@jbrowse/plugin-linear-genome-view 3.7.0 → 4.0.0

package/dist/index.d.ts

@@ -1,368 +0,0 @@
-import Plugin from '@jbrowse/core/Plugin';
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default class LinearGenomeViewPlugin extends Plugin {
-    name: string;
-    exports: {
-        BaseLinearDisplayComponent: (props: {
-            model: import("./BaseLinearDisplay").BaseLinearDisplayModel;
-            children?: React.ReactNode;
-        }) => import("react/jsx-runtime").JSX.Element;
-        BaseLinearDisplay: import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        } & {
-            heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-        } & {
-            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-        } & {
-            blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                key: import("mobx-state-tree").ISimpleType<string>;
-                region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-                reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            }, {
-                stopToken: string | undefined;
-                filled: boolean;
-                reactElement: React.ReactElement | undefined;
-                features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                layout: any;
-                status: string;
-                error: unknown;
-                message: string | undefined;
-                maxHeightReached: boolean;
-                ReactComponent: ({ model, }: {
-                    model: {
-                        error?: unknown;
-                        reload: () => void;
-                        message: React.ReactNode;
-                        filled?: boolean;
-                        status?: string;
-                        reactElement?: React.ReactElement;
-                    };
-                }) => import("react/jsx-runtime").JSX.Element | undefined;
-                renderProps: any;
-            } & {
-                doReload(): void;
-                afterAttach(): void;
-                setStatus(message: string): void;
-                setLoading(newStopToken: string): void;
-                setMessage(messageText: string): void;
-                setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-                setError(error: unknown): void;
-                reload(): void;
-                beforeDestroy(): void;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                maxFeatureScreenDensity: {
-                    type: string;
-                    description: string;
-                    defaultValue: number;
-                };
-                fetchSizeLimit: {
-                    type: string;
-                    defaultValue: number;
-                    description: string;
-                };
-                height: {
-                    type: string;
-                    defaultValue: number;
-                    description: string;
-                };
-                mouseover: {
-                    type: string;
-                    description: string;
-                    defaultValue: string;
-                    contextVariable: string[];
-                };
-                jexlFilters: {
-                    type: string;
-                    description: string;
-                    defaultValue: never[];
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & {
-            readonly RenderingComponent: React.FC<{
-                model: {
-                    id: string;
-                    type: string;
-                    rpcDriverName: string | undefined;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                    rendererTypeName: string;
-                    error: unknown;
-                    message: string | undefined;
-                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                    type: import("mobx-state-tree").ISimpleType<string>;
-                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                }, {
-                    rendererTypeName: string;
-                    error: unknown;
-                    message: string | undefined;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                onHorizontalScroll?: () => void;
-                blockState?: Record<string, any>;
-            }>;
-            readonly DisplayBlurb: React.FC<{
-                model: {
-                    id: string;
-                    type: string;
-                    rpcDriverName: string | undefined;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                    rendererTypeName: string;
-                    error: unknown;
-                    message: string | undefined;
-                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                    type: import("mobx-state-tree").ISimpleType<string>;
-                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                }, {
-                    rendererTypeName: string;
-                    error: unknown;
-                    message: string | undefined;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            }> | null;
-            readonly adapterConfig: any;
-            readonly parentTrack: any;
-            renderProps(): any;
-            readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-            readonly DisplayMessageComponent: undefined | React.FC<any>;
-            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-            regionCannotBeRendered(): null;
-        } & {
-            setMessage(arg?: string): void;
-            setError(error?: unknown): void;
-            setRpcDriverName(rpcDriverName: string): void;
-            reload(): void;
-        } & {
-            scrollTop: number;
-        } & {
-            readonly height: number;
-        } & {
-            setScrollTop(scrollTop: number): void;
-            setHeight(displayHeight: number): number;
-            resizeHeight(distance: number): number;
-        } & {
-            featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-            featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
-            currStatsBpPerPx: number;
-        } & {
-            readonly currentBytesRequested: number;
-            readonly currentFeatureScreenDensity: number;
-            readonly maxFeatureScreenDensity: any;
-            readonly featureDensityStatsReady: boolean;
-            readonly maxAllowableBytes: number;
-        } & {
-            afterAttach(): void;
-        } & {
-            setCurrStatsBpPerPx(n: number): void;
-            setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-            getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-            setFeatureDensityStatsP(arg: any): void;
-            setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-            clearFeatureDensityStats(): void;
-        } & {
-            readonly regionTooLarge: boolean;
-            readonly regionTooLargeReason: string;
-        } & {
-            readonly statsReadyAndRegionNotTooLarge: boolean;
-            regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-            regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
-        } & {
-            mouseoverExtraInformation: string | undefined;
-            featureIdUnderMouse: undefined | string;
-            contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
-        } & {
-            readonly DisplayMessageComponent: undefined | React.FC<any>;
-            readonly blockType: "staticBlocks" | "dynamicBlocks";
-            readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-        } & {
-            readonly renderDelay: number;
-            readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
-            readonly selectedFeatureId: string | undefined;
-            copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
-        } & {
-            readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-            readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-            readonly layoutFeatures: import("@jbrowse/core/util/compositeMap").default<string, [number, number, number, number] | [number, number, number, number, {
-                label?: string;
-                description?: string;
-                refName: string;
-            }]>;
-            getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-            getFeatureByID(blockKey: string, id: string): ([number, number, number, number] | [number, number, number, number, {
-                label?: string;
-                description?: string;
-                refName: string;
-            }]) | undefined;
-            searchFeatureByID(id: string): ([number, number, number, number] | [number, number, number, number, {
-                label?: string;
-                description?: string;
-                refName: string;
-            }]) | undefined;
-        } & {
-            addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-            deleteBlock(key: string): void;
-            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-            navToFeature(feature: import("@jbrowse/core/util").Feature): void;
-            clearFeatureSelection(): void;
-            setFeatureIdUnderMouse(feature?: string): void;
-            setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
-            setMouseoverExtraInformation(extra?: string): void;
-        } & {
-            reload(): Promise<void>;
-        } & {
-            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            renderProps(): any;
-        } & {
-            renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
-            afterAttach(): void;
-        }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        } & {
-            heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-        } & {
-            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-        } & {
-            blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                key: import("mobx-state-tree").ISimpleType<string>;
-                region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-                reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            }, {
-                stopToken: string | undefined;
-                filled: boolean;
-                reactElement: React.ReactElement | undefined;
-                features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                layout: any;
-                status: string;
-                error: unknown;
-                message: string | undefined;
-                maxHeightReached: boolean;
-                ReactComponent: ({ model, }: {
-                    model: {
-                        error?: unknown;
-                        reload: () => void;
-                        message: React.ReactNode;
-                        filled?: boolean;
-                        status?: string;
-                        reactElement?: React.ReactElement;
-                    };
-                }) => import("react/jsx-runtime").JSX.Element | undefined;
-                renderProps: any;
-            } & {
-                doReload(): void;
-                afterAttach(): void;
-                setStatus(message: string): void;
-                setLoading(newStopToken: string): void;
-                setMessage(messageText: string): void;
-                setRendered(props: import("./BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-                setError(error: unknown): void;
-                reload(): void;
-                beforeDestroy(): void;
-            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-            configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                maxFeatureScreenDensity: {
-                    type: string;
-                    description: string;
-                    defaultValue: number;
-                };
-                fetchSizeLimit: {
-                    type: string;
-                    defaultValue: number;
-                    description: string;
-                };
-                height: {
-                    type: string;
-                    defaultValue: number;
-                    description: string;
-                };
-                mouseover: {
-                    type: string;
-                    description: string;
-                    defaultValue: string;
-                    contextVariable: string[];
-                };
-                jexlFilters: {
-                    type: string;
-                    description: string;
-                    defaultValue: never[];
-                };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-        }>>, {
-            type: string;
-            id: string;
-            configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-            rpcDriverName: string | undefined;
-            heightPreConfig: number | undefined;
-            userBpPerPxLimit: number | undefined;
-            userByteSizeLimit: number | undefined;
-        }>;
-        baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            maxFeatureScreenDensity: {
-                type: string;
-                description: string;
-                defaultValue: number;
-            };
-            fetchSizeLimit: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-            height: {
-                type: string;
-                defaultValue: number;
-                description: string;
-            };
-            mouseover: {
-                type: string;
-                description: string;
-                defaultValue: string;
-                contextVariable: string[];
-            };
-            jexlFilters: {
-                type: string;
-                description: string;
-                defaultValue: never[];
-            };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-        SearchBox: ({ model, showHelp, }: {
-            showHelp?: boolean;
-            model: import("./LinearGenomeView").LinearGenomeViewModel;
-        }) => import("react/jsx-runtime").JSX.Element;
-        ZoomControls: ({ model, }: {
-            model: import("./LinearGenomeView").LinearGenomeViewModel;
-        }) => import("react/jsx-runtime").JSX.Element;
-        LinearGenomeView: ({ model, }: {
-            model: import("./LinearGenomeView").LinearGenomeViewModel;
-        }) => import("react/jsx-runtime").JSX.Element;
-    };
-    configurationSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        trackLabels: {
-            type: string;
-            defaultValue: string;
-            model: import("mobx-state-tree").ISimpleType<string>;
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-    install(pluginManager: PluginManager): void;
-    configure(pluginManager: PluginManager): void;
-}
-export type { BaseLinearDisplayModel, BlockModel, ExportSvgDisplayOptions, } from './BaseLinearDisplay';
-export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from './LinearBareDisplay';
-export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
-export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
-export { SVGRuler, SVGTracks, renderToSvg, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
-export { totalHeight } from './LinearGenomeView/svgcomponents/util';
-export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';

package/dist/index.js

@@ -1,120 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.totalHeight = exports.renderToSvg = exports.SVGTracks = exports.SVGRuler = exports.SearchBox = exports.RefNameAutocomplete = exports.baseLinearDisplayConfigSchema = exports.TrackHeightMixin = exports.TooLargeMessage = exports.FeatureDensityMixin = exports.BlockMsg = exports.BaseLinearDisplayComponent = exports.BaseLinearDisplay = exports.linearBareDisplayStateModelFactory = exports.linearBareDisplayConfigSchemaFactory = void 0;
-const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const LineStyle_1 = __importDefault(require("@mui/icons-material/LineStyle"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const BaseLinearDisplay_1 = require("./BaseLinearDisplay");
-const BasicTrack_1 = __importDefault(require("./BasicTrack"));
-const FeatureTrack_1 = __importDefault(require("./FeatureTrack"));
-const LaunchLinearGenomeView_1 = __importDefault(require("./LaunchLinearGenomeView"));
-const LinearBareDisplay_1 = __importDefault(require("./LinearBareDisplay"));
-const LinearBasicDisplay_1 = __importDefault(require("./LinearBasicDisplay"));
-const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
-const HeaderZoomControls_1 = __importDefault(require("./LinearGenomeView/components/HeaderZoomControls"));
-class LinearGenomeViewPlugin extends Plugin_1.default {
-    constructor() {
-        super(...arguments);
-        this.name = 'LinearGenomeViewPlugin';
-        this.exports = {
-            BaseLinearDisplayComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
-            BaseLinearDisplay: BaseLinearDisplay_1.BaseLinearDisplay,
-            baseLinearDisplayConfigSchema: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
-            SearchBox: LinearGenomeView_1.SearchBox,
-            ZoomControls: HeaderZoomControls_1.default,
-            LinearGenomeView: LinearGenomeView_1.LinearGenomeView,
-        };
-        this.configurationSchema = (0, configuration_1.ConfigurationSchema)('LinearGenomeViewConfigSchema', {
-            trackLabels: {
-                type: 'string',
-                defaultValue: 'overlapping',
-                model: mobx_state_tree_1.types.enumeration('trackLabelOptions', [
-                    'offset',
-                    'overlapping',
-                    'hidden',
-                ]),
-            },
-        });
-    }
-    install(pluginManager) {
-        (0, FeatureTrack_1.default)(pluginManager);
-        (0, BasicTrack_1.default)(pluginManager);
-        (0, LinearBasicDisplay_1.default)(pluginManager);
-        (0, LinearGenomeView_1.default)(pluginManager);
-        (0, LinearBareDisplay_1.default)(pluginManager);
-        (0, LaunchLinearGenomeView_1.default)(pluginManager);
-    }
-    configure(pluginManager) {
-        if ((0, util_1.isAbstractMenuManager)(pluginManager.rootModel)) {
-            pluginManager.rootModel.appendToSubMenu(['Add'], {
-                label: 'Linear genome view',
-                icon: LineStyle_1.default,
-                onClick: (session) => {
-                    session.addView('LinearGenomeView', {});
-                },
-            });
-        }
-    }
-}
-exports.default = LinearGenomeViewPlugin;
-var LinearBareDisplay_2 = require("./LinearBareDisplay");
-Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.configSchemaFactory; } });
-Object.defineProperty(exports, "linearBareDisplayStateModelFactory", { enumerable: true, get: function () { return LinearBareDisplay_2.stateModelFactory; } });
-var BaseLinearDisplay_2 = require("./BaseLinearDisplay");
-Object.defineProperty(exports, "BaseLinearDisplay", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplay; } });
-Object.defineProperty(exports, "BaseLinearDisplayComponent", { enumerable: true, get: function () { return BaseLinearDisplay_2.BaseLinearDisplayComponent; } });
-Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return BaseLinearDisplay_2.BlockMsg; } });
-Object.defineProperty(exports, "FeatureDensityMixin", { enumerable: true, get: function () { return BaseLinearDisplay_2.FeatureDensityMixin; } });
-Object.defineProperty(exports, "TooLargeMessage", { enumerable: true, get: function () { return BaseLinearDisplay_2.TooLargeMessage; } });
-Object.defineProperty(exports, "TrackHeightMixin", { enumerable: true, get: function () { return BaseLinearDisplay_2.TrackHeightMixin; } });
-Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: true, get: function () { return BaseLinearDisplay_2.baseLinearDisplayConfigSchema; } });
-var LinearGenomeView_2 = require("./LinearGenomeView");
-Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_2.RefNameAutocomplete; } });
-Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_2.SearchBox; } });
-var SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
-Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
-Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
-Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
-var util_2 = require("./LinearGenomeView/svgcomponents/util");
-Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return util_2.totalHeight; } });
-var LinearBasicDisplay_2 = require("./LinearBasicDisplay");
-Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.configSchema; } });
-Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_2.modelFactory; } });

package/dist/searchUtils.d.ts

@@ -1,26 +0,0 @@
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import type { LinearGenomeViewModel } from './LinearGenomeView';
-import type { SearchScope } from '@jbrowse/core/TextSearch/TextSearchManager';
-import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import type { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter';
-import type { TextSearchManager } from '@jbrowse/core/util';
-export declare function navToOption({ option, model, assemblyName, }: {
-    model: LinearGenomeViewModel;
-    option: BaseResult;
-    assemblyName: string;
-}): Promise<void>;
-export declare function handleSelectedRegion({ input, model, assembly, }: {
-    input: string;
-    model: LinearGenomeViewModel;
-    assembly: Assembly;
-}): Promise<void>;
-export declare function checkRef(str: string, allRefs: string[]): boolean;
-export declare function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }: {
-    queryString: string;
-    searchScope: SearchScope;
-    rankSearchResults: (results: BaseResult[]) => BaseResult[];
-    searchType?: SearchType;
-    textSearchManager?: TextSearchManager;
-    assembly?: Assembly;
-}): Promise<BaseResult[]>;
-export declare function splitLast(str: string, split: string): [string, string];

package/dist/searchUtils.js

@@ -1,80 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.navToOption = navToOption;
-exports.handleSelectedRegion = handleSelectedRegion;
-exports.checkRef = checkRef;
-exports.fetchResults = fetchResults;
-exports.splitLast = splitLast;
-const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
-const util_1 = require("@jbrowse/core/util");
-async function navToOption({ option, model, assemblyName, }) {
-    const location = option.getLocation();
-    const trackId = option.getTrackId();
-    if (location) {
-        await model.navToLocString(location, assemblyName, 0.2);
-        if (trackId) {
-            model.showTrack(trackId);
-        }
-    }
-}
-async function handleSelectedRegion({ input, model, assembly, }) {
-    const allRefs = assembly.allRefNamesWithLowerCase || [];
-    const assemblyName = assembly.name;
-    if (input.split(' ').every(entry => checkRef(entry, allRefs))) {
-        await model.navToLocString(input, assembly.name);
-    }
-    else {
-        const searchScope = model.searchScope(assemblyName);
-        const { textSearchManager } = (0, util_1.getSession)(model);
-        const results = await fetchResults({
-            queryString: input,
-            searchType: 'exact',
-            searchScope,
-            rankSearchResults: model.rankSearchResults,
-            textSearchManager,
-            assembly,
-        });
-        if (results.length > 1) {
-            model.setSearchResults(results, input.toLowerCase(), assemblyName);
-        }
-        else if (results.length === 1) {
-            await navToOption({
-                option: results[0],
-                model,
-                assemblyName,
-            });
-        }
-        else {
-            await model.navToLocString(input, assemblyName);
-        }
-    }
-}
-function checkRef(str, allRefs) {
-    const [ref, rest] = splitLast(str, ':');
-    return (allRefs.includes(str) ||
-        (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10))));
-}
-async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
-    var _a;
-    if (!textSearchManager) {
-        console.warn('No text search manager');
-    }
-    const textSearchResults = await (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
-        queryString,
-        searchType,
-    }, searchScope, rankSearchResults));
-    const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({ label: r }));
-    return (0, util_1.dedupe)([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
-}
-function splitLast(str, split) {
-    const lastIndex = str.lastIndexOf(split);
-    if (lastIndex === -1) {
-        return [str, ''];
-    }
-    const before = str.slice(0, lastIndex);
-    const after = str.slice(lastIndex + 1);
-    return [before, after];
-}

package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts

@@ -1,6 +0,0 @@
-declare const BlockLoadingMessage: ({ model, }: {
-    model: {
-        status?: string;
-    };
-}) => import("react/jsx-runtime").JSX.Element;
-export default BlockLoadingMessage;

package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js

@@ -1,24 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import { LoadingEllipses } from '@jbrowse/core/ui';
-import { observer } from 'mobx-react';
-import { getParent } from 'mobx-state-tree';
-import { makeStyles } from 'tss-react/mui';
-const useStyles = makeStyles()(theme => {
-    const bg = theme.palette.action.disabledBackground;
-    return {
-        loading: {
-            paddingLeft: '0.6em',
-            backgroundColor: theme.palette.background.default,
-            backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
-            textAlign: 'center',
-        },
-    };
-});
-const BlockLoadingMessage = observer(function ({ model, }) {
-    const { classes } = useStyles();
-    const { status: blockStatus } = model;
-    const { message: displayStatus } = getParent(model, 2);
-    const status = displayStatus || blockStatus;
-    return (_jsx("div", { className: classes.loading, children: _jsx(LoadingEllipses, { message: status }) }));
-});
-export default BlockLoadingMessage;

package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts

@@ -1,9 +0,0 @@
-declare const AddFiltersDialog: ({ model, handleClose, }: {
-    model: {
-        jexlFilters?: string[];
-        activeFilters: string[];
-        setJexlFilters: (arg?: string[]) => void;
-    };
-    handleClose: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default AddFiltersDialog;

package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts

@@ -1,8 +0,0 @@
-declare const SetMaxHeightDialog: ({ model, handleClose, }: {
-    model: {
-        maxHeight?: number;
-        setMaxHeight: (arg?: number) => void;
-    };
-    handleClose: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SetMaxHeightDialog;

package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts

@@ -1,6 +0,0 @@
-import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
-declare const ScalebarCoordinateTicks: ({ block, bpPerPx, }: {
-    block: ContentBlock;
-    bpPerPx: number;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ScalebarCoordinateTicks;