npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.4.0 → 2.4.2 - Mend

@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (176) hide show

package/esm/BaseLinearDisplay/models/util.d.ts CHANGED Viewed

@@ -1,3 +1,5 @@
+import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IAnyStateTreeNode } from 'mobx-state-tree';
 export interface RenderProps {
     rendererType: any;
     renderArgs: {
@@ -16,3 +18,5 @@ export interface ErrorProps {
     displayError: string;
 }
 export declare function getDisplayStr(totalBytes: number): string;
+export declare function getId(id: string, index: number): string;
+export declare function estimateRegionsStatsPre(self: IAnyStateTreeNode): Promise<Stats>;

package/esm/BaseLinearDisplay/models/util.js CHANGED Viewed

@@ -1,14 +1,44 @@
+import { getContainingView, getSession } from '@jbrowse/core/util';
+import { getRpcSessionId } from '@jbrowse/core/util/tracks';
+import { isAlive } from 'mobx-state-tree';
 export function getDisplayStr(totalBytes) {
     let displayBp;
     if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
     }
     else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
+        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
     }
     else {
         displayBp = `${Math.floor(totalBytes)} bytes`;
     }
     return displayBp;
 }
+// stabilize clipid under test for snapshot
+export function getId(id, index) {
+    const isJest = typeof jest === 'undefined';
+    return `clip-${isJest ? id : 'jest'}-${index}`;
+}
+export async function estimateRegionsStatsPre(self) {
+    const view = getContainingView(self);
+    const regions = view.staticBlocks.contentBlocks;
+    const { rpcManager } = getSession(self);
+    const { adapterConfig } = self;
+    if (!adapterConfig) {
+        // A track extending the base track might not have an adapter config
+        // e.g. Apollo tracks don't use adapters
+        return {};
+    }
+    const sessionId = getRpcSessionId(self);
+    return rpcManager.call(sessionId, 'CoreEstimateRegionStats', {
+        sessionId,
+        regions,
+        adapterConfig,
+        statusCallback: (message) => {
+            if (isAlive(self)) {
+                self.setMessage(message);
+            }
+        },
+    });
+}
 //# sourceMappingURL=util.js.map

package/esm/BaseLinearDisplay/models/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LaunchLinearGenomeView/index.js CHANGED Viewed

@@ -1,7 +1,7 @@
 import { when } from '@jbrowse/core/util';
 export default (pluginManager) => {
     pluginManager.addToExtensionPoint('LaunchView-LinearGenomeView',
-    // @ts-ignore
+    // @ts-expect-error
     async ({ session, assembly, loc, tracks = [], }) => {
         try {
             const { assemblyManager } = session;

package/esm/LaunchLinearGenomeView/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBareDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import { configSchemaFactory } from './configSchema';
-import { stateModelFactory } from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';

package/esm/LinearBareDisplay/index.js CHANGED Viewed

@@ -9,6 +9,7 @@ export default (pluginManager) => {
         return new DisplayType({
             name: 'LinearBareDisplay',
             configSchema,
+            displayName: 'Bare feature display',
             stateModel: stateModelFactory(configSchema),
             trackType: 'BasicTrack',
             viewType: 'LinearGenomeView',
@@ -16,5 +17,6 @@ export default (pluginManager) => {
         });
     });
 };
-export { configSchemaFactory, stateModelFactory };
+export { configSchemaFactory } from './configSchema';
+export { stateModelFactory } from './model';
 //# sourceMappingURL=index.js.map

package/esm/LinearBareDisplay/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBareDisplay/model.d.ts CHANGED Viewed

@@ -125,10 +125,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-    estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+    estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+    estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -139,7 +139,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
     readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
     readonly currentBytesRequested: number;
@@ -149,19 +149,16 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
+} & {
     afterAttach(): void;
-    estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-        headers?: Record<string, string> | undefined;
-        signal?: AbortSignal | undefined;
-        filters?: string[] | undefined;
-    }): Promise<{}>;
-    setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-    setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-    clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+    setRegionsStatsP(arg: any): void;
+    setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+    clearRegionsStats(): void;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
-    updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+    updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     setCurrBpPerPx(n: number): void;
     deleteBlock(key: string): void;
@@ -175,18 +172,13 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLargeReason: string;
 } & {
     reload(): Promise<void>;
+} & {
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    contextMenuItems(): {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    }[];
+    contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     renderProps(): any;
 } & {
     renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {

package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts CHANGED Viewed

@@ -2,7 +2,7 @@
 declare function SetMaxHeightDlg({ model, handleClose, }: {
     model: {
         maxHeight?: number;
-        setMaxHeight: Function;
+        setMaxHeight: (arg?: number) => void;
     };
     handleClose: () => void;
 }): JSX.Element;

package/esm/LinearBasicDisplay/components/SetMaxHeight.js CHANGED Viewed

@@ -3,14 +3,11 @@ import { observer } from 'mobx-react';
 import { Dialog } from '@jbrowse/core/ui';
 import { Button, DialogActions, DialogContent, Typography, TextField, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-const useStyles = makeStyles()(theme => ({
+const useStyles = makeStyles()({
     root: {
         width: 500,
     },
-    field: {
-        margin: theme.spacing(2),
-    },
-}));
+});
 function SetMaxHeightDlg({ model, handleClose, }) {
     const { classes } = useStyles();
     const { maxHeight = '' } = model;

package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearBasicDisplay/index.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import configSchema from './configSchema';
-import modelFactory from './model';
 declare const _default: (pluginManager: PluginManager) => void;
 export default _default;
-export { modelFactory, configSchema };
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';

package/esm/LinearBasicDisplay/index.js CHANGED Viewed

@@ -8,7 +8,7 @@ export default (pluginManager) => {
         const config = configSchema(pluginManager);
         return new DisplayType({
             name: 'LinearBasicDisplay',
-            displayName: 'Basic deature display',
+            displayName: 'Basic feature display',
             configSchema: config,
             stateModel: modelFactory(config),
             trackType: 'FeatureTrack',
@@ -17,5 +17,6 @@ export default (pluginManager) => {
         });
     });
 };
-export { modelFactory, configSchema };
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';
 //# sourceMappingURL=index.js.map

package/esm/LinearBasicDisplay/index.js.map CHANGED Viewed

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package/esm/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -139,9 +139,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-    /**
-     * #method
-     */
     trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): undefined;
@@ -155,10 +152,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     message: string;
     featureIdUnderMouse: string | undefined;
     contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-    estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-    estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+    estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+    estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
-    readonly height: any;
+    readonly height: number;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -169,7 +166,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
     readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
     searchFeatureByID(id: string): [number, number, number, number] | undefined;
     readonly currentBytesRequested: number;
@@ -179,19 +176,16 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
+} & {
     afterAttach(): void;
-    estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-        headers?: Record<string, string> | undefined;
-        signal?: AbortSignal | undefined;
-        filters?: string[] | undefined;
-    }): Promise<{}>;
-    setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-    setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-    clearRegionStats(): void;
-    setHeight(displayHeight: number): any;
+    estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+    setRegionsStatsP(arg: any): void;
+    setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+    clearRegionsStats(): void;
+    setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
-    updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+    updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     setCurrBpPerPx(n: number): void;
     deleteBlock(key: string): void;
@@ -205,18 +199,13 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly regionTooLargeReason: string;
 } & {
     reload(): Promise<void>;
+} & {
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): MenuItem[];
-    contextMenuItems(): {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    }[];
+    contextMenuItems(): MenuItem[];
     renderProps(): any;
 } & {
     renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
@@ -269,7 +258,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     /**
      * #action
      */
-    setMaxHeight(val: number): void;
+    setMaxHeight(val?: number): void;
 } & {
     /**
      * #method

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package/esm/LinearGenomeView/components/ExportSvgDialog.js CHANGED Viewed

@@ -31,7 +31,7 @@ export default function ExportSvgDlg({ model, handleClose, }) {
                 React.createElement(MenuItem, { value: "none" }, "None")),
             React.createElement("br", null),
             session.allThemes ? (React.createElement(TextField, { select: true, label: "Theme", variant: "outlined", value: themeName, onChange: event => setThemeName(event.target.value) }, Object.entries(session.allThemes()).map(([key, val]) => (React.createElement(MenuItem, { key: key, value: key },
-            // @ts-ignore
+            // @ts-expect-error
             val.name || '(Unknown name)'))))) : null,
             offscreenCanvas ? (React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: rasterizeLayers, onChange: () => setRasterizeLayers(val => !val) }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : (React.createElement(Typography, null, "Note: rasterizing layers not yet supported in this browser, so SVG size may be large"))),
         React.createElement(DialogActions, null,

package/esm/LinearGenomeView/components/ExportSvgDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/ImportForm.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare const ImportForm: ({ model }: {
+declare const _default: ({ model }: {
     model: LGV;
 }) => JSX.Element;
-export default ImportForm;
+export default _default;

package/esm/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -2,13 +2,14 @@ import React, { useState, useEffect, lazy } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
-import { Button, CircularProgress, FormControl, Container, Grid, } from '@mui/material';
+import { Button, FormControl, Container, Grid, CircularProgress, } from '@mui/material';
 import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui';
 // icons
 import CloseIcon from '@mui/icons-material/Close';
 // locals
 import RefNameAutocomplete from './RefNameAutocomplete';
 import { fetchResults, splitLast } from './util';
+// lazies
 const SearchResultsDialog = lazy(() => import('./SearchResultsDialog'));
 const useStyles = makeStyles()(theme => ({
     importFormContainer: {
@@ -21,7 +22,7 @@ const useStyles = makeStyles()(theme => ({
         padding: theme.spacing(4),
     },
 }));
-const ImportForm = observer(({ model }) => {
+export default observer(function ({ model }) {
     var _a;
     const { classes } = useStyles();
     const session = getSession(model);
@@ -34,14 +35,16 @@ const ImportForm = observer(({ model }) => {
     const assemblyError = assemblyNames.length
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
-    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const displayError = assemblyError || error;
     const [value, setValue] = useState('');
-    const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
-    // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change. needs to react to selectedAsm as well as r0 because changing
-    // assembly will run setValue('') and then r0 may not change if assembly names are the
-    // same across assemblies, but it still needs to be reset
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const assemblyLoaded = !!regions;
+    const r0 = regions ? (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName : '';
+    // useEffect resets to an "initial state" of displaying first region from
+    // assembly after assembly change. needs to react to selectedAsm as well as
+    // r0 because changing assembly will run setValue('') and then r0 may not
+    // change if assembly names are the same across assemblies, but it still
+    // needs to be reset
     useEffect(() => {
         setValue(r0);
     }, [r0, selectedAsm]);
@@ -73,7 +76,7 @@ const ImportForm = observer(({ model }) => {
                 const [ref, rest] = splitLast(input, ':');
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
-                    (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
+                    (allRefs.includes(ref) && !Number.isNaN(Number.parseInt(rest, 10)))) {
                     await model.navToLocString(input, selectedAsm);
                 }
                 else {
@@ -118,24 +121,18 @@ const ImportForm = observer(({ model }) => {
                 React.createElement(Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     React.createElement(Grid, { item: true },
                         React.createElement(FormControl, null,
-                            React.createElement(AssemblySelector, { onChange: val => {
-                                    setSelectedAsm(val);
-                                    setValue('');
-                                }, localStorageKey: "lgv", session: session, selected: selectedAsm }))),
-                    React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
+                            React.createElement(AssemblySelector, { onChange: val => setSelectedAsm(val), localStorageKey: "lgv", session: session, selected: selectedAsm }))),
+                    React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : assemblyLoaded ? (React.createElement(FormControl, null,
                         React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
                                 queryString,
                                 assembly,
                                 textSearchManager,
                                 rankSearchResults,
                                 searchScope,
-                            }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
-                            // note: minWidth 270 accommodates full width of helperText
-                            minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
+                            }), model: model, assemblyName: selectedAsm, value: value, minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
                                 variant: 'outlined',
                                 helperText: 'Enter sequence name, feature name, or location',
-                                style: { minWidth: '175px' },
-                            } }))) : (React.createElement(CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
+                            } }))) : (React.createElement(CircularProgress, { size: 20, disableShrink: true }))) : null),
                     React.createElement(Grid, { item: true },
                         React.createElement(FormControl, null,
                             React.createElement(Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open")),
@@ -146,5 +143,4 @@ const ImportForm = observer(({ model }) => {
                                 }, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
         isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
 });
-export default ImportForm;
 //# sourceMappingURL=ImportForm.js.map

package/esm/LinearGenomeView/components/ImportForm.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/LinearGenomeView/components/OverviewRubberband.d.ts CHANGED Viewed

@@ -2,10 +2,9 @@ import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function OverviewRubberband({ model, overview, ControlComponent, }: {
+declare const _default: ({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;
-    ControlComponent?: React.ReactElement;
-}): JSX.Element;
-declare const _default: typeof OverviewRubberband;
+    ControlComponent?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+}) => JSX.Element;
 export default _default;

package/esm/LinearGenomeView/components/OverviewRubberband.js CHANGED Viewed

@@ -19,7 +19,7 @@ const useStyles = makeStyles()({
         zIndex: 10,
     },
 });
-const HoverTooltip = observer(({ model, open, guideX, overview, }) => {
+const HoverTooltip = observer(function ({ model, open, guideX, overview, }) {
     var _a;
     const { classes } = useStyles();
     const { cytobandOffset } = model;
@@ -30,11 +30,9 @@ const HoverTooltip = observer(({ model, open, guideX, overview, }) => {
         px.coord < f.get('end') &&
         px.refName === assembly.getCanonicalRefName(f.get('refName')));
     return (React.createElement(Tooltip, { open: open, placement: "top", title: [stringify(px), cytoband === null || cytoband === void 0 ? void 0 : cytoband.get('name')].join(' '), arrow: true },
-        React.createElement("div", { className: classes.guide, style: {
-                left: guideX,
-            } })));
+        React.createElement("div", { className: classes.guide, style: { left: guideX } })));
 });
-function OverviewRubberband({ model, overview, ControlComponent = React.createElement("div", null), }) {
+export default observer(function OverviewRubberband({ model, overview, ControlComponent = React.createElement("div", null), }) {
     const { cytobandOffset } = model;
     const [startX, setStartX] = useState();
     const [currentX, setCurrentX] = useState();
@@ -107,7 +105,7 @@ function OverviewRubberband({ model, overview, ControlComponent = React.createEl
     if (startX === undefined) {
         return (React.createElement("div", { style: { position: 'relative' } },
             guideX !== undefined ? (React.createElement(HoverTooltip, { model: model, open: !mouseDragging, overview: overview, guideX: guideX })) : null,
-            React.createElement("div", { className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+            React.createElement("div", { className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
     }
     let left = startX || 0;
     let width = 0;
@@ -121,14 +119,13 @@ function OverviewRubberband({ model, overview, ControlComponent = React.createEl
     if (startX) {
         leftBpOffset = overview.pxToBp(startX - cytobandOffset);
         rightBpOffset = overview.pxToBp(startX + width - cytobandOffset);
-        if (currentX && currentX < startX) {
+        if (currentX !== undefined && currentX < startX) {
             ;
             [leftBpOffset, rightBpOffset] = [rightBpOffset, leftBpOffset];
         }
     }
     return (React.createElement("div", { style: { position: 'relative' } },
-        leftBpOffset && rightBpOffset ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: width, left: left })) : null,
-        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
-}
-export default observer(OverviewRubberband);
+        leftBpOffset && rightBpOffset ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, width: Math.abs(width), left: left })) : null,
+        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
+});
 //# sourceMappingURL=OverviewRubberband.js.map