@jbrowse/plugin-linear-genome-view 2.4.0 → 2.4.2

package/esm/index.d.ts

@@ -1,11 +1,6 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
-import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
-import { LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
-import { renderToSvg, totalHeight, SVGTracks, SVGRuler } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
-import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
     exports: {
@@ -166,10 +161,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -180,7 +175,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -190,19 +185,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -216,18 +208,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -346,10 +333,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 message: string;
                 featureIdUnderMouse: string | undefined;
                 contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+                estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
             } & {
-                readonly height: any;
+                readonly height: number;
                 readonly blockType: "dynamicBlocks" | "staticBlocks";
                 readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
             } & {
@@ -360,7 +347,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
                 readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
                 getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
                 searchFeatureByID(id: string): [number, number, number, number] | undefined;
                 readonly currentBytesRequested: number;
@@ -370,19 +357,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly maxAllowableBytes: number;
             } & {
                 setMessage(message: string): void;
+            } & {
                 afterAttach(): void;
-                estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                    headers?: Record<string, string> | undefined;
-                    signal?: AbortSignal | undefined;
-                    filters?: string[] | undefined;
-                }): Promise<{}>;
-                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-                clearRegionStats(): void;
-                setHeight(displayHeight: number): any;
+                estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                setRegionsStatsP(arg: any): void;
+                setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionsStats(): void;
+                setHeight(displayHeight: number): number;
                 resizeHeight(distance: number): number;
                 setScrollTop(scrollTop: number): void;
-                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
                 setCurrBpPerPx(n: number): void;
                 deleteBlock(key: string): void;
@@ -396,18 +380,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly regionTooLargeReason: string;
             } & {
                 reload(): Promise<void>;
+            } & {
                 afterAttach(): void;
             } & {
                 regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
                 regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
                 trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): {
-                    label: string;
-                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                        muiName: string;
-                    };
-                    onClick: () => void;
-                }[];
+                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
                 renderProps(): any;
             } & {
                 renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -590,10 +569,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
             message: string;
             featureIdUnderMouse: string | undefined;
             contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
-            estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+            estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+            estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
         } & {
-            readonly height: any;
+            readonly height: number;
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
         } & {
@@ -604,7 +583,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
         } & {
             readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
             readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-            getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+            getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
             getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
             searchFeatureByID(id: string): [number, number, number, number] | undefined;
             readonly currentBytesRequested: number;
@@ -614,19 +593,16 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly maxAllowableBytes: number;
         } & {
             setMessage(message: string): void;
+        } & {
             afterAttach(): void;
-            estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
-                headers?: Record<string, string> | undefined;
-                signal?: AbortSignal | undefined;
-                filters?: string[] | undefined;
-            }): Promise<{}>;
-            setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
-            setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
-            clearRegionStats(): void;
-            setHeight(displayHeight: number): any;
+            estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+            setRegionsStatsP(arg: any): void;
+            setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+            clearRegionsStats(): void;
+            setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
             setScrollTop(scrollTop: number): void;
-            updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+            updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
             setCurrBpPerPx(n: number): void;
             deleteBlock(key: string): void;
@@ -640,18 +616,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly regionTooLargeReason: string;
         } & {
             reload(): Promise<void>;
+        } & {
             afterAttach(): void;
         } & {
             regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
             regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-            contextMenuItems(): {
-                label: string;
-                icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-                    muiName: string;
-                };
-                onClick: () => void;
-            }[];
+            contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             renderProps(): any;
         } & {
             renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
@@ -797,9 +768,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -826,7 +797,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -989,9 +960,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1018,7 +989,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1191,9 +1162,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1220,7 +1191,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1383,9 +1354,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1412,7 +1383,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1585,9 +1556,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1614,7 +1585,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1777,9 +1748,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 readonly isSearchDialogDisplayed: boolean;
                 readonly scaleBarHeight: number;
                 readonly headerHeight: number;
-                readonly trackHeights: any;
-                readonly trackHeightsWithResizeHandles: any;
-                readonly height: any;
+                readonly trackHeights: number;
+                readonly trackHeightsWithResizeHandles: number;
+                readonly height: number;
                 readonly totalBp: number;
                 readonly maxBpPerPx: number;
                 readonly minBpPerPx: number;
@@ -1806,7 +1777,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 toggleNoTracksActive(): void;
                 toggleShowGridlines(): void;
                 scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number): number;
+                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
                 setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
                 setSearchResults(results?: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query?: string | undefined): void;
                 setGetSequenceDialogOpen(open: boolean): void;
@@ -1908,6 +1879,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, totalHeight, SVGTracks, SVGRuler, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
-export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
-export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
+export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
+export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
+export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
+export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
+export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';

package/esm/index.js

@@ -3,11 +3,10 @@ import { isAbstractMenuManager } from '@jbrowse/core/util';
 // icons
 import LineStyleIcon from '@mui/icons-material/LineStyle';
 // locals
-import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
-import LinearBareDisplayF, { configSchemaFactory as linearBareDisplayConfigSchemaFactory, } from './LinearBareDisplay';
-import LinearGenomeViewF, { RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, } from './LinearGenomeView';
-import { renderToSvg, totalHeight, SVGTracks, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
-import LinearBasicDisplayF, { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
+import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
+import LinearBareDisplayF from './LinearBareDisplay';
+import LinearGenomeViewF, { SearchBox, ZoomControls, LinearGenomeView, } from './LinearGenomeView';
+import LinearBasicDisplayF from './LinearBasicDisplay';
 import FeatureTrackF from './FeatureTrack';
 import BasicTrackF from './BasicTrack';
 import LaunchLinearGenomeViewF from './LaunchLinearGenomeView';
@@ -44,5 +43,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
         }
     }
 }
-export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, totalHeight, SVGTracks, SVGRuler, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
+export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
+export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
+export { RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
+export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
+export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
 //# sourceMappingURL=index.js.map

package/esm/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "2.4.0",
+  "version": "2.4.2",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -66,5 +66,5 @@
     "access": "public"
   },
   "module": "esm/index.js",
-  "gitHead": "78707a2bc3ba8489f26a590ef83f62ede945d048"
+  "gitHead": "36e382a70e7d220343b873e7e6aba5c83e5342c8"
 }

package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx

@@ -6,8 +6,7 @@ import { getConf } from '@jbrowse/core/configuration'
 import { Menu } from '@jbrowse/core/ui'
 
 // locals
-import Tooltip from './Tooltip'
-import BlockMsg from './BlockMsg'
+
 import LinearBlocks from './LinearBlocks'
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel'
 
@@ -113,4 +112,6 @@ const BaseLinearDisplay = observer(function (props: {
 })
 
 export default BaseLinearDisplay
-export { Tooltip, BlockMsg }
+
+export { default as Tooltip } from './Tooltip'
+export { default as BlockMsg } from './BlockMsg'

package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx

@@ -1,4 +1,4 @@
-import React, { useEffect, useState } from 'react'
+import React from 'react'
 import { makeStyles } from 'tss-react/mui'
 import { observer } from 'mobx-react'
 import { getParent } from 'mobx-state-tree'
@@ -24,34 +24,15 @@ const useStyles = makeStyles()(theme => {
 
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = observer(({ model }: { model: any }) => {
-  // only show the loading message after 300ms to prevent excessive flickering
-  const [shown, setShown] = useState(false)
   const { classes } = useStyles()
-  useEffect(() => {
-    let killed = false
-    const timeout = setTimeout(() => {
-      if (!killed) {
-        setShown(true)
-      }
-    }, 300)
-    return () => {
-      clearTimeout(timeout)
-      killed = true
-    }
-  }, [])
-
   const { status: blockStatus } = model
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
   const { message: displayStatus } = getParent<any>(model, 2)
   const status = displayStatus || blockStatus
   return (
-    <>
-      {shown ? (
-        <div className={classes.loading}>
-          <LoadingEllipses message={status} />
-        </div>
-      ) : null}
-    </>
+    <div className={classes.loading}>
+      <LoadingEllipses message={status} />
+    </div>
   )
 })
 
@@ -71,19 +52,18 @@ const ServerSideRenderedBlockContent = observer(function ({
         action={model.reload}
       />
     )
-  }
-  if (model.message) {
+  } else if (model.message) {
     // the message can be a fully rendered react component, e.g. the region too large message
     return React.isValidElement(model.message) ? (
       model.message
     ) : (
       <BlockMsg message={`${model.message}`} severity="info" />
     )
-  }
-  if (!model.filled) {
+  } else if (!model.filled) {
     return <LoadingMessage model={model} />
+  } else {
+    return model.reactElement
   }
-  return model.reactElement
 })
 
 export default ServerSideRenderedBlockContent

package/src/BaseLinearDisplay/components/TooLargeMessage.tsx

@@ -1,14 +1,16 @@
 import React from 'react'
-import BlockMsg from '../components/BlockMsg'
 import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter'
 
+// locals
+import BlockMsg from '../components/BlockMsg'
+
 function TooLargeMessage({
   model,
 }: {
   model: {
     regionTooLargeReason: string
-    estimatedRegionStats?: Stats
-    updateStatsLimit: (s: Stats) => void
+    estimatedRegionsStats?: Stats
+    updateStatsLimit: (s?: Stats) => void
     reload: () => void
   }
 }) {
@@ -17,15 +19,11 @@ function TooLargeMessage({
     <BlockMsg
       severity="warning"
       action={() => {
-        if (!model.estimatedRegionStats) {
-          console.error('No global stats?')
-        } else {
-          model.updateStatsLimit(model.estimatedRegionStats)
-          model.reload()
-        }
+        model.updateStatsLimit(model.estimatedRegionsStats)
+        model.reload()
       }}
       buttonText="Force load"
-      message={`${regionTooLargeReason ? regionTooLargeReason + '. ' : ''}
+      message={`${regionTooLargeReason ? `${regionTooLargeReason}. ` : ''}
       Zoom in to see features or force load (may be slow).`}
     />
   )