@jbrowse/plugin-linear-genome-view 3.7.0 → 4.0.0

package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts

@@ -1,9 +0,0 @@
-import type { LinearGenomeViewModel } from '../..';
-import type BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-export default function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }: {
-    model: LinearGenomeViewModel;
-    assemblyName?: string;
-    searchQuery: string;
-    searchResults?: BaseResult[];
-    handleClose: () => void;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,15 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = SearchResultsDialog;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const SearchResultsTable_1 = __importDefault(require("./SearchResultsTable"));
-function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }) {
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results", children: [(0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: !(searchResults === null || searchResults === void 0 ? void 0 : searchResults.length) ? ((0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["No results found for ", (0, jsx_runtime_1.jsx)("b", { children: searchQuery })] })) : ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["Showing results for ", (0, jsx_runtime_1.jsx)("b", { children: searchQuery })] }), (0, jsx_runtime_1.jsx)(SearchResultsTable_1.default, { model: model, handleClose: handleClose, assemblyName: assemblyName, searchResults: searchResults })] })) }), (0, jsx_runtime_1.jsx)(material_1.Divider, {}), (0, jsx_runtime_1.jsx)(material_1.DialogActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                        handleClose();
-                    }, color: "primary", children: "Cancel" }) })] }));
-}

package/dist/LinearGenomeView/components/SearchResultsTable.d.ts

@@ -1,8 +0,0 @@
-import type { LinearGenomeViewModel } from '../..';
-import type BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-export default function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }: {
-    searchResults: BaseResult[];
-    assemblyName?: string;
-    model: LinearGenomeViewModel;
-    handleClose: () => void;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/LinearGenomeView/components/SearchResultsTable.js

@@ -1,74 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = SearchResultsTable;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const searchUtils_1 = require("../../searchUtils");
-function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }) {
-    const session = (0, util_1.getSession)(model);
-    const { pluginManager } = (0, util_1.getEnv)(session);
-    const { assemblyManager } = session;
-    const assemblyName = optAssemblyName || model.displayedRegions[0].assemblyName;
-    const assembly = assemblyManager.get(assemblyName);
-    if (!assembly) {
-        throw new Error(`assembly ${assemblyName} not found`);
-    }
-    if (!assembly.regions) {
-        throw new Error(`assembly ${assemblyName} regions not loaded`);
-    }
-    function getTrackName(trackId) {
-        var _a;
-        if (trackId) {
-            const schema = pluginManager.pluggableConfigSchemaType('track');
-            const configuration = (0, mobx_state_tree_1.resolveIdentifier)(schema, (0, mobx_state_tree_1.getRoot)(model), trackId);
-            return ((_a = configuration === null || configuration === void 0 ? void 0 : configuration.name) === null || _a === void 0 ? void 0 : _a.value) || '';
-        }
-        return '';
-    }
-    async function handleClick(result) {
-        var _a;
-        if (result.hasLocation()) {
-            await (0, searchUtils_1.navToOption)({
-                option: result,
-                model,
-                assemblyName,
-            });
-        }
-        else {
-            const location = result.getLabel();
-            const newRegion = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.find(region => location === region.refName);
-            if (newRegion) {
-                model.setDisplayedRegions([newRegion]);
-                model.showAllRegions();
-            }
-        }
-    }
-    return ((0, jsx_runtime_1.jsx)(material_1.TableContainer, { component: material_1.Paper, children: (0, jsx_runtime_1.jsxs)(material_1.Table, { children: [(0, jsx_runtime_1.jsx)(material_1.TableHead, { children: (0, jsx_runtime_1.jsxs)(material_1.TableRow, { children: [(0, jsx_runtime_1.jsx)(material_1.TableCell, { children: "Name" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: "Location" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: "Track" }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right" })] }) }), (0, jsx_runtime_1.jsx)(material_1.TableBody, { children: searchResults.map(result => {
-                        const locString = result.getLocation();
-                        let loc;
-                        try {
-                            loc = locString
-                                ? (0, util_1.parseLocString)(locString, refName => assembly.isValidRefName(refName))
-                                : undefined;
-                        }
-                        catch (e) { }
-                        return ((0, jsx_runtime_1.jsxs)(material_1.TableRow, { children: [(0, jsx_runtime_1.jsx)(material_1.TableCell, { component: "th", scope: "row", children: result.getLabel() }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: loc
-                                        ? (0, util_1.assembleLocString)({
-                                            ...loc,
-                                            refName: assembly.getCanonicalRefName(loc.refName) ||
-                                                loc.refName,
-                                        })
-                                        : locString }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: getTrackName(result.getTrackId()) || 'N/A' }), (0, jsx_runtime_1.jsx)(material_1.TableCell, { align: "right", children: (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: async () => {
-                                            try {
-                                                await handleClick(result);
-                                            }
-                                            catch (e) {
-                                                console.error(e);
-                                                session.notifyError(`${e}`, e);
-                                            }
-                                            handleClose();
-                                        }, color: "primary", variant: "contained", children: "Go" }) })] }, result.getId()));
-                    }) })] }) }));
-}

package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts

@@ -1,8 +0,0 @@
-declare const SequenceSearchDialog: ({ model, handleClose, }: {
-    model: {
-        assemblyNames: string[];
-        showTrack: (trackId: string) => void;
-    };
-    handleClose: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default SequenceSearchDialog;

package/dist/LinearGenomeView/components/SequenceSearchDialog.js

@@ -1,67 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    dialogContent: {
-        width: '40em',
-    },
-});
-const SequenceSearchDialog = (0, mobx_react_1.observer)(function ({ model, handleClose, }) {
-    const { classes } = useStyles();
-    const [value, setValue] = (0, react_1.useState)('');
-    const [searchForward, setSearchForward] = (0, react_1.useState)(true);
-    const [searchReverse, setSearchReverse] = (0, react_1.useState)(true);
-    const [caseInsensitive, setCaseInsensitive] = (0, react_1.useState)(true);
-    let error;
-    try {
-        new RegExp(value);
-    }
-    catch (e) {
-        error = e;
-    }
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Sequence search", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.dialogContent, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: value, onChange: e => {
-                            setValue(e.target.value);
-                        }, helperText: "Sequence search pattern" }), (0, jsx_runtime_1.jsxs)(material_1.FormGroup, { children: [(0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: searchForward, onChange: event => {
-                                        setSearchForward(event.target.checked);
-                                    } }), label: "Search forward strand" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: searchReverse, onChange: event => {
-                                        setSearchReverse(event.target.checked);
-                                    } }), label: "Search reverse strand" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: caseInsensitive, onChange: event => {
-                                        setCaseInsensitive(event.target.checked);
-                                    } }), label: "Case insensitive" })] }), error ? (0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: `${error}` }) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                            var _a;
-                            if (value) {
-                                const trackId = `sequence_search_${Date.now()}`;
-                                const session = (0, util_1.getSession)(model);
-                                const { assemblyManager } = session;
-                                const assemblyName = model.assemblyNames[0];
-                                if ((0, util_1.isSessionWithAddTracks)(session)) {
-                                    session.addTrackConf({
-                                        trackId,
-                                        name: `Sequence search ${value}`,
-                                        assemblyNames: [assemblyName],
-                                        type: 'FeatureTrack',
-                                        adapter: {
-                                            type: 'SequenceSearchAdapter',
-                                            search: value,
-                                            searchForward,
-                                            searchReverse,
-                                            caseInsensitive,
-                                            sequenceAdapter: (0, mobx_state_tree_1.getSnapshot)((_a = assemblyManager.get(assemblyName)) === null || _a === void 0 ? void 0 : _a.configuration.sequence.adapter),
-                                        },
-                                    });
-                                    model.showTrack(trackId);
-                                }
-                            }
-                            handleClose();
-                        }, variant: "contained", color: "primary", children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
-                            handleClose();
-                        }, variant: "contained", color: "secondary", children: "Close" })] })] }));
-});
-exports.default = SequenceSearchDialog;

package/dist/LinearGenomeView/components/TrackContainer.d.ts

@@ -1,8 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-type LGV = LinearGenomeViewModel;
-declare const TrackContainer: ({ model, track, }: {
-    model: LGV;
-    track: BaseTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackContainer;

package/dist/LinearGenomeView/components/TrackContainer.js

@@ -1,55 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const ErrorBoundary_1 = require("@jbrowse/core/ui/ErrorBoundary");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const Gridlines_1 = __importDefault(require("./Gridlines"));
-const TrackLabelContainer_1 = __importDefault(require("./TrackLabelContainer"));
-const TrackRenderingContainer_1 = __importDefault(require("./TrackRenderingContainer"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    root: {
-        marginTop: 2,
-        overflow: 'hidden',
-        position: 'relative',
-    },
-    unpinnedTrack: {
-        background: 'none',
-    },
-    resizeHandle: {
-        height: 4,
-        boxSizing: 'border-box',
-        position: 'relative',
-        background: 'transparent',
-        '&:hover': {
-            background: theme.palette.divider,
-        },
-    },
-}));
-const TrackContainer = (0, mobx_react_1.observer)(function ({ model, track, }) {
-    const { classes, cx } = useStyles();
-    const display = track.displays[0];
-    const { draggingTrackId, showTrackOutlines } = model;
-    const ref = (0, react_1.useRef)(null);
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { ref: ref, className: cx(classes.root, track.pinned ? null : classes.unpinnedTrack), variant: showTrackOutlines ? 'outlined' : undefined, elevation: showTrackOutlines ? undefined : 0, onClick: event => {
-            var _a;
-            if (event.detail === 2 && !track.displays[0].featureIdUnderMouse) {
-                const left = ((_a = ref.current) === null || _a === void 0 ? void 0 : _a.getBoundingClientRect().left) || 0;
-                model.zoomTo(model.bpPerPx / 2, event.clientX - left, true);
-            }
-        }, children: [track.pinned ? (0, jsx_runtime_1.jsx)(Gridlines_1.default, { model: model, offset: 1 }) : null, (0, jsx_runtime_1.jsx)(TrackLabelContainer_1.default, { track: track, view: model }), (0, jsx_runtime_1.jsx)(ErrorBoundary_1.ErrorBoundary, { FallbackComponent: e => (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: e.error }), children: (0, jsx_runtime_1.jsx)(TrackRenderingContainer_1.default, { model: model, track: track, onDragEnter: () => {
-                        if ((0, mobx_state_tree_1.isAlive)(display) &&
-                            draggingTrackId !== undefined &&
-                            draggingTrackId !== display.id) {
-                            model.moveTrack(draggingTrackId, track.id);
-                        }
-                    } }) }), (0, jsx_runtime_1.jsx)(ui_1.ResizeHandle, { onDrag: display.resizeHeight, className: classes.resizeHandle })] }));
-});
-exports.default = TrackContainer;

package/dist/LinearGenomeView/components/TrackLabel.d.ts

@@ -1,7 +0,0 @@
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-interface Props {
-    track: BaseTrackModel;
-    className?: string;
-}
-declare const TrackLabel: import("react").ForwardRefExoticComponent<Props & import("react").RefAttributes<HTMLDivElement>>;
-export default TrackLabel;

package/dist/LinearGenomeView/components/TrackLabel.js

@@ -1,49 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const TrackLabelDragHandle_1 = __importDefault(require("./TrackLabelDragHandle"));
-const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    root: {
-        zIndex: 200,
-        background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
-        '&:hover': {
-            background: theme.palette.background.paper,
-        },
-    },
-    trackName: {
-        fontSize: '0.8rem',
-    },
-    iconButton: {
-        padding: theme.spacing(1),
-    },
-}));
-const TrackLabel = (0, mobx_react_1.observer)((0, react_1.forwardRef)(function TrackLabel2({ track, className }, ref) {
-    const { classes, cx } = useStyles();
-    const view = (0, util_1.getContainingView)(track);
-    const session = (0, util_1.getSession)(track);
-    const trackConf = track.configuration;
-    const { minimized } = track;
-    const trackId = (0, configuration_1.getConf)(track, 'trackId');
-    const trackName = (0, tracks_1.getTrackName)(trackConf, session);
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { ref: ref, className: cx(className, classes.root), onClick: event => {
-            event.stopPropagation();
-        }, children: [(0, jsx_runtime_1.jsx)(TrackLabelDragHandle_1.default, { track: track, trackId: trackId, view: view }), (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", children: (0, jsx_runtime_1.jsx)(Close_1.default, { fontSize: "small" }) }), (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName, onMouseDown: event => {
-                    event.stopPropagation();
-                }, children: (0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: [trackName, minimized ? '(minimized)' : '']
-                        .filter(f => !!f)
-                        .join(' ') }) }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { track: track })] }));
-}));
-exports.default = TrackLabel;

package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts

@@ -1,8 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-type LGV = LinearGenomeViewModel;
-declare const TrackLabelContainer: ({ track, view, }: {
-    track: BaseTrackModel;
-    view: LGV;
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default TrackLabelContainer;

package/dist/LinearGenomeView/components/TrackLabelContainer.js

@@ -1,31 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const TrackLabel_1 = __importDefault(require("./TrackLabel"));
-const useStyles = (0, mui_1.makeStyles)()({
-    trackLabel: {
-        zIndex: 2,
-    },
-    trackLabelOffset: {
-        position: 'relative',
-        display: 'inline-block',
-    },
-    trackLabelOverlap: {
-        position: 'absolute',
-    },
-});
-const TrackLabelContainer = (0, mobx_react_1.observer)(function ({ track, view, }) {
-    const { classes, cx } = useStyles();
-    const display = track.displays[0];
-    const { trackLabel, trackLabelOverlap, trackLabelOffset } = classes;
-    const labelStyle = view.trackLabelsSetting !== 'overlapping' || display.prefersOffset
-        ? trackLabelOffset
-        : trackLabelOverlap;
-    return view.trackLabelsSetting !== 'hidden' ? ((0, jsx_runtime_1.jsx)(TrackLabel_1.default, { track: track, className: cx(trackLabel, labelStyle) })) : null;
-});
-exports.default = TrackLabelContainer;

package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts

@@ -1,8 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-declare function TrackLabelDragHandle({ trackId, view, track, }: {
-    trackId: string;
-    track: BaseTrackModel;
-    view: LinearGenomeViewModel;
-}): import("react/jsx-runtime").JSX.Element;
-export default TrackLabelDragHandle;

package/dist/LinearGenomeView/components/TrackLabelDragHandle.js

@@ -1,32 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const DragIndicator_1 = __importDefault(require("@mui/icons-material/DragIndicator"));
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    dragHandle: {
-        cursor: 'grab',
-    },
-    dragHandleIcon: {
-        display: 'inline-block',
-        verticalAlign: 'middle',
-        pointerEvents: 'none',
-    },
-});
-function TrackLabelDragHandle({ trackId, view, track, }) {
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsx)("span", { draggable: true, className: classes.dragHandle, onDragStart: event => {
-            const target = event.currentTarget;
-            if (target.parentNode) {
-                const parent = target.parentNode;
-                event.dataTransfer.setDragImage(parent, 20, 20);
-                view.setDraggingTrackId(track.id);
-            }
-        }, onDragEnd: () => {
-            view.setDraggingTrackId(undefined);
-        }, "data-testid": `dragHandle-${view.id}-${trackId}`, children: (0, jsx_runtime_1.jsx)(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" }) }));
-}
-exports.default = TrackLabelDragHandle;

package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts

@@ -1,5 +0,0 @@
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-declare const TrackLabelMenu: ({ track, }: {
-    track: BaseTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackLabelMenu;

package/dist/LinearGenomeView/components/TrackLabelMenu.js

@@ -1,93 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
-const util_1 = require("@jbrowse/core/util");
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
-const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
-const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
-const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
-const Minimize_1 = __importDefault(require("@mui/icons-material/Minimize"));
-const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
-const PushPin_1 = __importDefault(require("@mui/icons-material/PushPin"));
-const mobx_react_1 = require("mobx-react");
-const TrackLabelMenu = (0, mobx_react_1.observer)(function ({ track, }) {
-    var _a;
-    const view = (0, util_1.getContainingView)(track);
-    const session = (0, util_1.getSession)(track);
-    const trackConf = track.configuration;
-    const minimized = track.minimized;
-    const pinned = track.pinned;
-    const { isTopLevelView } = view;
-    const items = [
-        ...(!isTopLevelView
-            ? []
-            : [
-                {
-                    label: pinned ? 'Unpin track' : 'Pin track',
-                    icon: PushPin_1.default,
-                    onClick: () => {
-                        track.setPinned(!pinned);
-                    },
-                },
-            ]),
-        {
-            label: 'Track order',
-            type: 'subMenu',
-            priority: 2000,
-            subMenu: [
-                {
-                    label: minimized ? 'Restore track' : 'Minimize track',
-                    icon: minimized ? Add_1.default : Minimize_1.default,
-                    onClick: () => {
-                        track.setMinimized(!minimized);
-                    },
-                },
-                ...(view.tracks.length > 2
-                    ? [
-                        {
-                            label: 'Move track to top',
-                            icon: KeyboardDoubleArrowUp_1.default,
-                            onClick: () => {
-                                view.moveTrackToTop(track.id);
-                            },
-                        },
-                    ]
-                    : []),
-                {
-                    label: 'Move track up',
-                    icon: KeyboardArrowUp_1.default,
-                    onClick: () => {
-                        view.moveTrackUp(track.id);
-                    },
-                },
-                {
-                    label: 'Move track down',
-                    icon: KeyboardArrowDown_1.default,
-                    onClick: () => {
-                        view.moveTrackDown(track.id);
-                    },
-                },
-                ...(view.tracks.length > 2
-                    ? [
-                        {
-                            label: 'Move track to bottom',
-                            icon: KeyboardDoubleArrowDown_1.default,
-                            onClick: () => {
-                                view.moveTrackToBottom(track.id);
-                            },
-                        },
-                    ]
-                    : []),
-            ],
-        },
-        ...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
-        ...track.trackMenuItems(),
-    ].sort((a, b) => ((b === null || b === void 0 ? void 0 : b.priority) || 0) - ((a === null || a === void 0 ? void 0 : a.priority) || 0));
-    return ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { menuItems: items, "data-testid": "track_menu_icon", children: (0, jsx_runtime_1.jsx)(MoreVert_1.default, { fontSize: "small" }) }));
-});
-exports.default = TrackLabelMenu;

package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts

@@ -1,9 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-import type { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
-type LGV = LinearGenomeViewModel;
-declare const TrackRenderingContainer: ({ model, track, onDragEnter, }: {
-    model: LGV;
-    track: BaseTrackModel;
-    onDragEnter: () => void;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackRenderingContainer;

package/dist/LinearGenomeView/components/TrackRenderingContainer.js

@@ -1,50 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const ui_1 = require("@jbrowse/core/ui");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    renderingComponentContainer: {
-        position: 'absolute',
-        left: -1,
-        height: '100%',
-        width: '100%',
-    },
-    trackRenderingContainer: {
-        overflowY: 'auto',
-        overflowX: 'hidden',
-        whiteSpace: 'nowrap',
-        position: 'relative',
-        background: 'none',
-    },
-});
-const TrackRenderingContainer = (0, mobx_react_1.observer)(function ({ model, track, onDragEnter, }) {
-    const { classes } = useStyles();
-    const display = track.displays[0];
-    const { height, RenderingComponent, DisplayBlurb } = display;
-    const { trackRefs, id, scaleFactor } = model;
-    const trackId = (0, configuration_1.getConf)(track, 'trackId');
-    const ref = (0, react_1.useRef)(null);
-    const minimized = track.minimized;
-    (0, react_1.useEffect)(() => {
-        if (ref.current) {
-            trackRefs[trackId] = ref.current;
-        }
-        return () => {
-            delete trackRefs[trackId];
-        };
-    }, [trackRefs, trackId]);
-    return ((0, jsx_runtime_1.jsx)("div", { className: classes.trackRenderingContainer, style: {
-            height: minimized ? 20 : height,
-        }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: onDragEnter, "data-testid": `trackRenderingContainer-${id}-${trackId}`, children: !minimized ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("div", { ref: ref, className: classes.renderingComponentContainer, style: {
-                        transform: scaleFactor !== 1 ? `scaleX(${scaleFactor})` : undefined,
-                    }, children: (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {}), children: (0, jsx_runtime_1.jsx)(RenderingComponent, { model: display, onHorizontalScroll: model.horizontalScroll }) }) }), DisplayBlurb ? ((0, jsx_runtime_1.jsx)("div", { style: {
-                        position: 'absolute',
-                        left: 0,
-                        top: display.height - 20,
-                    }, children: (0, jsx_runtime_1.jsx)(DisplayBlurb, { model: display }) })) : null] })) : null }));
-});
-exports.default = TrackRenderingContainer;

package/dist/LinearGenomeView/components/TracksContainer.d.ts

@@ -1,7 +0,0 @@
-import type { LinearGenomeViewModel } from '..';
-type LGV = LinearGenomeViewModel;
-declare const TracksContainer: ({ children, model, }: {
-    children: React.ReactNode;
-    model: LGV;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TracksContainer;