@jbrowse/plugin-variants 4.0.4 → 4.1.3

package/esm/MultiLinearVariantDisplay/model.js

@@ -9,6 +9,12 @@ export function stateModelFactory(configSchema) {
         get rendererTypeName() {
             return 'MultiVariantRenderer';
         },
+        get featureWidgetType() {
+            return {
+                type: 'VariantFeatureWidget',
+                id: 'variantFeature',
+            };
+        },
     }))
         .actions(self => {
         const { renderSvg: superRenderSvg } = self;

package/esm/MultiLinearVariantDisplay/renderSvg.d.ts

@@ -1,3 +1,11 @@
-import type { MultiLinearVariantDisplayModel } from './model.ts';
+import type { LegendBarModel } from '../shared/components/types.ts';
 import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
-export declare function renderSvg(self: MultiLinearVariantDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
+interface Model extends LegendBarModel {
+    regionCannotBeRenderedText?: any;
+    hierarchy: any;
+    availableHeight: number;
+    totalHeight: number;
+    treeAreaWidth: number;
+}
+export declare function renderSvg(self: Model, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
+export {};

package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts

@@ -5,6 +5,31 @@ export default function configSchemaF(pluginManager: PluginManager): import("nod
         type: string;
         defaultValue: number;
     };
+    showReferenceAlleles: {
+        type: string;
+        defaultValue: boolean;
+    };
+    showSidebarLabels: {
+        type: string;
+        defaultValue: boolean;
+    };
+    showTree: {
+        type: string;
+        defaultValue: boolean;
+    };
+    renderingMode: {
+        type: string;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        defaultValue: string;
+    };
+    minorAlleleFrequencyFilter: {
+        type: string;
+        defaultValue: number;
+    };
+    colorBy: {
+        type: string;
+        defaultValue: string;
+    };
 }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
     renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
 }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{

package/esm/MultiLinearVariantMatrixDisplay/configSchema.js

@@ -1,4 +1,5 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
+import { types } from '@jbrowse/mobx-state-tree';
 import { linearBasicDisplayConfigSchemaFactory } from '@jbrowse/plugin-linear-genome-view';
 import configSchema from "../MultiLinearVariantMatrixRenderer/configSchema.js";
 function x() { }
@@ -9,6 +10,31 @@ export default function configSchemaF(pluginManager) {
             type: 'number',
             defaultValue: 250,
         },
+        showReferenceAlleles: {
+            type: 'boolean',
+            defaultValue: false,
+        },
+        showSidebarLabels: {
+            type: 'boolean',
+            defaultValue: true,
+        },
+        showTree: {
+            type: 'boolean',
+            defaultValue: true,
+        },
+        renderingMode: {
+            type: 'stringEnum',
+            model: types.enumeration('RenderingMode', ['alleleCount', 'phased']),
+            defaultValue: 'alleleCount',
+        },
+        minorAlleleFrequencyFilter: {
+            type: 'number',
+            defaultValue: 0,
+        },
+        colorBy: {
+            type: 'string',
+            defaultValue: '',
+        },
     }, {
         baseConfiguration: linearBasicDisplayConfigSchemaFactory(pluginManager),
         explicitlyTyped: true,