@jbrowse/plugin-variants 4.0.4 → 4.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (128) hide show
  1. package/esm/LDDisplay/SharedLDConfigSchema.d.ts +102 -0
  2. package/esm/LDDisplay/SharedLDConfigSchema.js +83 -0
  3. package/esm/LDDisplay/afterAttach.d.ts +2 -0
  4. package/esm/LDDisplay/afterAttach.js +123 -0
  5. package/esm/LDDisplay/components/BaseDisplayComponent.d.ts +15 -0
  6. package/esm/LDDisplay/components/BaseDisplayComponent.js +39 -0
  7. package/esm/LDDisplay/components/LDColorLegend.d.ts +15 -0
  8. package/esm/LDDisplay/components/LDColorLegend.js +75 -0
  9. package/esm/LDDisplay/components/LDDisplayComponent.d.ts +5 -0
  10. package/esm/LDDisplay/components/LDDisplayComponent.js +203 -0
  11. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.d.ts +16 -0
  12. package/esm/LDDisplay/components/LinesConnectingMatrixToGenomicPosition.js +109 -0
  13. package/esm/LDDisplay/configSchema1.d.ts +115 -0
  14. package/esm/LDDisplay/configSchema1.js +16 -0
  15. package/esm/LDDisplay/configSchema2.d.ts +115 -0
  16. package/esm/LDDisplay/configSchema2.js +16 -0
  17. package/esm/LDDisplay/index.d.ts +2 -0
  18. package/esm/LDDisplay/index.js +35 -0
  19. package/esm/LDDisplay/renderSvg.d.ts +3 -0
  20. package/esm/LDDisplay/renderSvg.js +36 -0
  21. package/esm/LDDisplay/shared.d.ts +367 -0
  22. package/esm/LDDisplay/shared.js +467 -0
  23. package/esm/LDDisplay/stateModel1.d.ts +365 -0
  24. package/esm/LDDisplay/stateModel1.js +10 -0
  25. package/esm/LDDisplay/stateModel2.d.ts +365 -0
  26. package/esm/LDDisplay/stateModel2.js +10 -0
  27. package/esm/LDRenderer/LDRenderer.d.ts +30 -0
  28. package/esm/LDRenderer/LDRenderer.js +109 -0
  29. package/esm/LDRenderer/components/LDRendering.d.ts +2 -0
  30. package/esm/LDRenderer/components/LDRendering.js +4 -0
  31. package/esm/LDRenderer/configSchema.d.ts +8 -0
  32. package/esm/LDRenderer/configSchema.js +10 -0
  33. package/esm/LDRenderer/index.d.ts +2 -0
  34. package/esm/LDRenderer/index.js +11 -0
  35. package/esm/LDRenderer/makeImageData.d.ts +20 -0
  36. package/esm/LDRenderer/makeImageData.js +157 -0
  37. package/esm/LDRenderer/types.d.ts +8 -0
  38. package/esm/LDRenderer/types.js +1 -0
  39. package/esm/LDTrack/configSchema.d.ts +85 -0
  40. package/esm/LDTrack/configSchema.js +7 -0
  41. package/esm/LDTrack/index.d.ts +2 -0
  42. package/esm/LDTrack/index.js +14 -0
  43. package/esm/LinearVariantDisplay/model.d.ts +126 -42
  44. package/esm/LinearVariantDisplay/model.js +46 -8
  45. package/esm/MultiLinearVariantDisplay/configSchema.d.ts +27 -1
  46. package/esm/MultiLinearVariantDisplay/model.d.ts +2635 -31
  47. package/esm/MultiLinearVariantDisplay/model.js +6 -0
  48. package/esm/MultiLinearVariantDisplay/renderSvg.d.ts +10 -2
  49. package/esm/MultiLinearVariantMatrixDisplay/configSchema.d.ts +25 -0
  50. package/esm/MultiLinearVariantMatrixDisplay/configSchema.js +26 -0
  51. package/esm/MultiLinearVariantMatrixDisplay/model.d.ts +2636 -32
  52. package/esm/MultiLinearVariantMatrixDisplay/model.js +6 -0
  53. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.d.ts +2 -2
  54. package/esm/MultiLinearVariantMatrixRenderer/MultiLinearVariantMatrixRenderer.js +11 -9
  55. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.d.ts +8 -0
  56. package/esm/MultiLinearVariantMatrixRenderer/components/MultiLinearVariantMatrixRendering.js +14 -2
  57. package/esm/MultiLinearVariantMatrixRenderer/makeImageData.js +8 -11
  58. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.d.ts +2 -2
  59. package/esm/MultiLinearVariantRenderer/MultiVariantRenderer.js +4 -3
  60. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.d.ts +4 -0
  61. package/esm/MultiLinearVariantRenderer/components/MultiLinearVariantRendering.js +23 -2
  62. package/esm/MultiLinearVariantRenderer/makeImageData.js +12 -12
  63. package/esm/PlinkLDAdapter/PlinkLDAdapter.d.ts +25 -0
  64. package/esm/PlinkLDAdapter/PlinkLDAdapter.js +147 -0
  65. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.d.ts +24 -0
  66. package/esm/PlinkLDAdapter/PlinkLDTabixAdapter.js +156 -0
  67. package/esm/PlinkLDAdapter/configSchema.d.ts +10 -0
  68. package/esm/PlinkLDAdapter/configSchema.js +25 -0
  69. package/esm/PlinkLDAdapter/configSchemaTabix.d.ts +24 -0
  70. package/esm/PlinkLDAdapter/configSchemaTabix.js +46 -0
  71. package/esm/PlinkLDAdapter/index.d.ts +2 -0
  72. package/esm/PlinkLDAdapter/index.js +25 -0
  73. package/esm/PlinkLDAdapter/types.d.ts +29 -0
  74. package/esm/PlinkLDAdapter/types.js +1 -0
  75. package/esm/VariantFeatureWidget/VariantSampleGrid/VariantSampleGrid.js +1 -1
  76. package/esm/VariantRPC/MultiVariantGetFeatureDetails.d.ts +14 -0
  77. package/esm/VariantRPC/MultiVariantGetFeatureDetails.js +15 -0
  78. package/esm/VariantRPC/MultiVariantGetGenotypeMatrix.js +4 -1
  79. package/esm/VariantRPC/MultiVariantGetSimplifiedFeatures.js +3 -3
  80. package/esm/VariantRPC/executeClusterGenotypeMatrix.js +6 -3
  81. package/esm/VariantRPC/getGenotypeMatrix.d.ts +2 -3
  82. package/esm/VariantRPC/getGenotypeMatrix.js +4 -5
  83. package/esm/VariantRPC/getLDMatrix.d.ts +47 -0
  84. package/esm/VariantRPC/getLDMatrix.js +387 -0
  85. package/esm/VariantRPC/getLDMatrixFromPlink.d.ts +16 -0
  86. package/esm/VariantRPC/getLDMatrixFromPlink.js +105 -0
  87. package/esm/VariantRPC/getPhasedGenotypeMatrix.d.ts +2 -3
  88. package/esm/VariantRPC/getPhasedGenotypeMatrix.js +4 -5
  89. package/esm/VariantRPC/types.d.ts +3 -0
  90. package/esm/VcfAdapter/VcfAdapter.d.ts +1 -1
  91. package/esm/VcfAdapter/VcfAdapter.js +1 -2
  92. package/esm/VcfExtensionPoints/index.js +29 -3
  93. package/esm/VcfFeature/index.d.ts +2 -1
  94. package/esm/VcfFeature/index.js +4 -2
  95. package/esm/index.d.ts +1 -0
  96. package/esm/index.js +23 -0
  97. package/esm/shared/MultiVariantBaseModel.d.ts +2626 -26
  98. package/esm/shared/MultiVariantBaseModel.js +88 -39
  99. package/esm/shared/SharedVariantConfigSchema.d.ts +27 -1
  100. package/esm/shared/SharedVariantConfigSchema.js +28 -1
  101. package/esm/shared/VariantFeatureCache.d.ts +27 -0
  102. package/esm/shared/VariantFeatureCache.js +48 -0
  103. package/esm/shared/VariantRendererType.d.ts +23 -0
  104. package/esm/shared/VariantRendererType.js +15 -0
  105. package/esm/shared/applyColorPalette.d.ts +9 -0
  106. package/esm/shared/applyColorPalette.js +23 -0
  107. package/esm/shared/colorByAutorun.d.ts +10 -0
  108. package/esm/shared/colorByAutorun.js +39 -0
  109. package/esm/shared/components/AddFiltersDialog.d.ts +3 -3
  110. package/esm/shared/components/AddFiltersDialog.js +29 -22
  111. package/esm/shared/components/LDFilterDialog.d.ts +13 -0
  112. package/esm/shared/components/LDFilterDialog.js +102 -0
  113. package/esm/shared/components/MAFFilterDialog.js +23 -16
  114. package/esm/shared/components/RecombinationTrack.d.ts +21 -0
  115. package/esm/shared/components/RecombinationTrack.js +54 -0
  116. package/esm/shared/components/RecombinationYScaleBar.d.ts +7 -0
  117. package/esm/shared/components/RecombinationYScaleBar.js +34 -0
  118. package/esm/shared/components/SetColorDialogRowPalettizer.d.ts +3 -8
  119. package/esm/shared/components/SetColorDialogRowPalettizer.js +2 -14
  120. package/esm/shared/drawAlleleCount.js +9 -0
  121. package/esm/shared/drawPhased.d.ts +1 -1
  122. package/esm/shared/drawPhased.js +31 -2
  123. package/esm/shared/mafFilterUtils.d.ts +5 -0
  124. package/esm/shared/mafFilterUtils.js +17 -0
  125. package/esm/shared/minorAlleleFrequencyUtils.d.ts +4 -2
  126. package/esm/shared/minorAlleleFrequencyUtils.js +261 -19
  127. package/esm/shared/setupMultiVariantAutoruns.js +2 -0
  128. package/package.json +11 -10
@@ -97,14 +97,14 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
97
97
  type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
98
98
  layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
99
99
  configuration: AnyConfigurationSchemaType;
100
- minorAlleleFrequencyFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
101
- showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
102
- showTree: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
103
- renderingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
100
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
101
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
102
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
103
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
104
104
  rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
105
105
  lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
106
106
  jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
107
- referenceDrawingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
107
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
108
108
  clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
109
109
  treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
110
110
  lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
@@ -1111,6 +1111,7 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1111
1111
  simplifiedFeaturesStopToken: StopToken | undefined;
1112
1112
  featureUnderMouseVolatile: Feature | undefined;
1113
1113
  sourcesVolatile: Source[] | undefined;
1114
+ colorByApplied: boolean;
1114
1115
  featuresVolatile: Feature[] | undefined;
1115
1116
  hasPhased: boolean;
1116
1117
  sampleInfo: undefined | Record<string, SampleInfo>;
@@ -1121,6 +1122,8 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1121
1122
  hoveredTreeNode: HoveredTreeNode | undefined;
1122
1123
  treeCanvas: HTMLCanvasElement | undefined;
1123
1124
  mouseoverCanvas: HTMLCanvasElement | undefined;
1125
+ } & {
1126
+ readonly renderingMode: string;
1124
1127
  } & {
1125
1128
  setJexlFilters(f?: string[]): void;
1126
1129
  setRowHeight(arg: number | "auto"): void;
@@ -1133,6 +1136,7 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1133
1136
  setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
1134
1137
  setTreeAreaWidth(width: number): void;
1135
1138
  setFeatures(f: Feature[]): void;
1139
+ setColorByApplied(value: boolean): void;
1136
1140
  setLayout(layout: Source[], clearTree?: boolean): void;
1137
1141
  clearLayout(): void;
1138
1142
  setClusterTree(tree?: string): void;
@@ -1149,7 +1153,11 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1149
1153
  setReferenceDrawingMode(arg: string): void;
1150
1154
  } & {
1151
1155
  readonly autoHeight: boolean;
1152
- readonly activeFilters: any;
1156
+ readonly minorAlleleFrequencyFilter: any;
1157
+ readonly showSidebarLabels: any;
1158
+ readonly showTree: any;
1159
+ readonly referenceDrawingMode: string;
1160
+ activeFilters(): any;
1153
1161
  readonly sourcesWithoutLayout: Source[] | undefined;
1154
1162
  readonly sources: Source[] | undefined;
1155
1163
  readonly root: any;
@@ -1172,24 +1180,24 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1172
1180
  subMenu: ({
1173
1181
  label: string;
1174
1182
  type: string;
1175
- checked: boolean;
1176
- disabled: boolean;
1183
+ checked: any;
1177
1184
  onClick: () => void;
1185
+ disabled?: undefined;
1178
1186
  helpText?: undefined;
1179
1187
  } | {
1180
1188
  label: string;
1181
- helpText: string;
1182
1189
  type: string;
1183
- checked: boolean;
1190
+ checked: any;
1191
+ disabled: boolean;
1184
1192
  onClick: () => void;
1185
- disabled?: undefined;
1193
+ helpText?: undefined;
1186
1194
  } | {
1187
1195
  label: string;
1196
+ helpText: string;
1188
1197
  type: string;
1189
- checked: boolean | undefined;
1198
+ checked: boolean;
1190
1199
  onClick: () => void;
1191
1200
  disabled?: undefined;
1192
- helpText?: undefined;
1193
1201
  })[];
1194
1202
  onClick?: undefined;
1195
1203
  } | {
@@ -1239,10 +1247,7 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1239
1247
  icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
1240
1248
  muiName: string;
1241
1249
  };
1242
- subMenu: {
1243
- label: string;
1244
- onClick: () => void;
1245
- }[];
1250
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
1246
1251
  type?: undefined;
1247
1252
  onClick?: undefined;
1248
1253
  } | {
@@ -1255,13 +1260,13 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1255
1260
  subMenu?: undefined;
1256
1261
  })[];
1257
1262
  } & {
1258
- readonly canDisplayLabels: boolean;
1263
+ readonly canDisplayLabels: any;
1259
1264
  readonly totalHeight: number;
1260
1265
  readonly featuresReady: boolean;
1261
1266
  getPortableSettings(): {
1262
- minorAlleleFrequencyFilter: number;
1263
- showSidebarLabelsSetting: boolean;
1264
- showTree: boolean;
1267
+ minorAlleleFrequencyFilter: any;
1268
+ showSidebarLabelsSetting: boolean | undefined;
1269
+ showTree: any;
1265
1270
  renderingMode: string;
1266
1271
  lengthCutoffFilter: number;
1267
1272
  jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
@@ -1273,6 +1278,2601 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1273
1278
  };
1274
1279
  } & {
1275
1280
  renderProps(): any;
1281
+ renderingProps(): {
1282
+ displayModel: {
1283
+ id: string;
1284
+ type: never;
1285
+ rpcDriverName: string | undefined;
1286
+ heightPreConfig: number | undefined;
1287
+ userBpPerPxLimit: number | undefined;
1288
+ userByteSizeLimit: number | undefined;
1289
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
1290
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1291
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1292
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1293
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1294
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1295
+ }, {
1296
+ stopToken: StopToken | undefined;
1297
+ filled: boolean;
1298
+ reactElement: React.ReactElement | undefined;
1299
+ features: Map<string, Feature> | undefined;
1300
+ layout: any;
1301
+ blockStatusMessage: string;
1302
+ error: unknown;
1303
+ message: string | undefined;
1304
+ maxHeightReached: boolean;
1305
+ ReactComponent: ({ model, }: {
1306
+ model: {
1307
+ error?: unknown;
1308
+ reload: () => void;
1309
+ message?: React.ReactNode;
1310
+ statusMessage?: string;
1311
+ reactElement?: React.ReactElement;
1312
+ isRenderingPending?: boolean;
1313
+ };
1314
+ }) => import("react/jsx-runtime").JSX.Element;
1315
+ renderProps: any;
1316
+ renderArgs: Record<string, unknown> | undefined;
1317
+ isRenderingPending: boolean;
1318
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1319
+ } & {
1320
+ doReload(): void;
1321
+ setStatusMessage(message: string): void;
1322
+ setLoading(newStopToken: StopToken): void;
1323
+ setMessage(messageText: string): void;
1324
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1325
+ setError(error: unknown): void;
1326
+ reload(): void;
1327
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1328
+ beforeDestroy(): void;
1329
+ } & {
1330
+ readonly statusMessage: any;
1331
+ } & {
1332
+ afterAttach(): void;
1333
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1334
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1335
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1336
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1337
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1338
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1339
+ }, {
1340
+ stopToken: StopToken | undefined;
1341
+ filled: boolean;
1342
+ reactElement: React.ReactElement | undefined;
1343
+ features: Map<string, Feature> | undefined;
1344
+ layout: any;
1345
+ blockStatusMessage: string;
1346
+ error: unknown;
1347
+ message: string | undefined;
1348
+ maxHeightReached: boolean;
1349
+ ReactComponent: ({ model, }: {
1350
+ model: {
1351
+ error?: unknown;
1352
+ reload: () => void;
1353
+ message?: React.ReactNode;
1354
+ statusMessage?: string;
1355
+ reactElement?: React.ReactElement;
1356
+ isRenderingPending?: boolean;
1357
+ };
1358
+ }) => import("react/jsx-runtime").JSX.Element;
1359
+ renderProps: any;
1360
+ renderArgs: Record<string, unknown> | undefined;
1361
+ isRenderingPending: boolean;
1362
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1363
+ } & {
1364
+ doReload(): void;
1365
+ setStatusMessage(message: string): void;
1366
+ setLoading(newStopToken: StopToken): void;
1367
+ setMessage(messageText: string): void;
1368
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1369
+ setError(error: unknown): void;
1370
+ reload(): void;
1371
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1372
+ beforeDestroy(): void;
1373
+ } & {
1374
+ readonly statusMessage: any;
1375
+ } & {
1376
+ afterAttach(): void;
1377
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1378
+ configuration: {
1379
+ [x: string]: any;
1380
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1381
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1382
+ [x: string]: any;
1383
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1384
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1385
+ [x: string]: any;
1386
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1387
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1388
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1389
+ maxFeatureScreenDensity: {
1390
+ type: string;
1391
+ description: string;
1392
+ defaultValue: number;
1393
+ };
1394
+ fetchSizeLimit: {
1395
+ type: string;
1396
+ defaultValue: number;
1397
+ description: string;
1398
+ };
1399
+ height: {
1400
+ type: string;
1401
+ defaultValue: number;
1402
+ description: string;
1403
+ };
1404
+ mouseover: {
1405
+ type: string;
1406
+ description: string;
1407
+ defaultValue: string;
1408
+ contextVariable: string[];
1409
+ };
1410
+ jexlFilters: {
1411
+ type: string;
1412
+ description: string;
1413
+ defaultValue: never[];
1414
+ };
1415
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">> & AnyConfigurationSchemaType> & {
1416
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1417
+ [x: string]: any;
1418
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1419
+ };
1420
+ showLegend: boolean | undefined;
1421
+ showTooltips: boolean | undefined;
1422
+ layout: Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>>;
1423
+ minorAlleleFrequencyFilterSetting: number | undefined;
1424
+ showSidebarLabelsSetting: boolean | undefined;
1425
+ showTreeSetting: boolean | undefined;
1426
+ renderingModeSetting: string | undefined;
1427
+ rowHeightMode: number | "auto";
1428
+ lengthCutoffFilter: number;
1429
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
1430
+ referenceDrawingModeSetting: string | undefined;
1431
+ clusterTree: string | undefined;
1432
+ treeAreaWidth: number;
1433
+ lineZoneHeight: number;
1434
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1435
+ rendererTypeName: string;
1436
+ error: unknown;
1437
+ statusMessage: string | undefined;
1438
+ } & {
1439
+ readonly RenderingComponent: React.FC<{
1440
+ model: {
1441
+ id: string;
1442
+ type: string;
1443
+ rpcDriverName: string | undefined;
1444
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1445
+ rendererTypeName: string;
1446
+ error: unknown;
1447
+ statusMessage: string | undefined;
1448
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1449
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1450
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1451
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1452
+ }, {
1453
+ rendererTypeName: string;
1454
+ error: unknown;
1455
+ statusMessage: string | undefined;
1456
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1457
+ onHorizontalScroll?: () => void;
1458
+ blockState?: Record<string, any>;
1459
+ }>;
1460
+ readonly DisplayBlurb: React.FC<{
1461
+ model: {
1462
+ id: string;
1463
+ type: string;
1464
+ rpcDriverName: string | undefined;
1465
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1466
+ rendererTypeName: string;
1467
+ error: unknown;
1468
+ statusMessage: string | undefined;
1469
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1470
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1471
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1472
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1473
+ }, {
1474
+ rendererTypeName: string;
1475
+ error: unknown;
1476
+ statusMessage: string | undefined;
1477
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1478
+ }> | null;
1479
+ readonly adapterConfig: any;
1480
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1481
+ readonly isMinimized: boolean;
1482
+ readonly parentDisplay: any;
1483
+ readonly effectiveRpcDriverName: any;
1484
+ } & {
1485
+ renderProps(): any;
1486
+ renderingProps(): {
1487
+ displayModel: {
1488
+ id: string;
1489
+ type: string;
1490
+ rpcDriverName: string | undefined;
1491
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1492
+ rendererTypeName: string;
1493
+ error: unknown;
1494
+ statusMessage: string | undefined;
1495
+ } & {
1496
+ readonly RenderingComponent: React.FC<{
1497
+ model: {
1498
+ id: string;
1499
+ type: string;
1500
+ rpcDriverName: string | undefined;
1501
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1502
+ rendererTypeName: string;
1503
+ error: unknown;
1504
+ statusMessage: string | undefined;
1505
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1506
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1507
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1508
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1509
+ }, {
1510
+ rendererTypeName: string;
1511
+ error: unknown;
1512
+ statusMessage: string | undefined;
1513
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1514
+ onHorizontalScroll?: () => void;
1515
+ blockState?: Record<string, any>;
1516
+ }>;
1517
+ readonly DisplayBlurb: React.FC<{
1518
+ model: {
1519
+ id: string;
1520
+ type: string;
1521
+ rpcDriverName: string | undefined;
1522
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1523
+ rendererTypeName: string;
1524
+ error: unknown;
1525
+ statusMessage: string | undefined;
1526
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1527
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1528
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1529
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1530
+ }, {
1531
+ rendererTypeName: string;
1532
+ error: unknown;
1533
+ statusMessage: string | undefined;
1534
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1535
+ }> | null;
1536
+ readonly adapterConfig: any;
1537
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1538
+ readonly isMinimized: boolean;
1539
+ readonly parentDisplay: any;
1540
+ readonly effectiveRpcDriverName: any;
1541
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1542
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1543
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1544
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1545
+ }, {
1546
+ rendererTypeName: string;
1547
+ error: unknown;
1548
+ statusMessage: string | undefined;
1549
+ } & {
1550
+ readonly RenderingComponent: React.FC<{
1551
+ model: {
1552
+ id: string;
1553
+ type: string;
1554
+ rpcDriverName: string | undefined;
1555
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1556
+ rendererTypeName: string;
1557
+ error: unknown;
1558
+ statusMessage: string | undefined;
1559
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1560
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1561
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1562
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1563
+ }, {
1564
+ rendererTypeName: string;
1565
+ error: unknown;
1566
+ statusMessage: string | undefined;
1567
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1568
+ onHorizontalScroll?: () => void;
1569
+ blockState?: Record<string, any>;
1570
+ }>;
1571
+ readonly DisplayBlurb: React.FC<{
1572
+ model: {
1573
+ id: string;
1574
+ type: string;
1575
+ rpcDriverName: string | undefined;
1576
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1577
+ rendererTypeName: string;
1578
+ error: unknown;
1579
+ statusMessage: string | undefined;
1580
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1581
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1582
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1583
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1584
+ }, {
1585
+ rendererTypeName: string;
1586
+ error: unknown;
1587
+ statusMessage: string | undefined;
1588
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1589
+ }> | null;
1590
+ readonly adapterConfig: any;
1591
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1592
+ readonly isMinimized: boolean;
1593
+ readonly parentDisplay: any;
1594
+ readonly effectiveRpcDriverName: any;
1595
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1596
+ };
1597
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1598
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1599
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1600
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1601
+ regionCannotBeRendered(): null;
1602
+ } & {
1603
+ setStatusMessage(arg?: string): void;
1604
+ setError(error?: unknown): void;
1605
+ setRpcDriverName(rpcDriverName: string): void;
1606
+ reload(): void;
1607
+ } & {
1608
+ scrollTop: number;
1609
+ } & {
1610
+ readonly height: number;
1611
+ } & {
1612
+ setScrollTop(scrollTop: number): void;
1613
+ setHeight(displayHeight: number): number;
1614
+ resizeHeight(distance: number): number;
1615
+ } & {
1616
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1617
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
1618
+ currStatsBpPerPx: number;
1619
+ } & {
1620
+ readonly currentBytesRequested: number;
1621
+ readonly currentFeatureScreenDensity: number;
1622
+ readonly maxFeatureScreenDensity: any;
1623
+ readonly featureDensityStatsReady: boolean;
1624
+ readonly maxAllowableBytes: number;
1625
+ } & {
1626
+ afterAttach(): void;
1627
+ } & {
1628
+ setCurrStatsBpPerPx(n: number): void;
1629
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1630
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
1631
+ setFeatureDensityStatsP(arg: any): void;
1632
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
1633
+ clearFeatureDensityStats(): void;
1634
+ } & {
1635
+ readonly regionTooLarge: boolean;
1636
+ readonly regionTooLargeReason: string;
1637
+ } & {
1638
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
1639
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
1640
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
1641
+ } & {
1642
+ mouseoverExtraInformation: string | undefined;
1643
+ featureIdUnderMouse: undefined | string;
1644
+ subfeatureIdUnderMouse: undefined | string;
1645
+ contextMenuFeature: undefined | Feature;
1646
+ } & {
1647
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1648
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
1649
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
1650
+ } & {
1651
+ readonly renderDelay: number;
1652
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
1653
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
1654
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
1655
+ readonly selectedFeatureId: string | undefined;
1656
+ readonly featureWidgetType: {
1657
+ type: string;
1658
+ id: string;
1659
+ };
1660
+ } & {
1661
+ readonly showTooltipsEnabled: boolean;
1662
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
1663
+ readonly featureUnderMouse: Feature | undefined;
1664
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
1665
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
1666
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
1667
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1668
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
1669
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
1670
+ } & {
1671
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
1672
+ deleteBlock(key: string): void;
1673
+ selectFeature(feature: Feature): void;
1674
+ navToFeature(feature: Feature): void;
1675
+ clearFeatureSelection(): void;
1676
+ setFeatureIdUnderMouse(feature?: string): void;
1677
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
1678
+ setContextMenuFeature(feature?: Feature): void;
1679
+ setMouseoverExtraInformation(extra?: string): void;
1680
+ setShowLegend(s: boolean): void;
1681
+ setShowTooltips(arg: boolean): void;
1682
+ } & {
1683
+ reload(): Promise<void>;
1684
+ } & {
1685
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1686
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
1687
+ } & {
1688
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1689
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1690
+ renderingProps(): {
1691
+ displayModel: {
1692
+ id: string;
1693
+ type: string;
1694
+ rpcDriverName: string | undefined;
1695
+ heightPreConfig: number | undefined;
1696
+ userBpPerPxLimit: number | undefined;
1697
+ userByteSizeLimit: number | undefined;
1698
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
1699
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1700
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1701
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1702
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1703
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1704
+ }, {
1705
+ stopToken: StopToken | undefined;
1706
+ filled: boolean;
1707
+ reactElement: React.ReactElement | undefined;
1708
+ features: Map<string, Feature> | undefined;
1709
+ layout: any;
1710
+ blockStatusMessage: string;
1711
+ error: unknown;
1712
+ message: string | undefined;
1713
+ maxHeightReached: boolean;
1714
+ ReactComponent: ({ model, }: {
1715
+ model: {
1716
+ error?: unknown;
1717
+ reload: () => void;
1718
+ message?: React.ReactNode;
1719
+ statusMessage?: string;
1720
+ reactElement?: React.ReactElement;
1721
+ isRenderingPending?: boolean;
1722
+ };
1723
+ }) => import("react/jsx-runtime").JSX.Element;
1724
+ renderProps: any;
1725
+ renderArgs: Record<string, unknown> | undefined;
1726
+ isRenderingPending: boolean;
1727
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1728
+ } & {
1729
+ doReload(): void;
1730
+ setStatusMessage(message: string): void;
1731
+ setLoading(newStopToken: StopToken): void;
1732
+ setMessage(messageText: string): void;
1733
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1734
+ setError(error: unknown): void;
1735
+ reload(): void;
1736
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1737
+ beforeDestroy(): void;
1738
+ } & {
1739
+ readonly statusMessage: any;
1740
+ } & {
1741
+ afterAttach(): void;
1742
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
1743
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1744
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
1745
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
1746
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1747
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
1748
+ }, {
1749
+ stopToken: StopToken | undefined;
1750
+ filled: boolean;
1751
+ reactElement: React.ReactElement | undefined;
1752
+ features: Map<string, Feature> | undefined;
1753
+ layout: any;
1754
+ blockStatusMessage: string;
1755
+ error: unknown;
1756
+ message: string | undefined;
1757
+ maxHeightReached: boolean;
1758
+ ReactComponent: ({ model, }: {
1759
+ model: {
1760
+ error?: unknown;
1761
+ reload: () => void;
1762
+ message?: React.ReactNode;
1763
+ statusMessage?: string;
1764
+ reactElement?: React.ReactElement;
1765
+ isRenderingPending?: boolean;
1766
+ };
1767
+ }) => import("react/jsx-runtime").JSX.Element;
1768
+ renderProps: any;
1769
+ renderArgs: Record<string, unknown> | undefined;
1770
+ isRenderingPending: boolean;
1771
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
1772
+ } & {
1773
+ doReload(): void;
1774
+ setStatusMessage(message: string): void;
1775
+ setLoading(newStopToken: StopToken): void;
1776
+ setMessage(messageText: string): void;
1777
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
1778
+ setError(error: unknown): void;
1779
+ reload(): void;
1780
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
1781
+ beforeDestroy(): void;
1782
+ } & {
1783
+ readonly statusMessage: any;
1784
+ } & {
1785
+ afterAttach(): void;
1786
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
1787
+ configuration: {
1788
+ [x: string]: any;
1789
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1790
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1791
+ [x: string]: any;
1792
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1793
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
1794
+ [x: string]: any;
1795
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1796
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
1797
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
1798
+ maxFeatureScreenDensity: {
1799
+ type: string;
1800
+ description: string;
1801
+ defaultValue: number;
1802
+ };
1803
+ fetchSizeLimit: {
1804
+ type: string;
1805
+ defaultValue: number;
1806
+ description: string;
1807
+ };
1808
+ height: {
1809
+ type: string;
1810
+ defaultValue: number;
1811
+ description: string;
1812
+ };
1813
+ mouseover: {
1814
+ type: string;
1815
+ description: string;
1816
+ defaultValue: string;
1817
+ contextVariable: string[];
1818
+ };
1819
+ jexlFilters: {
1820
+ type: string;
1821
+ description: string;
1822
+ defaultValue: never[];
1823
+ };
1824
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
1825
+ showLegend: boolean | undefined;
1826
+ showTooltips: boolean | undefined;
1827
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1828
+ rendererTypeName: string;
1829
+ error: unknown;
1830
+ statusMessage: string | undefined;
1831
+ } & {
1832
+ readonly RenderingComponent: React.FC<{
1833
+ model: {
1834
+ id: string;
1835
+ type: string;
1836
+ rpcDriverName: string | undefined;
1837
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1838
+ rendererTypeName: string;
1839
+ error: unknown;
1840
+ statusMessage: string | undefined;
1841
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1842
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1843
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1844
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1845
+ }, {
1846
+ rendererTypeName: string;
1847
+ error: unknown;
1848
+ statusMessage: string | undefined;
1849
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1850
+ onHorizontalScroll?: () => void;
1851
+ blockState?: Record<string, any>;
1852
+ }>;
1853
+ readonly DisplayBlurb: React.FC<{
1854
+ model: {
1855
+ id: string;
1856
+ type: string;
1857
+ rpcDriverName: string | undefined;
1858
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1859
+ rendererTypeName: string;
1860
+ error: unknown;
1861
+ statusMessage: string | undefined;
1862
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1863
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1864
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1865
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1866
+ }, {
1867
+ rendererTypeName: string;
1868
+ error: unknown;
1869
+ statusMessage: string | undefined;
1870
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1871
+ }> | null;
1872
+ readonly adapterConfig: any;
1873
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1874
+ readonly isMinimized: boolean;
1875
+ readonly parentDisplay: any;
1876
+ readonly effectiveRpcDriverName: any;
1877
+ } & {
1878
+ renderProps(): any;
1879
+ renderingProps(): {
1880
+ displayModel: {
1881
+ id: string;
1882
+ type: string;
1883
+ rpcDriverName: string | undefined;
1884
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1885
+ rendererTypeName: string;
1886
+ error: unknown;
1887
+ statusMessage: string | undefined;
1888
+ } & {
1889
+ readonly RenderingComponent: React.FC<{
1890
+ model: {
1891
+ id: string;
1892
+ type: string;
1893
+ rpcDriverName: string | undefined;
1894
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1895
+ rendererTypeName: string;
1896
+ error: unknown;
1897
+ statusMessage: string | undefined;
1898
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1899
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1900
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1901
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1902
+ }, {
1903
+ rendererTypeName: string;
1904
+ error: unknown;
1905
+ statusMessage: string | undefined;
1906
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1907
+ onHorizontalScroll?: () => void;
1908
+ blockState?: Record<string, any>;
1909
+ }>;
1910
+ readonly DisplayBlurb: React.FC<{
1911
+ model: {
1912
+ id: string;
1913
+ type: string;
1914
+ rpcDriverName: string | undefined;
1915
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1916
+ rendererTypeName: string;
1917
+ error: unknown;
1918
+ statusMessage: string | undefined;
1919
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1920
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1921
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1922
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1923
+ }, {
1924
+ rendererTypeName: string;
1925
+ error: unknown;
1926
+ statusMessage: string | undefined;
1927
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1928
+ }> | null;
1929
+ readonly adapterConfig: any;
1930
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1931
+ readonly isMinimized: boolean;
1932
+ readonly parentDisplay: any;
1933
+ readonly effectiveRpcDriverName: any;
1934
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1935
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1936
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1937
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1938
+ }, {
1939
+ rendererTypeName: string;
1940
+ error: unknown;
1941
+ statusMessage: string | undefined;
1942
+ } & {
1943
+ readonly RenderingComponent: React.FC<{
1944
+ model: {
1945
+ id: string;
1946
+ type: string;
1947
+ rpcDriverName: string | undefined;
1948
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1949
+ rendererTypeName: string;
1950
+ error: unknown;
1951
+ statusMessage: string | undefined;
1952
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1953
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1954
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1955
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1956
+ }, {
1957
+ rendererTypeName: string;
1958
+ error: unknown;
1959
+ statusMessage: string | undefined;
1960
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1961
+ onHorizontalScroll?: () => void;
1962
+ blockState?: Record<string, any>;
1963
+ }>;
1964
+ readonly DisplayBlurb: React.FC<{
1965
+ model: {
1966
+ id: string;
1967
+ type: string;
1968
+ rpcDriverName: string | undefined;
1969
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
1970
+ rendererTypeName: string;
1971
+ error: unknown;
1972
+ statusMessage: string | undefined;
1973
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
1974
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
1975
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
1976
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1977
+ }, {
1978
+ rendererTypeName: string;
1979
+ error: unknown;
1980
+ statusMessage: string | undefined;
1981
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1982
+ }> | null;
1983
+ readonly adapterConfig: any;
1984
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
1985
+ readonly isMinimized: boolean;
1986
+ readonly parentDisplay: any;
1987
+ readonly effectiveRpcDriverName: any;
1988
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
1989
+ };
1990
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
1991
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
1992
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
1993
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
1994
+ regionCannotBeRendered(): null;
1995
+ } & {
1996
+ setStatusMessage(arg?: string): void;
1997
+ setError(error?: unknown): void;
1998
+ setRpcDriverName(rpcDriverName: string): void;
1999
+ reload(): void;
2000
+ } & {
2001
+ scrollTop: number;
2002
+ } & {
2003
+ readonly height: number;
2004
+ } & {
2005
+ setScrollTop(scrollTop: number): void;
2006
+ setHeight(displayHeight: number): number;
2007
+ resizeHeight(distance: number): number;
2008
+ } & {
2009
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2010
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2011
+ currStatsBpPerPx: number;
2012
+ } & {
2013
+ readonly currentBytesRequested: number;
2014
+ readonly currentFeatureScreenDensity: number;
2015
+ readonly maxFeatureScreenDensity: any;
2016
+ readonly featureDensityStatsReady: boolean;
2017
+ readonly maxAllowableBytes: number;
2018
+ } & {
2019
+ afterAttach(): void;
2020
+ } & {
2021
+ setCurrStatsBpPerPx(n: number): void;
2022
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2023
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2024
+ setFeatureDensityStatsP(arg: any): void;
2025
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2026
+ clearFeatureDensityStats(): void;
2027
+ } & {
2028
+ readonly regionTooLarge: boolean;
2029
+ readonly regionTooLargeReason: string;
2030
+ } & {
2031
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2032
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2033
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2034
+ } & {
2035
+ mouseoverExtraInformation: string | undefined;
2036
+ featureIdUnderMouse: undefined | string;
2037
+ subfeatureIdUnderMouse: undefined | string;
2038
+ contextMenuFeature: undefined | Feature;
2039
+ } & {
2040
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2041
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2042
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2043
+ } & {
2044
+ readonly renderDelay: number;
2045
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2046
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
2047
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2048
+ readonly selectedFeatureId: string | undefined;
2049
+ readonly featureWidgetType: {
2050
+ type: string;
2051
+ id: string;
2052
+ };
2053
+ } & {
2054
+ readonly showTooltipsEnabled: boolean;
2055
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
2056
+ readonly featureUnderMouse: Feature | undefined;
2057
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
2058
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2059
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2060
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2061
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2062
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2063
+ } & {
2064
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2065
+ deleteBlock(key: string): void;
2066
+ selectFeature(feature: Feature): void;
2067
+ navToFeature(feature: Feature): void;
2068
+ clearFeatureSelection(): void;
2069
+ setFeatureIdUnderMouse(feature?: string): void;
2070
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2071
+ setContextMenuFeature(feature?: Feature): void;
2072
+ setMouseoverExtraInformation(extra?: string): void;
2073
+ setShowLegend(s: boolean): void;
2074
+ setShowTooltips(arg: boolean): void;
2075
+ } & {
2076
+ reload(): Promise<void>;
2077
+ } & {
2078
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2079
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2080
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2081
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2082
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2083
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2084
+ } & {
2085
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2086
+ } & {
2087
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2088
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2089
+ } & {
2090
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2091
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2092
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2093
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2094
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2095
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2096
+ }, {
2097
+ stopToken: StopToken | undefined;
2098
+ filled: boolean;
2099
+ reactElement: React.ReactElement | undefined;
2100
+ features: Map<string, Feature> | undefined;
2101
+ layout: any;
2102
+ blockStatusMessage: string;
2103
+ error: unknown;
2104
+ message: string | undefined;
2105
+ maxHeightReached: boolean;
2106
+ ReactComponent: ({ model, }: {
2107
+ model: {
2108
+ error?: unknown;
2109
+ reload: () => void;
2110
+ message?: React.ReactNode;
2111
+ statusMessage?: string;
2112
+ reactElement?: React.ReactElement;
2113
+ isRenderingPending?: boolean;
2114
+ };
2115
+ }) => import("react/jsx-runtime").JSX.Element;
2116
+ renderProps: any;
2117
+ renderArgs: Record<string, unknown> | undefined;
2118
+ isRenderingPending: boolean;
2119
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2120
+ } & {
2121
+ doReload(): void;
2122
+ setStatusMessage(message: string): void;
2123
+ setLoading(newStopToken: StopToken): void;
2124
+ setMessage(messageText: string): void;
2125
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2126
+ setError(error: unknown): void;
2127
+ reload(): void;
2128
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2129
+ beforeDestroy(): void;
2130
+ } & {
2131
+ readonly statusMessage: any;
2132
+ } & {
2133
+ afterAttach(): void;
2134
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2135
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2136
+ maxFeatureScreenDensity: {
2137
+ type: string;
2138
+ description: string;
2139
+ defaultValue: number;
2140
+ };
2141
+ fetchSizeLimit: {
2142
+ type: string;
2143
+ defaultValue: number;
2144
+ description: string;
2145
+ };
2146
+ height: {
2147
+ type: string;
2148
+ defaultValue: number;
2149
+ description: string;
2150
+ };
2151
+ mouseover: {
2152
+ type: string;
2153
+ description: string;
2154
+ defaultValue: string;
2155
+ contextVariable: string[];
2156
+ };
2157
+ jexlFilters: {
2158
+ type: string;
2159
+ description: string;
2160
+ defaultValue: never[];
2161
+ };
2162
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2163
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2164
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2165
+ }, {
2166
+ rendererTypeName: string;
2167
+ error: unknown;
2168
+ statusMessage: string | undefined;
2169
+ } & {
2170
+ readonly RenderingComponent: React.FC<{
2171
+ model: {
2172
+ id: string;
2173
+ type: string;
2174
+ rpcDriverName: string | undefined;
2175
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2176
+ rendererTypeName: string;
2177
+ error: unknown;
2178
+ statusMessage: string | undefined;
2179
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2180
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2181
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2182
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2183
+ }, {
2184
+ rendererTypeName: string;
2185
+ error: unknown;
2186
+ statusMessage: string | undefined;
2187
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2188
+ onHorizontalScroll?: () => void;
2189
+ blockState?: Record<string, any>;
2190
+ }>;
2191
+ readonly DisplayBlurb: React.FC<{
2192
+ model: {
2193
+ id: string;
2194
+ type: string;
2195
+ rpcDriverName: string | undefined;
2196
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2197
+ rendererTypeName: string;
2198
+ error: unknown;
2199
+ statusMessage: string | undefined;
2200
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2201
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2202
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2203
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2204
+ }, {
2205
+ rendererTypeName: string;
2206
+ error: unknown;
2207
+ statusMessage: string | undefined;
2208
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2209
+ }> | null;
2210
+ readonly adapterConfig: any;
2211
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2212
+ readonly isMinimized: boolean;
2213
+ readonly parentDisplay: any;
2214
+ readonly effectiveRpcDriverName: any;
2215
+ } & {
2216
+ renderProps(): any;
2217
+ renderingProps(): {
2218
+ displayModel: {
2219
+ id: string;
2220
+ type: string;
2221
+ rpcDriverName: string | undefined;
2222
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2223
+ rendererTypeName: string;
2224
+ error: unknown;
2225
+ statusMessage: string | undefined;
2226
+ } & {
2227
+ readonly RenderingComponent: React.FC<{
2228
+ model: {
2229
+ id: string;
2230
+ type: string;
2231
+ rpcDriverName: string | undefined;
2232
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2233
+ rendererTypeName: string;
2234
+ error: unknown;
2235
+ statusMessage: string | undefined;
2236
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2237
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2238
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2239
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2240
+ }, {
2241
+ rendererTypeName: string;
2242
+ error: unknown;
2243
+ statusMessage: string | undefined;
2244
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2245
+ onHorizontalScroll?: () => void;
2246
+ blockState?: Record<string, any>;
2247
+ }>;
2248
+ readonly DisplayBlurb: React.FC<{
2249
+ model: {
2250
+ id: string;
2251
+ type: string;
2252
+ rpcDriverName: string | undefined;
2253
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2254
+ rendererTypeName: string;
2255
+ error: unknown;
2256
+ statusMessage: string | undefined;
2257
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2258
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2259
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2260
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2261
+ }, {
2262
+ rendererTypeName: string;
2263
+ error: unknown;
2264
+ statusMessage: string | undefined;
2265
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2266
+ }> | null;
2267
+ readonly adapterConfig: any;
2268
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2269
+ readonly isMinimized: boolean;
2270
+ readonly parentDisplay: any;
2271
+ readonly effectiveRpcDriverName: any;
2272
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2273
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2274
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2275
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2276
+ }, {
2277
+ rendererTypeName: string;
2278
+ error: unknown;
2279
+ statusMessage: string | undefined;
2280
+ } & {
2281
+ readonly RenderingComponent: React.FC<{
2282
+ model: {
2283
+ id: string;
2284
+ type: string;
2285
+ rpcDriverName: string | undefined;
2286
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2287
+ rendererTypeName: string;
2288
+ error: unknown;
2289
+ statusMessage: string | undefined;
2290
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2291
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2292
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2293
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2294
+ }, {
2295
+ rendererTypeName: string;
2296
+ error: unknown;
2297
+ statusMessage: string | undefined;
2298
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2299
+ onHorizontalScroll?: () => void;
2300
+ blockState?: Record<string, any>;
2301
+ }>;
2302
+ readonly DisplayBlurb: React.FC<{
2303
+ model: {
2304
+ id: string;
2305
+ type: string;
2306
+ rpcDriverName: string | undefined;
2307
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2308
+ rendererTypeName: string;
2309
+ error: unknown;
2310
+ statusMessage: string | undefined;
2311
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2312
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2313
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2314
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2315
+ }, {
2316
+ rendererTypeName: string;
2317
+ error: unknown;
2318
+ statusMessage: string | undefined;
2319
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2320
+ }> | null;
2321
+ readonly adapterConfig: any;
2322
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2323
+ readonly isMinimized: boolean;
2324
+ readonly parentDisplay: any;
2325
+ readonly effectiveRpcDriverName: any;
2326
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2327
+ };
2328
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2329
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2330
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2331
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2332
+ regionCannotBeRendered(): null;
2333
+ } & {
2334
+ setStatusMessage(arg?: string): void;
2335
+ setError(error?: unknown): void;
2336
+ setRpcDriverName(rpcDriverName: string): void;
2337
+ reload(): void;
2338
+ } & {
2339
+ scrollTop: number;
2340
+ } & {
2341
+ readonly height: number;
2342
+ } & {
2343
+ setScrollTop(scrollTop: number): void;
2344
+ setHeight(displayHeight: number): number;
2345
+ resizeHeight(distance: number): number;
2346
+ } & {
2347
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2348
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2349
+ currStatsBpPerPx: number;
2350
+ } & {
2351
+ readonly currentBytesRequested: number;
2352
+ readonly currentFeatureScreenDensity: number;
2353
+ readonly maxFeatureScreenDensity: any;
2354
+ readonly featureDensityStatsReady: boolean;
2355
+ readonly maxAllowableBytes: number;
2356
+ } & {
2357
+ afterAttach(): void;
2358
+ } & {
2359
+ setCurrStatsBpPerPx(n: number): void;
2360
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2361
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2362
+ setFeatureDensityStatsP(arg: any): void;
2363
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2364
+ clearFeatureDensityStats(): void;
2365
+ } & {
2366
+ readonly regionTooLarge: boolean;
2367
+ readonly regionTooLargeReason: string;
2368
+ } & {
2369
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2370
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2371
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2372
+ } & {
2373
+ mouseoverExtraInformation: string | undefined;
2374
+ featureIdUnderMouse: undefined | string;
2375
+ subfeatureIdUnderMouse: undefined | string;
2376
+ contextMenuFeature: undefined | Feature;
2377
+ } & {
2378
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2379
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2380
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2381
+ } & {
2382
+ readonly renderDelay: number;
2383
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2384
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
2385
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2386
+ readonly selectedFeatureId: string | undefined;
2387
+ readonly featureWidgetType: {
2388
+ type: string;
2389
+ id: string;
2390
+ };
2391
+ } & {
2392
+ readonly showTooltipsEnabled: boolean;
2393
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
2394
+ readonly featureUnderMouse: Feature | undefined;
2395
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
2396
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2397
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2398
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2399
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2400
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2401
+ } & {
2402
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2403
+ deleteBlock(key: string): void;
2404
+ selectFeature(feature: Feature): void;
2405
+ navToFeature(feature: Feature): void;
2406
+ clearFeatureSelection(): void;
2407
+ setFeatureIdUnderMouse(feature?: string): void;
2408
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2409
+ setContextMenuFeature(feature?: Feature): void;
2410
+ setMouseoverExtraInformation(extra?: string): void;
2411
+ setShowLegend(s: boolean): void;
2412
+ setShowTooltips(arg: boolean): void;
2413
+ } & {
2414
+ reload(): Promise<void>;
2415
+ } & {
2416
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2417
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2418
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2419
+ onMouseMove(_: unknown, featureId?: string): void;
2420
+ onMouseLeave(_: unknown): void;
2421
+ onContextMenu(_: unknown): void;
2422
+ };
2423
+ renderProps(): any;
2424
+ } & {
2425
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
2426
+ afterAttach(): void;
2427
+ } & {
2428
+ readonly rendererConfig: Omit<any, symbol>;
2429
+ readonly rendererTypeName: any;
2430
+ } & {
2431
+ renderProps(): any;
2432
+ } & {
2433
+ sourcesLoadingStopToken: StopToken | undefined;
2434
+ simplifiedFeaturesStopToken: StopToken | undefined;
2435
+ featureUnderMouseVolatile: Feature | undefined;
2436
+ sourcesVolatile: Source[] | undefined;
2437
+ colorByApplied: boolean;
2438
+ featuresVolatile: Feature[] | undefined;
2439
+ hasPhased: boolean;
2440
+ sampleInfo: undefined | Record<string, SampleInfo>;
2441
+ hoveredGenotype: {
2442
+ genotype: string;
2443
+ name: string;
2444
+ } | undefined;
2445
+ hoveredTreeNode: HoveredTreeNode | undefined;
2446
+ treeCanvas: HTMLCanvasElement | undefined;
2447
+ mouseoverCanvas: HTMLCanvasElement | undefined;
2448
+ } & {
2449
+ readonly renderingMode: string;
2450
+ } & {
2451
+ setJexlFilters(f?: string[]): void;
2452
+ setRowHeight(arg: number | "auto"): void;
2453
+ setHoveredGenotype(arg?: {
2454
+ genotype: string;
2455
+ name: string;
2456
+ }): void;
2457
+ setHoveredTreeNode(node?: HoveredTreeNode): void;
2458
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
2459
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
2460
+ setTreeAreaWidth(width: number): void;
2461
+ setFeatures(f: Feature[]): void;
2462
+ setColorByApplied(value: boolean): void;
2463
+ setLayout(layout: Source[], clearTree?: boolean): void;
2464
+ clearLayout(): void;
2465
+ setClusterTree(tree?: string): void;
2466
+ setSourcesLoading(token: StopToken): void;
2467
+ setSimplifiedFeaturesLoading(token: StopToken): void;
2468
+ setSources(sources: Source[]): void;
2469
+ setMafFilter(arg: number): void;
2470
+ setShowSidebarLabels(arg: boolean): void;
2471
+ setShowTree(arg: boolean): void;
2472
+ setPhasedMode(arg: string): void;
2473
+ setAutoHeight(auto: boolean): void;
2474
+ setHasPhased(arg: boolean): void;
2475
+ setSampleInfo(arg: Record<string, SampleInfo>): void;
2476
+ setReferenceDrawingMode(arg: string): void;
2477
+ } & {
2478
+ readonly autoHeight: boolean;
2479
+ readonly minorAlleleFrequencyFilter: any;
2480
+ readonly showSidebarLabels: any;
2481
+ readonly showTree: any;
2482
+ readonly referenceDrawingMode: string;
2483
+ activeFilters(): any;
2484
+ readonly sourcesWithoutLayout: Source[] | undefined;
2485
+ readonly sources: Source[] | undefined;
2486
+ readonly root: any;
2487
+ } & {
2488
+ readonly sourceMap: {
2489
+ [k: string]: Source;
2490
+ } | undefined;
2491
+ readonly availableHeight: number;
2492
+ readonly nrow: number;
2493
+ readonly rowHeight: number;
2494
+ readonly hierarchy: any;
2495
+ adapterProps(): any;
2496
+ } & {
2497
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
2498
+ label: string;
2499
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2500
+ muiName: string;
2501
+ };
2502
+ type: string;
2503
+ subMenu: ({
2504
+ label: string;
2505
+ type: string;
2506
+ checked: any;
2507
+ onClick: () => void;
2508
+ disabled?: undefined;
2509
+ helpText?: undefined;
2510
+ } | {
2511
+ label: string;
2512
+ type: string;
2513
+ checked: any;
2514
+ disabled: boolean;
2515
+ onClick: () => void;
2516
+ helpText?: undefined;
2517
+ } | {
2518
+ label: string;
2519
+ helpText: string;
2520
+ type: string;
2521
+ checked: boolean;
2522
+ onClick: () => void;
2523
+ disabled?: undefined;
2524
+ })[];
2525
+ onClick?: undefined;
2526
+ } | {
2527
+ label: string;
2528
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2529
+ muiName: string;
2530
+ };
2531
+ subMenu: ({
2532
+ label: string;
2533
+ disabled: boolean;
2534
+ onClick: () => void;
2535
+ type?: undefined;
2536
+ checked?: undefined;
2537
+ } | {
2538
+ label: string;
2539
+ type: string;
2540
+ checked: boolean;
2541
+ onClick: () => void;
2542
+ disabled?: undefined;
2543
+ })[];
2544
+ type?: undefined;
2545
+ onClick?: undefined;
2546
+ } | {
2547
+ label: string;
2548
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2549
+ muiName: string;
2550
+ };
2551
+ subMenu: ({
2552
+ label: string;
2553
+ helpText: string;
2554
+ type: string;
2555
+ checked: boolean;
2556
+ onClick: () => void;
2557
+ disabled?: undefined;
2558
+ } | {
2559
+ label: string;
2560
+ helpText: string;
2561
+ disabled: boolean;
2562
+ checked: boolean;
2563
+ type: string;
2564
+ onClick: () => void;
2565
+ })[];
2566
+ type?: undefined;
2567
+ onClick?: undefined;
2568
+ } | {
2569
+ label: string;
2570
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2571
+ muiName: string;
2572
+ };
2573
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
2574
+ type?: undefined;
2575
+ onClick?: undefined;
2576
+ } | {
2577
+ label: string;
2578
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
2579
+ muiName: string;
2580
+ };
2581
+ onClick: () => void;
2582
+ type?: undefined;
2583
+ subMenu?: undefined;
2584
+ })[];
2585
+ } & {
2586
+ readonly canDisplayLabels: any;
2587
+ readonly totalHeight: number;
2588
+ readonly featuresReady: boolean;
2589
+ getPortableSettings(): {
2590
+ minorAlleleFrequencyFilter: any;
2591
+ showSidebarLabelsSetting: boolean | undefined;
2592
+ showTree: any;
2593
+ renderingMode: string;
2594
+ lengthCutoffFilter: number;
2595
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
2596
+ referenceDrawingMode: string;
2597
+ clusterTree: string | undefined;
2598
+ treeAreaWidth: number;
2599
+ layout: Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>>;
2600
+ height: number;
2601
+ };
2602
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2603
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2604
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2605
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2606
+ } & {
2607
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2608
+ } & {
2609
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2610
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2611
+ } & {
2612
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
2613
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2614
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2615
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2616
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2617
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2618
+ }, {
2619
+ stopToken: StopToken | undefined;
2620
+ filled: boolean;
2621
+ reactElement: React.ReactElement | undefined;
2622
+ features: Map<string, Feature> | undefined;
2623
+ layout: any;
2624
+ blockStatusMessage: string;
2625
+ error: unknown;
2626
+ message: string | undefined;
2627
+ maxHeightReached: boolean;
2628
+ ReactComponent: ({ model, }: {
2629
+ model: {
2630
+ error?: unknown;
2631
+ reload: () => void;
2632
+ message?: React.ReactNode;
2633
+ statusMessage?: string;
2634
+ reactElement?: React.ReactElement;
2635
+ isRenderingPending?: boolean;
2636
+ };
2637
+ }) => import("react/jsx-runtime").JSX.Element;
2638
+ renderProps: any;
2639
+ renderArgs: Record<string, unknown> | undefined;
2640
+ isRenderingPending: boolean;
2641
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2642
+ } & {
2643
+ doReload(): void;
2644
+ setStatusMessage(message: string): void;
2645
+ setLoading(newStopToken: StopToken): void;
2646
+ setMessage(messageText: string): void;
2647
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
2648
+ setError(error: unknown): void;
2649
+ reload(): void;
2650
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
2651
+ beforeDestroy(): void;
2652
+ } & {
2653
+ readonly statusMessage: any;
2654
+ } & {
2655
+ afterAttach(): void;
2656
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2657
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
2658
+ maxFeatureScreenDensity: {
2659
+ type: string;
2660
+ description: string;
2661
+ defaultValue: number;
2662
+ };
2663
+ fetchSizeLimit: {
2664
+ type: string;
2665
+ defaultValue: number;
2666
+ description: string;
2667
+ };
2668
+ height: {
2669
+ type: string;
2670
+ defaultValue: number;
2671
+ description: string;
2672
+ };
2673
+ mouseover: {
2674
+ type: string;
2675
+ description: string;
2676
+ defaultValue: string;
2677
+ contextVariable: string[];
2678
+ };
2679
+ jexlFilters: {
2680
+ type: string;
2681
+ description: string;
2682
+ defaultValue: never[];
2683
+ };
2684
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
2685
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2686
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2687
+ } & {
2688
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearBareDisplay">;
2689
+ configuration: AnyConfigurationSchemaType;
2690
+ } & {
2691
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
2692
+ layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
2693
+ configuration: AnyConfigurationSchemaType;
2694
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
2695
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2696
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
2697
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2698
+ rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
2699
+ lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2700
+ jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
2701
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2702
+ clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2703
+ treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2704
+ lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
2705
+ }, {
2706
+ rendererTypeName: string;
2707
+ error: unknown;
2708
+ statusMessage: string | undefined;
2709
+ } & {
2710
+ readonly RenderingComponent: React.FC<{
2711
+ model: {
2712
+ id: string;
2713
+ type: string;
2714
+ rpcDriverName: string | undefined;
2715
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2716
+ rendererTypeName: string;
2717
+ error: unknown;
2718
+ statusMessage: string | undefined;
2719
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2720
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2721
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2722
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2723
+ }, {
2724
+ rendererTypeName: string;
2725
+ error: unknown;
2726
+ statusMessage: string | undefined;
2727
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2728
+ onHorizontalScroll?: () => void;
2729
+ blockState?: Record<string, any>;
2730
+ }>;
2731
+ readonly DisplayBlurb: React.FC<{
2732
+ model: {
2733
+ id: string;
2734
+ type: string;
2735
+ rpcDriverName: string | undefined;
2736
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2737
+ rendererTypeName: string;
2738
+ error: unknown;
2739
+ statusMessage: string | undefined;
2740
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2741
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2742
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2743
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2744
+ }, {
2745
+ rendererTypeName: string;
2746
+ error: unknown;
2747
+ statusMessage: string | undefined;
2748
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2749
+ }> | null;
2750
+ readonly adapterConfig: any;
2751
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2752
+ readonly isMinimized: boolean;
2753
+ readonly parentDisplay: any;
2754
+ readonly effectiveRpcDriverName: any;
2755
+ } & {
2756
+ renderProps(): any;
2757
+ renderingProps(): {
2758
+ displayModel: {
2759
+ id: string;
2760
+ type: string;
2761
+ rpcDriverName: string | undefined;
2762
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2763
+ rendererTypeName: string;
2764
+ error: unknown;
2765
+ statusMessage: string | undefined;
2766
+ } & {
2767
+ readonly RenderingComponent: React.FC<{
2768
+ model: {
2769
+ id: string;
2770
+ type: string;
2771
+ rpcDriverName: string | undefined;
2772
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2773
+ rendererTypeName: string;
2774
+ error: unknown;
2775
+ statusMessage: string | undefined;
2776
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2777
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2778
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2779
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2780
+ }, {
2781
+ rendererTypeName: string;
2782
+ error: unknown;
2783
+ statusMessage: string | undefined;
2784
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2785
+ onHorizontalScroll?: () => void;
2786
+ blockState?: Record<string, any>;
2787
+ }>;
2788
+ readonly DisplayBlurb: React.FC<{
2789
+ model: {
2790
+ id: string;
2791
+ type: string;
2792
+ rpcDriverName: string | undefined;
2793
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2794
+ rendererTypeName: string;
2795
+ error: unknown;
2796
+ statusMessage: string | undefined;
2797
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2798
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2799
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2800
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2801
+ }, {
2802
+ rendererTypeName: string;
2803
+ error: unknown;
2804
+ statusMessage: string | undefined;
2805
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2806
+ }> | null;
2807
+ readonly adapterConfig: any;
2808
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2809
+ readonly isMinimized: boolean;
2810
+ readonly parentDisplay: any;
2811
+ readonly effectiveRpcDriverName: any;
2812
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2813
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2814
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2815
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2816
+ }, {
2817
+ rendererTypeName: string;
2818
+ error: unknown;
2819
+ statusMessage: string | undefined;
2820
+ } & {
2821
+ readonly RenderingComponent: React.FC<{
2822
+ model: {
2823
+ id: string;
2824
+ type: string;
2825
+ rpcDriverName: string | undefined;
2826
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2827
+ rendererTypeName: string;
2828
+ error: unknown;
2829
+ statusMessage: string | undefined;
2830
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2831
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2832
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2833
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2834
+ }, {
2835
+ rendererTypeName: string;
2836
+ error: unknown;
2837
+ statusMessage: string | undefined;
2838
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2839
+ onHorizontalScroll?: () => void;
2840
+ blockState?: Record<string, any>;
2841
+ }>;
2842
+ readonly DisplayBlurb: React.FC<{
2843
+ model: {
2844
+ id: string;
2845
+ type: string;
2846
+ rpcDriverName: string | undefined;
2847
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
2848
+ rendererTypeName: string;
2849
+ error: unknown;
2850
+ statusMessage: string | undefined;
2851
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
2852
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
2853
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2854
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
2855
+ }, {
2856
+ rendererTypeName: string;
2857
+ error: unknown;
2858
+ statusMessage: string | undefined;
2859
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2860
+ }> | null;
2861
+ readonly adapterConfig: any;
2862
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
2863
+ readonly isMinimized: boolean;
2864
+ readonly parentDisplay: any;
2865
+ readonly effectiveRpcDriverName: any;
2866
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
2867
+ };
2868
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
2869
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2870
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2871
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
2872
+ regionCannotBeRendered(): null;
2873
+ } & {
2874
+ setStatusMessage(arg?: string): void;
2875
+ setError(error?: unknown): void;
2876
+ setRpcDriverName(rpcDriverName: string): void;
2877
+ reload(): void;
2878
+ } & {
2879
+ scrollTop: number;
2880
+ } & {
2881
+ readonly height: number;
2882
+ } & {
2883
+ setScrollTop(scrollTop: number): void;
2884
+ setHeight(displayHeight: number): number;
2885
+ resizeHeight(distance: number): number;
2886
+ } & {
2887
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2888
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
2889
+ currStatsBpPerPx: number;
2890
+ } & {
2891
+ readonly currentBytesRequested: number;
2892
+ readonly currentFeatureScreenDensity: number;
2893
+ readonly maxFeatureScreenDensity: any;
2894
+ readonly featureDensityStatsReady: boolean;
2895
+ readonly maxAllowableBytes: number;
2896
+ } & {
2897
+ afterAttach(): void;
2898
+ } & {
2899
+ setCurrStatsBpPerPx(n: number): void;
2900
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2901
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
2902
+ setFeatureDensityStatsP(arg: any): void;
2903
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
2904
+ clearFeatureDensityStats(): void;
2905
+ } & {
2906
+ readonly regionTooLarge: boolean;
2907
+ readonly regionTooLargeReason: string;
2908
+ } & {
2909
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
2910
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
2911
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
2912
+ } & {
2913
+ mouseoverExtraInformation: string | undefined;
2914
+ featureIdUnderMouse: undefined | string;
2915
+ subfeatureIdUnderMouse: undefined | string;
2916
+ contextMenuFeature: undefined | Feature;
2917
+ } & {
2918
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
2919
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
2920
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
2921
+ } & {
2922
+ readonly renderDelay: number;
2923
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
2924
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
2925
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
2926
+ readonly selectedFeatureId: string | undefined;
2927
+ readonly featureWidgetType: {
2928
+ type: string;
2929
+ id: string;
2930
+ };
2931
+ } & {
2932
+ readonly showTooltipsEnabled: boolean;
2933
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
2934
+ readonly featureUnderMouse: Feature | undefined;
2935
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
2936
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
2937
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
2938
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2939
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
2940
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
2941
+ } & {
2942
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
2943
+ deleteBlock(key: string): void;
2944
+ selectFeature(feature: Feature): void;
2945
+ navToFeature(feature: Feature): void;
2946
+ clearFeatureSelection(): void;
2947
+ setFeatureIdUnderMouse(feature?: string): void;
2948
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
2949
+ setContextMenuFeature(feature?: Feature): void;
2950
+ setMouseoverExtraInformation(extra?: string): void;
2951
+ setShowLegend(s: boolean): void;
2952
+ setShowTooltips(arg: boolean): void;
2953
+ } & {
2954
+ reload(): Promise<void>;
2955
+ } & {
2956
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2957
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
2958
+ } & {
2959
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2960
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
2961
+ renderingProps(): {
2962
+ displayModel: {
2963
+ id: string;
2964
+ type: string;
2965
+ rpcDriverName: string | undefined;
2966
+ heightPreConfig: number | undefined;
2967
+ userBpPerPxLimit: number | undefined;
2968
+ userByteSizeLimit: number | undefined;
2969
+ blockState: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IModelType<{
2970
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
2971
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
2972
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
2973
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2974
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
2975
+ }, {
2976
+ stopToken: StopToken | undefined;
2977
+ filled: boolean;
2978
+ reactElement: React.ReactElement | undefined;
2979
+ features: Map<string, Feature> | undefined;
2980
+ layout: any;
2981
+ blockStatusMessage: string;
2982
+ error: unknown;
2983
+ message: string | undefined;
2984
+ maxHeightReached: boolean;
2985
+ ReactComponent: ({ model, }: {
2986
+ model: {
2987
+ error?: unknown;
2988
+ reload: () => void;
2989
+ message?: React.ReactNode;
2990
+ statusMessage?: string;
2991
+ reactElement?: React.ReactElement;
2992
+ isRenderingPending?: boolean;
2993
+ };
2994
+ }) => import("react/jsx-runtime").JSX.Element;
2995
+ renderProps: any;
2996
+ renderArgs: Record<string, unknown> | undefined;
2997
+ isRenderingPending: boolean;
2998
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
2999
+ } & {
3000
+ doReload(): void;
3001
+ setStatusMessage(message: string): void;
3002
+ setLoading(newStopToken: StopToken): void;
3003
+ setMessage(messageText: string): void;
3004
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3005
+ setError(error: unknown): void;
3006
+ reload(): void;
3007
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3008
+ beforeDestroy(): void;
3009
+ } & {
3010
+ readonly statusMessage: any;
3011
+ } & {
3012
+ afterAttach(): void;
3013
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3014
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3015
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3016
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3017
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3018
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3019
+ }, {
3020
+ stopToken: StopToken | undefined;
3021
+ filled: boolean;
3022
+ reactElement: React.ReactElement | undefined;
3023
+ features: Map<string, Feature> | undefined;
3024
+ layout: any;
3025
+ blockStatusMessage: string;
3026
+ error: unknown;
3027
+ message: string | undefined;
3028
+ maxHeightReached: boolean;
3029
+ ReactComponent: ({ model, }: {
3030
+ model: {
3031
+ error?: unknown;
3032
+ reload: () => void;
3033
+ message?: React.ReactNode;
3034
+ statusMessage?: string;
3035
+ reactElement?: React.ReactElement;
3036
+ isRenderingPending?: boolean;
3037
+ };
3038
+ }) => import("react/jsx-runtime").JSX.Element;
3039
+ renderProps: any;
3040
+ renderArgs: Record<string, unknown> | undefined;
3041
+ isRenderingPending: boolean;
3042
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3043
+ } & {
3044
+ doReload(): void;
3045
+ setStatusMessage(message: string): void;
3046
+ setLoading(newStopToken: StopToken): void;
3047
+ setMessage(messageText: string): void;
3048
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3049
+ setError(error: unknown): void;
3050
+ reload(): void;
3051
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3052
+ beforeDestroy(): void;
3053
+ } & {
3054
+ readonly statusMessage: any;
3055
+ } & {
3056
+ afterAttach(): void;
3057
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
3058
+ configuration: {
3059
+ [x: string]: any;
3060
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3061
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3062
+ [x: string]: any;
3063
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3064
+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
3065
+ [x: string]: any;
3066
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3067
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
3068
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3069
+ maxFeatureScreenDensity: {
3070
+ type: string;
3071
+ description: string;
3072
+ defaultValue: number;
3073
+ };
3074
+ fetchSizeLimit: {
3075
+ type: string;
3076
+ defaultValue: number;
3077
+ description: string;
3078
+ };
3079
+ height: {
3080
+ type: string;
3081
+ defaultValue: number;
3082
+ description: string;
3083
+ };
3084
+ mouseover: {
3085
+ type: string;
3086
+ description: string;
3087
+ defaultValue: string;
3088
+ contextVariable: string[];
3089
+ };
3090
+ jexlFilters: {
3091
+ type: string;
3092
+ description: string;
3093
+ defaultValue: never[];
3094
+ };
3095
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>>;
3096
+ showLegend: boolean | undefined;
3097
+ showTooltips: boolean | undefined;
3098
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3099
+ rendererTypeName: string;
3100
+ error: unknown;
3101
+ statusMessage: string | undefined;
3102
+ } & {
3103
+ readonly RenderingComponent: React.FC<{
3104
+ model: {
3105
+ id: string;
3106
+ type: string;
3107
+ rpcDriverName: string | undefined;
3108
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3109
+ rendererTypeName: string;
3110
+ error: unknown;
3111
+ statusMessage: string | undefined;
3112
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3113
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3114
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3115
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3116
+ }, {
3117
+ rendererTypeName: string;
3118
+ error: unknown;
3119
+ statusMessage: string | undefined;
3120
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3121
+ onHorizontalScroll?: () => void;
3122
+ blockState?: Record<string, any>;
3123
+ }>;
3124
+ readonly DisplayBlurb: React.FC<{
3125
+ model: {
3126
+ id: string;
3127
+ type: string;
3128
+ rpcDriverName: string | undefined;
3129
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3130
+ rendererTypeName: string;
3131
+ error: unknown;
3132
+ statusMessage: string | undefined;
3133
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3134
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3135
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3136
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3137
+ }, {
3138
+ rendererTypeName: string;
3139
+ error: unknown;
3140
+ statusMessage: string | undefined;
3141
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3142
+ }> | null;
3143
+ readonly adapterConfig: any;
3144
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3145
+ readonly isMinimized: boolean;
3146
+ readonly parentDisplay: any;
3147
+ readonly effectiveRpcDriverName: any;
3148
+ } & {
3149
+ renderProps(): any;
3150
+ renderingProps(): {
3151
+ displayModel: {
3152
+ id: string;
3153
+ type: string;
3154
+ rpcDriverName: string | undefined;
3155
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3156
+ rendererTypeName: string;
3157
+ error: unknown;
3158
+ statusMessage: string | undefined;
3159
+ } & {
3160
+ readonly RenderingComponent: React.FC<{
3161
+ model: {
3162
+ id: string;
3163
+ type: string;
3164
+ rpcDriverName: string | undefined;
3165
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3166
+ rendererTypeName: string;
3167
+ error: unknown;
3168
+ statusMessage: string | undefined;
3169
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3170
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3171
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3172
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3173
+ }, {
3174
+ rendererTypeName: string;
3175
+ error: unknown;
3176
+ statusMessage: string | undefined;
3177
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3178
+ onHorizontalScroll?: () => void;
3179
+ blockState?: Record<string, any>;
3180
+ }>;
3181
+ readonly DisplayBlurb: React.FC<{
3182
+ model: {
3183
+ id: string;
3184
+ type: string;
3185
+ rpcDriverName: string | undefined;
3186
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3187
+ rendererTypeName: string;
3188
+ error: unknown;
3189
+ statusMessage: string | undefined;
3190
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3191
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3192
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3193
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3194
+ }, {
3195
+ rendererTypeName: string;
3196
+ error: unknown;
3197
+ statusMessage: string | undefined;
3198
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3199
+ }> | null;
3200
+ readonly adapterConfig: any;
3201
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3202
+ readonly isMinimized: boolean;
3203
+ readonly parentDisplay: any;
3204
+ readonly effectiveRpcDriverName: any;
3205
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3206
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3207
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3208
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3209
+ }, {
3210
+ rendererTypeName: string;
3211
+ error: unknown;
3212
+ statusMessage: string | undefined;
3213
+ } & {
3214
+ readonly RenderingComponent: React.FC<{
3215
+ model: {
3216
+ id: string;
3217
+ type: string;
3218
+ rpcDriverName: string | undefined;
3219
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3220
+ rendererTypeName: string;
3221
+ error: unknown;
3222
+ statusMessage: string | undefined;
3223
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3224
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3225
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3226
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3227
+ }, {
3228
+ rendererTypeName: string;
3229
+ error: unknown;
3230
+ statusMessage: string | undefined;
3231
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3232
+ onHorizontalScroll?: () => void;
3233
+ blockState?: Record<string, any>;
3234
+ }>;
3235
+ readonly DisplayBlurb: React.FC<{
3236
+ model: {
3237
+ id: string;
3238
+ type: string;
3239
+ rpcDriverName: string | undefined;
3240
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3241
+ rendererTypeName: string;
3242
+ error: unknown;
3243
+ statusMessage: string | undefined;
3244
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3245
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3246
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3247
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3248
+ }, {
3249
+ rendererTypeName: string;
3250
+ error: unknown;
3251
+ statusMessage: string | undefined;
3252
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3253
+ }> | null;
3254
+ readonly adapterConfig: any;
3255
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3256
+ readonly isMinimized: boolean;
3257
+ readonly parentDisplay: any;
3258
+ readonly effectiveRpcDriverName: any;
3259
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3260
+ };
3261
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3262
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3263
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3264
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3265
+ regionCannotBeRendered(): null;
3266
+ } & {
3267
+ setStatusMessage(arg?: string): void;
3268
+ setError(error?: unknown): void;
3269
+ setRpcDriverName(rpcDriverName: string): void;
3270
+ reload(): void;
3271
+ } & {
3272
+ scrollTop: number;
3273
+ } & {
3274
+ readonly height: number;
3275
+ } & {
3276
+ setScrollTop(scrollTop: number): void;
3277
+ setHeight(displayHeight: number): number;
3278
+ resizeHeight(distance: number): number;
3279
+ } & {
3280
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3281
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3282
+ currStatsBpPerPx: number;
3283
+ } & {
3284
+ readonly currentBytesRequested: number;
3285
+ readonly currentFeatureScreenDensity: number;
3286
+ readonly maxFeatureScreenDensity: any;
3287
+ readonly featureDensityStatsReady: boolean;
3288
+ readonly maxAllowableBytes: number;
3289
+ } & {
3290
+ afterAttach(): void;
3291
+ } & {
3292
+ setCurrStatsBpPerPx(n: number): void;
3293
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3294
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3295
+ setFeatureDensityStatsP(arg: any): void;
3296
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3297
+ clearFeatureDensityStats(): void;
3298
+ } & {
3299
+ readonly regionTooLarge: boolean;
3300
+ readonly regionTooLargeReason: string;
3301
+ } & {
3302
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3303
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3304
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3305
+ } & {
3306
+ mouseoverExtraInformation: string | undefined;
3307
+ featureIdUnderMouse: undefined | string;
3308
+ subfeatureIdUnderMouse: undefined | string;
3309
+ contextMenuFeature: undefined | Feature;
3310
+ } & {
3311
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3312
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3313
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3314
+ } & {
3315
+ readonly renderDelay: number;
3316
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3317
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
3318
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3319
+ readonly selectedFeatureId: string | undefined;
3320
+ readonly featureWidgetType: {
3321
+ type: string;
3322
+ id: string;
3323
+ };
3324
+ } & {
3325
+ readonly showTooltipsEnabled: boolean;
3326
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
3327
+ readonly featureUnderMouse: Feature | undefined;
3328
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
3329
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3330
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3331
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3332
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3333
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3334
+ } & {
3335
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3336
+ deleteBlock(key: string): void;
3337
+ selectFeature(feature: Feature): void;
3338
+ navToFeature(feature: Feature): void;
3339
+ clearFeatureSelection(): void;
3340
+ setFeatureIdUnderMouse(feature?: string): void;
3341
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3342
+ setContextMenuFeature(feature?: Feature): void;
3343
+ setMouseoverExtraInformation(extra?: string): void;
3344
+ setShowLegend(s: boolean): void;
3345
+ setShowTooltips(arg: boolean): void;
3346
+ } & {
3347
+ reload(): Promise<void>;
3348
+ } & {
3349
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3350
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3351
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3352
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3353
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3354
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3355
+ } & {
3356
+ heightPreConfig: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3357
+ } & {
3358
+ userBpPerPxLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3359
+ userByteSizeLimit: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3360
+ } & {
3361
+ blockState: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IModelType<{
3362
+ key: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3363
+ region: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
3364
+ reloadFlag: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
3365
+ isLeftEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3366
+ isRightEndOfDisplayedRegion: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3367
+ }, {
3368
+ stopToken: StopToken | undefined;
3369
+ filled: boolean;
3370
+ reactElement: React.ReactElement | undefined;
3371
+ features: Map<string, Feature> | undefined;
3372
+ layout: any;
3373
+ blockStatusMessage: string;
3374
+ error: unknown;
3375
+ message: string | undefined;
3376
+ maxHeightReached: boolean;
3377
+ ReactComponent: ({ model, }: {
3378
+ model: {
3379
+ error?: unknown;
3380
+ reload: () => void;
3381
+ message?: React.ReactNode;
3382
+ statusMessage?: string;
3383
+ reactElement?: React.ReactElement;
3384
+ isRenderingPending?: boolean;
3385
+ };
3386
+ }) => import("react/jsx-runtime").JSX.Element;
3387
+ renderProps: any;
3388
+ renderArgs: Record<string, unknown> | undefined;
3389
+ isRenderingPending: boolean;
3390
+ cachedDisplay: import("@jbrowse/core/util").AbstractDisplayModel | undefined;
3391
+ } & {
3392
+ doReload(): void;
3393
+ setStatusMessage(message: string): void;
3394
+ setLoading(newStopToken: StopToken): void;
3395
+ setMessage(messageText: string): void;
3396
+ setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts").RenderedProps | undefined): void;
3397
+ setError(error: unknown): void;
3398
+ reload(): void;
3399
+ setCachedDisplay(display: import("@jbrowse/core/util").AbstractDisplayModel): void;
3400
+ beforeDestroy(): void;
3401
+ } & {
3402
+ readonly statusMessage: any;
3403
+ } & {
3404
+ afterAttach(): void;
3405
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3406
+ configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
3407
+ maxFeatureScreenDensity: {
3408
+ type: string;
3409
+ description: string;
3410
+ defaultValue: number;
3411
+ };
3412
+ fetchSizeLimit: {
3413
+ type: string;
3414
+ defaultValue: number;
3415
+ description: string;
3416
+ };
3417
+ height: {
3418
+ type: string;
3419
+ defaultValue: number;
3420
+ description: string;
3421
+ };
3422
+ mouseover: {
3423
+ type: string;
3424
+ description: string;
3425
+ defaultValue: string;
3426
+ contextVariable: string[];
3427
+ };
3428
+ jexlFilters: {
3429
+ type: string;
3430
+ description: string;
3431
+ defaultValue: never[];
3432
+ };
3433
+ }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, "displayId">>;
3434
+ showLegend: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3435
+ showTooltips: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3436
+ }, {
3437
+ rendererTypeName: string;
3438
+ error: unknown;
3439
+ statusMessage: string | undefined;
3440
+ } & {
3441
+ readonly RenderingComponent: React.FC<{
3442
+ model: {
3443
+ id: string;
3444
+ type: string;
3445
+ rpcDriverName: string | undefined;
3446
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3447
+ rendererTypeName: string;
3448
+ error: unknown;
3449
+ statusMessage: string | undefined;
3450
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3451
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3452
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3453
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3454
+ }, {
3455
+ rendererTypeName: string;
3456
+ error: unknown;
3457
+ statusMessage: string | undefined;
3458
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3459
+ onHorizontalScroll?: () => void;
3460
+ blockState?: Record<string, any>;
3461
+ }>;
3462
+ readonly DisplayBlurb: React.FC<{
3463
+ model: {
3464
+ id: string;
3465
+ type: string;
3466
+ rpcDriverName: string | undefined;
3467
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3468
+ rendererTypeName: string;
3469
+ error: unknown;
3470
+ statusMessage: string | undefined;
3471
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3472
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3473
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3474
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3475
+ }, {
3476
+ rendererTypeName: string;
3477
+ error: unknown;
3478
+ statusMessage: string | undefined;
3479
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3480
+ }> | null;
3481
+ readonly adapterConfig: any;
3482
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3483
+ readonly isMinimized: boolean;
3484
+ readonly parentDisplay: any;
3485
+ readonly effectiveRpcDriverName: any;
3486
+ } & {
3487
+ renderProps(): any;
3488
+ renderingProps(): {
3489
+ displayModel: {
3490
+ id: string;
3491
+ type: string;
3492
+ rpcDriverName: string | undefined;
3493
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3494
+ rendererTypeName: string;
3495
+ error: unknown;
3496
+ statusMessage: string | undefined;
3497
+ } & {
3498
+ readonly RenderingComponent: React.FC<{
3499
+ model: {
3500
+ id: string;
3501
+ type: string;
3502
+ rpcDriverName: string | undefined;
3503
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3504
+ rendererTypeName: string;
3505
+ error: unknown;
3506
+ statusMessage: string | undefined;
3507
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3508
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3509
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3510
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3511
+ }, {
3512
+ rendererTypeName: string;
3513
+ error: unknown;
3514
+ statusMessage: string | undefined;
3515
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3516
+ onHorizontalScroll?: () => void;
3517
+ blockState?: Record<string, any>;
3518
+ }>;
3519
+ readonly DisplayBlurb: React.FC<{
3520
+ model: {
3521
+ id: string;
3522
+ type: string;
3523
+ rpcDriverName: string | undefined;
3524
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3525
+ rendererTypeName: string;
3526
+ error: unknown;
3527
+ statusMessage: string | undefined;
3528
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3529
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3530
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3531
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3532
+ }, {
3533
+ rendererTypeName: string;
3534
+ error: unknown;
3535
+ statusMessage: string | undefined;
3536
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3537
+ }> | null;
3538
+ readonly adapterConfig: any;
3539
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3540
+ readonly isMinimized: boolean;
3541
+ readonly parentDisplay: any;
3542
+ readonly effectiveRpcDriverName: any;
3543
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3544
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3545
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3546
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3547
+ }, {
3548
+ rendererTypeName: string;
3549
+ error: unknown;
3550
+ statusMessage: string | undefined;
3551
+ } & {
3552
+ readonly RenderingComponent: React.FC<{
3553
+ model: {
3554
+ id: string;
3555
+ type: string;
3556
+ rpcDriverName: string | undefined;
3557
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3558
+ rendererTypeName: string;
3559
+ error: unknown;
3560
+ statusMessage: string | undefined;
3561
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3562
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3563
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3564
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3565
+ }, {
3566
+ rendererTypeName: string;
3567
+ error: unknown;
3568
+ statusMessage: string | undefined;
3569
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3570
+ onHorizontalScroll?: () => void;
3571
+ blockState?: Record<string, any>;
3572
+ }>;
3573
+ readonly DisplayBlurb: React.FC<{
3574
+ model: {
3575
+ id: string;
3576
+ type: string;
3577
+ rpcDriverName: string | undefined;
3578
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
3579
+ rendererTypeName: string;
3580
+ error: unknown;
3581
+ statusMessage: string | undefined;
3582
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
3583
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3584
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
3585
+ rpcDriverName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
3586
+ }, {
3587
+ rendererTypeName: string;
3588
+ error: unknown;
3589
+ statusMessage: string | undefined;
3590
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3591
+ }> | null;
3592
+ readonly adapterConfig: any;
3593
+ readonly parentTrack: import("@jbrowse/core/util").AbstractTrackModel;
3594
+ readonly isMinimized: boolean;
3595
+ readonly parentDisplay: any;
3596
+ readonly effectiveRpcDriverName: any;
3597
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3598
+ };
3599
+ readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
3600
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3601
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
3602
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
3603
+ regionCannotBeRendered(): null;
3604
+ } & {
3605
+ setStatusMessage(arg?: string): void;
3606
+ setError(error?: unknown): void;
3607
+ setRpcDriverName(rpcDriverName: string): void;
3608
+ reload(): void;
3609
+ } & {
3610
+ scrollTop: number;
3611
+ } & {
3612
+ readonly height: number;
3613
+ } & {
3614
+ setScrollTop(scrollTop: number): void;
3615
+ setHeight(displayHeight: number): number;
3616
+ resizeHeight(distance: number): number;
3617
+ } & {
3618
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3619
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
3620
+ currStatsBpPerPx: number;
3621
+ } & {
3622
+ readonly currentBytesRequested: number;
3623
+ readonly currentFeatureScreenDensity: number;
3624
+ readonly maxFeatureScreenDensity: any;
3625
+ readonly featureDensityStatsReady: boolean;
3626
+ readonly maxAllowableBytes: number;
3627
+ } & {
3628
+ afterAttach(): void;
3629
+ } & {
3630
+ setCurrStatsBpPerPx(n: number): void;
3631
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3632
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
3633
+ setFeatureDensityStatsP(arg: any): void;
3634
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
3635
+ clearFeatureDensityStats(): void;
3636
+ } & {
3637
+ readonly regionTooLarge: boolean;
3638
+ readonly regionTooLargeReason: string;
3639
+ } & {
3640
+ readonly featureDensityStatsReadyAndRegionNotTooLarge: boolean;
3641
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
3642
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
3643
+ } & {
3644
+ mouseoverExtraInformation: string | undefined;
3645
+ featureIdUnderMouse: undefined | string;
3646
+ subfeatureIdUnderMouse: undefined | string;
3647
+ contextMenuFeature: undefined | Feature;
3648
+ } & {
3649
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
3650
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
3651
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
3652
+ } & {
3653
+ readonly renderDelay: number;
3654
+ readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
3655
+ legendItems(_theme?: import("@mui/material").Theme): LegendItem[];
3656
+ svgLegendWidth(theme?: import("@mui/material").Theme): number;
3657
+ readonly selectedFeatureId: string | undefined;
3658
+ readonly featureWidgetType: {
3659
+ type: string;
3660
+ id: string;
3661
+ };
3662
+ } & {
3663
+ readonly showTooltipsEnabled: boolean;
3664
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
3665
+ readonly featureUnderMouse: Feature | undefined;
3666
+ getFeatureById(featureId: string, parentFeatureId?: string): Feature | undefined;
3667
+ readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord>;
3668
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
3669
+ getFeatureByID(blockKey: string, id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3670
+ searchFeatureByID(id: string): import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/types.ts").LayoutRecord | undefined;
3671
+ readonly floatingLabelData: Map<string, import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/components/util.ts").FeatureLabelData>;
3672
+ } & {
3673
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
3674
+ deleteBlock(key: string): void;
3675
+ selectFeature(feature: Feature): void;
3676
+ navToFeature(feature: Feature): void;
3677
+ clearFeatureSelection(): void;
3678
+ setFeatureIdUnderMouse(feature?: string): void;
3679
+ setSubfeatureIdUnderMouse(subfeatureId?: string): void;
3680
+ setContextMenuFeature(feature?: Feature): void;
3681
+ setMouseoverExtraInformation(extra?: string): void;
3682
+ setShowLegend(s: boolean): void;
3683
+ setShowTooltips(arg: boolean): void;
3684
+ } & {
3685
+ reload(): Promise<void>;
3686
+ } & {
3687
+ selectFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3688
+ setContextMenuFeatureById: (featureId: string, parentFeatureId?: string | undefined, topLevelFeatureId?: string | undefined) => Promise<void>;
3689
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3690
+ onMouseMove(_: unknown, featureId?: string): void;
3691
+ onMouseLeave(_: unknown): void;
3692
+ onContextMenu(_: unknown): void;
3693
+ };
3694
+ renderProps(): any;
3695
+ } & {
3696
+ renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
3697
+ afterAttach(): void;
3698
+ } & {
3699
+ readonly rendererConfig: Omit<any, symbol>;
3700
+ readonly rendererTypeName: any;
3701
+ } & {
3702
+ renderProps(): any;
3703
+ } & {
3704
+ sourcesLoadingStopToken: StopToken | undefined;
3705
+ simplifiedFeaturesStopToken: StopToken | undefined;
3706
+ featureUnderMouseVolatile: Feature | undefined;
3707
+ sourcesVolatile: Source[] | undefined;
3708
+ colorByApplied: boolean;
3709
+ featuresVolatile: Feature[] | undefined;
3710
+ hasPhased: boolean;
3711
+ sampleInfo: undefined | Record<string, SampleInfo>;
3712
+ hoveredGenotype: {
3713
+ genotype: string;
3714
+ name: string;
3715
+ } | undefined;
3716
+ hoveredTreeNode: HoveredTreeNode | undefined;
3717
+ treeCanvas: HTMLCanvasElement | undefined;
3718
+ mouseoverCanvas: HTMLCanvasElement | undefined;
3719
+ } & {
3720
+ readonly renderingMode: string;
3721
+ } & {
3722
+ setJexlFilters(f?: string[]): void;
3723
+ setRowHeight(arg: number | "auto"): void;
3724
+ setHoveredGenotype(arg?: {
3725
+ genotype: string;
3726
+ name: string;
3727
+ }): void;
3728
+ setHoveredTreeNode(node?: HoveredTreeNode): void;
3729
+ setTreeCanvasRef(ref: HTMLCanvasElement | null): void;
3730
+ setMouseoverCanvasRef(ref: HTMLCanvasElement | null): void;
3731
+ setTreeAreaWidth(width: number): void;
3732
+ setFeatures(f: Feature[]): void;
3733
+ setColorByApplied(value: boolean): void;
3734
+ setLayout(layout: Source[], clearTree?: boolean): void;
3735
+ clearLayout(): void;
3736
+ setClusterTree(tree?: string): void;
3737
+ setSourcesLoading(token: StopToken): void;
3738
+ setSimplifiedFeaturesLoading(token: StopToken): void;
3739
+ setSources(sources: Source[]): void;
3740
+ setMafFilter(arg: number): void;
3741
+ setShowSidebarLabels(arg: boolean): void;
3742
+ setShowTree(arg: boolean): void;
3743
+ setPhasedMode(arg: string): void;
3744
+ setAutoHeight(auto: boolean): void;
3745
+ setHasPhased(arg: boolean): void;
3746
+ setSampleInfo(arg: Record<string, SampleInfo>): void;
3747
+ setReferenceDrawingMode(arg: string): void;
3748
+ } & {
3749
+ readonly autoHeight: boolean;
3750
+ readonly minorAlleleFrequencyFilter: any;
3751
+ readonly showSidebarLabels: any;
3752
+ readonly showTree: any;
3753
+ readonly referenceDrawingMode: string;
3754
+ activeFilters(): any;
3755
+ readonly sourcesWithoutLayout: Source[] | undefined;
3756
+ readonly sources: Source[] | undefined;
3757
+ readonly root: any;
3758
+ } & {
3759
+ readonly sourceMap: {
3760
+ [k: string]: Source;
3761
+ } | undefined;
3762
+ readonly availableHeight: number;
3763
+ readonly nrow: number;
3764
+ readonly rowHeight: number;
3765
+ readonly hierarchy: any;
3766
+ adapterProps(): any;
3767
+ } & {
3768
+ trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
3769
+ label: string;
3770
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3771
+ muiName: string;
3772
+ };
3773
+ type: string;
3774
+ subMenu: ({
3775
+ label: string;
3776
+ type: string;
3777
+ checked: any;
3778
+ onClick: () => void;
3779
+ disabled?: undefined;
3780
+ helpText?: undefined;
3781
+ } | {
3782
+ label: string;
3783
+ type: string;
3784
+ checked: any;
3785
+ disabled: boolean;
3786
+ onClick: () => void;
3787
+ helpText?: undefined;
3788
+ } | {
3789
+ label: string;
3790
+ helpText: string;
3791
+ type: string;
3792
+ checked: boolean;
3793
+ onClick: () => void;
3794
+ disabled?: undefined;
3795
+ })[];
3796
+ onClick?: undefined;
3797
+ } | {
3798
+ label: string;
3799
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3800
+ muiName: string;
3801
+ };
3802
+ subMenu: ({
3803
+ label: string;
3804
+ disabled: boolean;
3805
+ onClick: () => void;
3806
+ type?: undefined;
3807
+ checked?: undefined;
3808
+ } | {
3809
+ label: string;
3810
+ type: string;
3811
+ checked: boolean;
3812
+ onClick: () => void;
3813
+ disabled?: undefined;
3814
+ })[];
3815
+ type?: undefined;
3816
+ onClick?: undefined;
3817
+ } | {
3818
+ label: string;
3819
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3820
+ muiName: string;
3821
+ };
3822
+ subMenu: ({
3823
+ label: string;
3824
+ helpText: string;
3825
+ type: string;
3826
+ checked: boolean;
3827
+ onClick: () => void;
3828
+ disabled?: undefined;
3829
+ } | {
3830
+ label: string;
3831
+ helpText: string;
3832
+ disabled: boolean;
3833
+ checked: boolean;
3834
+ type: string;
3835
+ onClick: () => void;
3836
+ })[];
3837
+ type?: undefined;
3838
+ onClick?: undefined;
3839
+ } | {
3840
+ label: string;
3841
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3842
+ muiName: string;
3843
+ };
3844
+ subMenu: import("@jbrowse/core/ui").MenuItem[];
3845
+ type?: undefined;
3846
+ onClick?: undefined;
3847
+ } | {
3848
+ label: string;
3849
+ icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
3850
+ muiName: string;
3851
+ };
3852
+ onClick: () => void;
3853
+ type?: undefined;
3854
+ subMenu?: undefined;
3855
+ })[];
3856
+ } & {
3857
+ readonly canDisplayLabels: any;
3858
+ readonly totalHeight: number;
3859
+ readonly featuresReady: boolean;
3860
+ getPortableSettings(): {
3861
+ minorAlleleFrequencyFilter: any;
3862
+ showSidebarLabelsSetting: boolean | undefined;
3863
+ showTree: any;
3864
+ renderingMode: string;
3865
+ lengthCutoffFilter: number;
3866
+ jexlFilters: (import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").ISimpleType<string>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>>) | undefined;
3867
+ referenceDrawingMode: string;
3868
+ clusterTree: string | undefined;
3869
+ treeAreaWidth: number;
3870
+ layout: Source[] & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>>;
3871
+ height: number;
3872
+ };
3873
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
3874
+ onFeatureClick(_: React.MouseEvent, featureId: string): Promise<void>;
3875
+ };
1276
3876
  legendItems(): LegendItem[];
1277
3877
  } & {
1278
3878
  afterAttach(): void;
@@ -1368,14 +3968,14 @@ export default function MultiVariantBaseModelF(configSchema: AnyConfigurationSch
1368
3968
  type: import("@jbrowse/mobx-state-tree").ISimpleType<"LinearVariantMatrixDisplay">;
1369
3969
  layout: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
1370
3970
  configuration: AnyConfigurationSchemaType;
1371
- minorAlleleFrequencyFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1372
- showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
1373
- showTree: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
1374
- renderingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3971
+ minorAlleleFrequencyFilterSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<number>>;
3972
+ showSidebarLabelsSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3973
+ showTreeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>>;
3974
+ renderingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1375
3975
  rowHeightMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ITypeUnion<number | "auto", number | "auto", number | "auto">, [undefined]>;
1376
3976
  lengthCutoffFilter: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1377
3977
  jexlFilters: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>;
1378
- referenceDrawingMode: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
3978
+ referenceDrawingModeSetting: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1379
3979
  clusterTree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
1380
3980
  treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
1381
3981
  lineZoneHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;