
setStatusMessage(arg?: string): void;
|
|
1603
|
+
setError(error?: unknown): void;
|
|
1604
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
1605
|
+
reload(): void;
|
|
1606
|
+
} & {
|
|
1607
|
+
scrollTop: number;
|
|
1608
|
+
} & {
|
|
1609
|
+
readonly height: number;
|
|
1610
|
+
} & {
|
|
1611
|
+
setScrollTop(scrollTop: number): void;
|
|
1612
|
+
setHeight(displayHeight: number): number;
|
|
1613
|
+
resizeHeight(distance: number): number;
|
|
1614
|
+
} & {
|
|
1615
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1616
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
1617
|
+
currStatsBpPerPx: number;
|
|
1618
|
+
} & {
|
|
1619
|
+
readonly currentBytesRequested: number;
|
|
1620
|
+
readonly currentFeatureScreenDensity: number;
|
|
1621
|
+
readonly maxFeatureScreenDensity: any;
|
|
1622
|
+
readonly featureDensityStatsReady: boolean;
|
|
1623
|
+
readonly maxAllowableBytes: number;
|
|
1624
|
+
} & {
|
|
1625
|
+
afterAttach(): void;
|
|
1626
|
+
} & {
|
|
1627
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
1628
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1629
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
1630
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
1631
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
1632
|
+
clearFeatureDensityStats(): void;
|
|
1633
|
+
} & {
|
|
1634
|
+
readonly regionTooLarge: boolean;
|
|
1635
|
+
readonly regionTooLargeReason: string;
|
|
1636
|
+
} & {
|
|
1637
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
1638
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
1639
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
1640
|
+
} & {
|
|
1641
|
+
mouseoverExtraInformation: string | undefined;
|
|
1642
|
+
featureIdUnderMouse: undefined | string;
|
|
1643
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
1644
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
1645
|
+
} & {
|
|
1646
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
1647
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
1648
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
1649
|
+
} & {
|
|
1650
|
+
readonly renderDelay: number;
|
|
1651
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
1652
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
1653
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
1654
|
+
readonly selectedFeatureId: string | undefined;
|
|
1655
|
+
readonly featureWidgetType: {
|
|
1656
|
+
type: string;
|
|
1657
|
+
id: string;
|
|
1658
|
+
};
|
|
1659
|
+
} & {
|
|
1660
|
+
readonly showTooltipsEnabled: boolean;
|
|
1661
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
1662
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
1663
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
1664
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
1665
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
1666
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
1667
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
1668
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
1669
|
+
} & {
|
|
1670
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
1671
|
+
deleteBlock(key: string): void;
|
|
1672
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
1673
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
1674
|
+
clearFeatureSelection(): void;
|
|
1675
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
1676
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
1677
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
1678
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
1679
|
+
setShowLegend(s: boolean): void;
|
|
1680
|
+
setShowTooltips(arg: boolean): void;
|
|
1681
|
+
} & {
|
|
1682
|
+
reload(): Promise<void>;
|
|
1683
|
+
} & {
|
|
1684
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1685
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
1686
|
+
} & {
|
|
1687
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
1688
|
+
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
1689
|
+
renderingProps(): {
|
|
1690
|
+
displayModel: {
|
|
1691
|
+
id: string;
|
|
1692
|
+
type: string;
|
|
1693
|
+
rpcDriverName: string | undefined;
|
|
1694
|
+
heightPreConfig: number | undefined;
|
|
1695
|
+
userBpPerPxLimit: number | undefined;
|
|
1696
|
+
userByteSizeLimit: number | undefined;
|
|
1697
|
+
blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1698
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1699
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1700
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1701
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1702
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1703
|
+
}, {
|
|
1704
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
1705
|
+
filled: boolean;
|
|
1706
|
+
reactElement: React.ReactElement | undefined;
|
|
1707
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
1708
|
+
layout: any;
|
|
1709
|
+
blockStatusMessage: string;
|
|
1710
|
+
error: unknown;
|
|
1711
|
+
message: string | undefined;
|
|
1712
|
+
maxHeightReached: boolean;
|
|
1713
|
+
ReactComponent: ({ model, }: {
|
|
1714
|
+
model: {
|
|
1715
|
+
error?: unknown;
|
|
1716
|
+
reload: () => void;
|
|
1717
|
+
message?: React.ReactNode;
|
|
1718
|
+
statusMessage?: string;
|
|
1719
|
+
reactElement?: React.ReactElement;
|
|
1720
|
+
isRenderingPending?: boolean;
|
|
1721
|
+
};
|
|
1722
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
1723
|
+
renderProps: any;
|
|
1724
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
1725
|
+
isRenderingPending: boolean;
|
|
1726
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
1727
|
+
} & {
|
|
1728
|
+
doReload(): void;
|
|
1729
|
+
setStatusMessage(message: string): void;
|
|
1730
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
1731
|
+
setMessage(messageText: string): void;
|
|
1732
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
1733
|
+
setError(error: unknown): void;
|
|
1734
|
+
reload(): void;
|
|
1735
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
1736
|
+
beforeDestroy(): void;
|
|
1737
|
+
} & {
|
|
1738
|
+
readonly statusMessage: any;
|
|
1739
|
+
} & {
|
|
1740
|
+
afterAttach(): void;
|
|
1741
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1742
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1743
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
1744
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
1745
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1746
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
1747
|
+
}, {
|
|
1748
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
1749
|
+
filled: boolean;
|
|
1750
|
+
reactElement: React.ReactElement | undefined;
|
|
1751
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
1752
|
+
layout: any;
|
|
1753
|
+
blockStatusMessage: string;
|
|
1754
|
+
error: unknown;
|
|
1755
|
+
message: string | undefined;
|
|
1756
|
+
maxHeightReached: boolean;
|
|
1757
|
+
ReactComponent: ({ model, }: {
|
|
1758
|
+
model: {
|
|
1759
|
+
error?: unknown;
|
|
1760
|
+
reload: () => void;
|
|
1761
|
+
message?: React.ReactNode;
|
|
1762
|
+
statusMessage?: string;
|
|
1763
|
+
reactElement?: React.ReactElement;
|
|
1764
|
+
isRenderingPending?: boolean;
|
|
1765
|
+
};
|
|
1766
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
1767
|
+
renderProps: any;
|
|
1768
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
1769
|
+
isRenderingPending: boolean;
|
|
1770
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
1771
|
+
} & {
|
|
1772
|
+
doReload(): void;
|
|
1773
|
+
setStatusMessage(message: string): void;
|
|
1774
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
1775
|
+
setMessage(messageText: string): void;
|
|
1776
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
1777
|
+
setError(error: unknown): void;
|
|
1778
|
+
reload(): void;
|
|
1779
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
1780
|
+
beforeDestroy(): void;
|
|
1781
|
+
} & {
|
|
1782
|
+
readonly statusMessage: any;
|
|
1783
|
+
} & {
|
|
1784
|
+
afterAttach(): void;
|
|
1785
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
1786
|
+
configuration: {
|
|
1787
|
+
[x: string]: any;
|
|
1788
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1789
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1790
|
+
[x: string]: any;
|
|
1791
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1792
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1793
|
+
[x: string]: any;
|
|
1794
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
1795
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
1796
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
1797
|
+
maxFeatureScreenDensity: {
|
|
1798
|
+
type: string;
|
|
1799
|
+
description: string;
|
|
1800
|
+
defaultValue: number;
|
|
1801
|
+
};
|
|
1802
|
+
fetchSizeLimit: {
|
|
1803
|
+
type: string;
|
|
1804
|
+
defaultValue: number;
|
|
1805
|
+
description: string;
|
|
1806
|
+
};
|
|
1807
|
+
height: {
|
|
1808
|
+
type: string;
|
|
1809
|
+
defaultValue: number;
|
|
1810
|
+
description: string;
|
|
1811
|
+
};
|
|
1812
|
+
mouseover: {
|
|
1813
|
+
type: string;
|
|
1814
|
+
description: string;
|
|
1815
|
+
defaultValue: string;
|
|
1816
|
+
contextVariable: string[];
|
|
1817
|
+
};
|
|
1818
|
+
jexlFilters: {
|
|
1819
|
+
type: string;
|
|
1820
|
+
description: string;
|
|
1821
|
+
defaultValue: never[];
|
|
1822
|
+
};
|
|
1823
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
|
|
1824
|
+
showLegend: boolean | undefined;
|
|
1825
|
+
showTooltips: boolean | undefined;
|
|
1826
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1827
|
+
rendererTypeName: string;
|
|
1828
|
+
error: unknown;
|
|
1829
|
+
statusMessage: string | undefined;
|
|
1830
|
+
} & {
|
|
1831
|
+
readonly RenderingComponent: React.FC<{
|
|
1832
|
+
model: {
|
|
1833
|
+
id: string;
|
|
1834
|
+
type: string;
|
|
1835
|
+
rpcDriverName: string | undefined;
|
|
1836
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1837
|
+
rendererTypeName: string;
|
|
1838
|
+
error: unknown;
|
|
1839
|
+
statusMessage: string | undefined;
|
|
1840
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1841
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1842
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1843
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1844
|
+
}, {
|
|
1845
|
+
rendererTypeName: string;
|
|
1846
|
+
error: unknown;
|
|
1847
|
+
statusMessage: string | undefined;
|
|
1848
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1849
|
+
onHorizontalScroll?: () => void;
|
|
1850
|
+
blockState?: Record<string, any>;
|
|
1851
|
+
}>;
|
|
1852
|
+
readonly DisplayBlurb: React.FC<{
|
|
1853
|
+
model: {
|
|
1854
|
+
id: string;
|
|
1855
|
+
type: string;
|
|
1856
|
+
rpcDriverName: string | undefined;
|
|
1857
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1858
|
+
rendererTypeName: string;
|
|
1859
|
+
error: unknown;
|
|
1860
|
+
statusMessage: string | undefined;
|
|
1861
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1862
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1863
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1864
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1865
|
+
}, {
|
|
1866
|
+
rendererTypeName: string;
|
|
1867
|
+
error: unknown;
|
|
1868
|
+
statusMessage: string | undefined;
|
|
1869
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1870
|
+
}> | null;
|
|
1871
|
+
readonly adapterConfig: any;
|
|
1872
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1873
|
+
readonly isMinimized: boolean;
|
|
1874
|
+
readonly parentDisplay: any;
|
|
1875
|
+
readonly effectiveRpcDriverName: any;
|
|
1876
|
+
} & {
|
|
1877
|
+
renderProps(): any;
|
|
1878
|
+
renderingProps(): {
|
|
1879
|
+
displayModel: {
|
|
1880
|
+
id: string;
|
|
1881
|
+
type: string;
|
|
1882
|
+
rpcDriverName: string | undefined;
|
|
1883
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1884
|
+
rendererTypeName: string;
|
|
1885
|
+
error: unknown;
|
|
1886
|
+
statusMessage: string | undefined;
|
|
1887
|
+
} & {
|
|
1888
|
+
readonly RenderingComponent: React.FC<{
|
|
1889
|
+
model: {
|
|
1890
|
+
id: string;
|
|
1891
|
+
type: string;
|
|
1892
|
+
rpcDriverName: string | undefined;
|
|
1893
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1894
|
+
rendererTypeName: string;
|
|
1895
|
+
error: unknown;
|
|
1896
|
+
statusMessage: string | undefined;
|
|
1897
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1898
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1899
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1900
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1901
|
+
}, {
|
|
1902
|
+
rendererTypeName: string;
|
|
1903
|
+
error: unknown;
|
|
1904
|
+
statusMessage: string | undefined;
|
|
1905
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1906
|
+
onHorizontalScroll?: () => void;
|
|
1907
|
+
blockState?: Record<string, any>;
|
|
1908
|
+
}>;
|
|
1909
|
+
readonly DisplayBlurb: React.FC<{
|
|
1910
|
+
model: {
|
|
1911
|
+
id: string;
|
|
1912
|
+
type: string;
|
|
1913
|
+
rpcDriverName: string | undefined;
|
|
1914
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1915
|
+
rendererTypeName: string;
|
|
1916
|
+
error: unknown;
|
|
1917
|
+
statusMessage: string | undefined;
|
|
1918
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1919
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1920
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1921
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1922
|
+
}, {
|
|
1923
|
+
rendererTypeName: string;
|
|
1924
|
+
error: unknown;
|
|
1925
|
+
statusMessage: string | undefined;
|
|
1926
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1927
|
+
}> | null;
|
|
1928
|
+
readonly adapterConfig: any;
|
|
1929
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1930
|
+
readonly isMinimized: boolean;
|
|
1931
|
+
readonly parentDisplay: any;
|
|
1932
|
+
readonly effectiveRpcDriverName: any;
|
|
1933
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1934
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1935
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1936
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1937
|
+
}, {
|
|
1938
|
+
rendererTypeName: string;
|
|
1939
|
+
error: unknown;
|
|
1940
|
+
statusMessage: string | undefined;
|
|
1941
|
+
} & {
|
|
1942
|
+
readonly RenderingComponent: React.FC<{
|
|
1943
|
+
model: {
|
|
1944
|
+
id: string;
|
|
1945
|
+
type: string;
|
|
1946
|
+
rpcDriverName: string | undefined;
|
|
1947
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1948
|
+
rendererTypeName: string;
|
|
1949
|
+
error: unknown;
|
|
1950
|
+
statusMessage: string | undefined;
|
|
1951
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1952
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1953
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1954
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1955
|
+
}, {
|
|
1956
|
+
rendererTypeName: string;
|
|
1957
|
+
error: unknown;
|
|
1958
|
+
statusMessage: string | undefined;
|
|
1959
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1960
|
+
onHorizontalScroll?: () => void;
|
|
1961
|
+
blockState?: Record<string, any>;
|
|
1962
|
+
}>;
|
|
1963
|
+
readonly DisplayBlurb: React.FC<{
|
|
1964
|
+
model: {
|
|
1965
|
+
id: string;
|
|
1966
|
+
type: string;
|
|
1967
|
+
rpcDriverName: string | undefined;
|
|
1968
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1969
|
+
rendererTypeName: string;
|
|
1970
|
+
error: unknown;
|
|
1971
|
+
statusMessage: string | undefined;
|
|
1972
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1973
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1974
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
1975
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1976
|
+
}, {
|
|
1977
|
+
rendererTypeName: string;
|
|
1978
|
+
error: unknown;
|
|
1979
|
+
statusMessage: string | undefined;
|
|
1980
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1981
|
+
}> | null;
|
|
1982
|
+
readonly adapterConfig: any;
|
|
1983
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
1984
|
+
readonly isMinimized: boolean;
|
|
1985
|
+
readonly parentDisplay: any;
|
|
1986
|
+
readonly effectiveRpcDriverName: any;
|
|
1987
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1988
|
+
};
|
|
1989
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
1990
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
1991
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
1992
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
1993
|
+
regionCannotBeRendered(): null;
|
|
1994
|
+
} & {
|
|
1995
|
+
setStatusMessage(arg?: string): void;
|
|
1996
|
+
setError(error?: unknown): void;
|
|
1997
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
1998
|
+
reload(): void;
|
|
1999
|
+
} & {
|
|
2000
|
+
scrollTop: number;
|
|
2001
|
+
} & {
|
|
2002
|
+
readonly height: number;
|
|
2003
|
+
} & {
|
|
2004
|
+
setScrollTop(scrollTop: number): void;
|
|
2005
|
+
setHeight(displayHeight: number): number;
|
|
2006
|
+
resizeHeight(distance: number): number;
|
|
2007
|
+
} & {
|
|
2008
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2009
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
2010
|
+
currStatsBpPerPx: number;
|
|
2011
|
+
} & {
|
|
2012
|
+
readonly currentBytesRequested: number;
|
|
2013
|
+
readonly currentFeatureScreenDensity: number;
|
|
2014
|
+
readonly maxFeatureScreenDensity: any;
|
|
2015
|
+
readonly featureDensityStatsReady: boolean;
|
|
2016
|
+
readonly maxAllowableBytes: number;
|
|
2017
|
+
} & {
|
|
2018
|
+
afterAttach(): void;
|
|
2019
|
+
} & {
|
|
2020
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
2021
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2022
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2023
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
2024
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2025
|
+
clearFeatureDensityStats(): void;
|
|
2026
|
+
} & {
|
|
2027
|
+
readonly regionTooLarge: boolean;
|
|
2028
|
+
readonly regionTooLargeReason: string;
|
|
2029
|
+
} & {
|
|
2030
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
2031
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
2032
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
2033
|
+
} & {
|
|
2034
|
+
mouseoverExtraInformation: string | undefined;
|
|
2035
|
+
featureIdUnderMouse: undefined | string;
|
|
2036
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
2037
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
2038
|
+
} & {
|
|
2039
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
2040
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
2041
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
2042
|
+
} & {
|
|
2043
|
+
readonly renderDelay: number;
|
|
2044
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
2045
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
2046
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
2047
|
+
readonly selectedFeatureId: string | undefined;
|
|
2048
|
+
readonly featureWidgetType: {
|
|
2049
|
+
type: string;
|
|
2050
|
+
id: string;
|
|
2051
|
+
};
|
|
2052
|
+
} & {
|
|
2053
|
+
readonly showTooltipsEnabled: boolean;
|
|
2054
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
2055
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
2056
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
2057
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
2058
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
2059
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2060
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2061
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
2062
|
+
} & {
|
|
2063
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
2064
|
+
deleteBlock(key: string): void;
|
|
2065
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2066
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2067
|
+
clearFeatureSelection(): void;
|
|
2068
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
2069
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
2070
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
2071
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
2072
|
+
setShowLegend(s: boolean): void;
|
|
2073
|
+
setShowTooltips(arg: boolean): void;
|
|
2074
|
+
} & {
|
|
2075
|
+
reload(): Promise<void>;
|
|
2076
|
+
} & {
|
|
2077
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2078
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2079
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2080
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2081
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2082
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2083
|
+
} & {
|
|
2084
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2085
|
+
} & {
|
|
2086
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2087
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2088
|
+
} & {
|
|
2089
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2090
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2091
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
2092
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
2093
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2094
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2095
|
+
}, {
|
|
2096
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
2097
|
+
filled: boolean;
|
|
2098
|
+
reactElement: React.ReactElement | undefined;
|
|
2099
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
2100
|
+
layout: any;
|
|
2101
|
+
blockStatusMessage: string;
|
|
2102
|
+
error: unknown;
|
|
2103
|
+
message: string | undefined;
|
|
2104
|
+
maxHeightReached: boolean;
|
|
2105
|
+
ReactComponent: ({ model, }: {
|
|
2106
|
+
model: {
|
|
2107
|
+
error?: unknown;
|
|
2108
|
+
reload: () => void;
|
|
2109
|
+
message?: React.ReactNode;
|
|
2110
|
+
statusMessage?: string;
|
|
2111
|
+
reactElement?: React.ReactElement;
|
|
2112
|
+
isRenderingPending?: boolean;
|
|
2113
|
+
};
|
|
2114
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
2115
|
+
renderProps: any;
|
|
2116
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
2117
|
+
isRenderingPending: boolean;
|
|
2118
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
2119
|
+
} & {
|
|
2120
|
+
doReload(): void;
|
|
2121
|
+
setStatusMessage(message: string): void;
|
|
2122
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
2123
|
+
setMessage(messageText: string): void;
|
|
2124
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
2125
|
+
setError(error: unknown): void;
|
|
2126
|
+
reload(): void;
|
|
2127
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
2128
|
+
beforeDestroy(): void;
|
|
2129
|
+
} & {
|
|
2130
|
+
readonly statusMessage: any;
|
|
2131
|
+
} & {
|
|
2132
|
+
afterAttach(): void;
|
|
2133
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2134
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
2135
|
+
maxFeatureScreenDensity: {
|
|
2136
|
+
type: string;
|
|
2137
|
+
description: string;
|
|
2138
|
+
defaultValue: number;
|
|
2139
|
+
};
|
|
2140
|
+
fetchSizeLimit: {
|
|
2141
|
+
type: string;
|
|
2142
|
+
defaultValue: number;
|
|
2143
|
+
description: string;
|
|
2144
|
+
};
|
|
2145
|
+
height: {
|
|
2146
|
+
type: string;
|
|
2147
|
+
defaultValue: number;
|
|
2148
|
+
description: string;
|
|
2149
|
+
};
|
|
2150
|
+
mouseover: {
|
|
2151
|
+
type: string;
|
|
2152
|
+
description: string;
|
|
2153
|
+
defaultValue: string;
|
|
2154
|
+
contextVariable: string[];
|
|
2155
|
+
};
|
|
2156
|
+
jexlFilters: {
|
|
2157
|
+
type: string;
|
|
2158
|
+
description: string;
|
|
2159
|
+
defaultValue: never[];
|
|
2160
|
+
};
|
|
2161
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
2162
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2163
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2164
|
+
}, {
|
|
2165
|
+
rendererTypeName: string;
|
|
2166
|
+
error: unknown;
|
|
2167
|
+
statusMessage: string | undefined;
|
|
2168
|
+
} & {
|
|
2169
|
+
readonly RenderingComponent: React.FC<{
|
|
2170
|
+
model: {
|
|
2171
|
+
id: string;
|
|
2172
|
+
type: string;
|
|
2173
|
+
rpcDriverName: string | undefined;
|
|
2174
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2175
|
+
rendererTypeName: string;
|
|
2176
|
+
error: unknown;
|
|
2177
|
+
statusMessage: string | undefined;
|
|
2178
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2179
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2180
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2181
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2182
|
+
}, {
|
|
2183
|
+
rendererTypeName: string;
|
|
2184
|
+
error: unknown;
|
|
2185
|
+
statusMessage: string | undefined;
|
|
2186
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2187
|
+
onHorizontalScroll?: () => void;
|
|
2188
|
+
blockState?: Record<string, any>;
|
|
2189
|
+
}>;
|
|
2190
|
+
readonly DisplayBlurb: React.FC<{
|
|
2191
|
+
model: {
|
|
2192
|
+
id: string;
|
|
2193
|
+
type: string;
|
|
2194
|
+
rpcDriverName: string | undefined;
|
|
2195
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2196
|
+
rendererTypeName: string;
|
|
2197
|
+
error: unknown;
|
|
2198
|
+
statusMessage: string | undefined;
|
|
2199
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2200
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2201
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2202
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2203
|
+
}, {
|
|
2204
|
+
rendererTypeName: string;
|
|
2205
|
+
error: unknown;
|
|
2206
|
+
statusMessage: string | undefined;
|
|
2207
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2208
|
+
}> | null;
|
|
2209
|
+
readonly adapterConfig: any;
|
|
2210
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2211
|
+
readonly isMinimized: boolean;
|
|
2212
|
+
readonly parentDisplay: any;
|
|
2213
|
+
readonly effectiveRpcDriverName: any;
|
|
2214
|
+
} & {
|
|
2215
|
+
renderProps(): any;
|
|
2216
|
+
renderingProps(): {
|
|
2217
|
+
displayModel: {
|
|
2218
|
+
id: string;
|
|
2219
|
+
type: string;
|
|
2220
|
+
rpcDriverName: string | undefined;
|
|
2221
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2222
|
+
rendererTypeName: string;
|
|
2223
|
+
error: unknown;
|
|
2224
|
+
statusMessage: string | undefined;
|
|
2225
|
+
} & {
|
|
2226
|
+
readonly RenderingComponent: React.FC<{
|
|
2227
|
+
model: {
|
|
2228
|
+
id: string;
|
|
2229
|
+
type: string;
|
|
2230
|
+
rpcDriverName: string | undefined;
|
|
2231
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2232
|
+
rendererTypeName: string;
|
|
2233
|
+
error: unknown;
|
|
2234
|
+
statusMessage: string | undefined;
|
|
2235
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2236
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2237
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2238
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2239
|
+
}, {
|
|
2240
|
+
rendererTypeName: string;
|
|
2241
|
+
error: unknown;
|
|
2242
|
+
statusMessage: string | undefined;
|
|
2243
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2244
|
+
onHorizontalScroll?: () => void;
|
|
2245
|
+
blockState?: Record<string, any>;
|
|
2246
|
+
}>;
|
|
2247
|
+
readonly DisplayBlurb: React.FC<{
|
|
2248
|
+
model: {
|
|
2249
|
+
id: string;
|
|
2250
|
+
type: string;
|
|
2251
|
+
rpcDriverName: string | undefined;
|
|
2252
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2253
|
+
rendererTypeName: string;
|
|
2254
|
+
error: unknown;
|
|
2255
|
+
statusMessage: string | undefined;
|
|
2256
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2257
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2258
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2259
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2260
|
+
}, {
|
|
2261
|
+
rendererTypeName: string;
|
|
2262
|
+
error: unknown;
|
|
2263
|
+
statusMessage: string | undefined;
|
|
2264
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2265
|
+
}> | null;
|
|
2266
|
+
readonly adapterConfig: any;
|
|
2267
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2268
|
+
readonly isMinimized: boolean;
|
|
2269
|
+
readonly parentDisplay: any;
|
|
2270
|
+
readonly effectiveRpcDriverName: any;
|
|
2271
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2272
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2273
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2274
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2275
|
+
}, {
|
|
2276
|
+
rendererTypeName: string;
|
|
2277
|
+
error: unknown;
|
|
2278
|
+
statusMessage: string | undefined;
|
|
2279
|
+
} & {
|
|
2280
|
+
readonly RenderingComponent: React.FC<{
|
|
2281
|
+
model: {
|
|
2282
|
+
id: string;
|
|
2283
|
+
type: string;
|
|
2284
|
+
rpcDriverName: string | undefined;
|
|
2285
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2286
|
+
rendererTypeName: string;
|
|
2287
|
+
error: unknown;
|
|
2288
|
+
statusMessage: string | undefined;
|
|
2289
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2290
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2291
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2292
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2293
|
+
}, {
|
|
2294
|
+
rendererTypeName: string;
|
|
2295
|
+
error: unknown;
|
|
2296
|
+
statusMessage: string | undefined;
|
|
2297
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2298
|
+
onHorizontalScroll?: () => void;
|
|
2299
|
+
blockState?: Record<string, any>;
|
|
2300
|
+
}>;
|
|
2301
|
+
readonly DisplayBlurb: React.FC<{
|
|
2302
|
+
model: {
|
|
2303
|
+
id: string;
|
|
2304
|
+
type: string;
|
|
2305
|
+
rpcDriverName: string | undefined;
|
|
2306
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2307
|
+
rendererTypeName: string;
|
|
2308
|
+
error: unknown;
|
|
2309
|
+
statusMessage: string | undefined;
|
|
2310
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2311
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2312
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2313
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2314
|
+
}, {
|
|
2315
|
+
rendererTypeName: string;
|
|
2316
|
+
error: unknown;
|
|
2317
|
+
statusMessage: string | undefined;
|
|
2318
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2319
|
+
}> | null;
|
|
2320
|
+
readonly adapterConfig: any;
|
|
2321
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2322
|
+
readonly isMinimized: boolean;
|
|
2323
|
+
readonly parentDisplay: any;
|
|
2324
|
+
readonly effectiveRpcDriverName: any;
|
|
2325
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2326
|
+
};
|
|
2327
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
2328
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
2329
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2330
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
2331
|
+
regionCannotBeRendered(): null;
|
|
2332
|
+
} & {
|
|
2333
|
+
setStatusMessage(arg?: string): void;
|
|
2334
|
+
setError(error?: unknown): void;
|
|
2335
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
2336
|
+
reload(): void;
|
|
2337
|
+
} & {
|
|
2338
|
+
scrollTop: number;
|
|
2339
|
+
} & {
|
|
2340
|
+
readonly height: number;
|
|
2341
|
+
} & {
|
|
2342
|
+
setScrollTop(scrollTop: number): void;
|
|
2343
|
+
setHeight(displayHeight: number): number;
|
|
2344
|
+
resizeHeight(distance: number): number;
|
|
2345
|
+
} & {
|
|
2346
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2347
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
2348
|
+
currStatsBpPerPx: number;
|
|
2349
|
+
} & {
|
|
2350
|
+
readonly currentBytesRequested: number;
|
|
2351
|
+
readonly currentFeatureScreenDensity: number;
|
|
2352
|
+
readonly maxFeatureScreenDensity: any;
|
|
2353
|
+
readonly featureDensityStatsReady: boolean;
|
|
2354
|
+
readonly maxAllowableBytes: number;
|
|
2355
|
+
} & {
|
|
2356
|
+
afterAttach(): void;
|
|
2357
|
+
} & {
|
|
2358
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
2359
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2360
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2361
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
2362
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2363
|
+
clearFeatureDensityStats(): void;
|
|
2364
|
+
} & {
|
|
2365
|
+
readonly regionTooLarge: boolean;
|
|
2366
|
+
readonly regionTooLargeReason: string;
|
|
2367
|
+
} & {
|
|
2368
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
2369
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
2370
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
2371
|
+
} & {
|
|
2372
|
+
mouseoverExtraInformation: string | undefined;
|
|
2373
|
+
featureIdUnderMouse: undefined | string;
|
|
2374
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
2375
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
2376
|
+
} & {
|
|
2377
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
2378
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
2379
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
2380
|
+
} & {
|
|
2381
|
+
readonly renderDelay: number;
|
|
2382
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
2383
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
2384
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
2385
|
+
readonly selectedFeatureId: string | undefined;
|
|
2386
|
+
readonly featureWidgetType: {
|
|
2387
|
+
type: string;
|
|
2388
|
+
id: string;
|
|
2389
|
+
};
|
|
2390
|
+
} & {
|
|
2391
|
+
readonly showTooltipsEnabled: boolean;
|
|
2392
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
2393
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
2394
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
2395
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
2396
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
2397
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2398
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2399
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
2400
|
+
} & {
|
|
2401
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
2402
|
+
deleteBlock(key: string): void;
|
|
2403
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2404
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2405
|
+
clearFeatureSelection(): void;
|
|
2406
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
2407
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
2408
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
2409
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
2410
|
+
setShowLegend(s: boolean): void;
|
|
2411
|
+
setShowTooltips(arg: boolean): void;
|
|
2412
|
+
} & {
|
|
2413
|
+
reload(): Promise<void>;
|
|
2414
|
+
} & {
|
|
2415
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2416
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2417
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2418
|
+
onMouseMove(_: unknown, featureId?: string): void;
|
|
2419
|
+
onMouseLeave(_: unknown): void;
|
|
2420
|
+
onContextMenu(_: unknown): void;
|
|
2421
|
+
};
|
|
2422
|
+
renderProps(): any;
|
|
2423
|
+
} & {
|
|
2424
|
+
renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
2425
|
+
afterAttach(): void;
|
|
2426
|
+
} & {
|
|
2427
|
+
readonly rendererConfig: Omit<any, symbol>;
|
|
2428
|
+
readonly rendererTypeName: any;
|
|
2429
|
+
} & {
|
|
2430
|
+
renderProps(): any;
|
|
2431
|
+
} & {
|
|
2432
|
+
sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
2433
|
+
simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
2434
|
+
featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
|
|
2435
|
+
sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
|
|
2436
|
+
colorByApplied: boolean;
|
|
2437
|
+
featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2438
|
+
hasPhased: boolean;
|
|
2439
|
+
sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
|
|
2440
|
+
hoveredGenotype: {
|
|
2441
|
+
genotype: string;
|
|
2442
|
+
name: string;
|
|
2443
|
+
} | undefined;
|
|
2444
|
+
hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
|
|
2445
|
+
treeCanvas: HTMLCanvasElement | undefined;
|
|
2446
|
+
mouseoverCanvas: HTMLCanvasElement | undefined;
|
|
2447
|
+
} & {
|
|
2448
|
+
readonly renderingMode: string;
|
|
2449
|
+
} & {
|
|
2450
|
+
setJexlFilters(f?: string[]): void;
|
|
2451
|
+
setRowHeight(arg: number | "auto"): void;
|
|
2452
|
+
setHoveredGenotype(arg?: {
|
|
2453
|
+
genotype: string;
|
|
2454
|
+
name: string;
|
|
2455
|
+
}): void;
|
|
2456
|
+
setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
|
|
2457
|
+
setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
|
|
2458
|
+
setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
|
|
2459
|
+
setTreeAreaWidth(width: number): void;
|
|
2460
|
+
setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
|
|
2461
|
+
setColorByApplied(value: boolean): void;
|
|
2462
|
+
setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
|
|
2463
|
+
clearLayout(): void;
|
|
2464
|
+
setClusterTree(tree?: string): void;
|
|
2465
|
+
setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
|
|
2466
|
+
setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
|
|
2467
|
+
setSources(sources: import("../shared/types.ts").Source[]): void;
|
|
2468
|
+
setMafFilter(arg: number): void;
|
|
2469
|
+
setShowSidebarLabels(arg: boolean): void;
|
|
2470
|
+
setShowTree(arg: boolean): void;
|
|
2471
|
+
setPhasedMode(arg: string): void;
|
|
2472
|
+
setAutoHeight(auto: boolean): void;
|
|
2473
|
+
setHasPhased(arg: boolean): void;
|
|
2474
|
+
setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
|
|
2475
|
+
setReferenceDrawingMode(arg: string): void;
|
|
2476
|
+
} & {
|
|
2477
|
+
readonly autoHeight: boolean;
|
|
2478
|
+
readonly minorAlleleFrequencyFilter: any;
|
|
2479
|
+
readonly showSidebarLabels: any;
|
|
2480
|
+
readonly showTree: any;
|
|
2481
|
+
readonly referenceDrawingMode: string;
|
|
2482
|
+
activeFilters(): any;
|
|
2483
|
+
readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
|
|
2484
|
+
readonly sources: import("../shared/types.ts").Source[] | undefined;
|
|
2485
|
+
readonly root: any;
|
|
2486
|
+
} & {
|
|
2487
|
+
readonly sourceMap: {
|
|
2488
|
+
[k: string]: import("../shared/types.ts").Source;
|
|
2489
|
+
} | undefined;
|
|
2490
|
+
readonly availableHeight: number;
|
|
2491
|
+
readonly nrow: number;
|
|
2492
|
+
readonly rowHeight: number;
|
|
2493
|
+
readonly hierarchy: any;
|
|
2494
|
+
adapterProps(): any;
|
|
2495
|
+
} & {
|
|
2496
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
2497
|
+
label: string;
|
|
2498
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
2499
|
+
muiName: string;
|
|
2500
|
+
};
|
|
2501
|
+
type: string;
|
|
2502
|
+
subMenu: ({
|
|
2503
|
+
label: string;
|
|
2504
|
+
type: string;
|
|
2505
|
+
checked: any;
|
|
2506
|
+
onClick: () => void;
|
|
2507
|
+
disabled?: undefined;
|
|
2508
|
+
helpText?: undefined;
|
|
2509
|
+
} | {
|
|
2510
|
+
label: string;
|
|
2511
|
+
type: string;
|
|
2512
|
+
checked: any;
|
|
2513
|
+
disabled: boolean;
|
|
2514
|
+
onClick: () => void;
|
|
2515
|
+
helpText?: undefined;
|
|
2516
|
+
} | {
|
|
2517
|
+
label: string;
|
|
2518
|
+
helpText: string;
|
|
2519
|
+
type: string;
|
|
2520
|
+
checked: boolean;
|
|
2521
|
+
onClick: () => void;
|
|
2522
|
+
disabled?: undefined;
|
|
2523
|
+
})[];
|
|
2524
|
+
onClick?: undefined;
|
|
2525
|
+
} | {
|
|
2526
|
+
label: string;
|
|
2527
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
2528
|
+
muiName: string;
|
|
2529
|
+
};
|
|
2530
|
+
subMenu: ({
|
|
2531
|
+
label: string;
|
|
2532
|
+
disabled: boolean;
|
|
2533
|
+
onClick: () => void;
|
|
2534
|
+
type?: undefined;
|
|
2535
|
+
checked?: undefined;
|
|
2536
|
+
} | {
|
|
2537
|
+
label: string;
|
|
2538
|
+
type: string;
|
|
2539
|
+
checked: boolean;
|
|
2540
|
+
onClick: () => void;
|
|
2541
|
+
disabled?: undefined;
|
|
2542
|
+
})[];
|
|
2543
|
+
type?: undefined;
|
|
2544
|
+
onClick?: undefined;
|
|
2545
|
+
} | {
|
|
2546
|
+
label: string;
|
|
2547
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
2548
|
+
muiName: string;
|
|
2549
|
+
};
|
|
2550
|
+
subMenu: ({
|
|
2551
|
+
label: string;
|
|
2552
|
+
helpText: string;
|
|
2553
|
+
type: string;
|
|
2554
|
+
checked: boolean;
|
|
2555
|
+
onClick: () => void;
|
|
2556
|
+
disabled?: undefined;
|
|
2557
|
+
} | {
|
|
2558
|
+
label: string;
|
|
2559
|
+
helpText: string;
|
|
2560
|
+
disabled: boolean;
|
|
2561
|
+
checked: boolean;
|
|
2562
|
+
type: string;
|
|
2563
|
+
onClick: () => void;
|
|
2564
|
+
})[];
|
|
2565
|
+
type?: undefined;
|
|
2566
|
+
onClick?: undefined;
|
|
2567
|
+
} | {
|
|
2568
|
+
label: string;
|
|
2569
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
2570
|
+
muiName: string;
|
|
2571
|
+
};
|
|
2572
|
+
subMenu: import("@jbrowse/core/ui").MenuItem[];
|
|
2573
|
+
type?: undefined;
|
|
2574
|
+
onClick?: undefined;
|
|
2575
|
+
} | {
|
|
2576
|
+
label: string;
|
|
2577
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
2578
|
+
muiName: string;
|
|
2579
|
+
};
|
|
2580
|
+
onClick: () => void;
|
|
2581
|
+
type?: undefined;
|
|
2582
|
+
subMenu?: undefined;
|
|
2583
|
+
})[];
|
|
2584
|
+
} & {
|
|
2585
|
+
readonly canDisplayLabels: any;
|
|
2586
|
+
readonly totalHeight: number;
|
|
2587
|
+
readonly featuresReady: boolean;
|
|
2588
|
+
getPortableSettings(): {
|
|
2589
|
+
minorAlleleFrequencyFilter: any;
|
|
2590
|
+
showSidebarLabelsSetting: boolean | undefined;
|
|
2591
|
+
showTree: any;
|
|
2592
|
+
renderingMode: string;
|
|
2593
|
+
lengthCutoffFilter: number;
|
|
2594
|
+
jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
|
|
2595
|
+
referenceDrawingMode: string;
|
|
2596
|
+
clusterTree: string | undefined;
|
|
2597
|
+
treeAreaWidth: number;
|
|
2598
|
+
layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
|
|
2599
|
+
height: number;
|
|
2600
|
+
};
|
|
2601
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2602
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2603
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2604
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2605
|
+
} & {
|
|
2606
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2607
|
+
} & {
|
|
2608
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2609
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2610
|
+
} & {
|
|
2611
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2612
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2613
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
2614
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
2615
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2616
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2617
|
+
}, {
|
|
2618
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
2619
|
+
filled: boolean;
|
|
2620
|
+
reactElement: React.ReactElement | undefined;
|
|
2621
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
2622
|
+
layout: any;
|
|
2623
|
+
blockStatusMessage: string;
|
|
2624
|
+
error: unknown;
|
|
2625
|
+
message: string | undefined;
|
|
2626
|
+
maxHeightReached: boolean;
|
|
2627
|
+
ReactComponent: ({ model, }: {
|
|
2628
|
+
model: {
|
|
2629
|
+
error?: unknown;
|
|
2630
|
+
reload: () => void;
|
|
2631
|
+
message?: React.ReactNode;
|
|
2632
|
+
statusMessage?: string;
|
|
2633
|
+
reactElement?: React.ReactElement;
|
|
2634
|
+
isRenderingPending?: boolean;
|
|
2635
|
+
};
|
|
2636
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
2637
|
+
renderProps: any;
|
|
2638
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
2639
|
+
isRenderingPending: boolean;
|
|
2640
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
2641
|
+
} & {
|
|
2642
|
+
doReload(): void;
|
|
2643
|
+
setStatusMessage(message: string): void;
|
|
2644
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
2645
|
+
setMessage(messageText: string): void;
|
|
2646
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
2647
|
+
setError(error: unknown): void;
|
|
2648
|
+
reload(): void;
|
|
2649
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
2650
|
+
beforeDestroy(): void;
|
|
2651
|
+
} & {
|
|
2652
|
+
readonly statusMessage: any;
|
|
2653
|
+
} & {
|
|
2654
|
+
afterAttach(): void;
|
|
2655
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2656
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
2657
|
+
maxFeatureScreenDensity: {
|
|
2658
|
+
type: string;
|
|
2659
|
+
description: string;
|
|
2660
|
+
defaultValue: number;
|
|
2661
|
+
};
|
|
2662
|
+
fetchSizeLimit: {
|
|
2663
|
+
type: string;
|
|
2664
|
+
defaultValue: number;
|
|
2665
|
+
description: string;
|
|
2666
|
+
};
|
|
2667
|
+
height: {
|
|
2668
|
+
type: string;
|
|
2669
|
+
defaultValue: number;
|
|
2670
|
+
description: string;
|
|
2671
|
+
};
|
|
2672
|
+
mouseover: {
|
|
2673
|
+
type: string;
|
|
2674
|
+
description: string;
|
|
2675
|
+
defaultValue: string;
|
|
2676
|
+
contextVariable: string[];
|
|
2677
|
+
};
|
|
2678
|
+
jexlFilters: {
|
|
2679
|
+
type: string;
|
|
2680
|
+
description: string;
|
|
2681
|
+
defaultValue: never[];
|
|
2682
|
+
};
|
|
2683
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
2684
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2685
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2686
|
+
} & {
|
|
2687
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBareDisplay">;
|
|
2688
|
+
configuration: AnyConfigurationSchemaType;
|
|
2689
|
+
} & {
|
|
2690
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
|
|
2691
|
+
layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
|
|
2692
|
+
configuration: AnyConfigurationSchemaType;
|
|
2693
|
+
minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
2694
|
+
showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2695
|
+
showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
2696
|
+
renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2697
|
+
rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
|
|
2698
|
+
lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
2699
|
+
jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
|
|
2700
|
+
referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2701
|
+
clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2702
|
+
treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
2703
|
+
lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
2704
|
+
}, {
|
|
2705
|
+
rendererTypeName: string;
|
|
2706
|
+
error: unknown;
|
|
2707
|
+
statusMessage: string | undefined;
|
|
2708
|
+
} & {
|
|
2709
|
+
readonly RenderingComponent: React.FC<{
|
|
2710
|
+
model: {
|
|
2711
|
+
id: string;
|
|
2712
|
+
type: string;
|
|
2713
|
+
rpcDriverName: string | undefined;
|
|
2714
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2715
|
+
rendererTypeName: string;
|
|
2716
|
+
error: unknown;
|
|
2717
|
+
statusMessage: string | undefined;
|
|
2718
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2719
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2720
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2721
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2722
|
+
}, {
|
|
2723
|
+
rendererTypeName: string;
|
|
2724
|
+
error: unknown;
|
|
2725
|
+
statusMessage: string | undefined;
|
|
2726
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2727
|
+
onHorizontalScroll?: () => void;
|
|
2728
|
+
blockState?: Record<string, any>;
|
|
2729
|
+
}>;
|
|
2730
|
+
readonly DisplayBlurb: React.FC<{
|
|
2731
|
+
model: {
|
|
2732
|
+
id: string;
|
|
2733
|
+
type: string;
|
|
2734
|
+
rpcDriverName: string | undefined;
|
|
2735
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2736
|
+
rendererTypeName: string;
|
|
2737
|
+
error: unknown;
|
|
2738
|
+
statusMessage: string | undefined;
|
|
2739
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2740
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2741
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2742
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2743
|
+
}, {
|
|
2744
|
+
rendererTypeName: string;
|
|
2745
|
+
error: unknown;
|
|
2746
|
+
statusMessage: string | undefined;
|
|
2747
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2748
|
+
}> | null;
|
|
2749
|
+
readonly adapterConfig: any;
|
|
2750
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2751
|
+
readonly isMinimized: boolean;
|
|
2752
|
+
readonly parentDisplay: any;
|
|
2753
|
+
readonly effectiveRpcDriverName: any;
|
|
2754
|
+
} & {
|
|
2755
|
+
renderProps(): any;
|
|
2756
|
+
renderingProps(): {
|
|
2757
|
+
displayModel: {
|
|
2758
|
+
id: string;
|
|
2759
|
+
type: string;
|
|
2760
|
+
rpcDriverName: string | undefined;
|
|
2761
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2762
|
+
rendererTypeName: string;
|
|
2763
|
+
error: unknown;
|
|
2764
|
+
statusMessage: string | undefined;
|
|
2765
|
+
} & {
|
|
2766
|
+
readonly RenderingComponent: React.FC<{
|
|
2767
|
+
model: {
|
|
2768
|
+
id: string;
|
|
2769
|
+
type: string;
|
|
2770
|
+
rpcDriverName: string | undefined;
|
|
2771
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2772
|
+
rendererTypeName: string;
|
|
2773
|
+
error: unknown;
|
|
2774
|
+
statusMessage: string | undefined;
|
|
2775
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2776
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2777
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2778
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2779
|
+
}, {
|
|
2780
|
+
rendererTypeName: string;
|
|
2781
|
+
error: unknown;
|
|
2782
|
+
statusMessage: string | undefined;
|
|
2783
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2784
|
+
onHorizontalScroll?: () => void;
|
|
2785
|
+
blockState?: Record<string, any>;
|
|
2786
|
+
}>;
|
|
2787
|
+
readonly DisplayBlurb: React.FC<{
|
|
2788
|
+
model: {
|
|
2789
|
+
id: string;
|
|
2790
|
+
type: string;
|
|
2791
|
+
rpcDriverName: string | undefined;
|
|
2792
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2793
|
+
rendererTypeName: string;
|
|
2794
|
+
error: unknown;
|
|
2795
|
+
statusMessage: string | undefined;
|
|
2796
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2797
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2798
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2799
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2800
|
+
}, {
|
|
2801
|
+
rendererTypeName: string;
|
|
2802
|
+
error: unknown;
|
|
2803
|
+
statusMessage: string | undefined;
|
|
2804
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2805
|
+
}> | null;
|
|
2806
|
+
readonly adapterConfig: any;
|
|
2807
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2808
|
+
readonly isMinimized: boolean;
|
|
2809
|
+
readonly parentDisplay: any;
|
|
2810
|
+
readonly effectiveRpcDriverName: any;
|
|
2811
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2812
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2813
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2814
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2815
|
+
}, {
|
|
2816
|
+
rendererTypeName: string;
|
|
2817
|
+
error: unknown;
|
|
2818
|
+
statusMessage: string | undefined;
|
|
2819
|
+
} & {
|
|
2820
|
+
readonly RenderingComponent: React.FC<{
|
|
2821
|
+
model: {
|
|
2822
|
+
id: string;
|
|
2823
|
+
type: string;
|
|
2824
|
+
rpcDriverName: string | undefined;
|
|
2825
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2826
|
+
rendererTypeName: string;
|
|
2827
|
+
error: unknown;
|
|
2828
|
+
statusMessage: string | undefined;
|
|
2829
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2830
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2831
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2832
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2833
|
+
}, {
|
|
2834
|
+
rendererTypeName: string;
|
|
2835
|
+
error: unknown;
|
|
2836
|
+
statusMessage: string | undefined;
|
|
2837
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2838
|
+
onHorizontalScroll?: () => void;
|
|
2839
|
+
blockState?: Record<string, any>;
|
|
2840
|
+
}>;
|
|
2841
|
+
readonly DisplayBlurb: React.FC<{
|
|
2842
|
+
model: {
|
|
2843
|
+
id: string;
|
|
2844
|
+
type: string;
|
|
2845
|
+
rpcDriverName: string | undefined;
|
|
2846
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2847
|
+
rendererTypeName: string;
|
|
2848
|
+
error: unknown;
|
|
2849
|
+
statusMessage: string | undefined;
|
|
2850
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2851
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2852
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2853
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
2854
|
+
}, {
|
|
2855
|
+
rendererTypeName: string;
|
|
2856
|
+
error: unknown;
|
|
2857
|
+
statusMessage: string | undefined;
|
|
2858
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2859
|
+
}> | null;
|
|
2860
|
+
readonly adapterConfig: any;
|
|
2861
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
2862
|
+
readonly isMinimized: boolean;
|
|
2863
|
+
readonly parentDisplay: any;
|
|
2864
|
+
readonly effectiveRpcDriverName: any;
|
|
2865
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2866
|
+
};
|
|
2867
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
2868
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
2869
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2870
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
2871
|
+
regionCannotBeRendered(): null;
|
|
2872
|
+
} & {
|
|
2873
|
+
setStatusMessage(arg?: string): void;
|
|
2874
|
+
setError(error?: unknown): void;
|
|
2875
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
2876
|
+
reload(): void;
|
|
2877
|
+
} & {
|
|
2878
|
+
scrollTop: number;
|
|
2879
|
+
} & {
|
|
2880
|
+
readonly height: number;
|
|
2881
|
+
} & {
|
|
2882
|
+
setScrollTop(scrollTop: number): void;
|
|
2883
|
+
setHeight(displayHeight: number): number;
|
|
2884
|
+
resizeHeight(distance: number): number;
|
|
2885
|
+
} & {
|
|
2886
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2887
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
2888
|
+
currStatsBpPerPx: number;
|
|
2889
|
+
} & {
|
|
2890
|
+
readonly currentBytesRequested: number;
|
|
2891
|
+
readonly currentFeatureScreenDensity: number;
|
|
2892
|
+
readonly maxFeatureScreenDensity: any;
|
|
2893
|
+
readonly featureDensityStatsReady: boolean;
|
|
2894
|
+
readonly maxAllowableBytes: number;
|
|
2895
|
+
} & {
|
|
2896
|
+
afterAttach(): void;
|
|
2897
|
+
} & {
|
|
2898
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
2899
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2900
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
2901
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
2902
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
2903
|
+
clearFeatureDensityStats(): void;
|
|
2904
|
+
} & {
|
|
2905
|
+
readonly regionTooLarge: boolean;
|
|
2906
|
+
readonly regionTooLargeReason: string;
|
|
2907
|
+
} & {
|
|
2908
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
2909
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
2910
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
2911
|
+
} & {
|
|
2912
|
+
mouseoverExtraInformation: string | undefined;
|
|
2913
|
+
featureIdUnderMouse: undefined | string;
|
|
2914
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
2915
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
2916
|
+
} & {
|
|
2917
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
2918
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
2919
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
2920
|
+
} & {
|
|
2921
|
+
readonly renderDelay: number;
|
|
2922
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
2923
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
2924
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
2925
|
+
readonly selectedFeatureId: string | undefined;
|
|
2926
|
+
readonly featureWidgetType: {
|
|
2927
|
+
type: string;
|
|
2928
|
+
id: string;
|
|
2929
|
+
};
|
|
2930
|
+
} & {
|
|
2931
|
+
readonly showTooltipsEnabled: boolean;
|
|
2932
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
2933
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
2934
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
2935
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
2936
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
2937
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2938
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
2939
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
2940
|
+
} & {
|
|
2941
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
2942
|
+
deleteBlock(key: string): void;
|
|
2943
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2944
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
2945
|
+
clearFeatureSelection(): void;
|
|
2946
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
2947
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
2948
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
2949
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
2950
|
+
setShowLegend(s: boolean): void;
|
|
2951
|
+
setShowTooltips(arg: boolean): void;
|
|
2952
|
+
} & {
|
|
2953
|
+
reload(): Promise<void>;
|
|
2954
|
+
} & {
|
|
2955
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2956
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
2957
|
+
} & {
|
|
2958
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2959
|
+
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
2960
|
+
renderingProps(): {
|
|
2961
|
+
displayModel: {
|
|
2962
|
+
id: string;
|
|
2963
|
+
type: string;
|
|
2964
|
+
rpcDriverName: string | undefined;
|
|
2965
|
+
heightPreConfig: number | undefined;
|
|
2966
|
+
userBpPerPxLimit: number | undefined;
|
|
2967
|
+
userByteSizeLimit: number | undefined;
|
|
2968
|
+
blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2969
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2970
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
2971
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
2972
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2973
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
2974
|
+
}, {
|
|
2975
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
2976
|
+
filled: boolean;
|
|
2977
|
+
reactElement: React.ReactElement | undefined;
|
|
2978
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
2979
|
+
layout: any;
|
|
2980
|
+
blockStatusMessage: string;
|
|
2981
|
+
error: unknown;
|
|
2982
|
+
message: string | undefined;
|
|
2983
|
+
maxHeightReached: boolean;
|
|
2984
|
+
ReactComponent: ({ model, }: {
|
|
2985
|
+
model: {
|
|
2986
|
+
error?: unknown;
|
|
2987
|
+
reload: () => void;
|
|
2988
|
+
message?: React.ReactNode;
|
|
2989
|
+
statusMessage?: string;
|
|
2990
|
+
reactElement?: React.ReactElement;
|
|
2991
|
+
isRenderingPending?: boolean;
|
|
2992
|
+
};
|
|
2993
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
2994
|
+
renderProps: any;
|
|
2995
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
2996
|
+
isRenderingPending: boolean;
|
|
2997
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
2998
|
+
} & {
|
|
2999
|
+
doReload(): void;
|
|
3000
|
+
setStatusMessage(message: string): void;
|
|
3001
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
3002
|
+
setMessage(messageText: string): void;
|
|
3003
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
3004
|
+
setError(error: unknown): void;
|
|
3005
|
+
reload(): void;
|
|
3006
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
3007
|
+
beforeDestroy(): void;
|
|
3008
|
+
} & {
|
|
3009
|
+
readonly statusMessage: any;
|
|
3010
|
+
} & {
|
|
3011
|
+
afterAttach(): void;
|
|
3012
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3013
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3014
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
3015
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
3016
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3017
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3018
|
+
}, {
|
|
3019
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
3020
|
+
filled: boolean;
|
|
3021
|
+
reactElement: React.ReactElement | undefined;
|
|
3022
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
3023
|
+
layout: any;
|
|
3024
|
+
blockStatusMessage: string;
|
|
3025
|
+
error: unknown;
|
|
3026
|
+
message: string | undefined;
|
|
3027
|
+
maxHeightReached: boolean;
|
|
3028
|
+
ReactComponent: ({ model, }: {
|
|
3029
|
+
model: {
|
|
3030
|
+
error?: unknown;
|
|
3031
|
+
reload: () => void;
|
|
3032
|
+
message?: React.ReactNode;
|
|
3033
|
+
statusMessage?: string;
|
|
3034
|
+
reactElement?: React.ReactElement;
|
|
3035
|
+
isRenderingPending?: boolean;
|
|
3036
|
+
};
|
|
3037
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
3038
|
+
renderProps: any;
|
|
3039
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
3040
|
+
isRenderingPending: boolean;
|
|
3041
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
3042
|
+
} & {
|
|
3043
|
+
doReload(): void;
|
|
3044
|
+
setStatusMessage(message: string): void;
|
|
3045
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
3046
|
+
setMessage(messageText: string): void;
|
|
3047
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
3048
|
+
setError(error: unknown): void;
|
|
3049
|
+
reload(): void;
|
|
3050
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
3051
|
+
beforeDestroy(): void;
|
|
3052
|
+
} & {
|
|
3053
|
+
readonly statusMessage: any;
|
|
3054
|
+
} & {
|
|
3055
|
+
afterAttach(): void;
|
|
3056
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
3057
|
+
configuration: {
|
|
3058
|
+
[x: string]: any;
|
|
3059
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3060
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
3061
|
+
[x: string]: any;
|
|
3062
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3063
|
+
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
3064
|
+
[x: string]: any;
|
|
3065
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
3066
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
|
|
3067
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
3068
|
+
maxFeatureScreenDensity: {
|
|
3069
|
+
type: string;
|
|
3070
|
+
description: string;
|
|
3071
|
+
defaultValue: number;
|
|
3072
|
+
};
|
|
3073
|
+
fetchSizeLimit: {
|
|
3074
|
+
type: string;
|
|
3075
|
+
defaultValue: number;
|
|
3076
|
+
description: string;
|
|
3077
|
+
};
|
|
3078
|
+
height: {
|
|
3079
|
+
type: string;
|
|
3080
|
+
defaultValue: number;
|
|
3081
|
+
description: string;
|
|
3082
|
+
};
|
|
3083
|
+
mouseover: {
|
|
3084
|
+
type: string;
|
|
3085
|
+
description: string;
|
|
3086
|
+
defaultValue: string;
|
|
3087
|
+
contextVariable: string[];
|
|
3088
|
+
};
|
|
3089
|
+
jexlFilters: {
|
|
3090
|
+
type: string;
|
|
3091
|
+
description: string;
|
|
3092
|
+
defaultValue: never[];
|
|
3093
|
+
};
|
|
3094
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
|
|
3095
|
+
showLegend: boolean | undefined;
|
|
3096
|
+
showTooltips: boolean | undefined;
|
|
3097
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3098
|
+
rendererTypeName: string;
|
|
3099
|
+
error: unknown;
|
|
3100
|
+
statusMessage: string | undefined;
|
|
3101
|
+
} & {
|
|
3102
|
+
readonly RenderingComponent: React.FC<{
|
|
3103
|
+
model: {
|
|
3104
|
+
id: string;
|
|
3105
|
+
type: string;
|
|
3106
|
+
rpcDriverName: string | undefined;
|
|
3107
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3108
|
+
rendererTypeName: string;
|
|
3109
|
+
error: unknown;
|
|
3110
|
+
statusMessage: string | undefined;
|
|
3111
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3112
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3113
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3114
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3115
|
+
}, {
|
|
3116
|
+
rendererTypeName: string;
|
|
3117
|
+
error: unknown;
|
|
3118
|
+
statusMessage: string | undefined;
|
|
3119
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3120
|
+
onHorizontalScroll?: () => void;
|
|
3121
|
+
blockState?: Record<string, any>;
|
|
3122
|
+
}>;
|
|
3123
|
+
readonly DisplayBlurb: React.FC<{
|
|
3124
|
+
model: {
|
|
3125
|
+
id: string;
|
|
3126
|
+
type: string;
|
|
3127
|
+
rpcDriverName: string | undefined;
|
|
3128
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3129
|
+
rendererTypeName: string;
|
|
3130
|
+
error: unknown;
|
|
3131
|
+
statusMessage: string | undefined;
|
|
3132
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3133
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3134
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3135
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3136
|
+
}, {
|
|
3137
|
+
rendererTypeName: string;
|
|
3138
|
+
error: unknown;
|
|
3139
|
+
statusMessage: string | undefined;
|
|
3140
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3141
|
+
}> | null;
|
|
3142
|
+
readonly adapterConfig: any;
|
|
3143
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3144
|
+
readonly isMinimized: boolean;
|
|
3145
|
+
readonly parentDisplay: any;
|
|
3146
|
+
readonly effectiveRpcDriverName: any;
|
|
3147
|
+
} & {
|
|
3148
|
+
renderProps(): any;
|
|
3149
|
+
renderingProps(): {
|
|
3150
|
+
displayModel: {
|
|
3151
|
+
id: string;
|
|
3152
|
+
type: string;
|
|
3153
|
+
rpcDriverName: string | undefined;
|
|
3154
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3155
|
+
rendererTypeName: string;
|
|
3156
|
+
error: unknown;
|
|
3157
|
+
statusMessage: string | undefined;
|
|
3158
|
+
} & {
|
|
3159
|
+
readonly RenderingComponent: React.FC<{
|
|
3160
|
+
model: {
|
|
3161
|
+
id: string;
|
|
3162
|
+
type: string;
|
|
3163
|
+
rpcDriverName: string | undefined;
|
|
3164
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3165
|
+
rendererTypeName: string;
|
|
3166
|
+
error: unknown;
|
|
3167
|
+
statusMessage: string | undefined;
|
|
3168
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3169
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3170
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3171
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3172
|
+
}, {
|
|
3173
|
+
rendererTypeName: string;
|
|
3174
|
+
error: unknown;
|
|
3175
|
+
statusMessage: string | undefined;
|
|
3176
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3177
|
+
onHorizontalScroll?: () => void;
|
|
3178
|
+
blockState?: Record<string, any>;
|
|
3179
|
+
}>;
|
|
3180
|
+
readonly DisplayBlurb: React.FC<{
|
|
3181
|
+
model: {
|
|
3182
|
+
id: string;
|
|
3183
|
+
type: string;
|
|
3184
|
+
rpcDriverName: string | undefined;
|
|
3185
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3186
|
+
rendererTypeName: string;
|
|
3187
|
+
error: unknown;
|
|
3188
|
+
statusMessage: string | undefined;
|
|
3189
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3190
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3191
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3192
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3193
|
+
}, {
|
|
3194
|
+
rendererTypeName: string;
|
|
3195
|
+
error: unknown;
|
|
3196
|
+
statusMessage: string | undefined;
|
|
3197
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3198
|
+
}> | null;
|
|
3199
|
+
readonly adapterConfig: any;
|
|
3200
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3201
|
+
readonly isMinimized: boolean;
|
|
3202
|
+
readonly parentDisplay: any;
|
|
3203
|
+
readonly effectiveRpcDriverName: any;
|
|
3204
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3205
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3206
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3207
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3208
|
+
}, {
|
|
3209
|
+
rendererTypeName: string;
|
|
3210
|
+
error: unknown;
|
|
3211
|
+
statusMessage: string | undefined;
|
|
3212
|
+
} & {
|
|
3213
|
+
readonly RenderingComponent: React.FC<{
|
|
3214
|
+
model: {
|
|
3215
|
+
id: string;
|
|
3216
|
+
type: string;
|
|
3217
|
+
rpcDriverName: string | undefined;
|
|
3218
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3219
|
+
rendererTypeName: string;
|
|
3220
|
+
error: unknown;
|
|
3221
|
+
statusMessage: string | undefined;
|
|
3222
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3223
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3224
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3225
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3226
|
+
}, {
|
|
3227
|
+
rendererTypeName: string;
|
|
3228
|
+
error: unknown;
|
|
3229
|
+
statusMessage: string | undefined;
|
|
3230
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3231
|
+
onHorizontalScroll?: () => void;
|
|
3232
|
+
blockState?: Record<string, any>;
|
|
3233
|
+
}>;
|
|
3234
|
+
readonly DisplayBlurb: React.FC<{
|
|
3235
|
+
model: {
|
|
3236
|
+
id: string;
|
|
3237
|
+
type: string;
|
|
3238
|
+
rpcDriverName: string | undefined;
|
|
3239
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3240
|
+
rendererTypeName: string;
|
|
3241
|
+
error: unknown;
|
|
3242
|
+
statusMessage: string | undefined;
|
|
3243
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3244
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3245
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3246
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3247
|
+
}, {
|
|
3248
|
+
rendererTypeName: string;
|
|
3249
|
+
error: unknown;
|
|
3250
|
+
statusMessage: string | undefined;
|
|
3251
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3252
|
+
}> | null;
|
|
3253
|
+
readonly adapterConfig: any;
|
|
3254
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3255
|
+
readonly isMinimized: boolean;
|
|
3256
|
+
readonly parentDisplay: any;
|
|
3257
|
+
readonly effectiveRpcDriverName: any;
|
|
3258
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3259
|
+
};
|
|
3260
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
3261
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
3262
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
3263
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
3264
|
+
regionCannotBeRendered(): null;
|
|
3265
|
+
} & {
|
|
3266
|
+
setStatusMessage(arg?: string): void;
|
|
3267
|
+
setError(error?: unknown): void;
|
|
3268
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
3269
|
+
reload(): void;
|
|
3270
|
+
} & {
|
|
3271
|
+
scrollTop: number;
|
|
3272
|
+
} & {
|
|
3273
|
+
readonly height: number;
|
|
3274
|
+
} & {
|
|
3275
|
+
setScrollTop(scrollTop: number): void;
|
|
3276
|
+
setHeight(displayHeight: number): number;
|
|
3277
|
+
resizeHeight(distance: number): number;
|
|
3278
|
+
} & {
|
|
3279
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
3280
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
3281
|
+
currStatsBpPerPx: number;
|
|
3282
|
+
} & {
|
|
3283
|
+
readonly currentBytesRequested: number;
|
|
3284
|
+
readonly currentFeatureScreenDensity: number;
|
|
3285
|
+
readonly maxFeatureScreenDensity: any;
|
|
3286
|
+
readonly featureDensityStatsReady: boolean;
|
|
3287
|
+
readonly maxAllowableBytes: number;
|
|
3288
|
+
} & {
|
|
3289
|
+
afterAttach(): void;
|
|
3290
|
+
} & {
|
|
3291
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
3292
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
3293
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
3294
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
3295
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
3296
|
+
clearFeatureDensityStats(): void;
|
|
3297
|
+
} & {
|
|
3298
|
+
readonly regionTooLarge: boolean;
|
|
3299
|
+
readonly regionTooLargeReason: string;
|
|
3300
|
+
} & {
|
|
3301
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
3302
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
3303
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
3304
|
+
} & {
|
|
3305
|
+
mouseoverExtraInformation: string | undefined;
|
|
3306
|
+
featureIdUnderMouse: undefined | string;
|
|
3307
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
3308
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
3309
|
+
} & {
|
|
3310
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
3311
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
3312
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
3313
|
+
} & {
|
|
3314
|
+
readonly renderDelay: number;
|
|
3315
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
3316
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
3317
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
3318
|
+
readonly selectedFeatureId: string | undefined;
|
|
3319
|
+
readonly featureWidgetType: {
|
|
3320
|
+
type: string;
|
|
3321
|
+
id: string;
|
|
3322
|
+
};
|
|
3323
|
+
} & {
|
|
3324
|
+
readonly showTooltipsEnabled: boolean;
|
|
3325
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
3326
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
3327
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
3328
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
3329
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
3330
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
3331
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
3332
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
3333
|
+
} & {
|
|
3334
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
3335
|
+
deleteBlock(key: string): void;
|
|
3336
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
3337
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
3338
|
+
clearFeatureSelection(): void;
|
|
3339
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
3340
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
3341
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
3342
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
3343
|
+
setShowLegend(s: boolean): void;
|
|
3344
|
+
setShowTooltips(arg: boolean): void;
|
|
3345
|
+
} & {
|
|
3346
|
+
reload(): Promise<void>;
|
|
3347
|
+
} & {
|
|
3348
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
3349
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
3350
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3351
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3352
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3353
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3354
|
+
} & {
|
|
3355
|
+
heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
3356
|
+
} & {
|
|
3357
|
+
userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
3358
|
+
userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
3359
|
+
} & {
|
|
3360
|
+
blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3361
|
+
key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3362
|
+
region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
|
|
3363
|
+
reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
3364
|
+
isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3365
|
+
isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3366
|
+
}, {
|
|
3367
|
+
stopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
3368
|
+
filled: boolean;
|
|
3369
|
+
reactElement: React.ReactElement | undefined;
|
|
3370
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
3371
|
+
layout: any;
|
|
3372
|
+
blockStatusMessage: string;
|
|
3373
|
+
error: unknown;
|
|
3374
|
+
message: string | undefined;
|
|
3375
|
+
maxHeightReached: boolean;
|
|
3376
|
+
ReactComponent: ({ model, }: {
|
|
3377
|
+
model: {
|
|
3378
|
+
error?: unknown;
|
|
3379
|
+
reload: () => void;
|
|
3380
|
+
message?: React.ReactNode;
|
|
3381
|
+
statusMessage?: string;
|
|
3382
|
+
reactElement?: React.ReactElement;
|
|
3383
|
+
isRenderingPending?: boolean;
|
|
3384
|
+
};
|
|
3385
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
3386
|
+
renderProps: any;
|
|
3387
|
+
renderArgs: Record<string, unknown> | undefined;
|
|
3388
|
+
isRenderingPending: boolean;
|
|
3389
|
+
cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
|
|
3390
|
+
} & {
|
|
3391
|
+
doReload(): void;
|
|
3392
|
+
setStatusMessage(message: string): void;
|
|
3393
|
+
setLoading(newStopToken: import("@jbrowse/core/util").StopToken): void;
|
|
3394
|
+
setMessage(messageText: string): void;
|
|
3395
|
+
setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
|
|
3396
|
+
setError(error: unknown): void;
|
|
3397
|
+
reload(): void;
|
|
3398
|
+
setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
|
|
3399
|
+
beforeDestroy(): void;
|
|
3400
|
+
} & {
|
|
3401
|
+
readonly statusMessage: any;
|
|
3402
|
+
} & {
|
|
3403
|
+
afterAttach(): void;
|
|
3404
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3405
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
3406
|
+
maxFeatureScreenDensity: {
|
|
3407
|
+
type: string;
|
|
3408
|
+
description: string;
|
|
3409
|
+
defaultValue: number;
|
|
3410
|
+
};
|
|
3411
|
+
fetchSizeLimit: {
|
|
3412
|
+
type: string;
|
|
3413
|
+
defaultValue: number;
|
|
3414
|
+
description: string;
|
|
3415
|
+
};
|
|
3416
|
+
height: {
|
|
3417
|
+
type: string;
|
|
3418
|
+
defaultValue: number;
|
|
3419
|
+
description: string;
|
|
3420
|
+
};
|
|
3421
|
+
mouseover: {
|
|
3422
|
+
type: string;
|
|
3423
|
+
description: string;
|
|
3424
|
+
defaultValue: string;
|
|
3425
|
+
contextVariable: string[];
|
|
3426
|
+
};
|
|
3427
|
+
jexlFilters: {
|
|
3428
|
+
type: string;
|
|
3429
|
+
description: string;
|
|
3430
|
+
defaultValue: never[];
|
|
3431
|
+
};
|
|
3432
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
|
|
3433
|
+
showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
3434
|
+
showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
3435
|
+
}, {
|
|
3436
|
+
rendererTypeName: string;
|
|
3437
|
+
error: unknown;
|
|
3438
|
+
statusMessage: string | undefined;
|
|
3439
|
+
} & {
|
|
3440
|
+
readonly RenderingComponent: React.FC<{
|
|
3441
|
+
model: {
|
|
3442
|
+
id: string;
|
|
3443
|
+
type: string;
|
|
3444
|
+
rpcDriverName: string | undefined;
|
|
3445
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3446
|
+
rendererTypeName: string;
|
|
3447
|
+
error: unknown;
|
|
3448
|
+
statusMessage: string | undefined;
|
|
3449
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3450
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3451
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3452
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3453
|
+
}, {
|
|
3454
|
+
rendererTypeName: string;
|
|
3455
|
+
error: unknown;
|
|
3456
|
+
statusMessage: string | undefined;
|
|
3457
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3458
|
+
onHorizontalScroll?: () => void;
|
|
3459
|
+
blockState?: Record<string, any>;
|
|
3460
|
+
}>;
|
|
3461
|
+
readonly DisplayBlurb: React.FC<{
|
|
3462
|
+
model: {
|
|
3463
|
+
id: string;
|
|
3464
|
+
type: string;
|
|
3465
|
+
rpcDriverName: string | undefined;
|
|
3466
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3467
|
+
rendererTypeName: string;
|
|
3468
|
+
error: unknown;
|
|
3469
|
+
statusMessage: string | undefined;
|
|
3470
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3471
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3472
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3473
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3474
|
+
}, {
|
|
3475
|
+
rendererTypeName: string;
|
|
3476
|
+
error: unknown;
|
|
3477
|
+
statusMessage: string | undefined;
|
|
3478
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3479
|
+
}> | null;
|
|
3480
|
+
readonly adapterConfig: any;
|
|
3481
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3482
|
+
readonly isMinimized: boolean;
|
|
3483
|
+
readonly parentDisplay: any;
|
|
3484
|
+
readonly effectiveRpcDriverName: any;
|
|
3485
|
+
} & {
|
|
3486
|
+
renderProps(): any;
|
|
3487
|
+
renderingProps(): {
|
|
3488
|
+
displayModel: {
|
|
3489
|
+
id: string;
|
|
3490
|
+
type: string;
|
|
3491
|
+
rpcDriverName: string | undefined;
|
|
3492
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3493
|
+
rendererTypeName: string;
|
|
3494
|
+
error: unknown;
|
|
3495
|
+
statusMessage: string | undefined;
|
|
3496
|
+
} & {
|
|
3497
|
+
readonly RenderingComponent: React.FC<{
|
|
3498
|
+
model: {
|
|
3499
|
+
id: string;
|
|
3500
|
+
type: string;
|
|
3501
|
+
rpcDriverName: string | undefined;
|
|
3502
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3503
|
+
rendererTypeName: string;
|
|
3504
|
+
error: unknown;
|
|
3505
|
+
statusMessage: string | undefined;
|
|
3506
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3507
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3508
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3509
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3510
|
+
}, {
|
|
3511
|
+
rendererTypeName: string;
|
|
3512
|
+
error: unknown;
|
|
3513
|
+
statusMessage: string | undefined;
|
|
3514
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3515
|
+
onHorizontalScroll?: () => void;
|
|
3516
|
+
blockState?: Record<string, any>;
|
|
3517
|
+
}>;
|
|
3518
|
+
readonly DisplayBlurb: React.FC<{
|
|
3519
|
+
model: {
|
|
3520
|
+
id: string;
|
|
3521
|
+
type: string;
|
|
3522
|
+
rpcDriverName: string | undefined;
|
|
3523
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3524
|
+
rendererTypeName: string;
|
|
3525
|
+
error: unknown;
|
|
3526
|
+
statusMessage: string | undefined;
|
|
3527
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3528
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3529
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3530
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3531
|
+
}, {
|
|
3532
|
+
rendererTypeName: string;
|
|
3533
|
+
error: unknown;
|
|
3534
|
+
statusMessage: string | undefined;
|
|
3535
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3536
|
+
}> | null;
|
|
3537
|
+
readonly adapterConfig: any;
|
|
3538
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3539
|
+
readonly isMinimized: boolean;
|
|
3540
|
+
readonly parentDisplay: any;
|
|
3541
|
+
readonly effectiveRpcDriverName: any;
|
|
3542
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3543
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3544
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3545
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3546
|
+
}, {
|
|
3547
|
+
rendererTypeName: string;
|
|
3548
|
+
error: unknown;
|
|
3549
|
+
statusMessage: string | undefined;
|
|
3550
|
+
} & {
|
|
3551
|
+
readonly RenderingComponent: React.FC<{
|
|
3552
|
+
model: {
|
|
3553
|
+
id: string;
|
|
3554
|
+
type: string;
|
|
3555
|
+
rpcDriverName: string | undefined;
|
|
3556
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3557
|
+
rendererTypeName: string;
|
|
3558
|
+
error: unknown;
|
|
3559
|
+
statusMessage: string | undefined;
|
|
3560
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3561
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3562
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3563
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3564
|
+
}, {
|
|
3565
|
+
rendererTypeName: string;
|
|
3566
|
+
error: unknown;
|
|
3567
|
+
statusMessage: string | undefined;
|
|
3568
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3569
|
+
onHorizontalScroll?: () => void;
|
|
3570
|
+
blockState?: Record<string, any>;
|
|
3571
|
+
}>;
|
|
3572
|
+
readonly DisplayBlurb: React.FC<{
|
|
3573
|
+
model: {
|
|
3574
|
+
id: string;
|
|
3575
|
+
type: string;
|
|
3576
|
+
rpcDriverName: string | undefined;
|
|
3577
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3578
|
+
rendererTypeName: string;
|
|
3579
|
+
error: unknown;
|
|
3580
|
+
statusMessage: string | undefined;
|
|
3581
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3582
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3583
|
+
type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
3584
|
+
rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
3585
|
+
}, {
|
|
3586
|
+
rendererTypeName: string;
|
|
3587
|
+
error: unknown;
|
|
3588
|
+
statusMessage: string | undefined;
|
|
3589
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3590
|
+
}> | null;
|
|
3591
|
+
readonly adapterConfig: any;
|
|
3592
|
+
readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
|
|
3593
|
+
readonly isMinimized: boolean;
|
|
3594
|
+
readonly parentDisplay: any;
|
|
3595
|
+
readonly effectiveRpcDriverName: any;
|
|
3596
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3597
|
+
};
|
|
3598
|
+
readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
|
|
3599
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
3600
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
3601
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
3602
|
+
regionCannotBeRendered(): null;
|
|
3603
|
+
} & {
|
|
3604
|
+
setStatusMessage(arg?: string): void;
|
|
3605
|
+
setError(error?: unknown): void;
|
|
3606
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
3607
|
+
reload(): void;
|
|
3608
|
+
} & {
|
|
3609
|
+
scrollTop: number;
|
|
3610
|
+
} & {
|
|
3611
|
+
readonly height: number;
|
|
3612
|
+
} & {
|
|
3613
|
+
setScrollTop(scrollTop: number): void;
|
|
3614
|
+
setHeight(displayHeight: number): number;
|
|
3615
|
+
resizeHeight(distance: number): number;
|
|
3616
|
+
} & {
|
|
3617
|
+
featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
3618
|
+
featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
|
|
3619
|
+
currStatsBpPerPx: number;
|
|
3620
|
+
} & {
|
|
3621
|
+
readonly currentBytesRequested: number;
|
|
3622
|
+
readonly currentFeatureScreenDensity: number;
|
|
3623
|
+
readonly maxFeatureScreenDensity: any;
|
|
3624
|
+
readonly featureDensityStatsReady: boolean;
|
|
3625
|
+
readonly maxAllowableBytes: number;
|
|
3626
|
+
} & {
|
|
3627
|
+
afterAttach(): void;
|
|
3628
|
+
} & {
|
|
3629
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
3630
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
3631
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
3632
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
3633
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
|
|
3634
|
+
clearFeatureDensityStats(): void;
|
|
3635
|
+
} & {
|
|
3636
|
+
readonly regionTooLarge: boolean;
|
|
3637
|
+
readonly regionTooLargeReason: string;
|
|
3638
|
+
} & {
|
|
3639
|
+
readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
|
|
3640
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
3641
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
|
|
3642
|
+
} & {
|
|
3643
|
+
mouseoverExtraInformation: string | undefined;
|
|
3644
|
+
featureIdUnderMouse: undefined | string;
|
|
3645
|
+
subfeatureIdUnderMouse: undefined | string;
|
|
3646
|
+
contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
|
|
3647
|
+
} & {
|
|
3648
|
+
readonly DisplayMessageComponent: undefined | React.FC<any>;
|
|
3649
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
3650
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
3651
|
+
} & {
|
|
3652
|
+
readonly renderDelay: number;
|
|
3653
|
+
readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
|
|
3654
|
+
legendItems(_theme?: import("@mui/material").Theme): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
3655
|
+
svgLegendWidth(theme?: import("@mui/material").Theme): number;
|
|
3656
|
+
readonly selectedFeatureId: string | undefined;
|
|
3657
|
+
readonly featureWidgetType: {
|
|
3658
|
+
type: string;
|
|
3659
|
+
id: string;
|
|
3660
|
+
};
|
|
3661
|
+
} & {
|
|
3662
|
+
readonly showTooltipsEnabled: boolean;
|
|
3663
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
3664
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
3665
|
+
getFeatureById(featureId: string, parentFeatureId?: string): import("@jbrowse/core/util").Feature | undefined;
|
|
3666
|
+
readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
|
|
3667
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
3668
|
+
getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
3669
|
+
searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
|
|
3670
|
+
readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
|
|
3671
|
+
} & {
|
|
3672
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
3673
|
+
deleteBlock(key: string): void;
|
|
3674
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
3675
|
+
navToFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
3676
|
+
clearFeatureSelection(): void;
|
|
3677
|
+
setFeatureIdUnderMouse(feature?: string): void;
|
|
3678
|
+
setSubfeatureIdUnderMouse(subfeatureId?: string): void;
|
|
3679
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
|
|
3680
|
+
setMouseoverExtraInformation(extra?: string): void;
|
|
3681
|
+
setShowLegend(s: boolean): void;
|
|
3682
|
+
setShowTooltips(arg: boolean): void;
|
|
3683
|
+
} & {
|
|
3684
|
+
reload(): Promise<void>;
|
|
3685
|
+
} & {
|
|
3686
|
+
selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
3687
|
+
setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
|
|
3688
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3689
|
+
onMouseMove(_: unknown, featureId?: string): void;
|
|
3690
|
+
onMouseLeave(_: unknown): void;
|
|
3691
|
+
onContextMenu(_: unknown): void;
|
|
3692
|
+
};
|
|
3693
|
+
renderProps(): any;
|
|
3694
|
+
} & {
|
|
3695
|
+
renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
3696
|
+
afterAttach(): void;
|
|
3697
|
+
} & {
|
|
3698
|
+
readonly rendererConfig: Omit<any, symbol>;
|
|
3699
|
+
readonly rendererTypeName: any;
|
|
3700
|
+
} & {
|
|
3701
|
+
renderProps(): any;
|
|
3702
|
+
} & {
|
|
3703
|
+
sourcesLoadingStopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
3704
|
+
simplifiedFeaturesStopToken: import("@jbrowse/core/util").StopToken | undefined;
|
|
3705
|
+
featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
|
|
3706
|
+
sourcesVolatile: import("../shared/types.ts").Source[] | undefined;
|
|
3707
|
+
colorByApplied: boolean;
|
|
3708
|
+
featuresVolatile: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3709
|
+
hasPhased: boolean;
|
|
3710
|
+
sampleInfo: undefined | Record<string, import("../shared/types.ts").SampleInfo>;
|
|
3711
|
+
hoveredGenotype: {
|
|
3712
|
+
genotype: string;
|
|
3713
|
+
name: string;
|
|
3714
|
+
} | undefined;
|
|
3715
|
+
hoveredTreeNode: import("../shared/components/types.ts").HoveredTreeNode | undefined;
|
|
3716
|
+
treeCanvas: HTMLCanvasElement | undefined;
|
|
3717
|
+
mouseoverCanvas: HTMLCanvasElement | undefined;
|
|
3718
|
+
} & {
|
|
3719
|
+
readonly renderingMode: string;
|
|
3720
|
+
} & {
|
|
3721
|
+
setJexlFilters(f?: string[]): void;
|
|
3722
|
+
setRowHeight(arg: number | "auto"): void;
|
|
3723
|
+
setHoveredGenotype(arg?: {
|
|
3724
|
+
genotype: string;
|
|
3725
|
+
name: string;
|
|
3726
|
+
}): void;
|
|
3727
|
+
setHoveredTreeNode(node?: import("../shared/components/types.ts").HoveredTreeNode): void;
|
|
3728
|
+
setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
|
|
3729
|
+
setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
|
|
3730
|
+
setTreeAreaWidth(width: number): void;
|
|
3731
|
+
setFeatures(f: import("@jbrowse/core/util").Feature[]): void;
|
|
3732
|
+
setColorByApplied(value: boolean): void;
|
|
3733
|
+
setLayout(layout: import("../shared/types.ts").Source[], clearTree?: boolean): void;
|
|
3734
|
+
clearLayout(): void;
|
|
3735
|
+
setClusterTree(tree?: string): void;
|
|
3736
|
+
setSourcesLoading(token: import("@jbrowse/core/util").StopToken): void;
|
|
3737
|
+
setSimplifiedFeaturesLoading(token: import("@jbrowse/core/util").StopToken): void;
|
|
3738
|
+
setSources(sources: import("../shared/types.ts").Source[]): void;
|
|
3739
|
+
setMafFilter(arg: number): void;
|
|
3740
|
+
setShowSidebarLabels(arg: boolean): void;
|
|
3741
|
+
setShowTree(arg: boolean): void;
|
|
3742
|
+
setPhasedMode(arg: string): void;
|
|
3743
|
+
setAutoHeight(auto: boolean): void;
|
|
3744
|
+
setHasPhased(arg: boolean): void;
|
|
3745
|
+
setSampleInfo(arg: Record<string, import("../shared/types.ts").SampleInfo>): void;
|
|
3746
|
+
setReferenceDrawingMode(arg: string): void;
|
|
3747
|
+
} & {
|
|
3748
|
+
readonly autoHeight: boolean;
|
|
3749
|
+
readonly minorAlleleFrequencyFilter: any;
|
|
3750
|
+
readonly showSidebarLabels: any;
|
|
3751
|
+
readonly showTree: any;
|
|
3752
|
+
readonly referenceDrawingMode: string;
|
|
3753
|
+
activeFilters(): any;
|
|
3754
|
+
readonly sourcesWithoutLayout: import("../shared/types.ts").Source[] | undefined;
|
|
3755
|
+
readonly sources: import("../shared/types.ts").Source[] | undefined;
|
|
3756
|
+
readonly root: any;
|
|
3757
|
+
} & {
|
|
3758
|
+
readonly sourceMap: {
|
|
3759
|
+
[k: string]: import("../shared/types.ts").Source;
|
|
3760
|
+
} | undefined;
|
|
3761
|
+
readonly availableHeight: number;
|
|
3762
|
+
readonly nrow: number;
|
|
3763
|
+
readonly rowHeight: number;
|
|
3764
|
+
readonly hierarchy: any;
|
|
3765
|
+
adapterProps(): any;
|
|
3766
|
+
} & {
|
|
3767
|
+
trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
|
|
3768
|
+
label: string;
|
|
3769
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
3770
|
+
muiName: string;
|
|
3771
|
+
};
|
|
3772
|
+
type: string;
|
|
3773
|
+
subMenu: ({
|
|
3774
|
+
label: string;
|
|
3775
|
+
type: string;
|
|
3776
|
+
checked: any;
|
|
3777
|
+
onClick: () => void;
|
|
3778
|
+
disabled?: undefined;
|
|
3779
|
+
helpText?: undefined;
|
|
3780
|
+
} | {
|
|
3781
|
+
label: string;
|
|
3782
|
+
type: string;
|
|
3783
|
+
checked: any;
|
|
3784
|
+
disabled: boolean;
|
|
3785
|
+
onClick: () => void;
|
|
3786
|
+
helpText?: undefined;
|
|
3787
|
+
} | {
|
|
3788
|
+
label: string;
|
|
3789
|
+
helpText: string;
|
|
3790
|
+
type: string;
|
|
3791
|
+
checked: boolean;
|
|
3792
|
+
onClick: () => void;
|
|
3793
|
+
disabled?: undefined;
|
|
3794
|
+
})[];
|
|
3795
|
+
onClick?: undefined;
|
|
3796
|
+
} | {
|
|
3797
|
+
label: string;
|
|
3798
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
3799
|
+
muiName: string;
|
|
3800
|
+
};
|
|
3801
|
+
subMenu: ({
|
|
3802
|
+
label: string;
|
|
3803
|
+
disabled: boolean;
|
|
3804
|
+
onClick: () => void;
|
|
3805
|
+
type?: undefined;
|
|
3806
|
+
checked?: undefined;
|
|
3807
|
+
} | {
|
|
3808
|
+
label: string;
|
|
3809
|
+
type: string;
|
|
3810
|
+
checked: boolean;
|
|
3811
|
+
onClick: () => void;
|
|
3812
|
+
disabled?: undefined;
|
|
3813
|
+
})[];
|
|
3814
|
+
type?: undefined;
|
|
3815
|
+
onClick?: undefined;
|
|
3816
|
+
} | {
|
|
3817
|
+
label: string;
|
|
3818
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
3819
|
+
muiName: string;
|
|
3820
|
+
};
|
|
3821
|
+
subMenu: ({
|
|
3822
|
+
label: string;
|
|
3823
|
+
helpText: string;
|
|
3824
|
+
type: string;
|
|
3825
|
+
checked: boolean;
|
|
3826
|
+
onClick: () => void;
|
|
3827
|
+
disabled?: undefined;
|
|
3828
|
+
} | {
|
|
3829
|
+
label: string;
|
|
3830
|
+
helpText: string;
|
|
3831
|
+
disabled: boolean;
|
|
3832
|
+
checked: boolean;
|
|
3833
|
+
type: string;
|
|
3834
|
+
onClick: () => void;
|
|
3835
|
+
})[];
|
|
3836
|
+
type?: undefined;
|
|
3837
|
+
onClick?: undefined;
|
|
3838
|
+
} | {
|
|
3839
|
+
label: string;
|
|
3840
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
3841
|
+
muiName: string;
|
|
3842
|
+
};
|
|
3843
|
+
subMenu: import("@jbrowse/core/ui").MenuItem[];
|
|
3844
|
+
type?: undefined;
|
|
3845
|
+
onClick?: undefined;
|
|
3846
|
+
} | {
|
|
3847
|
+
label: string;
|
|
3848
|
+
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
3849
|
+
muiName: string;
|
|
3850
|
+
};
|
|
3851
|
+
onClick: () => void;
|
|
3852
|
+
type?: undefined;
|
|
3853
|
+
subMenu?: undefined;
|
|
3854
|
+
})[];
|
|
3855
|
+
} & {
|
|
3856
|
+
readonly canDisplayLabels: any;
|
|
3857
|
+
readonly totalHeight: number;
|
|
3858
|
+
readonly featuresReady: boolean;
|
|
3859
|
+
getPortableSettings(): {
|
|
3860
|
+
minorAlleleFrequencyFilter: any;
|
|
3861
|
+
showSidebarLabelsSetting: boolean | undefined;
|
|
3862
|
+
showTree: any;
|
|
3863
|
+
renderingMode: string;
|
|
3864
|
+
lengthCutoffFilter: number;
|
|
3865
|
+
jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
|
|
3866
|
+
referenceDrawingMode: string;
|
|
3867
|
+
clusterTree: string | undefined;
|
|
3868
|
+
treeAreaWidth: number;
|
|
3869
|
+
layout: import("../shared/types.ts").Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>>;
|
|
3870
|
+
height: number;
|
|
3871
|
+
};
|
|
3872
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3873
|
+
onFeatureClick(_: React.MouseEvent, featureId: string): Promise<void>;
|
|
3874
|
+
};
|
|
3875
|
+
legendItems(): import("@jbrowse/plugin-linear-genome-view").LegendItem[];
|
|
3876
|
+
} & {
|
|
3877
|
+
afterAttach(): void;
|
|
3878
|
+
} & {
|
|
3879
|
+
readonly blockType: string;
|
|
3880
|
+
readonly prefersOffset: boolean;
|
|
3881
|
+
readonly featureWidgetType: {
|
|
3882
|
+
type: string;
|
|
3883
|
+
id: string;
|
|
3884
|
+
};
|
|
1281
3885
|
} & {
|
|
1282
3886
|
renderProps(): any;
|
|
1283
3887
|
} & {
|
|
@@ -1376,14 +3980,14 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
|
|
|
1376
3980
|
type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
|
|
1377
3981
|
layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<import("../shared/types.ts").Source[], import("../shared/types.ts").Source[], import("../shared/types.ts").Source[]>, [undefined]>;
|
|
1378
3982
|
configuration: AnyConfigurationSchemaType;
|
|
1379
|
-
|
|
1380
|
-
showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").
|
|
1381
|
-
|
|
1382
|
-
|
|
3983
|
+
minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
|
|
3984
|
+
showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
3985
|
+
showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
|
|
3986
|
+
renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1383
3987
|
rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
|
|
1384
3988
|
lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
1385
3989
|
jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
|
|
1386
|
-
|
|
3990
|
+
referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1387
3991
|
clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
1388
3992
|
treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
1389
3993
|
lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|