@jbrowse/plugin-linear-genome-view 3.7.0 → 4.0.0

package/dist/LinearGenomeView/model.d.ts

@@ -1,268 +0,0 @@
-import type React from 'react';
-import type { BpOffset, ExportSvgOptions, HighlightType, InitState, NavLocation } from './types';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import type { MenuItem } from '@jbrowse/core/ui';
-import type { ParsedLocString } from '@jbrowse/core/util';
-import type { BaseBlock, BlockSet } from '@jbrowse/core/util/blockTypes';
-import type { Region } from '@jbrowse/core/util/types';
-import type { Instance } from 'mobx-state-tree';
-export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").IType<string | undefined, string, string>;
-    offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-    hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<HighlightType, HighlightType, HighlightType>>, [undefined]>;
-    colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    init: import("mobx-state-tree").IType<InitState | undefined, InitState | undefined, InitState | undefined>;
-}, {
-    width: number;
-} & {
-    menuItems(): MenuItem[];
-} & {
-    setDisplayName(name: string): void;
-    setWidth(newWidth: number): void;
-    setMinimized(flag: boolean): void;
-} & {
-    volatileWidth: number | undefined;
-    minimumBlockWidth: number;
-    draggingTrackId: undefined | string;
-    volatileError: unknown;
-    afterDisplayedRegionsSetCallbacks: (() => void)[];
-    scaleFactor: number;
-    trackRefs: Record<string, HTMLDivElement>;
-    coarseDynamicBlocks: BaseBlock[];
-    coarseTotalBp: number;
-    leftOffset: undefined | BpOffset;
-    rightOffset: undefined | BpOffset;
-} & {
-    readonly pinnedTracks: any[];
-    readonly unpinnedTracks: any[];
-    readonly trackLabelsSetting: any;
-    readonly width: number;
-    readonly interRegionPaddingWidth: number;
-    readonly assemblyNames: string[];
-    readonly assemblyDisplayNames: string[];
-    readonly isTopLevelView: boolean;
-    readonly stickyViewHeaders: boolean;
-    readonly rubberbandTop: number;
-    readonly pinnedTracksTop: number;
-} & {
-    scaleBarDisplayPrefix(): string | undefined;
-    MiniControlsComponent(): React.FC<any>;
-    HeaderComponent(): React.FC<any>;
-    readonly assembliesNotFound: string | undefined;
-    readonly assemblyErrors: string;
-    readonly assembliesInitialized: boolean;
-    readonly initialized: boolean;
-    readonly hasDisplayedRegions: boolean;
-    readonly scaleBarHeight: number;
-    readonly headerHeight: number;
-    readonly trackHeights: number;
-    readonly trackHeightsWithResizeHandles: number;
-    readonly height: number;
-    readonly totalBp: number;
-    readonly maxBpPerPx: number;
-    readonly minBpPerPx: number;
-    readonly error: unknown;
-    readonly maxOffset: number;
-    readonly minOffset: number;
-    readonly displayedRegionsTotalPx: number;
-    renderProps(): any;
-    searchScope(assemblyName: string): {
-        assemblyName: string;
-        includeAggregateIndexes: boolean;
-        tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-    };
-    getTrack(id: string): any;
-    rankSearchResults(results: BaseResult[]): BaseResult[];
-    rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
-    readonly trackTypeActions: Map<string, MenuItem[]>;
-} & {
-    setShowTrackOutlines(arg: boolean): void;
-    setColorByCDS(flag: boolean): void;
-    setShowCytobands(flag: boolean): void;
-    setWidth(newWidth: number): void;
-    setError(error: unknown): void;
-    setHideHeader(b: boolean): void;
-    setHideHeaderOverview(b: boolean): void;
-    setHideNoTracksActive(b: boolean): void;
-    setShowGridlines(b: boolean): void;
-    addToHighlights(highlight: HighlightType): void;
-    setHighlight(highlight?: HighlightType[]): void;
-    removeHighlight(highlight: HighlightType): void;
-    scrollTo(offsetPx: number): number;
-    zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-    setOffsets(left?: BpOffset, right?: BpOffset): void;
-    setSearchResults(searchResults: BaseResult[], searchQuery: string, assemblyName?: string): void;
-    setNewView(bpPerPx: number, offsetPx: number): void;
-    horizontallyFlip(): void;
-    showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-    hideTrack(trackId: string): number;
-} & {
-    moveTrackDown(id: string): void;
-    moveTrackUp(id: string): void;
-    moveTrackToTop(id: string): void;
-    moveTrackToBottom(id: string): void;
-    moveTrack(movingId: string, targetId: string): void;
-    toggleTrack(trackId: string): boolean;
-    setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-    setShowCenterLine(b: boolean): void;
-    setDisplayedRegions(regions: Region[]): void;
-    activateTrackSelector(): import("@jbrowse/core/util").Widget;
-    getSelectedRegions(leftOffset?: BpOffset, rightOffset?: BpOffset): {
-        start: number;
-        end: number;
-        type: string;
-        regionNumber?: number;
-        reversed?: boolean;
-        refName: string;
-        assemblyName: string;
-        key: string;
-        offsetPx: number;
-        widthPx: number;
-        variant?: string;
-        isLeftEndOfDisplayedRegion?: boolean;
-    }[];
-    afterDisplayedRegionsSet(cb: () => void): void;
-    horizontalScroll(distance: number): number;
-    center(): void;
-    showAllRegions(): void;
-    showAllRegionsInAssembly(assemblyName?: string): void;
-    setDraggingTrackId(idx?: string): void;
-    setScaleFactor(factor: number): void;
-    clearView(): void;
-    setInit(arg?: InitState): void;
-    exportSvg(opts?: ExportSvgOptions): Promise<void>;
-} & {
-    slide: (viewWidths: number) => void;
-} & {
-    zoom: (targetBpPerPx: number) => void;
-} & {
-    readonly canShowCytobands: boolean;
-    readonly showCytobands: boolean;
-    readonly anyCytobandsExist: boolean;
-    readonly cytobandOffset: number;
-} & {
-    menuItems(): MenuItem[];
-} & {
-    readonly staticBlocks: BlockSet;
-    readonly dynamicBlocks: BlockSet;
-    readonly roundedDynamicBlocks: BaseBlock[];
-    readonly visibleLocStrings: string;
-    readonly coarseVisibleLocStrings: string;
-} & {
-    setCoarseDynamicBlocks(blocks: BlockSet): void;
-} & {
-    moveTo(start?: BpOffset, end?: BpOffset): void;
-    navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
-    navToSearchString({ input, assembly, }: {
-        input: string;
-        assembly: Assembly;
-    }): Promise<void>;
-    navToLocation(parsedLocString: ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
-    navToLocations(regions: ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-    navTo(query: NavLocation): void;
-    navToMultiple(locations: NavLocation[]): void;
-} & {
-    rubberBandMenuItems(): MenuItem[];
-    bpToPx({ refName, coord, regionNumber, }: {
-        refName: string;
-        coord: number;
-        regionNumber?: number;
-    }): {
-        index: number;
-        offsetPx: number;
-    } | undefined;
-    centerAt(coord: number, refName: string, regionNumber?: number): void;
-    pxToBp(px: number): {
-        coord: number;
-        index: number;
-        refName: string;
-        oob: boolean;
-        assemblyName: string;
-        offset: number;
-        start: number;
-        end: number;
-        reversed?: boolean;
-    };
-    readonly centerLineInfo: {
-        coord: number;
-        index: number;
-        refName: string;
-        oob: boolean;
-        assemblyName: string;
-        offset: number;
-        start: number;
-        end: number;
-        reversed?: boolean;
-    } | undefined;
-} & {
-    afterCreate(): void;
-    afterAttach(): void;
-}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").IType<string | undefined, string, string>;
-    offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-    hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<HighlightType, HighlightType, HighlightType>>, [undefined]>;
-    colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    init: import("mobx-state-tree").IType<InitState | undefined, InitState | undefined, InitState | undefined>;
-}>>, {
-    type: string;
-    id: string;
-    displayName: string | undefined;
-    tracks: any[];
-    minimized: boolean;
-    offsetPx: number;
-    bpPerPx: number;
-    displayedRegions: Region[];
-    hideHeader: boolean;
-    hideHeaderOverview: boolean;
-    hideNoTracksActive: boolean;
-    trackSelectorType: string;
-    showCenterLine: boolean;
-    showCytobandsSetting: boolean;
-    trackLabels: string;
-    showGridlines: boolean;
-    highlight: HighlightType[];
-    colorByCDS: boolean;
-    showTrackOutlines: boolean;
-}>;
-export type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
-export type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
-export { default as LinearGenomeView, default as ReactComponent, } from './components/LinearGenomeView';
-export { default as RefNameAutocomplete } from './components/RefNameAutocomplete';
-export { default as SearchBox } from './components/SearchBox';
-export { renderToSvg } from './svgcomponents/SVGLinearGenomeView';