@jbrowse/plugin-linear-genome-view 3.7.0 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (396) hide show
  1. package/esm/BaseLinearDisplay/SVGLegend.d.ts +6 -0
  2. package/esm/BaseLinearDisplay/SVGLegend.js +17 -0
  3. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.d.ts +2 -0
  4. package/esm/BaseLinearDisplay/calculateSvgLegendWidth.js +11 -0
  5. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +3 -3
  6. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +12 -8
  7. package/esm/BaseLinearDisplay/components/Block.js +2 -2
  8. package/esm/BaseLinearDisplay/components/BlockErrorMessage.js +2 -2
  9. package/esm/BaseLinearDisplay/components/BlockMsg.js +9 -2
  10. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.d.ts +9 -0
  11. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/CollapseIntronsDialog.js +42 -0
  12. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.d.ts +11 -0
  13. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/TranscriptTable.js +40 -0
  14. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.d.ts +19 -0
  15. package/esm/BaseLinearDisplay/components/CollapseIntronsDialog/util.js +45 -0
  16. package/esm/BaseLinearDisplay/components/FloatingLabels.d.ts +5 -0
  17. package/esm/BaseLinearDisplay/components/FloatingLabels.js +89 -0
  18. package/esm/BaseLinearDisplay/components/FloatingLegend.d.ts +8 -0
  19. package/esm/BaseLinearDisplay/components/FloatingLegend.js +43 -0
  20. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +1 -1
  21. package/esm/BaseLinearDisplay/components/LinearBlocks.js +4 -6
  22. package/esm/BaseLinearDisplay/components/LoadingOverlay.d.ts +4 -0
  23. package/esm/BaseLinearDisplay/components/LoadingOverlay.js +49 -0
  24. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +3 -2
  25. package/esm/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +5 -3
  26. package/esm/BaseLinearDisplay/components/MenuPage.d.ts +2 -2
  27. package/esm/BaseLinearDisplay/components/MenuPage.js +1 -1
  28. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.d.ts +19 -0
  29. package/esm/BaseLinearDisplay/components/NonBlockCanvasDisplayComponent.js +48 -0
  30. package/esm/BaseLinearDisplay/components/RenderedBlocks.d.ts +4 -1
  31. package/esm/BaseLinearDisplay/components/RenderedBlocks.js +4 -4
  32. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  33. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +5 -8
  34. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +3 -3
  35. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +1 -0
  36. package/esm/BaseLinearDisplay/components/Tooltip.js +6 -6
  37. package/esm/BaseLinearDisplay/components/util.d.ts +21 -0
  38. package/esm/BaseLinearDisplay/components/util.js +116 -0
  39. package/esm/BaseLinearDisplay/index.d.ts +17 -8
  40. package/esm/BaseLinearDisplay/index.js +13 -6
  41. package/esm/BaseLinearDisplay/model.d.ts +954 -101
  42. package/esm/BaseLinearDisplay/model.js +211 -88
  43. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +5 -5
  44. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +11 -14
  45. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.d.ts +21 -0
  46. package/esm/BaseLinearDisplay/models/NonBlockCanvasDisplayMixin.js +46 -0
  47. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +3 -3
  48. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +2 -3
  49. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +1 -1
  50. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +2 -3
  51. package/esm/BaseLinearDisplay/models/calculateLabelPositions.d.ts +24 -0
  52. package/esm/BaseLinearDisplay/models/calculateLabelPositions.js +60 -0
  53. package/esm/BaseLinearDisplay/models/configSchema.d.ts +2 -2
  54. package/esm/BaseLinearDisplay/models/configSchema.js +2 -2
  55. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +3 -7
  56. package/esm/BaseLinearDisplay/models/renderSvg.js +22 -11
  57. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +37 -19
  58. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +151 -135
  59. package/esm/BaseLinearDisplay/models/util.d.ts +4 -4
  60. package/esm/BaseLinearDisplay/models/util.js +16 -13
  61. package/esm/BaseLinearDisplay/renderSvg.d.ts +3 -0
  62. package/esm/BaseLinearDisplay/renderSvg.js +59 -0
  63. package/esm/BaseLinearDisplay/types.d.ts +47 -0
  64. package/esm/BaseLinearDisplay/types.js +3 -0
  65. package/esm/BaseLinearDisplay/util.d.ts +15 -0
  66. package/esm/BaseLinearDisplay/util.js +61 -0
  67. package/esm/BasicTrack/configSchema.d.ts +16 -11
  68. package/esm/BasicTrack/index.js +1 -1
  69. package/esm/FeatureTrack/configSchema.d.ts +16 -11
  70. package/esm/FeatureTrack/index.js +1 -1
  71. package/esm/LaunchLinearGenomeView/index.js +12 -62
  72. package/esm/LinearBareDisplay/configSchema.d.ts +4 -4
  73. package/esm/LinearBareDisplay/configSchema.js +1 -1
  74. package/esm/LinearBareDisplay/index.d.ts +2 -2
  75. package/esm/LinearBareDisplay/index.js +5 -5
  76. package/esm/LinearBareDisplay/model.d.ts +957 -105
  77. package/esm/LinearBareDisplay/model.js +3 -6
  78. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.d.ts +5 -0
  79. package/esm/LinearBasicDisplay/components/LinearBasicDisplayComponent.js +9 -0
  80. package/esm/LinearBasicDisplay/configSchema.d.ts +4 -4
  81. package/esm/LinearBasicDisplay/configSchema.js +1 -1
  82. package/esm/LinearBasicDisplay/index.d.ts +2 -2
  83. package/esm/LinearBasicDisplay/index.js +6 -6
  84. package/esm/LinearBasicDisplay/model.d.ts +1132 -135
  85. package/esm/LinearBasicDisplay/model.js +116 -116
  86. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/AddFiltersDialog.js +2 -2
  87. package/esm/{LinearBasicDisplay → LinearFeatureDisplay}/components/SetMaxHeightDialog.js +3 -3
  88. package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/configSchema.d.ts +4 -4
  89. package/esm/LinearFeatureDisplay/configSchema.js +11 -0
  90. package/esm/LinearFeatureDisplay/index.d.ts +3 -0
  91. package/esm/LinearFeatureDisplay/index.js +2 -0
  92. package/esm/LinearFeatureDisplay/model.d.ts +1415 -0
  93. package/esm/LinearFeatureDisplay/model.js +265 -0
  94. package/esm/LinearGenomeView/SVGErrorBox.d.ts +5 -0
  95. package/esm/LinearGenomeView/SVGErrorBox.js +4 -0
  96. package/esm/LinearGenomeView/afterAttach.d.ts +5 -0
  97. package/esm/LinearGenomeView/afterAttach.js +95 -0
  98. package/esm/LinearGenomeView/components/CenterLine.js +6 -4
  99. package/esm/LinearGenomeView/components/Cytobands.js +4 -4
  100. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
  101. package/esm/LinearGenomeView/components/ExportSvgDialog.js +5 -1
  102. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +8 -2
  103. package/esm/LinearGenomeView/components/GetSequenceDialog.js +13 -16
  104. package/esm/LinearGenomeView/components/Gridlines.js +18 -15
  105. package/esm/LinearGenomeView/components/Header.js +9 -9
  106. package/esm/LinearGenomeView/components/HeaderPanControls.js +2 -2
  107. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +4 -5
  108. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +2 -2
  109. package/esm/LinearGenomeView/components/HeaderZoomControls.js +3 -3
  110. package/esm/LinearGenomeView/components/Highlight.d.ts +1 -1
  111. package/esm/LinearGenomeView/components/Highlight.js +6 -6
  112. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
  113. package/esm/LinearGenomeView/components/ImportForm.js +14 -12
  114. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +3 -3
  115. package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -7
  116. package/esm/LinearGenomeView/components/LinearGenomeViewContainer.js +7 -8
  117. package/esm/LinearGenomeView/components/MiniControls.js +6 -6
  118. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -2
  119. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -1
  120. package/esm/LinearGenomeView/components/OverviewHighlight.js +5 -5
  121. package/esm/LinearGenomeView/components/OverviewRubberband.js +4 -4
  122. package/esm/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +9 -5
  123. package/esm/LinearGenomeView/components/OverviewScalebar.js +36 -28
  124. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +5 -5
  125. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +7 -7
  126. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
  127. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -1
  128. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +10 -10
  129. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +1 -1
  130. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +6 -4
  131. package/esm/LinearGenomeView/components/Rubberband.js +9 -7
  132. package/esm/LinearGenomeView/components/RubberbandSpan.js +4 -5
  133. package/esm/LinearGenomeView/components/Scalebar.js +8 -10
  134. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -1
  135. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +50 -17
  136. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -1
  137. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +13 -11
  138. package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -1
  139. package/esm/LinearGenomeView/components/SearchBox.js +8 -9
  140. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -1
  141. package/esm/LinearGenomeView/components/SearchResultsDialog.js +2 -2
  142. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -1
  143. package/esm/LinearGenomeView/components/SearchResultsTable.js +4 -6
  144. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +5 -5
  145. package/esm/LinearGenomeView/components/TrackContainer.js +25 -17
  146. package/esm/LinearGenomeView/components/TrackLabel.js +10 -11
  147. package/esm/LinearGenomeView/components/TrackLabelContainer.js +7 -8
  148. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +1 -1
  149. package/esm/LinearGenomeView/components/TrackLabelMenu.js +80 -68
  150. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  151. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +5 -5
  152. package/esm/LinearGenomeView/components/TracksContainer.js +18 -15
  153. package/esm/LinearGenomeView/components/VerticalGuide.js +5 -3
  154. package/esm/LinearGenomeView/components/fetchSequence.d.ts +7 -2
  155. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +27 -2
  156. package/esm/LinearGenomeView/components/useRangeSelect.js +19 -9
  157. package/esm/LinearGenomeView/components/useWheelScroll.js +22 -12
  158. package/esm/LinearGenomeView/components/util.d.ts +2 -13
  159. package/esm/LinearGenomeView/components/util.js +12 -31
  160. package/esm/LinearGenomeView/index.d.ts +1 -1
  161. package/esm/LinearGenomeView/index.js +3 -3
  162. package/esm/LinearGenomeView/keyboardHandler.d.ts +2 -0
  163. package/esm/LinearGenomeView/keyboardHandler.js +29 -0
  164. package/esm/LinearGenomeView/menuItems.d.ts +7 -0
  165. package/esm/LinearGenomeView/menuItems.js +299 -0
  166. package/esm/LinearGenomeView/model.d.ts +92 -89
  167. package/esm/LinearGenomeView/model.js +166 -414
  168. package/esm/LinearGenomeView/svgExportUtil.d.ts +9 -0
  169. package/esm/LinearGenomeView/svgExportUtil.js +6 -0
  170. package/{dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts → esm/LinearGenomeView/svgcomponents/SVGGridlines.d.ts} +2 -2
  171. package/esm/LinearGenomeView/svgcomponents/SVGGridlines.js +20 -0
  172. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +5 -5
  173. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +4 -3
  174. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +24 -12
  175. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +13 -5
  176. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +2 -2
  177. package/esm/LinearGenomeView/types.d.ts +5 -1
  178. package/esm/LinearGenomeView/util.d.ts +2 -2
  179. package/esm/LinearGenomeView/util.js +7 -5
  180. package/esm/index.d.ts +973 -107
  181. package/esm/index.js +37 -38
  182. package/esm/searchUtils.d.ts +1 -1
  183. package/esm/searchUtils.js +6 -4
  184. package/package.json +28 -33
  185. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +0 -8
  186. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +0 -57
  187. package/dist/BaseLinearDisplay/components/Block.d.ts +0 -14
  188. package/dist/BaseLinearDisplay/components/Block.js +0 -50
  189. package/dist/BaseLinearDisplay/components/BlockErrorMessage.d.ts +0 -7
  190. package/dist/BaseLinearDisplay/components/BlockErrorMessage.js +0 -27
  191. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  192. package/dist/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -26
  193. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +0 -6
  194. package/dist/BaseLinearDisplay/components/BlockMsg.js +0 -22
  195. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +0 -5
  196. package/dist/BaseLinearDisplay/components/LinearBlocks.js +0 -28
  197. package/dist/BaseLinearDisplay/components/MaxHeightReachedIndicator.d.ts +0 -3
  198. package/dist/BaseLinearDisplay/components/MaxHeightReachedIndicator.js +0 -27
  199. package/dist/BaseLinearDisplay/components/MenuPage.d.ts +0 -8
  200. package/dist/BaseLinearDisplay/components/MenuPage.js +0 -26
  201. package/dist/BaseLinearDisplay/components/RenderedBlocks.d.ts +0 -9
  202. package/dist/BaseLinearDisplay/components/RenderedBlocks.js +0 -27
  203. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +0 -11
  204. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +0 -59
  205. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +0 -10
  206. package/dist/BaseLinearDisplay/components/TooLargeMessage.js +0 -25
  207. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +0 -12
  208. package/dist/BaseLinearDisplay/components/Tooltip.js +0 -27
  209. package/dist/BaseLinearDisplay/components/types.d.ts +0 -1
  210. package/dist/BaseLinearDisplay/components/types.js +0 -2
  211. package/dist/BaseLinearDisplay/index.d.ts +0 -8
  212. package/dist/BaseLinearDisplay/index.js +0 -20
  213. package/dist/BaseLinearDisplay/model.d.ts +0 -324
  214. package/dist/BaseLinearDisplay/model.js +0 -340
  215. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +0 -32
  216. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +0 -122
  217. package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +0 -11
  218. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +0 -35
  219. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +0 -2
  220. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +0 -33
  221. package/dist/BaseLinearDisplay/models/configSchema.d.ts +0 -29
  222. package/dist/BaseLinearDisplay/models/configSchema.js +0 -35
  223. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +0 -7
  224. package/dist/BaseLinearDisplay/models/renderSvg.js +0 -80
  225. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +0 -78
  226. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +0 -229
  227. package/dist/BaseLinearDisplay/models/util.d.ts +0 -22
  228. package/dist/BaseLinearDisplay/models/util.js +0 -45
  229. package/dist/BasicTrack/configSchema.d.ts +0 -80
  230. package/dist/BasicTrack/configSchema.js +0 -10
  231. package/dist/BasicTrack/index.d.ts +0 -2
  232. package/dist/BasicTrack/index.js +0 -18
  233. package/dist/FeatureTrack/configSchema.d.ts +0 -80
  234. package/dist/FeatureTrack/configSchema.js +0 -10
  235. package/dist/FeatureTrack/index.d.ts +0 -2
  236. package/dist/FeatureTrack/index.js +0 -19
  237. package/dist/LaunchLinearGenomeView/index.d.ts +0 -2
  238. package/dist/LaunchLinearGenomeView/index.js +0 -70
  239. package/dist/LinearBareDisplay/configSchema.d.ts +0 -32
  240. package/dist/LinearBareDisplay/configSchema.js +0 -13
  241. package/dist/LinearBareDisplay/index.d.ts +0 -4
  242. package/dist/LinearBareDisplay/index.js +0 -26
  243. package/dist/LinearBareDisplay/model.d.ts +0 -324
  244. package/dist/LinearBareDisplay/model.js +0 -38
  245. package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +0 -61
  246. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +0 -28
  247. package/dist/LinearBasicDisplay/configSchema.js +0 -13
  248. package/dist/LinearBasicDisplay/index.d.ts +0 -4
  249. package/dist/LinearBasicDisplay/index.js +0 -29
  250. package/dist/LinearBasicDisplay/model.d.ts +0 -361
  251. package/dist/LinearBasicDisplay/model.js +0 -192
  252. package/dist/LinearGenomeView/components/CenterLine.d.ts +0 -6
  253. package/dist/LinearGenomeView/components/CenterLine.js +0 -38
  254. package/dist/LinearGenomeView/components/Cytobands.d.ts +0 -9
  255. package/dist/LinearGenomeView/components/Cytobands.js +0 -89
  256. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +0 -7
  257. package/dist/LinearGenomeView/components/ExportSvgDialog.js +0 -57
  258. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +0 -6
  259. package/dist/LinearGenomeView/components/GetSequenceDialog.js +0 -109
  260. package/dist/LinearGenomeView/components/Gridlines.d.ts +0 -7
  261. package/dist/LinearGenomeView/components/Gridlines.js +0 -70
  262. package/dist/LinearGenomeView/components/Header.d.ts +0 -5
  263. package/dist/LinearGenomeView/components/Header.js +0 -38
  264. package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +0 -6
  265. package/dist/LinearGenomeView/components/HeaderPanControls.js +0 -27
  266. package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +0 -5
  267. package/dist/LinearGenomeView/components/HeaderRegionWidth.js +0 -21
  268. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +0 -5
  269. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +0 -19
  270. package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +0 -5
  271. package/dist/LinearGenomeView/components/HeaderZoomControls.js +0 -109
  272. package/dist/LinearGenomeView/components/Highlight.d.ts +0 -12
  273. package/dist/LinearGenomeView/components/Highlight.js +0 -95
  274. package/dist/LinearGenomeView/components/ImportForm.d.ts +0 -6
  275. package/dist/LinearGenomeView/components/ImportForm.js +0 -80
  276. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +0 -11
  277. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +0 -32
  278. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +0 -5
  279. package/dist/LinearGenomeView/components/LinearGenomeView.js +0 -57
  280. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.d.ts +0 -5
  281. package/dist/LinearGenomeView/components/LinearGenomeViewContainer.js +0 -98
  282. package/dist/LinearGenomeView/components/MiniControls.d.ts +0 -5
  283. package/dist/LinearGenomeView/components/MiniControls.js +0 -36
  284. package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +0 -5
  285. package/dist/LinearGenomeView/components/NoTracksActiveButton.js +0 -23
  286. package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +0 -8
  287. package/dist/LinearGenomeView/components/OverviewHighlight.js +0 -50
  288. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +0 -9
  289. package/dist/LinearGenomeView/components/OverviewRubberband.js +0 -113
  290. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.d.ts +0 -10
  291. package/dist/LinearGenomeView/components/OverviewRubberbandHoverTooltip.js +0 -28
  292. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +0 -7
  293. package/dist/LinearGenomeView/components/OverviewScalebar.js +0 -146
  294. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +0 -8
  295. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +0 -41
  296. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +0 -10
  297. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +0 -37
  298. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +0 -8
  299. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +0 -18
  300. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +0 -3
  301. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +0 -56
  302. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +0 -3
  303. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +0 -11
  304. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +0 -16
  305. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +0 -127
  306. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +0 -10
  307. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +0 -53
  308. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +0 -6
  309. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +0 -30
  310. package/dist/LinearGenomeView/components/Rubberband.d.ts +0 -7
  311. package/dist/LinearGenomeView/components/Rubberband.js +0 -35
  312. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +0 -15
  313. package/dist/LinearGenomeView/components/RubberbandSpan.js +0 -39
  314. package/dist/LinearGenomeView/components/RubberbandTooltip.d.ts +0 -5
  315. package/dist/LinearGenomeView/components/RubberbandTooltip.js +0 -20
  316. package/dist/LinearGenomeView/components/Scalebar.d.ts +0 -10
  317. package/dist/LinearGenomeView/components/Scalebar.js +0 -40
  318. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +0 -6
  319. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +0 -29
  320. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  321. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -38
  322. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +0 -6
  323. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +0 -46
  324. package/dist/LinearGenomeView/components/SearchBox.d.ts +0 -6
  325. package/dist/LinearGenomeView/components/SearchBox.js +0 -88
  326. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -9
  327. package/dist/LinearGenomeView/components/SearchResultsDialog.js +0 -15
  328. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +0 -8
  329. package/dist/LinearGenomeView/components/SearchResultsTable.js +0 -74
  330. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +0 -8
  331. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +0 -67
  332. package/dist/LinearGenomeView/components/TrackContainer.d.ts +0 -8
  333. package/dist/LinearGenomeView/components/TrackContainer.js +0 -55
  334. package/dist/LinearGenomeView/components/TrackLabel.d.ts +0 -7
  335. package/dist/LinearGenomeView/components/TrackLabel.js +0 -49
  336. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +0 -8
  337. package/dist/LinearGenomeView/components/TrackLabelContainer.js +0 -31
  338. package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +0 -8
  339. package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +0 -32
  340. package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +0 -5
  341. package/dist/LinearGenomeView/components/TrackLabelMenu.js +0 -93
  342. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +0 -9
  343. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +0 -50
  344. package/dist/LinearGenomeView/components/TracksContainer.d.ts +0 -7
  345. package/dist/LinearGenomeView/components/TracksContainer.js +0 -84
  346. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +0 -7
  347. package/dist/LinearGenomeView/components/VerticalGuide.js +0 -31
  348. package/dist/LinearGenomeView/components/fetchSequence.d.ts +0 -4
  349. package/dist/LinearGenomeView/components/fetchSequence.js +0 -29
  350. package/dist/LinearGenomeView/components/useRangeSelect.d.ts +0 -59
  351. package/dist/LinearGenomeView/components/useRangeSelect.js +0 -127
  352. package/dist/LinearGenomeView/components/useSideScroll.d.ts +0 -6
  353. package/dist/LinearGenomeView/components/useSideScroll.js +0 -60
  354. package/dist/LinearGenomeView/components/useWheelScroll.d.ts +0 -7
  355. package/dist/LinearGenomeView/components/useWheelScroll.js +0 -62
  356. package/dist/LinearGenomeView/components/util.d.ts +0 -25
  357. package/dist/LinearGenomeView/components/util.js +0 -49
  358. package/dist/LinearGenomeView/consts.d.ts +0 -7
  359. package/dist/LinearGenomeView/consts.js +0 -10
  360. package/dist/LinearGenomeView/index.d.ts +0 -3
  361. package/dist/LinearGenomeView/index.js +0 -53
  362. package/dist/LinearGenomeView/model.d.ts +0 -268
  363. package/dist/LinearGenomeView/model.js +0 -1109
  364. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +0 -5
  365. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +0 -10
  366. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +0 -7
  367. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +0 -47
  368. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +0 -6
  369. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +0 -42
  370. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +0 -8
  371. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +0 -7
  372. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +0 -39
  373. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +0 -7
  374. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +0 -17
  375. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +0 -7
  376. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +0 -14
  377. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +0 -21
  378. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +0 -32
  379. package/dist/LinearGenomeView/svgcomponents/util.d.ts +0 -8
  380. package/dist/LinearGenomeView/svgcomponents/util.js +0 -8
  381. package/dist/LinearGenomeView/types.d.ts +0 -43
  382. package/dist/LinearGenomeView/types.js +0 -2
  383. package/dist/LinearGenomeView/util.d.ts +0 -26
  384. package/dist/LinearGenomeView/util.js +0 -138
  385. package/dist/index.d.ts +0 -368
  386. package/dist/index.js +0 -120
  387. package/dist/searchUtils.d.ts +0 -26
  388. package/dist/searchUtils.js +0 -80
  389. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.d.ts +0 -6
  390. package/esm/BaseLinearDisplay/components/BlockLoadingMessage.js +0 -24
  391. package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +0 -9
  392. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +0 -8
  393. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +0 -6
  394. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +0 -36
  395. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/AddFiltersDialog.d.ts +0 -0
  396. /package/{dist/LinearBasicDisplay → esm/LinearFeatureDisplay}/components/SetMaxHeightDialog.d.ts +0 -0
package/esm/index.js CHANGED
@@ -1,40 +1,37 @@
1
1
  import Plugin from '@jbrowse/core/Plugin';
2
2
  import { ConfigurationSchema } from '@jbrowse/core/configuration';
3
3
  import { isAbstractMenuManager } from '@jbrowse/core/util';
4
+ import { types } from '@jbrowse/mobx-state-tree';
4
5
  import LineStyleIcon from '@mui/icons-material/LineStyle';
5
- import { types } from 'mobx-state-tree';
6
- import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
7
- import BasicTrackF from './BasicTrack';
8
- import FeatureTrackF from './FeatureTrack';
9
- import LaunchLinearGenomeViewF from './LaunchLinearGenomeView';
10
- import LinearBareDisplayF from './LinearBareDisplay';
11
- import LinearBasicDisplayF from './LinearBasicDisplay';
12
- import LinearGenomeViewF, { LinearGenomeView, SearchBox, } from './LinearGenomeView';
13
- import ZoomControls from './LinearGenomeView/components/HeaderZoomControls';
6
+ import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from "./BaseLinearDisplay/index.js";
7
+ import BasicTrackF from "./BasicTrack/index.js";
8
+ import FeatureTrackF from "./FeatureTrack/index.js";
9
+ import LaunchLinearGenomeViewF from "./LaunchLinearGenomeView/index.js";
10
+ import LinearBareDisplayF from "./LinearBareDisplay/index.js";
11
+ import LinearBasicDisplayF from "./LinearBasicDisplay/index.js";
12
+ import ZoomControls from "./LinearGenomeView/components/HeaderZoomControls.js";
13
+ import LinearGenomeViewF, { LinearGenomeView, SearchBox, } from "./LinearGenomeView/index.js";
14
14
  export default class LinearGenomeViewPlugin extends Plugin {
15
- constructor() {
16
- super(...arguments);
17
- this.name = 'LinearGenomeViewPlugin';
18
- this.exports = {
19
- BaseLinearDisplayComponent,
20
- BaseLinearDisplay,
21
- baseLinearDisplayConfigSchema,
22
- SearchBox,
23
- ZoomControls,
24
- LinearGenomeView,
25
- };
26
- this.configurationSchema = ConfigurationSchema('LinearGenomeViewConfigSchema', {
27
- trackLabels: {
28
- type: 'string',
29
- defaultValue: 'overlapping',
30
- model: types.enumeration('trackLabelOptions', [
31
- 'offset',
32
- 'overlapping',
33
- 'hidden',
34
- ]),
35
- },
36
- });
37
- }
15
+ name = 'LinearGenomeViewPlugin';
16
+ exports = {
17
+ BaseLinearDisplayComponent,
18
+ BaseLinearDisplay,
19
+ baseLinearDisplayConfigSchema,
20
+ SearchBox,
21
+ ZoomControls,
22
+ LinearGenomeView,
23
+ };
24
+ configurationSchema = ConfigurationSchema('LinearGenomeViewConfigSchema', {
25
+ trackLabels: {
26
+ type: 'string',
27
+ defaultValue: 'overlapping',
28
+ model: types.enumeration('trackLabelOptions', [
29
+ 'offset',
30
+ 'overlapping',
31
+ 'hidden',
32
+ ]),
33
+ },
34
+ });
38
35
  install(pluginManager) {
39
36
  FeatureTrackF(pluginManager);
40
37
  BasicTrackF(pluginManager);
@@ -55,9 +52,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
55
52
  }
56
53
  }
57
54
  }
58
- export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from './LinearBareDisplay';
59
- export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
60
- export { RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
61
- export { SVGRuler, SVGTracks, renderToSvg, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
62
- export { totalHeight } from './LinearGenomeView/svgcomponents/util';
63
- export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
55
+ export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from "./LinearBareDisplay/index.js";
56
+ export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, FloatingLegend, NonBlockCanvasDisplayComponent, NonBlockCanvasDisplayMixin, SVGLegend, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, calculateSvgLegendWidth, createSubfeatureLabelMetadata, drawCanvasImageData, } from "./BaseLinearDisplay/index.js";
57
+ export { RefNameAutocomplete, SearchBox, } from "./LinearGenomeView/index.js";
58
+ export { SVGGridlines, SVGRuler, SVGTracks, renderToSvg, } from "./LinearGenomeView/svgcomponents/SVGLinearGenomeView.js";
59
+ export { totalHeight } from "./LinearGenomeView/svgcomponents/util.js";
60
+ export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from "./LinearBasicDisplay/index.js";
61
+ export { configSchema as linearFeatureDisplayConfigSchemaFactory, modelFactory as linearFeatureDisplayModelFactory, } from "./LinearFeatureDisplay/index.js";
62
+ export { default as LinearBasicDisplayComponent } from "./LinearBasicDisplay/components/LinearBasicDisplayComponent.js";
@@ -1,5 +1,5 @@
1
1
  import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
2
- import type { LinearGenomeViewModel } from './LinearGenomeView';
2
+ import type { LinearGenomeViewModel } from './LinearGenomeView/index.ts';
3
3
  import type { SearchScope } from '@jbrowse/core/TextSearch/TextSearchManager';
4
4
  import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
5
5
  import type { SearchType } from '@jbrowse/core/data_adapters/BaseAdapter';
@@ -48,15 +48,17 @@ export function checkRef(str, allRefs) {
48
48
  (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10))));
49
49
  }
50
50
  export async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
51
- var _a;
52
51
  if (!textSearchManager) {
53
52
  console.warn('No text search manager');
54
53
  }
55
- const textSearchResults = await (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
54
+ const textSearchResults = await textSearchManager?.search({
56
55
  queryString,
57
56
  searchType,
58
- }, searchScope, rankSearchResults));
59
- const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResult({ label: r }));
57
+ }, searchScope, rankSearchResults);
58
+ const refNameResults = assembly?.allRefNames
59
+ ?.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase()))
60
+ .slice(0, 10)
61
+ .map(r => new BaseResult({ label: r }));
60
62
  return dedupe([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
61
63
  }
62
64
  export function splitLast(str, split) {
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-linear-genome-view",
3
- "version": "3.7.0",
3
+ "version": "4.0.0",
4
4
  "description": "JBrowse 2 linear genome view",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -15,39 +15,21 @@
15
15
  "directory": "plugins/linear-genome-view"
16
16
  },
17
17
  "author": "JBrowse Team",
18
- "distMain": "dist/index.js",
19
- "distModule": "esm/index.js",
20
- "srcMain": "src/index.ts",
21
- "srcModule": "src/index.ts",
22
- "main": "dist/index.js",
18
+ "main": "esm/index.js",
23
19
  "files": [
24
- "dist",
25
20
  "esm"
26
21
  ],
27
- "scripts": {
28
- "prebuild": "npm run clean",
29
- "build": "npm-run-all build:*",
30
- "build:esm": "tsc --build tsconfig.build.esm.json",
31
- "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
32
- "clean": "rimraf dist esm *.tsbuildinfo",
33
- "test": "cd ../..; jest --passWithNoTests plugins/linear-genome-view",
34
- "prepublishOnly": "yarn test",
35
- "prepack": "yarn build && yarn useDist",
36
- "postpack": "yarn useSrc",
37
- "useDist": "node ../../scripts/useDist.js",
38
- "useSrc": "node ../../scripts/useSrc.js"
39
- },
40
22
  "dependencies": {
41
- "@jbrowse/core": "^3.7.0",
42
- "@mui/icons-material": "^7.0.0",
43
- "@mui/material": "^7.0.0",
44
- "@types/file-saver": "^2.0.1",
45
- "copy-to-clipboard": "^3.3.1",
46
- "file-saver": "^2.0.0",
47
- "mobx": "^6.0.0",
48
- "mobx-react": "^9.0.0",
49
- "mobx-state-tree": "^5.0.0",
50
- "tss-react": "^4.0.0"
23
+ "@jbrowse/mobx-state-tree": "^5.5.0",
24
+ "@mui/icons-material": "^7.3.6",
25
+ "@mui/material": "^7.3.6",
26
+ "@types/file-saver-es": "^2.0.3",
27
+ "copy-to-clipboard": "^3.3.3",
28
+ "file-saver-es": "^2.0.5",
29
+ "mobx": "^6.15.0",
30
+ "mobx-react": "^9.2.1",
31
+ "@jbrowse/product-core": "^4.0.0",
32
+ "@jbrowse/core": "^4.0.0"
51
33
  },
52
34
  "peerDependencies": {
53
35
  "react": ">=18.0.0",
@@ -56,6 +38,19 @@
56
38
  "publishConfig": {
57
39
  "access": "public"
58
40
  },
59
- "module": "esm/index.js",
60
- "gitHead": "85bdd0d58286b7adbfd408146b15847676317635"
61
- }
41
+ "sideEffects": false,
42
+ "scripts": {
43
+ "prebuild": "pnpm clean",
44
+ "build": "pnpm run /^build:/",
45
+ "build:esm": "tsc -p tsconfig.build.esm.json",
46
+ "clean": "rimraf esm *.tsbuildinfo",
47
+ "test": "cd ../..; jest --passWithNoTests plugins/linear-genome-view"
48
+ },
49
+ "types": "esm/index.d.ts",
50
+ "exports": {
51
+ ".": {
52
+ "types": "./esm/index.d.ts",
53
+ "import": "./esm/index.js"
54
+ }
55
+ }
56
+ }
@@ -1,8 +0,0 @@
1
- import type { BaseLinearDisplayModel } from '../model';
2
- declare const BaseLinearDisplay: (props: {
3
- model: BaseLinearDisplayModel;
4
- children?: React.ReactNode;
5
- }) => import("react/jsx-runtime").JSX.Element;
6
- export default BaseLinearDisplay;
7
- export { default as Tooltip } from './Tooltip';
8
- export { default as BlockMsg } from './BlockMsg';
@@ -1,57 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.BlockMsg = exports.Tooltip = void 0;
7
- const jsx_runtime_1 = require("react/jsx-runtime");
8
- const react_1 = require("react");
9
- const configuration_1 = require("@jbrowse/core/configuration");
10
- const mobx_react_1 = require("mobx-react");
11
- const mui_1 = require("tss-react/mui");
12
- const LinearBlocks_1 = __importDefault(require("./LinearBlocks"));
13
- const MenuPage_1 = __importDefault(require("./MenuPage"));
14
- const useStyles = (0, mui_1.makeStyles)()({
15
- display: {
16
- position: 'relative',
17
- whiteSpace: 'nowrap',
18
- textAlign: 'left',
19
- width: '100%',
20
- minHeight: '100%',
21
- },
22
- });
23
- const BaseLinearDisplay = (0, mobx_react_1.observer)(function (props) {
24
- const { classes } = useStyles();
25
- const ref = (0, react_1.useRef)(null);
26
- const [clientRect, setClientRect] = (0, react_1.useState)();
27
- const [offsetMouseCoord, setOffsetMouseCoord] = (0, react_1.useState)([0, 0]);
28
- const [clientMouseCoord, setClientMouseCoord] = (0, react_1.useState)([0, 0]);
29
- const [contextCoord, setContextCoord] = (0, react_1.useState)();
30
- const { model, children } = props;
31
- const { TooltipComponent, DisplayMessageComponent, height } = model;
32
- return ((0, jsx_runtime_1.jsxs)("div", { ref: ref, "data-testid": `display-${(0, configuration_1.getConf)(model, 'displayId')}`, className: classes.display, onContextMenu: event => {
33
- event.preventDefault();
34
- if (contextCoord) {
35
- setContextCoord(undefined);
36
- }
37
- else if (ref.current) {
38
- setContextCoord([event.clientX, event.clientY]);
39
- }
40
- }, onMouseMove: event => {
41
- if (!ref.current) {
42
- return;
43
- }
44
- const rect = ref.current.getBoundingClientRect();
45
- const { left, top } = rect;
46
- setOffsetMouseCoord([event.clientX - left, event.clientY - top]);
47
- setClientMouseCoord([event.clientX, event.clientY]);
48
- setClientRect(rect);
49
- }, children: [DisplayMessageComponent ? ((0, jsx_runtime_1.jsx)(DisplayMessageComponent, { model: model })) : ((0, jsx_runtime_1.jsx)(LinearBlocks_1.default, { ...props })), children, (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(TooltipComponent, { model: model, height: height, offsetMouseCoord: offsetMouseCoord, clientMouseCoord: clientMouseCoord, clientRect: clientRect, mouseCoord: offsetMouseCoord }) }), contextCoord ? ((0, jsx_runtime_1.jsx)(MenuPage_1.default, { contextCoord: contextCoord, model: model, onClose: () => {
50
- setContextCoord(undefined);
51
- } })) : null] }));
52
- });
53
- exports.default = BaseLinearDisplay;
54
- var Tooltip_1 = require("./Tooltip");
55
- Object.defineProperty(exports, "Tooltip", { enumerable: true, get: function () { return __importDefault(Tooltip_1).default; } });
56
- var BlockMsg_1 = require("./BlockMsg");
57
- Object.defineProperty(exports, "BlockMsg", { enumerable: true, get: function () { return __importDefault(BlockMsg_1).default; } });
@@ -1,14 +0,0 @@
1
- import type { BaseBlock } from '@jbrowse/core/util/blockTypes';
2
- declare const ContentBlock: ({ block, children, }: {
3
- block: BaseBlock;
4
- children: React.ReactNode;
5
- }) => import("react/jsx-runtime").JSX.Element;
6
- declare function ElidedBlock({ width }: {
7
- width: number;
8
- }): import("react/jsx-runtime").JSX.Element;
9
- declare function InterRegionPaddingBlock({ boundary, width, style, }: {
10
- boundary: boolean;
11
- width: number;
12
- style?: React.CSSProperties;
13
- }): import("react/jsx-runtime").JSX.Element;
14
- export { ContentBlock, ElidedBlock, InterRegionPaddingBlock };
@@ -1,50 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.ContentBlock = void 0;
4
- exports.ElidedBlock = ElidedBlock;
5
- exports.InterRegionPaddingBlock = InterRegionPaddingBlock;
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const mobx_react_1 = require("mobx-react");
8
- const mui_1 = require("tss-react/mui");
9
- const useStyles = (0, mui_1.makeStyles)()(theme => ({
10
- contentBlock: {
11
- position: 'relative',
12
- minHeight: '100%',
13
- boxSizing: 'border-box',
14
- whiteSpace: 'nowrap',
15
- overflow: 'hidden',
16
- },
17
- elidedBlock: {
18
- minHeight: '100%',
19
- boxSizing: 'border-box',
20
- backgroundColor: '#999',
21
- backgroundImage: 'repeating-linear-gradient(90deg, transparent, transparent 1px, rgba(255,255,255,.5) 1px, rgba(255,255,255,.5) 3px)',
22
- },
23
- interRegionPaddingBlock: {
24
- minHeight: '100%',
25
- backgroundColor: theme.palette.text.disabled,
26
- },
27
- boundaryPaddingBlock: {
28
- minHeight: '100%',
29
- backgroundColor: theme.palette.action.disabledBackground,
30
- },
31
- }));
32
- const ContentBlock = (0, mobx_react_1.observer)(function ({ block, children, }) {
33
- const { classes } = useStyles();
34
- const { widthPx } = block;
35
- return ((0, jsx_runtime_1.jsx)("div", { style: { width: widthPx }, className: classes.contentBlock, children: children }));
36
- });
37
- exports.ContentBlock = ContentBlock;
38
- function ElidedBlock({ width }) {
39
- const { classes } = useStyles();
40
- return (0, jsx_runtime_1.jsx)("div", { className: classes.elidedBlock, style: { width } });
41
- }
42
- function InterRegionPaddingBlock({ boundary, width, style = {}, }) {
43
- const { classes } = useStyles();
44
- return ((0, jsx_runtime_1.jsx)("div", { style: {
45
- ...style,
46
- width,
47
- }, className: boundary
48
- ? classes.boundaryPaddingBlock
49
- : classes.interRegionPaddingBlock }));
50
- }
@@ -1,7 +0,0 @@
1
- declare const BlockErrorMessage: ({ model, }: {
2
- model: {
3
- error?: unknown;
4
- reload: () => void;
5
- };
6
- }) => import("react/jsx-runtime").JSX.Element;
7
- export default BlockErrorMessage;
@@ -1,27 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const ErrorMessageStackTraceDialog_1 = __importDefault(require("@jbrowse/core/ui/ErrorMessageStackTraceDialog"));
8
- const util_1 = require("@jbrowse/core/util");
9
- const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
10
- const Report_1 = __importDefault(require("@mui/icons-material/Report"));
11
- const material_1 = require("@mui/material");
12
- const mobx_react_1 = require("mobx-react");
13
- const BlockMsg_1 = __importDefault(require("./BlockMsg"));
14
- const BlockErrorMessage = (0, mobx_react_1.observer)(function ({ model, }) {
15
- return ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { message: `${model.error}`, severity: "error", action: (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Reload track", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
16
- model.reload();
17
- }, children: (0, jsx_runtime_1.jsx)(Refresh_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Show stack trace", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
18
- (0, util_1.getSession)(model).queueDialog(onClose => [
19
- ErrorMessageStackTraceDialog_1.default,
20
- {
21
- onClose,
22
- error: model.error,
23
- },
24
- ]);
25
- }, children: (0, jsx_runtime_1.jsx)(Report_1.default, {}) }) })] }) }));
26
- });
27
- exports.default = BlockErrorMessage;
@@ -1,6 +0,0 @@
1
- declare const BlockLoadingMessage: ({ model, }: {
2
- model: {
3
- status?: string;
4
- };
5
- }) => import("react/jsx-runtime").JSX.Element;
6
- export default BlockLoadingMessage;
@@ -1,26 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const jsx_runtime_1 = require("react/jsx-runtime");
4
- const ui_1 = require("@jbrowse/core/ui");
5
- const mobx_react_1 = require("mobx-react");
6
- const mobx_state_tree_1 = require("mobx-state-tree");
7
- const mui_1 = require("tss-react/mui");
8
- const useStyles = (0, mui_1.makeStyles)()(theme => {
9
- const bg = theme.palette.action.disabledBackground;
10
- return {
11
- loading: {
12
- paddingLeft: '0.6em',
13
- backgroundColor: theme.palette.background.default,
14
- backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
15
- textAlign: 'center',
16
- },
17
- };
18
- });
19
- const BlockLoadingMessage = (0, mobx_react_1.observer)(function ({ model, }) {
20
- const { classes } = useStyles();
21
- const { status: blockStatus } = model;
22
- const { message: displayStatus } = (0, mobx_state_tree_1.getParent)(model, 2);
23
- const status = displayStatus || blockStatus;
24
- return ((0, jsx_runtime_1.jsx)("div", { className: classes.loading, children: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { message: status }) }));
25
- });
26
- exports.default = BlockLoadingMessage;
@@ -1,6 +0,0 @@
1
- import type { AlertColor } from '@mui/material';
2
- export default function BlockMsg({ message, severity, action, }: {
3
- message: string;
4
- severity?: AlertColor;
5
- action?: React.ReactNode;
6
- }): import("react/jsx-runtime").JSX.Element;
@@ -1,22 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.default = BlockMsg;
4
- const jsx_runtime_1 = require("react/jsx-runtime");
5
- const material_1 = require("@mui/material");
6
- const mui_1 = require("tss-react/mui");
7
- const useStyles = (0, mui_1.makeStyles)()({
8
- ellipses: {
9
- textOverflow: 'ellipsis',
10
- overflow: 'hidden',
11
- },
12
- });
13
- function BlockMsg({ message, severity, action, }) {
14
- const { classes } = useStyles();
15
- return ((0, jsx_runtime_1.jsx)(material_1.Alert, { severity: severity, action: action, classes: {
16
- message: classes.ellipses,
17
- }, onMouseDown: event => {
18
- event.stopPropagation();
19
- }, onClick: event => {
20
- event.stopPropagation();
21
- }, children: (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: message, children: (0, jsx_runtime_1.jsx)("div", { children: message }) }) }));
22
- }
@@ -1,5 +0,0 @@
1
- import type { BaseLinearDisplayModel } from '../model';
2
- declare const LinearBlocks: ({ model, }: {
3
- model: BaseLinearDisplayModel;
4
- }) => import("react/jsx-runtime").JSX.Element;
5
- export default LinearBlocks;
@@ -1,28 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const util_1 = require("@jbrowse/core/util");
8
- const mobx_react_1 = require("mobx-react");
9
- const mui_1 = require("tss-react/mui");
10
- const RenderedBlocks_1 = __importDefault(require("./RenderedBlocks"));
11
- const useStyles = (0, mui_1.makeStyles)()({
12
- linearBlocks: {
13
- whiteSpace: 'nowrap',
14
- textAlign: 'left',
15
- position: 'absolute',
16
- minHeight: '100%',
17
- display: 'flex',
18
- },
19
- });
20
- const LinearBlocks = (0, mobx_react_1.observer)(function ({ model, }) {
21
- const { classes } = useStyles();
22
- const { blockDefinitions } = model;
23
- const viewModel = (0, util_1.getContainingView)(model);
24
- return ((0, jsx_runtime_1.jsx)("div", { className: classes.linearBlocks, style: {
25
- left: blockDefinitions.offsetPx - viewModel.offsetPx,
26
- }, children: (0, jsx_runtime_1.jsx)(RenderedBlocks_1.default, { model: model }) }));
27
- });
28
- exports.default = LinearBlocks;
@@ -1,3 +0,0 @@
1
- export default function MaxHeightReached({ top }: {
2
- top: number;
3
- }): import("react/jsx-runtime").JSX.Element;
@@ -1,27 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.default = MaxHeightReached;
4
- const jsx_runtime_1 = require("react/jsx-runtime");
5
- const mui_1 = require("tss-react/mui");
6
- const useStyles = (0, mui_1.makeStyles)()({
7
- heightOverflowed: {
8
- position: 'absolute',
9
- color: 'rgb(77,77,77)',
10
- borderBottom: '2px solid rgb(77,77,77)',
11
- textShadow: 'white 0px 0px 1px',
12
- whiteSpace: 'nowrap',
13
- width: '100%',
14
- fontWeight: 'bold',
15
- textAlign: 'center',
16
- zIndex: 999,
17
- boxSizing: 'border-box',
18
- },
19
- });
20
- function MaxHeightReached({ top }) {
21
- const { classes } = useStyles();
22
- return ((0, jsx_runtime_1.jsx)("div", { className: classes.heightOverflowed, style: {
23
- top,
24
- pointerEvents: 'none',
25
- height: 16,
26
- }, children: "Max height reached" }));
27
- }
@@ -1,8 +0,0 @@
1
- import type { Coord } from './types';
2
- import type { BaseLinearDisplayModel } from '../model';
3
- declare const MenuPage: ({ onClose, contextCoord, model, }: {
4
- model: BaseLinearDisplayModel;
5
- contextCoord: Coord;
6
- onClose: () => void;
7
- }) => import("react/jsx-runtime").JSX.Element;
8
- export default MenuPage;
@@ -1,26 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const jsx_runtime_1 = require("react/jsx-runtime");
4
- const ui_1 = require("@jbrowse/core/ui");
5
- const mobx_react_1 = require("mobx-react");
6
- const MenuPage = (0, mobx_react_1.observer)(function ({ onClose, contextCoord, model, }) {
7
- const items = model.contextMenuItems();
8
- return ((0, jsx_runtime_1.jsx)(ui_1.Menu, { open: items.length > 0, onMenuItemClick: (_, callback) => {
9
- callback();
10
- onClose();
11
- }, onClose: () => {
12
- onClose();
13
- model.setContextMenuFeature(undefined);
14
- }, slotProps: {
15
- transition: {
16
- onExit: () => {
17
- onClose();
18
- model.setContextMenuFeature(undefined);
19
- },
20
- },
21
- }, anchorReference: "anchorPosition", anchorPosition: {
22
- top: contextCoord[1],
23
- left: contextCoord[0],
24
- }, menuItems: items }));
25
- });
26
- exports.default = MenuPage;
@@ -1,9 +0,0 @@
1
- import type { BlockSet } from '@jbrowse/core/util/blockTypes';
2
- declare const RenderedBlocks: ({ model, }: {
3
- model: {
4
- id: string;
5
- blockDefinitions: BlockSet;
6
- blockState: any;
7
- };
8
- }) => import("react/jsx-runtime").JSX.Element[];
9
- export default RenderedBlocks;
@@ -1,27 +0,0 @@
1
- "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
- Object.defineProperty(exports, "__esModule", { value: true });
6
- const jsx_runtime_1 = require("react/jsx-runtime");
7
- const mobx_react_1 = require("mobx-react");
8
- const Block_1 = require("./Block");
9
- const MaxHeightReachedIndicator_1 = __importDefault(require("./MaxHeightReachedIndicator"));
10
- const RenderedBlocks = (0, mobx_react_1.observer)(function ({ model, }) {
11
- const { blockDefinitions, blockState } = model;
12
- return blockDefinitions.map(block => {
13
- const key = `${model.id}-${block.key}`;
14
- if (block.type === 'ContentBlock') {
15
- const state = blockState.get(block.key);
16
- return ((0, jsx_runtime_1.jsxs)(Block_1.ContentBlock, { block: block, children: [(state === null || state === void 0 ? void 0 : state.ReactComponent) ? ((0, jsx_runtime_1.jsx)(state.ReactComponent, { model: state })) : null, (state === null || state === void 0 ? void 0 : state.maxHeightReached) ? ((0, jsx_runtime_1.jsx)(MaxHeightReachedIndicator_1.default, { top: state.layout.getTotalHeight() - 16 })) : null] }, key));
17
- }
18
- else if (block.type === 'ElidedBlock') {
19
- return (0, jsx_runtime_1.jsx)(Block_1.ElidedBlock, { width: block.widthPx }, key);
20
- }
21
- else if (block.type === 'InterRegionPaddingBlock') {
22
- return ((0, jsx_runtime_1.jsx)(Block_1.InterRegionPaddingBlock, { width: block.widthPx, style: { background: 'none' }, boundary: block.variant === 'boundary' }, key));
23
- }
24
- throw new Error(`invalid block type ${JSON.stringify(block)}`);
25
- });
26
- });
27
- exports.default = RenderedBlocks;
@@ -1,11 +0,0 @@
1
- declare const ServerSideRenderedBlockContent: ({ model, }: {
2
- model: {
3
- error?: unknown;
4
- reload: () => void;
5
- message: React.ReactNode;
6
- filled?: boolean;
7
- status?: string;
8
- reactElement?: React.ReactElement;
9
- };
10
- }) => import("react/jsx-runtime").JSX.Element | undefined;
11
- export default ServerSideRenderedBlockContent;